Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PIGP	51227	broad.mit.edu	37	21	38444872	38444872	+	Missense_Mutation	SNP	T	T	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr21:38444872T>G	ENST00000464265.1	-	1	239	c.16A>C	c.(16-18)Aca>Cca	p.T6P	PIGP_ENST00000399098.1_Intron|PIGP_ENST00000399102.1_Intron|PIGP_ENST00000399103.1_Intron|PIGP_ENST00000360525.3_Intron	NM_153681.2	NP_710148.1	P57054	PIGP_HUMAN	phosphatidylinositol glycan anchor biosynthesis, class P	6					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex|integral to membrane	phosphatidylinositol N-acetylglucosaminyltransferase activity			kidney(1)|urinary_tract(1)	2		Myeloproliferative disorder(46;0.0412)				GCCAGCGATGTGCTCCGTGGC	0.607000													49	36					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145302714	145302714	+	Silent	SNP	A	A	G	rs9424867		TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:145302714A>G	ENST00000342960.5	+	8	1187	c.1152A>G	c.(1150-1152)ttA>ttG	p.L384L	RP11-458D21.5_ENST00000468030.1_3'UTR|NBPF10_ENST00000369338.1_Silent_p.L113L|NBPF10_ENST00000369339.2_Silent_p.L113L	NM_001039703.4	NP_001034792.4	A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10	384								p.L113L(3)|p.L384L(3)		NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		AGGAGAAGTTACGGGAAGGGA	0.527000													4	58					0	0	1	0	0
UTRN	7402	broad.mit.edu	37	6	144761510	144761510	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr6:144761510C>T	ENST00000367545.3	+	12	1415	c.1415C>T	c.(1414-1416)gCt>gTt	p.A472V		NM_007124.2	NP_009055.2	P46939	UTRO_HUMAN	utrophin	472	Interaction with SYNM.				muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			NS(1)|autonomic_ganglia(1)|breast(7)|central_nervous_system(1)|cervix(2)|endometrium(21)|kidney(10)|large_intestine(29)|lung(56)|ovary(5)|pancreas(1)|prostate(1)|skin(5)|stomach(1)|upper_aerodigestive_tract(5)|urinary_tract(2)	148		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		GATCTTGAGGCTGAACAGGTG	0.358000													8	29					0	0	1	0	0
ACOT12	134526	broad.mit.edu	37	5	80640854	80640854	+	Missense_Mutation	SNP	T	T	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr5:80640854T>G	ENST00000307624.3	-	8	808	c.780A>C	c.(778-780)gaA>gaC	p.E260D		NM_130767.2	NP_570123.1	Q8WYK0	ACO12_HUMAN	acyl-CoA thioesterase 12	260	Acyl coenzyme A hydrolase 2.				acyl-CoA metabolic process|fatty acid metabolic process	cytosol	acetyl-CoA hydrolase activity|carboxylesterase activity			cervix(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(10)|lung(7)|ovary(2)	23		Lung NSC(167;0.0176)|all_lung(232;0.0205)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;1.37e-45)|Epithelial(54;1.25e-39)|all cancers(79;5.01e-34)		GAACTCCAACTTCAACACTGT	0.577000													23	21					0	0	1	0	0
AC024560.3	0	broad.mit.edu	37	3	197348634	197348634	+	RNA	SNP	G	G	C			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr3:197348634G>C	ENST00000418868.1	-	0	625					NR_003266.2																						CAGCAGCACCGATGGGCCTGC	0.542000													4	83					0	0	1	0	0
H6PD	9563	broad.mit.edu	37	1	9322245	9322245	+	Silent	SNP	G	G	A			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:9322245G>A	ENST00000377403.2	+	4	1175	c.873G>A	c.(871-873)cgG>cgA	p.R291R	H6PD_ENST00000602477.1_Silent_p.R302R	NM_004285.3	NP_004276.2	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase (glucose 1-dehydrogenase)	291	Glucose 1-dehydrogenase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding			breast(1)|endometrium(2)|kidney(2)|large_intestine(5)|lung(11)|ovary(1)|upper_aerodigestive_tract(1)	23	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	CTGTGCTGCGGCACAAGCTTC	0.642000													3	20					0	0	1	0	0
LL22NC03-80A10.6	0	broad.mit.edu	37	22	22664186	22664186	+	RNA	SNP	A	A	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr22:22664186A>G	ENST00000426066.1	+	0	709					NR_027293.1																						CAGATCAAGAAAGCACTCTGA	0.498000													3	57					0	0	1	0	0
CD101	9398	broad.mit.edu	37	1	117564514	117564514	+	Silent	SNP	T	T	C			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:117564514T>C	ENST00000256652.4	+	7	2395	c.2337T>C	c.(2335-2337)gcT>gcC	p.A779A	CD101_ENST00000369470.1_Silent_p.A779A	NM_001256106.1|NM_001256109.1|NM_001256111.1|NM_004258.4	NP_001243035.1|NP_001243038.1|NP_001243040.1|NP_004249.2	Q93033	IGSF2_HUMAN	CD101 molecule	779	Ig-like C2-type 6.				cell surface receptor linked signaling pathway	integral to membrane|plasma membrane	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			NS(1)|breast(1)|endometrium(6)|kidney(3)|large_intestine(14)|lung(18)|ovary(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	49						ATCACTGTGCTGTGGAGGAAT	0.433000													28	50					0	0	1	0	0
EP400	57634	broad.mit.edu	37	12	132547087	132547087	+	Silent	SNP	G	G	A	rs12366766		TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr12:132547087G>A	ENST00000333577.4	+	48	8392	c.8283G>A	c.(8281-8283)caG>caA	p.Q2761Q	EP400_ENST00000332482.4_Silent_p.Q2688Q|EP400_ENST00000389562.2_Silent_p.Q2724Q|EP400_ENST00000330386.6_Silent_p.Q2644Q|EP400_ENST00000389561.2_Silent_p.Q2725Q			Q96L91	EP400_HUMAN	E1A binding protein p400	2761	Interaction with ZNF42 (By similarity).|Poly-Gln.				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity	p.Q2724Q(16)|p.Q2725Q(1)		NS(1)|breast(6)|central_nervous_system(10)|cervix(1)|endometrium(21)|kidney(13)|large_intestine(25)|lung(56)|ovary(5)|prostate(8)|skin(6)|stomach(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	161	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcagcagcaacaacagc	0.562000													5	34					0	0	1	0	0
ORC1	4998	broad.mit.edu	37	1	52859253	52859253	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:52859253C>T	ENST00000371568.3	-	6	1162	c.944G>A	c.(943-945)cGc>cAc	p.R315H	ORC1_ENST00000371566.1_Missense_Mutation_p.R315H	NM_001190818.1|NM_001190819.1|NM_004153.3	NP_001177747.1|NP_001177748.1|NP_004144.2	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	315					cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding	p.R315H(1)		breast(1)|cervix(2)|endometrium(4)|kidney(4)|large_intestine(9)|lung(9)|ovary(1)|prostate(2)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	37						CAGGATTATGCGATGTTCAGG	0.468000													4	114					0	0	1	0	0
GLI3	2737	broad.mit.edu	37	7	42085066	42085066	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr7:42085066C>T	ENST00000395925.3	-	6	827	c.743G>A	c.(742-744)cGc>cAc	p.R248H	GLI3_ENST00000479210.1_5'UTR	NM_000168.5	NP_000159.3	P10071	GLI3_HUMAN	GLI family zinc finger 3	248					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			NS(2)|biliary_tract(1)|breast(4)|central_nervous_system(2)|endometrium(12)|kidney(7)|large_intestine(25)|lung(49)|ovary(3)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(2)	112						ATAGGGGCTGCGCTGGCCAGT	0.552000									Pallister-Hall syndrome;Greig Cephalopolysyndactyly				59	61					0	0	1	0	0
RAD51AP1	10635	broad.mit.edu	37	12	4665596	4665596	+	Missense_Mutation	SNP	G	G	C			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr12:4665596G>C	ENST00000228843.9	+	9	900	c.850G>C	c.(850-852)Gat>Cat	p.D284H	RAD51AP1_ENST00000544927.1_Intron|RAD51AP1_ENST00000544931.1_Intron|RAD51AP1_ENST00000543041.1_Missense_Mutation_p.D149H|RAD51AP1_ENST00000321524.7_Intron|RAD51AP1_ENST00000352618.4_Missense_Mutation_p.D267H	NM_001130862.1	NP_001124334.1	Q96B01	R51A1_HUMAN	RAD51 associated protein 1	284					double-strand break repair via homologous recombination		double-stranded DNA binding|protein binding|RNA binding|single-stranded DNA binding			breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(5)|upper_aerodigestive_tract(1)	13			Colorectal(7;0.00306)|COAD - Colon adenocarcinoma(12;0.0389)			TCTGTCTTCAGATACCACTAG	0.423000													22	52					0	0	1	0	0
TINAG	27283	broad.mit.edu	37	6	54191706	54191706	+	Nonsense_Mutation	SNP	G	G	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr6:54191706G>T	ENST00000259782.4	+	4	712	c.616G>T	c.(616-618)Gaa>Taa	p.E206*	TINAG_ENST00000370869.3_Nonsense_Mutation_p.E202*|TINAG_ENST00000370864.3_Nonsense_Mutation_p.E188*	NM_014464.3	NP_055279.3	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	206					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(5)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(11)|ovary(4)|skin(1)	34	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GAGCATGAATGAAATGACAGT	0.368000													10	28					0.000442599	0.000454894	1	1	0
MAGI1	9223	broad.mit.edu	37	3	65425585	65425585	+	Silent	SNP	C	C	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr3:65425585C>T	ENST00000330909.8	-	9	1238	c.1239G>A	c.(1237-1239)caG>caA	p.Q413Q	MAGI1_ENST00000497477.2_Silent_p.Q413Q|MAGI1_ENST00000470990.1_5'UTR|MAGI1_ENST00000402939.2_Silent_p.Q413Q|MAGI1_ENST00000483466.1_Silent_p.Q413Q	NM_015520.1	NP_056335.1	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ domain containing 1	413	Poly-Gln.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			breast(1)|endometrium(7)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|liver(1)|lung(21)|pancreas(1)|skin(5)	51		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		gctgctgctgctgctgttgct	0.537000											OREG0015658	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	38					0	0	1	0	0
UPF2	26019	broad.mit.edu	37	10	12071006	12071006	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr10:12071006T>C	ENST00000356352.2	-	2	1356	c.883A>G	c.(883-885)Att>Gtt	p.I295V	UPF2_ENST00000357604.5_Missense_Mutation_p.I295V|UPF2_ENST00000397053.2_Missense_Mutation_p.I295V			Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog (yeast)	295	MIF4G 1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			breast(3)|central_nervous_system(3)|cervix(1)|endometrium(5)|kidney(6)|large_intestine(14)|lung(17)|ovary(2)|skin(3)|urinary_tract(2)	56		Renal(717;0.228)				TCAGCATTAATAATATTTTTT	0.368000													18	48					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112722783	112722783	+	Missense_Mutation	SNP	C	C	T	rs35252762	byFrequency	TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr2:112722783C>T	ENST00000295408.4	+	5	1030	c.773C>T	c.(772-774)gCg>gTg	p.A258V	MERTK_ENST00000421804.2_Missense_Mutation_p.A258V|MERTK_ENST00000409780.1_Missense_Mutation_p.A82V			Q12866	MERTK_HUMAN	c-mer proto-oncogene tyrosine kinase	258	Ig-like C2-type 2.				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			breast(1)|endometrium(3)|kidney(2)|large_intestine(6)|liver(1)|lung(18)|pancreas(1)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(10)	46						ACGGAGATGGCGGTCTTCAGT	0.502000													4	44					0	0	1	0	0
CLK2	1196	broad.mit.edu	37	1	155234529	155234529	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:155234529G>A	ENST00000368361.4	-	9	1285	c.970C>T	c.(970-972)Cgg>Tgg	p.R324W	CLK2_ENST00000361168.5_Missense_Mutation_p.R323W|CLK2_ENST00000536801.1_Missense_Mutation_p.R324W|CLK2_ENST00000497188.1_5'UTR|CLK2_ENST00000355560.4_Missense_Mutation_p.R322W			P49760	CLK2_HUMAN	CDC-like kinase 2	324	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			endometrium(4)|lung(12)|prostate(3)|skin(2)|upper_aerodigestive_tract(1)	22	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TCTACCACCCGCACAGCTGTG	0.532000								Other conserved DNA damage response genes					4	54					0	0	1	0	0
HSDL2	84263	broad.mit.edu	37	9	115200815	115200815	+	Missense_Mutation	SNP	C	C	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr9:115200815C>G	ENST00000398805.3	+	7	930	c.703C>G	c.(703-705)Cca>Gca	p.P235A	HSDL2_ENST00000539114.1_Missense_Mutation_p.P30A|HSDL2_ENST00000262542.7_Missense_Mutation_p.P115A|HSDL2_ENST00000488101.1_3'UTR|HSDL2_ENST00000398803.1_Missense_Mutation_p.P162A	NM_032303.4	NP_115679.2	Q6YN16	HSDL2_HUMAN	hydroxysteroid dehydrogenase like 2	235						peroxisome	oxidoreductase activity|sterol binding			NS(1)|breast(2)|cervix(2)|endometrium(1)|large_intestine(2)|lung(2)|prostate(1)|upper_aerodigestive_tract(2)	13						TTTCCAAAAGCCAAAAAGTTT	0.358000													20	43					0	0	1	0	0
CNST	163882	broad.mit.edu	37	1	246754968	246754968	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:246754968C>T	ENST00000366513.4	+	2	373	c.104C>T	c.(103-105)gCa>gTa	p.A35V	CNST_ENST00000366512.3_Missense_Mutation_p.A35V|CNST_ENST00000483271.1_3'UTR	NM_152609.2	NP_689822.2	Q6PJW8	CNST_HUMAN	consortin, connexin sorting protein	35					positive regulation of Golgi to plasma membrane protein transport	integral to membrane|plasma membrane|protein complex|trans-Golgi network|transport vesicle	connexin binding			breast(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(4)|lung(12)|prostate(1)|urinary_tract(2)	28						CTGCCTTCTGCATCAGATGAA	0.498000													17	64					0	0	1	0	0
DYM	54808	broad.mit.edu	37	18	46858298	46858298	+	Silent	SNP	G	G	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr18:46858298G>T	ENST00000269445.6	-	8	1156	c.699C>A	c.(697-699)gcC>gcA	p.A233A	DYM_ENST00000578396.1_Silent_p.A78A|DYM_ENST00000442713.2_Intron	NM_017653.3	NP_060123.3	Q7RTS9	DYM_HUMAN	dymeclin	233						Golgi apparatus				NS(1)|cervix(1)|endometrium(3)|kidney(2)|large_intestine(3)|lung(6)|skin(1)|upper_aerodigestive_tract(1)	18						GGAAAACATGGGCCCCTGGAG	0.403000													3	45					0.00024832	0.00026251	1	1	0
RRAS2	22800	broad.mit.edu	37	11	14317330	14317330	+	Missense_Mutation	SNP	T	T	A			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr11:14317330T>A	ENST00000545643.1	-	2	511	c.198A>T	c.(196-198)agA>agT	p.R66S	RRAS2_ENST00000414023.2_5'UTR|RRAS2_ENST00000537760.1_Missense_Mutation_p.R25S|RRAS2_ENST00000532814.1_5'UTR|RRAS2_ENST00000526063.1_5'UTR|RRAS2_ENST00000529237.1_5'UTR|RRAS2_ENST00000534746.1_5'UTR|RRAS2_ENST00000256196.4_Missense_Mutation_p.R60S	NM_012250.5	NP_036382.2	P62070	RRAS2_HUMAN	related RAS viral (r-ras) oncogene homolog 2	60						endoplasmic reticulum|plasma membrane	GTP binding|GTPase activity|protein binding			breast(3)|endometrium(4)|large_intestine(2)|lung(2)|upper_aerodigestive_tract(1)	12				Epithelial(150;0.203)		GCCGGGCTGCTCTGTCATCTA	0.308000													70	34					0	0	1	0	0
GPNMB	10457	broad.mit.edu	37	7	23296635	23296635	+	Missense_Mutation	SNP	C	C	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr7:23296635C>G	ENST00000258733.4	+	4	787	c.492C>G	c.(490-492)caC>caG	p.H164Q	GPNMB_ENST00000409458.3_Missense_Mutation_p.H164Q|GPNMB_ENST00000381990.2_Missense_Mutation_p.H164Q|GPNMB_ENST00000539136.1_Missense_Mutation_p.H65Q|GPNMB_ENST00000453162.2_Intron			Q14956	GPNMB_HUMAN	glycoprotein (transmembrane) nmb	164					negative regulation of cell proliferation	melanosome				breast(5)|central_nervous_system(1)|endometrium(2)|kidney(2)|large_intestine(7)|liver(2)|lung(17)|ovary(3)|stomach(2)	41			GBM - Glioblastoma multiforme(13;0.154)			CTTTTCCTCACCACCCCGGAT	0.463000													21	81					0	0	1	0	0
GOLGA8F	0	broad.mit.edu	37	15	28632820	28632820	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr15:28632820T>C	ENST00000526619.2	+	14	1761	c.746T>C	c.(745-747)cTg>cCg	p.L249P	GOLGA8F_ENST00000532622.2_Missense_Mutation_p.L463P|GOLGA8F_ENST00000450328.2_Missense_Mutation_p.L245P|GOLGA8F_ENST00000337838.7_Intron																lung(4)	4						CCACAGGACCTGGAGAGCAGG	0.617000													4	52					0	0	1	0	0
C1orf56	54964	broad.mit.edu	37	1	151020749	151020749	+	Silent	SNP	T	T	C			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr1:151020749T>C	ENST00000368926.5	+	1	534	c.426T>C	c.(424-426)aaT>aaC	p.N142N		NM_017860.3	NP_060330.2	Q9BUN1	CA056_HUMAN	chromosome 1 open reading frame 56	142						extracellular region				endometrium(1)|kidney(1)|lung(3)|ovary(1)|prostate(1)	7	Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			TTATAGCCAATAGTCAGGAGC	0.592000											OREG0013793	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	47					0	0	1	0	0
OGDHL	55753	broad.mit.edu	37	10	50948877	50948877	+	Silent	SNP	C	C	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr10:50948877C>G	ENST00000374103.4	-	16	2104	c.2019G>C	c.(2017-2019)cgG>cgC	p.R673R	OGDHL_ENST00000432695.1_Silent_p.R464R|OGDHL_ENST00000419399.1_Silent_p.R616R	NM_018245.2	NP_060715.2	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like	673					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			central_nervous_system(1)|cervix(1)|endometrium(6)|kidney(2)|large_intestine(14)|lung(30)|ovary(1)|pancreas(1)|prostate(2)|skin(1)|soft_tissue(1)|upper_aerodigestive_tract(1)	61						GAACATGGTGCCGGTGACTGC	0.637000													4	46					0	0	1	0	0
ZNF845	91664	broad.mit.edu	37	19	53856730	53856730	+	Silent	SNP	G	G	A			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr19:53856730G>A	ENST00000458035.1	+	4	2919	c.2802G>A	c.(2800-2802)aaG>aaA	p.K934K	ZNF845_ENST00000595091.1_Silent_p.K934K	NM_138374.1	NP_612383.1	Q96IR2	ZN845_HUMAN	zinc finger protein 845	934					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.K934K(3)		endometrium(2)|kidney(10)|lung(7)|pancreas(1)|prostate(1)|skin(2)|stomach(1)|urinary_tract(2)	26						TAATTCATAAGACAATTCATA	0.368000													3	30					0	0	1	0	0
PIK3R5	23533	broad.mit.edu	37	17	8789897	8789897	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr17:8789897G>A	ENST00000447110.1	-	13	2055	c.1931C>T	c.(1930-1932)gCc>gTc	p.A644V	PIK3R5_ENST00000584803.1_Missense_Mutation_p.A643V|PIK3R5_ENST00000581552.1_Missense_Mutation_p.A644V	NM_001142633.2|NM_001251851.1|NM_001251852.1|NM_001251853.1|NM_001251855.1	NP_001136105.1|NP_001238780.1|NP_001238781.1|NP_001238782.1|NP_001238784.1	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	644					platelet activation	cytosol|membrane|nucleus				breast(2)|central_nervous_system(1)|endometrium(4)|kidney(2)|large_intestine(3)|lung(14)|prostate(3)|skin(4)|urinary_tract(1)	34						GCCCTCCAGGGCCTGGGCTTC	0.602000													19	23					0	0	1	0	0
BUB1	699	broad.mit.edu	37	2	111413372	111413372	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr2:111413372G>A	ENST00000535254.1	-	15	1827	c.1760C>T	c.(1759-1761)gCg>gTg	p.A587V	BUB1_ENST00000302759.6_Missense_Mutation_p.A607V|BUB1_ENST00000409311.1_Missense_Mutation_p.A607V	NM_001278616.1	NP_001265545.1	O43683	BUB1_HUMAN	BUB1 mitotic checkpoint serine/threonine kinase	607					apoptosis|cell division|chromosome segregation|interspecies interaction between organisms|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|regulation of sister chromatid cohesion	condensed chromosome kinetochore|cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			breast(3)|endometrium(8)|kidney(4)|large_intestine(9)|lung(18)|ovary(1)|prostate(1)|stomach(1)	45		Ovarian(717;0.0822)		BRCA - Breast invasive adenocarcinoma(221;0.0556)		TGGTGTAGACGCAAGTTGTGC	0.463000													4	136					0	0	1	0	0
P2RY1	5028	broad.mit.edu	37	3	152554482	152554482	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr3:152554482C>T	ENST00000305097.3	+	1	1747	c.911C>T	c.(910-912)gCc>gTc	p.A304V		NM_002563.3	NP_002554.1	P47900	P2RY1_HUMAN	purinergic receptor P2Y, G-protein coupled, 1	304					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|platelet activation	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			breast(1)|endometrium(1)|large_intestine(7)|lung(11)|ovary(1)|prostate(2)	23			LUSC - Lung squamous cell carcinoma(72;0.0628)|Lung(72;0.11)			AGGGTTTATGCCACGTATCAG	0.478000													4	97					0	0	1	0	0
CEP192	55125	broad.mit.edu	37	18	13049394	13049394	+	Silent	SNP	A	A	G			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr18:13049394A>G	ENST00000506447.1	+	16	2684	c.2604A>G	c.(2602-2604)acA>acG	p.T868T	CEP192_ENST00000430049.2_Silent_p.T393T|CEP192_ENST00000325971.8_Silent_p.T272T	NM_032142.3	NP_115518.3	B7ZMF0	B7ZMF0_HUMAN	centrosomal protein 192kDa	463										NS(1)|breast(4)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(12)|lung(36)|ovary(4)|pancreas(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	71						ATTCAGTTACAAATAGAGAGA	0.363000													14	45					0	0	1	0	0
PMS2P3	0	broad.mit.edu	37	7	75145720	75145721	+	RNA	DEL	AT	AT	-			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr7:75145720_75145721delAT	ENST00000418756.1	-	0	618					NR_028059.1															lung(1)	1						TCCTTTGGGGatatatatatat	0.302													2	4	---	---	---	---					
LOXL4	84171	broad.mit.edu	37	10	100015403	100015403	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WB-A815-01A-11D-A35I-08	TCGA-WB-A815-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	db4e906f-677c-4446-8bcd-b7d03f90a56a	b2a3bd0c-6744-4386-9c3a-3d414d4c521a	g.chr10:100015403delG	ENST00000260702.3	-	10	1672	c.1522delC	c.(1522-1524)agfs	p.Q508fs	RP11-34A14.3_ENST00000433374.1_RNA	NM_032211.6	NP_115587.6	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4	508	SRCR 4.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			breast(1)|endometrium(6)|kidney(1)|large_intestine(3)|lung(8)|ovary(4)|prostate(1)|skin(2)	26		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		CCGTGCCTCTGGCACTGCTGC	0.667													15	48	---	---	---	---					
