Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TRAK2	66008	broad.mit.edu	37	2	202272251	202272251	+	Missense_Mutation	SNP	T	T	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr2:202272251T>A	ENST00000332624.3	-	3	589	c.161A>T	c.(160-162)tAt>tTt	p.Y54F	TRAK2_ENST00000430254.1_Missense_Mutation_p.Y54F	NM_015049.2	NP_055864.2	O60296	TRAK2_HUMAN	trafficking protein, kinesin binding 2	54						early endosome|plasma membrane	GABA receptor binding			endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(6)|lung(12)|ovary(1)|skin(1)	23						TTTTAGCCTATACTGTGGTAG	0.448000													18	46					0	0	1	0	0
UBBP4	0	broad.mit.edu	37	17	21731144	21731144	+	Missense_Mutation	SNP	T	T	G	rs149119138	by1000genomes	TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr17:21731144T>G	ENST00000584755.1	+	2	843	c.446T>G	c.(445-447)cTg>cGg	p.L149R	UBBP4_ENST00000583708.1_3'UTR|UBBP4_ENST00000578713.1_Missense_Mutation_p.L149R|UBBP4_ENST00000584398.1_3'UTR														p.L149R(18)		endometrium(9)|kidney(4)|lung(4)|prostate(3)|urinary_tract(4)	24						GTCCTGCGTCTGAGAGGTGGT	0.542000													4	67					0	0	1	0	0
COG7	91949	broad.mit.edu	37	16	23456408	23456408	+	Silent	SNP	G	G	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr16:23456408G>A	ENST00000307149.5	-	3	581	c.396C>T	c.(394-396)agC>agT	p.S132S		NM_153603.3	NP_705831.1	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	132					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding			breast(1)|central_nervous_system(1)|endometrium(7)|large_intestine(9)|liver(1)|lung(7)|urinary_tract(1)	27				GBM - Glioblastoma multiforme(48;0.0401)		CGCTCAACGTGCTCCACTTAT	0.448000													29	92					0	0	1	0	0
CTDSP2	10106	broad.mit.edu	37	12	58217721	58217721	+	Missense_Mutation	SNP	G	G	C			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr12:58217721G>C	ENST00000398073.2	-	7	959	c.656C>G	c.(655-657)tCg>tGg	p.S219W	CTDSP2_ENST00000547701.1_Missense_Mutation_p.S67W|CTDSP2_ENST00000548823.1_Missense_Mutation_p.S46W	NM_005730.3	NP_005721.3	O14595	CTDS2_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2	219	FCP1 homology.				protein dephosphorylation	nucleus|soluble fraction	CTD phosphatase activity|metal ion binding			breast(1)|central_nervous_system(1)|endometrium(1)|kidney(1)|lung(1)|prostate(2)	7	all_neural(12;0.00559)|Glioma(12;0.0143)|Melanoma(17;0.122)					AGAAGCAGGCGAGTTGTCCAG	0.582000													6	18					0	0	1	0	0
LINC00969	0	broad.mit.edu	37	3	195400728	195400728	+	RNA	SNP	A	A	G	rs12107841	by1000genomes	TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr3:195400728A>G	ENST00000445430.1	+	0	1324																											GATTGTGCCCAGCCTGTACGC	0.587000													4	24					0	0	1	0	0
IRX6	79190	broad.mit.edu	37	16	55361281	55361281	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr16:55361281C>T	ENST00000290552.7	+	3	1709	c.377C>T	c.(376-378)cCc>cTc	p.P126L	RP11-26L20.3_ENST00000558730.2_RNA|IRX6_ENST00000558315.1_3'UTR	NM_024335.2	NP_077311.2	P78412	IRX6_HUMAN	iroquois homeobox 6	126						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.P126L(1)		breast(2)|central_nervous_system(5)|endometrium(3)|kidney(2)|large_intestine(6)|liver(2)|lung(10)|ovary(1)|prostate(1)|upper_aerodigestive_tract(1)	33						GCCTATTATCCCTATGAGCGG	0.512000													14	48					0	0	1	0	0
GPR135	64582	broad.mit.edu	37	14	59930963	59930963	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr14:59930963G>A	ENST00000395116.1	-	1	1097	c.982C>T	c.(982-984)Cgc>Tgc	p.R328C		NM_022571.5	NP_072093.2	Q8IZ08	GP135_HUMAN	G protein-coupled receptor 135	328						integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(1)|endometrium(1)|large_intestine(1)|liver(1)|lung(5)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	13				OV - Ovarian serous cystadenocarcinoma(108;0.134)		GTGGCCGTGCGCACCTCGCTG	0.672000													3	31					0	0	1	0	0
GDAP1	54332	broad.mit.edu	37	8	75263599	75263599	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr8:75263599C>T	ENST00000220822.7	+	2	288	c.208C>T	c.(208-210)Cgt>Tgt	p.R70C	GDAP1_ENST00000521096.1_Intron|GDAP1_ENST00000434412.2_Missense_Mutation_p.R2C	NM_001040875.2|NM_018972.2	NP_001035808.1|NP_061845.2	Q8TB36	GDAP1_HUMAN	ganglioside induced differentiation associated protein 1	70	GST N-terminal.					cytoplasm		p.R70C(1)		endometrium(1)|kidney(1)|large_intestine(1)|lung(3)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	10	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			TTGGTTTATGCGTTTGAACTC	0.453000													4	180					0	0	1	0	0
OXA1L	5018	broad.mit.edu	37	14	23235834	23235834	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr14:23235834G>A	ENST00000285848.5	+	1	104	c.104G>A	c.(103-105)cGc>cAc	p.R35H		NM_005015.3	NP_005006.3	Q15070	OXA1L_HUMAN	oxidase (cytochrome c) assembly 1-like	0					aerobic respiration|mitochondrial proton-transporting ATP synthase complex assembly|mitochondrial respiratory chain complex I assembly|negative regulation of ATPase activity|negative regulation of oxidoreductase activity|protein insertion into membrane|protein tetramerization	integral to mitochondrial membrane|mitochondrial respiratory chain|protein complex	protein homodimerization activity|ribosome binding			central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(5)|lung(5)|skin(2)	19	all_cancers(95;8.44e-05)			GBM - Glioblastoma multiforme(265;0.0096)		CTTCATGCCCGCCTCCAAAAG	0.522000													4	137					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97141496	97141496	+	Missense_Mutation	SNP	C	C	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr10:97141496C>A	ENST00000371247.2	-	18	1788	c.1599G>T	c.(1597-1599)aaG>aaT	p.K533N	SORBS1_ENST00000347291.4_Missense_Mutation_p.K401N|SORBS1_ENST00000354106.3_Missense_Mutation_p.K503N|SORBS1_ENST00000361941.3_Missense_Mutation_p.K533N|SORBS1_ENST00000371239.1_Missense_Mutation_p.K332N|SORBS1_ENST00000277982.5_Missense_Mutation_p.K555N|SORBS1_ENST00000474353.2_5'UTR|SORBS1_ENST00000371241.1_Missense_Mutation_p.K323N|SORBS1_ENST00000371227.4_Missense_Mutation_p.K487N|SORBS1_ENST00000393949.1_Missense_Mutation_p.K503N|SORBS1_ENST00000371246.2_Missense_Mutation_p.K555N|SORBS1_ENST00000306402.6_Missense_Mutation_p.K364N|SORBS1_ENST00000353505.5_Missense_Mutation_p.K418N|SORBS1_ENST00000371245.3_Missense_Mutation_p.K418N|SORBS1_ENST00000371249.2_Missense_Mutation_p.K455N|SORBS1_ENST00000607232.1_Missense_Mutation_p.K322N			Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1	533					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			NS(1)|breast(3)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(7)|lung(19)|prostate(3)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)	42		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		CGTAAATGCTCTTGGGCTCTG	0.398000													13	54					2.27111e-07	2.4686e-07	1	1	0
CDC73	79577	broad.mit.edu	37	1	193219826	193219826	+	Nonsense_Mutation	SNP	C	C	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr1:193219826C>A	ENST00000367435.3	+	17	1764	c.1580C>A	c.(1579-1581)tCg>tAg	p.S527*	CDC73_ENST00000477868.1_3'UTR	NM_024529.4	NP_078805.3	Q6P1J9	CDC73_HUMAN	cell division cycle 73	527					cell cycle|histone H2B ubiquitination|histone monoubiquitination|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding			breast(2)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(8)|lung(14)|ovary(1)|pancreas(1)|parathyroid(51)|skin(1)|upper_aerodigestive_tract(1)	87						AAGCATAAATCGCACTTGAGA	0.294000													4	40					0.014758	0.014758	1	1	0
MYO1H	283446	broad.mit.edu	37	12	109844593	109844593	+	Splice_Site	SNP	G	G	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr12:109844593G>A	ENST00000310903.5	+	9	1021		c.e9-1		MYO1H_ENST00000431443.2_Splice_Site|MYO1H_ENST00000542883.1_Splice_Site			B4DNW6	B4DNW6_HUMAN	myosin IH							myosin complex	motor activity			NS(1)|breast(1)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(9)|lung(17)|prostate(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	47						TTTACATGCAGCTCCTGGGGG	0.433000													7	40					0	0	1	0	0
SLC9A8	23315	broad.mit.edu	37	20	48491289	48491289	+	Missense_Mutation	SNP	C	C	A			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr20:48491289C>A	ENST00000417961.1	+	11	1264	c.1054C>A	c.(1054-1056)Cac>Aac	p.H352N	SLC9A8_ENST00000539601.1_Missense_Mutation_p.H117N|SLC9A8_ENST00000361573.2_Missense_Mutation_p.H336N|SLC9A8_ENST00000541138.1_Missense_Mutation_p.H36N	NM_001260491.1|NM_015266.2	NP_001247420.1|NP_056081.1	Q9Y2E8	SL9A8_HUMAN	solute carrier family 9, subfamily A (NHE8, cation proton antiporter 8), member 8	336						Golgi membrane|integral to membrane	sodium:hydrogen antiporter activity			NS(1)|autonomic_ganglia(1)|breast(1)|central_nervous_system(1)|endometrium(3)|large_intestine(8)|lung(9)|ovary(1)|upper_aerodigestive_tract(1)|urinary_tract(4)	30			BRCA - Breast invasive adenocarcinoma(9;3.91e-07)			CCACTACACGCACCATAACCT	0.557000													15	52					4.14922e-12	4.71502e-12	1	1	0
PRAMEF11	440560	broad.mit.edu	37	1	12887612	12887612	+	Missense_Mutation	SNP	T	T	C	rs60558629		TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr1:12887612T>C	ENST00000535591.1	-	3	440	c.245A>G	c.(244-246)cAt>cGt	p.H82R		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	82								p.H82R(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						GAAGCACCCATGGGCCATAGC	0.488000													6	164					0	0	1	0	0
YME1L1	10730	broad.mit.edu	37	10	27409416	27409416	+	Silent	SNP	T	T	C			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr10:27409416T>C	ENST00000326799.3	-	14	1678	c.1530A>G	c.(1528-1530)aaA>aaG	p.K510K	YME1L1_ENST00000376016.3_Silent_p.K453K|YME1L1_ENST00000375972.3_Silent_p.K420K	NM_139312.2	NP_647473.1	Q96TA2	YMEL1_HUMAN	YME1-like 1 ATPase	510					protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			breast(1)|endometrium(2)|kidney(4)|large_intestine(6)|lung(6)|ovary(1)|skin(2)|upper_aerodigestive_tract(1)	23						CTGTTCGACCTTTTACATCTG	0.313000													3	58					0	0	1	0	0
ZNF182	7569	broad.mit.edu	37	X	47836774	47836774	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chrX:47836774C>T	ENST00000396965.1	-	7	1062	c.712G>A	c.(712-714)Gca>Aca	p.A238T	ZNF182_ENST00000376943.3_Missense_Mutation_p.A219T|ZNF182_ENST00000305127.6_Missense_Mutation_p.A238T	NM_001178099.1	NP_001171570.1	P17025	ZN182_HUMAN	zinc finger protein 182	238					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(5)|kidney(1)|large_intestine(8)|lung(5)|ovary(2)|prostate(1)	22						TTCCTACATGCAGTACATTCA	0.418000													11	101					0	0	1	0	0
PRAMEF11	440560	broad.mit.edu	37	1	12887606	12887606	+	Missense_Mutation	SNP	C	C	G	rs58074988		TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr1:12887606C>G	ENST00000535591.1	-	3	446	c.251G>C	c.(250-252)tGc>tCc	p.C84S		NM_001146344.1	NP_001139816.1	O60813	PRA11_HUMAN	PRAME family member 11	84								p.C84S(1)		NS(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(5)|lung(7)|pancreas(2)|skin(4)|urinary_tract(1)	27						ATTGAGGAAGCACCCATGGGC	0.483000													4	159					0	0	1	0	0
COG7	91949	broad.mit.edu	37	16	23456409	23456409	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr16:23456409C>T	ENST00000307149.5	-	3	580	c.395G>A	c.(394-396)aGc>aAc	p.S132N		NM_153603.3	NP_705831.1	P83436	COG7_HUMAN	component of oligomeric golgi complex 7	132					intracellular protein transport|protein glycosylation|protein localization in Golgi apparatus|protein stabilization|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane|Golgi transport complex	protein binding			breast(1)|central_nervous_system(1)|endometrium(7)|large_intestine(9)|liver(1)|lung(7)|urinary_tract(1)	27				GBM - Glioblastoma multiforme(48;0.0401)		GCTCAACGTGCTCCACTTATC	0.443000													29	89					0	0	1	0	0
ST14	6768	broad.mit.edu	37	11	130068267	130068267	+	Silent	SNP	C	C	T			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr11:130068267C>T	ENST00000278742.5	+	13	1942	c.1524C>T	c.(1522-1524)tgC>tgT	p.C508C		NM_021978.3	NP_068813.1	Q9Y5Y6	ST14_HUMAN	suppression of tumorigenicity 14 (colon carcinoma)	508	LDL-receptor class A 2.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			central_nervous_system(1)|endometrium(3)|kidney(3)|large_intestine(4)|lung(12)|ovary(3)|pancreas(2)|prostate(1)|skin(3)	32	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	TCTGGGTCTGCGACAGTGTGA	0.672000													4	125					0	0	1	0	0
LRP8	7804	broad.mit.edu	37	1	53728167	53728167	+	Silent	SNP	C	C	T			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr1:53728167C>T	ENST00000306052.6	-	11	1826	c.1725G>A	c.(1723-1725)cgG>cgA	p.R575R	LRP8_ENST00000371454.2_Silent_p.R575R|LRP8_ENST00000354412.3_Silent_p.R446R|LRP8_ENST00000347547.2_Silent_p.R405R|LRP8_ENST00000465675.1_Silent_p.R128R|LRP8_ENST00000460214.1_5'UTR	NM_004631.4	NP_004622.2	Q14114	LRP8_HUMAN	low density lipoprotein receptor-related protein 8, apolipoprotein e receptor	575					cytokine-mediated signaling pathway|endocytosis|lipid metabolic process|platelet activation|proteolysis	caveola	calcium ion binding|very-low-density lipoprotein particle receptor activity			endometrium(2)|kidney(1)|large_intestine(6)|lung(9)|prostate(2)|skin(1)	21						CCAGTGTTTGCCGGTCCACAC	0.512000													4	145					0	0	1	0	0
SHISA4	149345	broad.mit.edu	37	1	201860531	201860531	+	Missense_Mutation	SNP	C	C	G			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr1:201860531C>G	ENST00000362011.6	+	4	669	c.382C>G	c.(382-384)Cag>Gag	p.Q128E	SHISA4_ENST00000464117.1_3'UTR	NM_198149.2	NP_937792.2	Q96DD7	SHSA4_HUMAN	shisa family member 4	128						integral to membrane				kidney(1)|lung(4)	5						CCATCTAGGCCAGGAGATTCC	0.592000													7	57					0	0	1	0	0
CASP5	838	broad.mit.edu	37	11	104879687	104879687	+	Frame_Shift_Del	DEL	T	T	-			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr11:104879687delT	ENST00000393141.2	-	2	98	c.67delA	c.(67-69)ggfs	p.R24fs	CASP5_ENST00000418434.1_Intron|CASP5_ENST00000393139.2_5'UTR|CASP5_ENST00000444749.2_Intron|CASP5_ENST00000531367.1_Intron|CASP5_ENST00000526056.1_Frame_Shift_Del_p.R24fs|CASP5_ENST00000260315.3_Frame_Shift_Del_p.R11fs	NM_001136112.1|NM_004347.3	NP_001129584.1|NP_004338.3	P51878	CASP5_HUMAN	caspase 5, apoptosis-related cysteine peptidase	11					apoptosis|cellular response to mechanical stimulus|proteolysis|regulation of apoptosis	intracellular	cysteine-type endopeptidase activity|protein binding			NS(1)|breast(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(5)|lung(15)|ovary(3)|skin(1)|urinary_tract(1)	35		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000943)|Epithelial(105;0.0104)|all cancers(92;0.042)		TTCTTACGCCTTTTTTTTTTG	0.388													10	64	---	---	---	---					
TPTE2P1	0	broad.mit.edu	37	13	25527490	25527491	+	RNA	INS	-	-	AAAAAG			TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chr13:25527490_25527491insAAAAAG	ENST00000429698.1	-	0	282																											AGGAAGGTTCTAAAAAAAATTT	0.252													3	5	---	---	---	---					
SHROOM4	57477	broad.mit.edu	37	X	50350711	50350713	+	In_Frame_Del	DEL	TCC	TCC	-	rs6614551		TCGA-WB-A816-01A-11D-A35I-08	TCGA-WB-A816-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	4003517b-1cc1-4c57-9c73-a7c176de0186	1f70da4e-abdb-47c0-a442-869d91605e68	g.chrX:50350711_50350713delTCC	ENST00000376020.2	-	6	3454_3456	c.3429_3431delGGA	c.(3427-3432)gaa>ga	p.EE1149del	SHROOM4_ENST00000289292.7_In_Frame_Del_p.EE1149del|SHROOM4_ENST00000460112.3_In_Frame_Del_p.EE1033del	NM_020717.3	NP_065768.2	Q9ULL8	SHRM4_HUMAN	shroom family member 4	1149	Glu-rich.				actin filament organization|brain development|cell morphogenesis|cognition	apical plasma membrane|basal plasma membrane|internal side of plasma membrane|nucleus	actin filament binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(6)|kidney(5)|large_intestine(6)|liver(1)|lung(20)|ovary(1)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	52	Ovarian(276;0.236)					ctcttcctcttcctcttcttctt	0.547													3	4	---	---	---	---					
