Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PDE1B	0	broad.mit.edu	37	12	54963377	54963377	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr12:54963377C>T	ENST00000243052.3	+	5	894	c.458C>T	c.(457-459)gCg>gTg	p.A153V	PDE1B_ENST00000550620.1_Missense_Mutation_p.A133V|PDE1B_ENST00000538346.1_Missense_Mutation_p.A112V|PDE1B_ENST00000394277.3_3'UTR	NM_000924.3	NP_000915.1	Q01064	PDE1B_HUMAN	phosphodiesterase 1B, calmodulin-dependent	153					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			endometrium(1)|kidney(3)|large_intestine(4)|lung(16)|ovary(1)|prostate(1)|stomach(1)|upper_aerodigestive_tract(4)	31						TACTCTACTGCGGTTCTCAAC	0.488000													4	110					0	0	1	0	0
LPA	4018	broad.mit.edu	37	6	160999682	160999682	+	Silent	SNP	A	A	G			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr6:160999682A>G	ENST00000447678.1	-	28	4464	c.4344T>C	c.(4342-4344)tgT>tgC	p.C1448C	LPA_ENST00000316300.5_Silent_p.C1448C	NM_005577.2	NP_005568.2	P08519	APOA_HUMAN	lipoprotein, Lp(a)	3956	Kringle 13.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			NS(1)|breast(3)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(16)|lung(54)|ovary(4)|pancreas(1)|prostate(2)|skin(10)|stomach(1)|urinary_tract(1)	107		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CCATGGTGTAACACCAAGGGC	0.517000													6	44					0	0	1	0	0
CYP4A11	1579	broad.mit.edu	37	1	47402419	47402419	+	Nonsense_Mutation	SNP	G	G	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:47402419G>A	ENST00000310638.4	-	4	458	c.427C>T	c.(427-429)Cga>Tga	p.R143*	CYP4A11_ENST00000371904.4_Nonsense_Mutation_p.R143*|CYP4A11_ENST00000475477.1_5'UTR|CYP4A11_ENST00000457840.2_Nonsense_Mutation_p.R39*|CYP4A11_ENST00000371905.1_Nonsense_Mutation_p.R143*	NM_000778.3	NP_000769.2	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A, polypeptide 11	143					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			endometrium(2)|kidney(5)|large_intestine(6)|lung(6)|ovary(5)|prostate(3)|skin(6)|soft_tissue(1)|upper_aerodigestive_tract(2)	36					NADH(DB00157)	AGCATCCGTCGATGCTGGAAC	0.527000													13	3					0	0	1	0	0
TRIM71	131405	broad.mit.edu	37	3	32932862	32932862	+	Silent	SNP	C	C	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr3:32932862C>T	ENST00000383763.4	+	4	2229	c.2166C>T	c.(2164-2166)caC>caT	p.H722H		NM_001039111.1	NP_001034200.1	Q2Q1W2	LIN41_HUMAN	tripartite motif containing 71, E3 ubiquitin protein ligase	722					multicellular organismal development	cytoplasm	zinc ion binding			breast(3)|endometrium(3)|kidney(1)|large_intestine(4)|lung(7)|ovary(3)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	24						CGAGGAACCACCGGATCCAGC	0.542000													12	4					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45127107	45127107	+	RNA	SNP	C	C	G	rs147409399	by1000genomes	TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr17:45127107C>G	ENST00000575173.1	-	0	418																											CCTTCGTTCACCCAAGAGCAT	0.592000													5	50					0	0	1	0	0
SEH1L	81929	broad.mit.edu	37	18	12971218	12971218	+	Missense_Mutation	SNP	G	G	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr18:12971218G>T	ENST00000262124.11	+	5	715	c.588G>T	c.(586-588)aaG>aaT	p.K196N	SEH1L_ENST00000399892.2_Missense_Mutation_p.K196N	NM_031216.3	NP_112493.2	Q96EE3	SEH1_HUMAN	SEH1-like (S. cerevisiae)	196					attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|carbohydrate metabolic process|cell division|glucose transport|mitotic metaphase plate congression|mitotic prometaphase|mRNA transport|nuclear pore organization|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex				central_nervous_system(1)|endometrium(1)|large_intestine(2)|lung(5)|pancreas(1)|prostate(1)	11						CAATGGCCAAGGTTCAGATTT	0.373000													22	32					9.57634e-11	1.03424e-10	1	1	0
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	C	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:16918653C>T	ENST00000430580.2	-	6	853		c.e6+1			NM_017940.3	NP_060410.2	Q3BBV0	NBPF1_HUMAN	neuroblastoma breakpoint family, member 1							cytoplasm									UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													3	18					0	0	1	0	0
ZNF503	84858	broad.mit.edu	37	10	77158808	77158808	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr10:77158808C>T	ENST00000372524.4	-	2	2126	c.1640G>A	c.(1639-1641)gGg>gAg	p.G547E	RP11-399K21.11_ENST00000418818.2_lincRNA|ZNF503_ENST00000535216.1_Missense_Mutation_p.G547E	NM_032772.4	NP_116161.2	Q96F45	ZN503_HUMAN	zinc finger protein 503	547					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			lung(4)|ovary(1)|skin(1)	6	all_cancers(46;0.105)|all_epithelial(25;0.00449)|Prostate(51;0.0112)|Ovarian(15;0.088)					TTTGTCTGTCCCGGGAAATGC	0.662000													17	17					0	0	1	0	0
RNF149	284996	broad.mit.edu	37	2	101898392	101898392	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr2:101898392G>A	ENST00000295317.3	-	6	1195	c.1088C>T	c.(1087-1089)tCc>tTc	p.S363F		NM_173647.3	NP_775918.2	Q8NC42	RN149_HUMAN	ring finger protein 149	363						integral to membrane	ligase activity|zinc ion binding			breast(3)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(1)|lung(3)|ovary(1)|prostate(1)	12						TTCAGCAGGGGAGGCTGATGG	0.483000													41	52					0	0	1	0	0
ANKRD17	26057	broad.mit.edu	37	4	74005476	74005476	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr4:74005476T>C	ENST00000358602.4	-	15	2973	c.2857A>G	c.(2857-2859)Atc>Gtc	p.I953V	ANKRD17_ENST00000330838.6_Intron|ANKRD17_ENST00000509867.2_Missense_Mutation_p.I840V|ANKRD17_ENST00000514252.1_5'UTR	NM_032217.3	NP_115593.3	O75179	ANR17_HUMAN	ankyrin repeat domain 17	953	Gln-rich.				interspecies interaction between organisms	cytoplasm|nucleus	RNA binding			NS(3)|breast(2)|central_nervous_system(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(15)|lung(39)|ovary(6)|pancreas(1)|prostate(3)|skin(5)|upper_aerodigestive_tract(3)	96	Breast(15;0.000295)		Epithelial(6;8.86e-07)|OV - Ovarian serous cystadenocarcinoma(6;6.22e-06)|all cancers(17;1.51e-05)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGAGGCTGGATTGGCGCAAAA	0.532000													37	27					0	0	1	0	0
ADAT1	23536	broad.mit.edu	37	16	75646709	75646709	+	Missense_Mutation	SNP	A	A	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr16:75646709A>T	ENST00000307921.3	-	7	620	c.475T>A	c.(475-477)Tgt>Agt	p.C159S		NM_012091.3	NP_036223.2	Q9BUB4	ADAT1_HUMAN	adenosine deaminase, tRNA-specific 1	159	A to I editase.				tRNA processing		metal ion binding|RNA binding|tRNA-specific adenosine deaminase activity			breast(1)|endometrium(4)|large_intestine(3)|lung(7)|ovary(1)|prostate(1)|skin(1)|stomach(1)	19						AAGACAGGACAGCAAGGCTGA	0.478000													29	38					0	0	1	0	0
SSH1	54434	broad.mit.edu	37	12	109192840	109192840	+	Missense_Mutation	SNP	T	T	C	rs144199955	by1000genomes	TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr12:109192840T>C	ENST00000326495.5	-	13	1378	c.1285A>G	c.(1285-1287)Atc>Gtc	p.I429V	SSH1_ENST00000360239.3_Missense_Mutation_p.I117V|SSH1_ENST00000326470.5_Missense_Mutation_p.I440V|SSH1_ENST00000551165.1_Missense_Mutation_p.I429V	NM_018984.3	NP_061857.3	Q8WYL5	SSH1_HUMAN	slingshot protein phosphatase 1	429	Tyrosine-protein phosphatase.				actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			breast(1)|endometrium(5)|kidney(3)|large_intestine(9)|lung(8)|ovary(4)|prostate(2)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(1)	38						GGGCGCGTGATGCTGCGCTTC	0.562000													28	27					0	0	1	0	0
ARHGAP9	64333	broad.mit.edu	37	12	57868688	57868688	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr12:57868688G>A	ENST00000393797.2	-	16	2083	c.1891C>T	c.(1891-1893)Cgg>Tgg	p.R631W	ARHGAP9_ENST00000550288.1_Missense_Mutation_p.R620W|ARHGAP9_ENST00000356411.2_Missense_Mutation_p.R560W|ARHGAP9_ENST00000430041.2_Missense_Mutation_p.R357W|ARHGAP9_ENST00000393791.3_Missense_Mutation_p.R541W|ARHGAP9_ENST00000424809.2_Missense_Mutation_p.R541W			Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9	560	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			endometrium(1)|kidney(1)|large_intestine(10)|lung(16)|ovary(1)|prostate(1)	30			GBM - Glioblastoma multiforme(3;3.37e-34)			ATGCAGAGCCGCAAAAAGCTG	0.547000													3	44					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	T	C	rs60558629		TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:12887612T>C	ENST00000535591.1	-	3	440	c.245A>G	c.(244-246)cAt>cGt	p.H82R		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	82								p.H82R(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						GAAGCACCCATGGGCCATAGC	0.488000													4	124					0	0	1	0	0
ALDH1A3	220	broad.mit.edu	37	15	101440899	101440899	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr15:101440899G>A	ENST00000329841.5	+	9	1535	c.1003G>A	c.(1003-1005)Gtg>Atg	p.V335M	ALDH1A3_ENST00000346623.6_Missense_Mutation_p.V228M|RP11-66B24.4_ENST00000560351.1_RNA	NM_000693.2	NP_000684.2	P47895	AL1A3_HUMAN	aldehyde dehydrogenase 1 family, member A3	335					retinal metabolic process	cytoplasm	aldehyde dehydrogenase|protein homodimerization activity			NS(1)|central_nervous_system(2)|endometrium(3)|large_intestine(7)|lung(9)|pancreas(1)|prostate(2)|skin(1)|urinary_tract(1)	27	Lung NSC(78;0.00144)|all_lung(78;0.0018)|Melanoma(26;0.00852)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.0766)|Lung(145;0.103)		NADH(DB00157)|Vitamin A(DB00162)	CAGGCGGAGCGTGGAGTATGC	0.572000													9	22					0	0	1	0	0
TM7SF3	51768	broad.mit.edu	37	12	27129269	27129269	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr12:27129269T>C	ENST00000343028.4	-	10	1436	c.1211A>G	c.(1210-1212)gAt>gGt	p.D404G	RP11-421F16.3_ENST00000500632.1_RNA	NM_016551.2	NP_057635.1	Q9NS93	TM7S3_HUMAN	transmembrane 7 superfamily member 3	404						integral to membrane|plasma membrane				breast(1)|endometrium(2)|kidney(1)|large_intestine(4)|lung(6)|prostate(1)|stomach(1)|upper_aerodigestive_tract(2)	18	Colorectal(261;0.0847)					TACACCATCATCATGAAAAAT	0.363000													7	22					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105924111	105924111	+	Silent	SNP	T	T	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr2:105924111T>A	ENST00000393359.2	-	2	1074	c.648A>T	c.(646-648)atA>atT	p.I216I	TGFBRAP1_ENST00000258449.1_Silent_p.I216I			Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor associated protein 1	216	CNH.				regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|cervix(1)|endometrium(7)|kidney(2)|large_intestine(5)|lung(11)|prostate(1)|skin(1)|stomach(1)|urinary_tract(1)	31						CCTGTCTCCCTATCCTCTTGA	0.587000													6	149					0	0	1	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50461638	50461638	+	Missense_Mutation	SNP	A	A	G			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr19:50461638A>G	ENST00000447370.2	-	8	1643	c.1553T>C	c.(1552-1554)cTg>cCg	p.L518P	SIGLEC11_ENST00000426971.2_Intron|CTC-326K19.6_ENST00000451973.1_Missense_Mutation_p.L4P	NM_052884.2	NP_443116.2	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11	518					cell adhesion	integral to membrane	sugar binding			breast(1)|central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(8)|lung(9)|ovary(6)|pancreas(1)|prostate(1)|skin(1)	32		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		ATGGAGGCTCAGGGAGCTGTT	0.677000													3	28					0	0	1	0	0
CENPJ	55835	broad.mit.edu	37	13	25466996	25466996	+	Missense_Mutation	SNP	G	G	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr13:25466996G>T	ENST00000381884.4	-	10	3186	c.3001C>A	c.(3001-3003)Cag>Aag	p.Q1001K	CENPJ_ENST00000545981.1_Missense_Mutation_p.Q1001K	NM_018451.4	NP_060921.3	Q9HC77	CENPJ_HUMAN	centromere protein J	1001					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			endometrium(5)|kidney(4)|large_intestine(14)|lung(13)|ovary(5)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	47		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		GCTATTTGCTGTTTTAAAGTC	0.333000													7	56					7.48243e-07	7.48243e-07	1	1	0
TTLL6	284076	broad.mit.edu	37	17	46847140	46847140	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr17:46847140G>A	ENST00000393382.3	-	14	2501	c.2360C>T	c.(2359-2361)tCc>tTc	p.S787F	TTLL6_ENST00000433608.2_Missense_Mutation_p.S480F	NM_001130918.1	NP_001124390.1	Q8N841	TTLL6_HUMAN	tubulin tyrosine ligase-like family, member 6	739						cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			endometrium(1)|large_intestine(5)|lung(9)|prostate(1)|skin(2)	18						TGGGAAGAAGGAGAGCTTCCC	0.507000													25	35					0	0	1	0	0
PLCH1	23007	broad.mit.edu	37	3	155200763	155200763	+	Missense_Mutation	SNP	A	A	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr3:155200763A>T	ENST00000460012.1	-	23	3319	c.2962T>A	c.(2962-2964)Tca>Aca	p.S988T	PLCH1_ENST00000334686.6_Missense_Mutation_p.S988T|PLCH1_ENST00000494598.1_Intron|PLCH1_ENST00000447496.2_3'UTR|PLCH1_ENST00000414191.1_Missense_Mutation_p.S988T|PLCH1_ENST00000340059.7_Missense_Mutation_p.S1026T			Q4KWH8	PLCH1_HUMAN	phospholipase C, eta 1	1026					lipid catabolic process|phosphatidylinositol-mediated signaling	membrane	calcium ion binding|calcium-dependent phospholipase C activity|phosphatidylinositol phospholipase C activity|signal transducer activity			NS(3)|breast(3)|endometrium(9)|kidney(4)|large_intestine(20)|lung(45)|ovary(2)|prostate(5)|skin(8)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(4)	107			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)			GAGGAGGATGATAACTTTTTG	0.418000													33	7					0	0	1	0	0
RET	5979	broad.mit.edu	37	10	43617416	43617416	+	Missense_Mutation	SNP	T	T	C	rs74799832		TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr10:43617416T>C	ENST00000355710.3	+	16	2985	c.2753T>C	c.(2752-2754)aTg>aCg	p.M918T	RET_ENST00000340058.5_Missense_Mutation_p.M918T	NM_020975.4	NP_066124.1	P07949	RET_HUMAN	ret proto-oncogene	918	Protein kinase.		M -> T (in RADYS, MEN2B and MTC; sporadic form; somatic mutation).		homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity	p.M918T(247)	CCDC6/RET(4)|KIF5B/RET(79)	NS(2)|adrenal_gland(26)|breast(5)|central_nervous_system(3)|endometrium(6)|haematopoietic_and_lymphoid_tissue(7)|kidney(2)|large_intestine(14)|lung(27)|ovary(5)|prostate(3)|skin(1)|thyroid(504)|upper_aerodigestive_tract(1)|urinary_tract(1)	607		Ovarian(717;0.0423)			Sunitinib(DB01268)	GTTAAATGGATGGCAATTGAA	0.443000		1	"""T, Mis, N, F"""	"""H4, PRKAR1A, NCOA4, PCM1, GOLGA5, TRIM33, KTN1, TRIM27, HOOK3, KIF5B, CCDC6"""	"""medullary thyroid,  papillary thyroid, pheochromocytoma, NSCLC"""	"""medullary thyroid,  papillary thyroid, pheochromocytoma"""	Hirschsprung disease		Multiple Endocrine Neoplasia, type 2B;Multiple Endocrine Neoplasia, type 2A;Familial Medullary Thyroid Carcinoma				48	76					0	0	1	0	0
ARL6IP4	51329	broad.mit.edu	37	12	123466570	123466570	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr12:123466570C>T	ENST00000315580.5	+	4	1233	c.905C>T	c.(904-906)gCc>gTc	p.A302V	RP11-197N18.2_ENST00000540866.2_RNA|ARL6IP4_ENST00000412505.2_Intron|ARL6IP4_ENST00000357866.4_Intron|ARL6IP4_ENST00000392435.2_Missense_Mutation_p.A283V|ARL6IP4_ENST00000543566.1_Missense_Mutation_p.A283V|ARL6IP4_ENST00000426960.2_Missense_Mutation_p.A160V|ARL6IP4_ENST00000454885.2_Missense_Mutation_p.A168V|ARL6IP4_ENST00000439686.2_Missense_Mutation_p.A171V|ARL6IP4_ENST00000453766.2_Missense_Mutation_p.A294V			Q66PJ3	AR6P4_HUMAN	ADP-ribosylation-like factor 6 interacting protein 4	302					RNA splicing	nucleus						all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.11e-05)|Epithelial(86;0.000127)|BRCA - Breast invasive adenocarcinoma(302;0.107)		GAGTGGGATGCCCGGCAGAGC	0.622000													3	29					0	0	1	0	0
FAM72B	653820	broad.mit.edu	37	1	120854564	120854564	+	Nonsense_Mutation	SNP	C	C	A			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:120854564C>A	ENST00000369390.3	+	4	1257	c.428C>A	c.(427-429)tCa>tAa	p.S143*	FAM72B_ENST00000355228.4_Nonsense_Mutation_p.S103*|FAM72B_ENST00000471903.2_3'UTR	NM_001100910.1	NP_001094380.1	Q86X60	FA72B_HUMAN	family with sequence similarity 72, member B	143										large_intestine(1)|lung(2)	3	all_neural(166;0.181)	all_lung(203;7.27e-05)|Lung NSC(69;0.000389)|all_epithelial(167;0.068)		Lung(183;0.0327)|LUSC - Lung squamous cell carcinoma(189;0.19)		TTAAATATCTCAGCAGAGGAG	0.269000													21	3					4.59853e-10	4.77539e-10	1	1	0
PADI6	353238	broad.mit.edu	37	1	17721722	17721723	+	RNA	DEL	GA	GA	-	rs58784721		TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:17721722_17721723delGA	ENST00000434762.2	+	0	1545							Q6TGC4	PADI6_HUMAN	peptidyl arginine deiminase, type VI						peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(9)|lung(9)|ovary(2)	29		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	tttgttttttgagagtcttgct	0.485													2	4	---	---	---	---					
CYP4Z2P	0	broad.mit.edu	37	1	47310359	47310360	+	RNA	INS	-	-	T			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:47310359_47310360insT	ENST00000505841.1	-	0	1269					NR_002788.2																						CAAAAACAAAACCCTAGATATT	0.421													3	6	---	---	---	---					
OBSCN	84033	broad.mit.edu	37	1	228540722	228540722	+	Frame_Shift_Del	DEL	A	A	-			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr1:228540722delA	ENST00000570156.2	+	90	21565	c.21491delA	c.(21490-21492)cgfs	p.Q7164fs	OBSCN_ENST00000284548.11_Frame_Shift_Del_p.Q6207fs|OBSCN_ENST00000366709.4_Frame_Shift_Del_p.Q3326fs|OBSCN_ENST00000366707.4_Frame_Shift_Del_p.Q3841fs|OBSCN_ENST00000422127.1_Frame_Shift_Del_p.Q6207fs	NM_001271223.2	NP_001258152.2	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	6207					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			NS(2)|breast(7)|central_nervous_system(5)|cervix(2)|endometrium(30)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(37)|lung(89)|ovary(8)|pancreas(3)|prostate(13)|skin(6)|stomach(11)|upper_aerodigestive_tract(2)|urinary_tract(3)	223		Prostate(94;0.0405)				CTGCAGGCCCAGGAGCAGTGT	0.697													2	4	---	---	---	---					
ADH1C	126	broad.mit.edu	37	4	100261040	100261041	+	RNA	INS	-	-	A	rs138827617	by1000genomes	TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr4:100261040_100261041insA	ENST00000515683.1	-	0	1316					NM_000669.3	NP_000660.1	P00326	ADH1G_HUMAN	alcohol dehydrogenase 1C (class I), gamma polypeptide						ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding								OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	AGTGCTTTCACAAAAAAAATCA	0.327													4	4	---	---	---	---					
PROSER2	254427	broad.mit.edu	37	10	11911789	11911789	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr10:11911789delG	ENST00000277570.5	+	4	846	c.692delG	c.(691-693)cgfs	p.R231fs	PROSER2_ENST00000379200.1_Frame_Shift_Del_p.R35fs|PROSER2-AS1_ENST00000453242.1_RNA|PROSER2-AS1_ENST00000445498.1_RNA	NM_153256.3	NP_694988.3			proline and serine-rich protein 2																		CCTGCCGCCCGGGGGCCCCGC	0.736													2	4	---	---	---	---					
RP11-377D9.3	0	broad.mit.edu	37	12	13174141	13174142	+	RNA	INS	-	-	AACAACAAC	rs112328257	by1000genomes	TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr12:13174141_13174142insAACAACAAC	ENST00000543321.1	+	0	1025																											tctgtctcaaaaacaacaacaa	0.550													3	6	---	---	---	---					
ADSSL1	122622	broad.mit.edu	37	14	105190771	105190771	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WB-A80V-01A-12D-A35I-08	TCGA-WB-A80V-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	152e6802-b426-4015-93e1-23526d5250c5	8c1aa1d7-058f-4953-9448-d33817d21499	g.chr14:105190771delC	ENST00000330877.2	+	1	249	c.164delC	c.(163-165)agfs	p.T55fs		NM_152328.3	NP_689541.1	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1	55					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			central_nervous_system(1)|cervix(1)|kidney(1)|lung(5)|ovary(2)|prostate(1)	11		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	CTGCTGGCCACGGACGCCGAC	0.766													2	4	---	---	---	---					
