Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GIGYF2	26058	broad.mit.edu	37	2	233721515	233721515	+	Missense_Mutation	SNP	A	A	G			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr2:233721515A>G	ENST00000373566.3	+	30	4108	c.3911A>G	c.(3910-3912)aAt>aGt	p.N1304S	GIGYF2_ENST00000409451.3_Missense_Mutation_p.N1303S|GIGYF2_ENST00000409196.3_Missense_Mutation_p.N1276S|GIGYF2_ENST00000373563.4_Missense_Mutation_p.N1282S|GIGYF2_ENST00000409480.1_Missense_Mutation_p.N1304S|GIGYF2_ENST00000409547.1_Missense_Mutation_p.N1282S			Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2	1282					cell death		protein binding			NS(1)|biliary_tract(1)|breast(3)|central_nervous_system(4)|cervix(1)|endometrium(11)|kidney(2)|large_intestine(17)|lung(11)|ovary(5)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	63		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		TTTTCAGTCAATGCATCATCG	0.512000													13	78					0	0	1	0	0
MGAM	8972	broad.mit.edu	37	7	141766505	141766505	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr7:141766505C>T	ENST00000475668.2	+	41	4957	c.4903C>T	c.(4903-4905)Cgg>Tgg	p.R1635W	MGAM_ENST00000549489.2_Intron			O43451	MGA_HUMAN	maltase-glucoamylase (alpha-glucosidase)	1635	Glucoamylase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			cervix(1)|endometrium(1)|large_intestine(4)|lung(3)|ovary(2)|skin(2)	13	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CACTGTTGTGCGGCCTCTGCT	0.483000													4	144					0	0	1	0	0
VCP	7415	broad.mit.edu	37	9	35057381	35057381	+	Silent	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr9:35057381G>A	ENST00000358901.6	-	16	3202	c.2307C>T	c.(2305-2307)ggC>ggT	p.G769G		NM_007126.3	NP_009057.1	P55072	TERA_HUMAN	valosin containing protein	769					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			breast(3)|endometrium(2)|kidney(1)|large_intestine(4)|lung(10)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)	24			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			ACCTGAAGCTGCCAAAGCCCC	0.507000													5	384					0	0	1	0	0
EIF3K	27335	broad.mit.edu	37	19	39127527	39127527	+	Splice_Site	SNP	A	A	C			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr19:39127527A>C	ENST00000248342.4	+	8	797		c.e8-1		EIF3K_ENST00000592558.1_Splice_Site|EIF3K_ENST00000593149.1_Splice_Site|EIF3K_ENST00000588934.1_Splice_Site	NM_013234.2	NP_037366.1	Q9UBQ5	EIF3K_HUMAN	eukaryotic translation initiation factor 3, subunit K						regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex|nucleus	protein binding|ribosome binding|translation initiation factor activity		EIF3K/CYP39A1(2)	central_nervous_system(1)|endometrium(1)|lung(4)|ovary(1)|upper_aerodigestive_tract(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CCTTCCCCACAGGTGTGTCCA	0.532000													6	108					0	0	1	0	0
DMBT1	1755	broad.mit.edu	37	10	124392750	124392750	+	Missense_Mutation	SNP	C	C	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr10:124392750C>A	ENST00000338354.3	+	49	6160	c.6054C>A	c.(6052-6054)gaC>gaA	p.D2018E	DMBT1_ENST00000330163.4_Missense_Mutation_p.D1390E|DMBT1_ENST00000359586.6_Missense_Mutation_p.D738E|DMBT1_ENST00000368956.2_Missense_Mutation_p.D1390E|DMBT1_ENST00000368955.3_Missense_Mutation_p.D2008E|DMBT1_ENST00000344338.3_Missense_Mutation_p.D2008E|DMBT1_ENST00000368909.3_Missense_Mutation_p.D2018E			Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1	2018	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			breast(2)|central_nervous_system(7)|cervix(3)|endometrium(8)|kidney(1)|large_intestine(1)|lung(46)|prostate(1)|urinary_tract(3)	72		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CATCAGGGGACTTTTCCAGCC	0.507000													39	54					3.61848e-18	3.71899e-18	1	1	0
CSTF1	1477	broad.mit.edu	37	20	54972305	54972305	+	Missense_Mutation	SNP	G	G	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr20:54972305G>T	ENST00000217109.4	+	3	564	c.212G>T	c.(211-213)cGt>cTt	p.R71L	CSTF1_ENST00000493039.1_3'UTR	NM_001033521.1|NM_001324.2	NP_001028693.1|NP_001315.1	Q05048	CSTF1_HUMAN	cleavage stimulation factor, 3' pre-RNA, subunit 1, 50kDa	71					mRNA cleavage|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nucleoplasm	protein binding|RNA binding			central_nervous_system(2)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(2)|prostate(1)|skin(1)	15			Colorectal(105;0.202)			GCAATTGGTCGTTCAGATACT	0.428000													12	177					1.08611e-07	1.08611e-07	1	1	0
PADI3	51702	broad.mit.edu	37	1	17575683	17575683	+	Silent	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr1:17575683G>A	ENST00000375460.3	+	1	91	c.51G>A	c.(49-51)gcG>gcA	p.A17A		NM_016233.2	NP_057317.2	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	17					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			breast(1)|cervix(1)|endometrium(5)|kidney(1)|large_intestine(4)|liver(2)|lung(10)|ovary(2)|prostate(1)|skin(1)|stomach(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	32		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	CCACCAGCGCGGTGTGTGTGG	0.607000													3	45					0	0	1	0	0
TUBB8P7	0	broad.mit.edu	37	16	90162513	90162513	+	RNA	SNP	T	T	C			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr16:90162513T>C	ENST00000564451.1	+	0	1866				TUBB8P7_ENST00000567960.1_RNA														p.N415N(2)									GCAACATGAATGACCTGGTGT	0.537000													5	130					0	0	1	0	0
POTEC	388468	broad.mit.edu	37	18	14513764	14513764	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr18:14513764C>T	ENST00000358970.5	-	10	1429	c.1430G>A	c.(1429-1431)cGg>cAg	p.R477Q		NM_001137671.1	NP_001131143.1	B2RU33	POTEC_HUMAN	POTE ankyrin domain family, member C	477								p.R477Q(12)		NS(2)|breast(1)|endometrium(9)|kidney(13)|lung(14)|prostate(3)|skin(6)|soft_tissue(1)|urinary_tract(3)	52						AAGTTGTTTCCGGGTATCATT	0.358000													5	115					0	0	1	0	0
C10orf90	118611	broad.mit.edu	37	10	128118419	128118419	+	Splice_Site	SNP	T	T	C			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr10:128118419T>C	ENST00000284694.7	-	7	2018	c.1897_splice	c.e7-1	p.D633_splice	C10orf90_ENST00000480379.1_Splice_Site_p.D37_splice|C10orf90_ENST00000544758.1_Splice_Site_p.D730_splice|C10orf90_ENST00000454341.1_Splice_Site_p.D536_splice|C10orf90_ENST00000356858.3_Splice_Site_p.D586_splice	NM_001004298.2	NP_001004298.2	Q96M02	CJ090_HUMAN	chromosome 10 open reading frame 90	633										NS(1)|breast(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(19)|liver(1)|lung(29)|ovary(2)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(2)	65		all_epithelial(44;4.51e-05)|all_lung(145;0.0068)|Lung NSC(174;0.0105)|Colorectal(57;0.0848)|all_neural(114;0.0936)|Breast(234;0.203)		COAD - Colon adenocarcinoma(40;0.0442)|Colorectal(40;0.0479)		GAACAAGTTATCTGGAAAAAA	0.358000													10	71					0	0	1	0	0
CDKL5	6792	broad.mit.edu	37	X	18616728	18616728	+	Silent	SNP	T	T	C			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chrX:18616728T>C	ENST00000379989.3	+	12	1257	c.972T>C	c.(970-972)tcT>tcC	p.S324S	CDKL5_ENST00000379996.3_Silent_p.S324S	NM_001037343.1	NP_001032420.1	O76039	CDKL5_HUMAN	cyclin-dependent kinase-like 5	324					neuron migration|positive regulation of axon extension|positive regulation of dendrite morphogenesis|positive regulation of Rac GTPase activity|protein autophosphorylation	dendrite cytoplasm|dendritic growth cone|nucleus	ATP binding|cyclin-dependent protein kinase activity|Rac GTPase binding			NS(2)|breast(1)|central_nervous_system(1)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(11)|lung(12)|ovary(4)|skin(5)|stomach(1)	44	Hepatocellular(33;0.183)					GCACATTGTCTAATAGGTAAA	0.398000													10	84					0	0	1	0	0
AC004702.2	0	broad.mit.edu	37	17	20224797	20224797	+	RNA	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr17:20224797C>T	ENST00000580225.1	+	0	105				CCDC144CP_ENST00000340196.4_RNA																							GGTGGAAAAACAGCGTCGGCA	0.637000													5	129					0	0	1	0	0
PFKM	5213	broad.mit.edu	37	12	48529135	48529135	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr12:48529135G>A	ENST00000340802.6	+	12	1342	c.1118G>A	c.(1117-1119)gGt>gAt	p.G373D	PFKM_ENST00000395233.2_Intron|PFKM_ENST00000359794.5_Missense_Mutation_p.G302D|PFKM_ENST00000312352.7_Missense_Mutation_p.G302D|PFKM_ENST00000551804.1_Intron|PFKM_ENST00000547587.1_Missense_Mutation_p.G302D	NM_001166686.1	NP_001160158.1	P08237	K6PF_HUMAN	phosphofructokinase, muscle	302					fructose 6-phosphate metabolic process|glycolysis|muscle cell homeostasis	6-phosphofructokinase complex|apical plasma membrane	6-phosphofructokinase activity|ATP binding|identical protein binding|kinase binding|metal ion binding|protein C-terminus binding			NS(3)|central_nervous_system(1)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(4)|lung(16)|ovary(2)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	35						GTGCAGAGGGGTGGGACGCCA	0.572000													10	50					0	0	1	0	0
PTBP1	5725	broad.mit.edu	37	19	804908	804908	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr19:804908C>T	ENST00000356948.6	+	7	1109	c.686C>T	c.(685-687)gCg>gTg	p.A229V	PTBP1_ENST00000349038.4_Missense_Mutation_p.A229V|PTBP1_ENST00000350092.4_Intron|PTBP1_ENST00000394601.4_Missense_Mutation_p.A229V	NM_002819.4	NP_002810.1	P26599	PTBP1_HUMAN	polypyrimidine tract binding protein 1	229	RRM 2.				negative regulation of muscle cell differentiation|nuclear mRNA splicing, via spliceosome|regulation of alternative nuclear mRNA splicing, via spliceosome	heterogeneous nuclear ribonucleoprotein complex|nucleolus|nucleoplasm	mRNA binding|nucleotide binding|poly-pyrimidine tract binding|protein binding			NS(1)|breast(1)|central_nervous_system(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(1)|lung(4)|ovary(1)|skin(2)|upper_aerodigestive_tract(4)	19		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTGCAGTATGCGGACCCCGTG	0.662000													4	162					0	0	1	0	0
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr9:20414346G>A	ENST00000380338.4	-	5	784	c.498C>T	c.(496-498)agC>agT	p.S166S	MLLT3_ENST00000355930.6_5'UTR|MLLT3_ENST00000475957.1_5'UTR|MLLT3_ENST00000429426.2_Silent_p.S163S	NM_004529.2	NP_004520.2	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3	166	Poly-Ser.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding	p.S166S(4)		central_nervous_system(1)|cervix(1)|endometrium(13)|haematopoietic_and_lymphoid_tissue(1)|kidney(7)|large_intestine(6)|lung(24)|ovary(1)|prostate(4)|skin(1)|urinary_tract(7)	66				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		tgctgctactgctgctgctgc	0.527000			T	MLL	ALL								4	70					0	0	1	0	0
CGNL1	84952	broad.mit.edu	37	15	57730597	57730597	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr15:57730597G>A	ENST00000281282.5	+	2	478	c.400G>A	c.(400-402)Gac>Aac	p.D134N		NM_001252335.1|NM_032866.4	NP_001239264.1|NP_116255.2	Q0VF96	CGNL1_HUMAN	cingulin-like 1	134	Head.					myosin complex|tight junction	motor activity			autonomic_ganglia(1)|breast(1)|central_nervous_system(2)|endometrium(5)|kidney(4)|large_intestine(12)|lung(14)|ovary(4)|prostate(4)|skin(10)|stomach(2)|upper_aerodigestive_tract(1)	60				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGATCGCAAAGACGGGTCTGT	0.473000													4	63					0	0	1	0	0
TOX	9760	broad.mit.edu	37	8	59720342	59720342	+	Splice_Site	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr8:59720342C>T	ENST00000361421.1	-	9	1765	c.1544_splice	c.e9-1	p.G515_splice		NM_014729.2	NP_055544.1	O94900	TOX_HUMAN	thymocyte selection-associated high mobility group box	515						nucleus	DNA binding			endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(11)|lung(13)|prostate(1)|skin(2)|stomach(1)	33		all_cancers(86;0.165)|Myeloproliferative disorder(644;0.00452)|all_lung(136;0.036)|Lung NSC(129;0.0464)|all_epithelial(80;0.0607)				TCTGCATGCCCCTGTAGGAAG	0.448000											OREG0018787	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	39					0	0	1	0	0
ITIH3	3699	broad.mit.edu	37	3	52840340	52840340	+	Silent	SNP	T	T	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr3:52840340T>A	ENST00000449956.2	+	18	1980	c.1974T>A	c.(1972-1974)atT>atA	p.I658I	ITIH3_ENST00000416872.2_Intron	NM_002217.3	NP_002208.3	Q06033	ITIH3_HUMAN	inter-alpha-trypsin inhibitor heavy chain 3	658					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			breast(1)|central_nervous_system(1)|endometrium(2)|large_intestine(6)|liver(1)|lung(6)|ovary(2)|prostate(3)|skin(1)|stomach(1)|urinary_tract(1)	25				BRCA - Breast invasive adenocarcinoma(193;7e-05)|Kidney(197;0.000656)|KIRC - Kidney renal clear cell carcinoma(197;0.000794)|OV - Ovarian serous cystadenocarcinoma(275;0.0496)		TCATCCAAATTCCGGAGAAAG	0.572000													4	44					0	0	1	0	0
MORC3	23515	broad.mit.edu	37	21	37716913	37716913	+	Missense_Mutation	SNP	C	C	G			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr21:37716913C>G	ENST00000400485.1	+	7	869	c.793C>G	c.(793-795)Cag>Gag	p.Q265E	MORC3_ENST00000487909.1_3'UTR	NM_015358.2	NP_056173.1	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	265					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			breast(2)|endometrium(5)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(7)|lung(9)|ovary(2)|prostate(3)|upper_aerodigestive_tract(1)|urinary_tract(2)	35						GCCAAGAATGCAGATCATCCT	0.373000													7	60					0	0	1	0	0
TSGA13	114960	broad.mit.edu	37	7	130356501	130356501	+	Splice_Site	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr7:130356501C>T	ENST00000456951.1	-	8	1509	c.658_splice	c.e8+1	p.A220_splice	TSGA13_ENST00000356588.3_Splice_Site_p.A220_splice			Q96PP4	TSG13_HUMAN	testis specific, 13	220										endometrium(1)|kidney(3)|large_intestine(3)|lung(6)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	18	Melanoma(18;0.0435)					AGGAGCTTACCATCTTTCCTC	0.448000													8	222					0	0	1	0	0
GGT7	2686	broad.mit.edu	37	20	33449307	33449307	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr20:33449307G>A	ENST00000336431.5	-	4	660	c.616C>T	c.(616-618)Cgg>Tgg	p.R206W		NM_178026.2	NP_821158.2	Q9UJ14	GGT7_HUMAN	gamma-glutamyltransferase 7	206					glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			NS(2)|breast(1)|kidney(3)|large_intestine(5)|lung(6)|ovary(1)|skin(2)	20						GCGGACTCCCGGAAATCAATT	0.557000													7	40					0	0	1	0	0
RPS6KA4	8986	broad.mit.edu	37	11	64136019	64136019	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr11:64136019G>A	ENST00000528057.1	+	11	1347	c.1259G>A	c.(1258-1260)cGc>cAc	p.R420H	RPS6KA4_ENST00000334205.4_Missense_Mutation_p.R427H|RPS6KA4_ENST00000294261.4_Intron	NM_001006944.1	NP_001006945.1	O75676	KS6A4_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide 4	427	Protein kinase 2.				axon guidance|histone phosphorylation|interleukin-1-mediated signaling pathway|intracellular protein kinase cascade|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|magnesium ion binding|mitogen-activated protein kinase p38 binding|ribosomal protein S6 kinase activity			breast(1)|endometrium(3)|lung(7)|ovary(1)|prostate(1)	13						GTGTGTCGCCGCTGCCGCCAG	0.701000													5	1					0	0	1	0	0
SUPT6H	6830	broad.mit.edu	37	17	27023888	27023888	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr17:27023888C>T	ENST00000314616.6	+	30	4280	c.3997C>T	c.(3997-3999)Cca>Tca	p.P1333S	SUPT6H_ENST00000347486.4_Missense_Mutation_p.P1333S	NM_003170.3	NP_003161.2	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog (S. cerevisiae)	1333	SH2.				chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			NS(4)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(9)|kidney(2)|large_intestine(15)|lung(21)|ovary(3)|prostate(1)|skin(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	64	Lung NSC(42;0.00431)					GATCGCACACCCATCCTTCCA	0.498000													16	32					0	0	1	0	0
HDAC2	3066	broad.mit.edu	37	6	114270226	114270226	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr6:114270226T>C	ENST00000519065.1	-	8	1134	c.758A>G	c.(757-759)tAt>tGt	p.Y253C	HDAC2_ENST00000368632.2_Missense_Mutation_p.Y223C|HDAC2_ENST00000398283.2_Missense_Mutation_p.Y347C|HDAC2_ENST00000519108.1_Missense_Mutation_p.Y223C			Q92769	HDAC2_HUMAN	histone deacetylase 2	253	Histone deacetylase.				blood coagulation|dendrite development|embryonic digit morphogenesis|epidermal cell differentiation|eyelid development in camera-type eye|fungiform papilla formation|hair follicle placode formation|maintenance of chromatin silencing|negative regulation of apoptosis|negative regulation of cell cycle|negative regulation of neuron projection development|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|odontogenesis of dentine-containing tooth|positive regulation of cell proliferation|positive regulation of proteolysis|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|ESC/E(Z) complex|NuRD complex|Sin3 complex	chromatin binding|enzyme binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|sequence-specific DNA binding|transcription factor binding			biliary_tract(1)|central_nervous_system(5)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(2)|lung(11)|ovary(1)|prostate(1)|skin(2)	27		all_cancers(87;0.000629)|all_epithelial(87;0.00274)|Colorectal(196;0.0317)|all_lung(197;0.24)		all cancers(137;0.00318)|OV - Ovarian serous cystadenocarcinoma(136;0.00569)|Epithelial(106;0.0112)|GBM - Glioblastoma multiforme(226;0.0832)	Vorinostat(DB02546)	ACTAGGTTGATACATCTCCAT	0.363000													6	102					0	0	1	0	0
DNASE1	1773	broad.mit.edu	37	16	3706108	3706108	+	Missense_Mutation	SNP	C	C	G			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr16:3706108C>G	ENST00000246949.5	+	4	3451	c.242C>G	c.(241-243)gCa>gGa	p.A81G	DNASE1_ENST00000414110.2_Missense_Mutation_p.H2D|DNASE1_ENST00000407479.1_Missense_Mutation_p.A81G	NM_005223.3	NP_005214.2	P24855	DNAS1_HUMAN	deoxyribonuclease I	81					apoptosis|DNA catabolic process	extracellular region|nuclear envelope	actin binding|deoxyribonuclease I activity			lung(1)	1		Ovarian(90;0.0261)		Kidney(780;0.0556)	Dornase Alfa(DB00003)	TCCAGGGATGCACCAGACACC	0.597000													7	54					0	0	1	0	0
RP11-114H24.7	0	broad.mit.edu	37	15	78211648	78211648	+	RNA	SNP	A	A	G			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr15:78211648A>G	ENST00000565869.1	+	0	111				RP11-114H24.2_ENST00000567226.1_RNA																							CGCCAGGGATAGGGGCTCAGC	0.522000													3	59					0	0	1	0	0
LSS	4047	broad.mit.edu	37	21	47648646	47648646	+	Translation_Start_Site	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr21:47648646G>A	ENST00000457828.2	-	0	92				LSS_ENST00000522411.1_Splice_Site_p.T5_splice|LSS_ENST00000356396.4_Splice_Site_p.T5_splice|LSS_ENST00000397728.3_Splice_Site_p.T5_splice|LSS_ENST00000464357.1_5'UTR	NM_001145437.1	NP_001138909.1	P48449	ERG7_HUMAN	lanosterol synthase (2,3-oxidosqualene-lanosterol cyclase)						cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity			cervix(1)|endometrium(6)|kidney(1)|large_intestine(3)|liver(1)|lung(7)|skin(1)|urinary_tract(1)	21	Breast(49;0.214)					GGGGACTCACGTGCCCTCCGT	0.746000													4	12					0	0	1	0	0
LGALS14	56891	broad.mit.edu	37	19	40199856	40199856	+	Missense_Mutation	SNP	G	G	C	rs111361406	byFrequency	TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr19:40199856G>C	ENST00000392052.3	+	4	546	c.323G>C	c.(322-324)cGc>cCc	p.R108P	LGALS14_ENST00000360675.3_Missense_Mutation_p.R137P	NM_020129.2	NP_064514.1	Q8TCE9	PPL13_HUMAN	lectin, galactoside-binding, soluble, 14	108	Galectin.					nucleus	sugar binding	p.R108L(1)|p.R137L(1)		breast(1)|endometrium(2)|kidney(1)|large_intestine(3)|lung(2)|ovary(1)|skin(2)|stomach(2)	14	all_cancers(60;4.39e-06)|all_lung(34;6.76e-08)|Lung NSC(34;7.98e-08)|Ovarian(47;0.06)	Myeloproliferative disorder(2;0.0741)	Epithelial(26;1.08e-24)|OV - Ovarian serous cystadenocarcinoma(5;1.92e-24)|all cancers(26;4.12e-22)			AATGGCCAACGCATTTACAAC	0.468000													9	101					0	0	1	0	0
ITGAV	3685	broad.mit.edu	37	2	187455082	187455082	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr2:187455082G>A	ENST00000261023.3	+	1	291	c.17G>A	c.(16-18)cGg>cAg	p.R6Q	ITGAV_ENST00000374907.3_Missense_Mutation_p.R6Q	NM_002210.3	NP_002201.1	P06756	ITAV_HUMAN	integrin, alpha V	6					angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			breast(3)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(6)|lung(19)|ovary(2)|prostate(2)|skin(1)|stomach(1)|upper_aerodigestive_tract(2)|urinary_tract(3)	47			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		TTTCCGCCGCGGCGACGGCTG	0.741000													6	40					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33345744	33345744	+	Silent	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr20:33345744C>T	ENST00000374796.2	-	8	3377	c.807G>A	c.(805-807)caG>caA	p.Q269Q	NCOA6_ENST00000359003.2_Silent_p.Q269Q			Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	269	CREBBP-binding region.|Gln-rich.|NCOA1-binding region.|TBP/GTF2A-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding	p.Q269Q(15)		NS(2)|breast(6)|central_nervous_system(3)|cervix(1)|endometrium(9)|kidney(8)|large_intestine(16)|lung(37)|ovary(4)|prostate(5)|skin(13)|upper_aerodigestive_tract(2)|urinary_tract(1)	107						gctgctgctgctgttgttgtt	0.537000													4	45					0	0	1	0	0
RP11-798G7.5	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs149697015	by1000genomes	TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr17:43587569G>C	ENST00000253803.2	+	0	267				LRRC37A4P_ENST00000579913.1_RNA																							aactccgtctgaaaagaaaag	0.443000													3	56					0	0	1	0	0
GAD1	2571	broad.mit.edu	37	2	171675133	171675133	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr2:171675133C>T	ENST00000358196.3	+	2	582	c.32C>T	c.(31-33)aCc>aTc	p.T11I	GAD1_ENST00000375272.1_Missense_Mutation_p.T11I|GAD1_ENST00000344257.5_Missense_Mutation_p.T11I|GAD1_ENST00000429023.1_3'UTR	NM_000817.2	NP_000808.2	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 (brain, 67kDa)	11					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(11)|lung(15)|ovary(1)|urinary_tract(2)	35					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	TCGTCCGCAACCTCCTCGAAC	0.607000													19	81					0	0	1	0	0
LINC00691	0	broad.mit.edu	37	3	24138347	24138349	+	RNA	DEL	ATC	ATC	-			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr3:24138347_24138349delATC	ENST00000436123.1	-	0	2374_2376																											catcaaaattatcatcatcatca	0.345													2	4	---	---	---	---					
ANKHD1	54882	broad.mit.edu	37	5	139907954	139907960	+	Frame_Shift_Del	DEL	CTTTGGG	CTTTGGG	-			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr5:139907954_139907960delCTTTGGG	ENST00000297183.6	+	29	5547_5553	c.5423_5429delCTTTGGG	c.(5422-5430)ctfs	p.PLG1808fs	ANKHD1-EIF4EBP3_ENST00000532219.1_Frame_Shift_Del_p.PLG1808fs|ANKHD1_ENST00000360839.2_Frame_Shift_Del_p.PLG1808fs|ANKHD1_ENST00000544120.1_Frame_Shift_Del_p.PLG191fs	NM_020690.5	NP_065741.3			ankyrin repeat and KH domain containing 1											breast(2)|endometrium(8)|kidney(6)|large_intestine(14)|lung(18)|ovary(5)|prostate(2)|skin(3)|urinary_tract(2)	60			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AATGCATTTCCTTTGGGTGCTCCAACT	0.406													8	141	---	---	---	---					
CIZ1	25792	broad.mit.edu	37	9	130953109	130953111	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr9:130953109_130953111delGCT	ENST00000538431.1	-	2	273_275	c.26_28delAGC	c.(25-30)ctc>c	p.QL9del	CIZ1_ENST00000325721.8_In_Frame_Del_p.QL9del|CIZ1_ENST00000277465.4_In_Frame_Del_p.QL9del|CIZ1_ENST00000357558.5_In_Frame_Del_p.QL9del|CIZ1_ENST00000393608.1_In_Frame_Del_p.QL9del|CIZ1_ENST00000541172.1_5'UTR|CIZ1_ENST00000372948.3_In_Frame_Del_p.QL9del|CIZ1_ENST00000372954.1_In_Frame_Del_p.QL9del|CIZ1_ENST00000476727.2_5'UTR|CIZ1_ENST00000372938.5_In_Frame_Del_p.QL9del	NM_001257975.1	NP_001244904.1	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1	9	Gln-rich.			Missing (in Ref. 7; AAF23231).		nucleus	nucleic acid binding|protein binding|zinc ion binding			NS(1)|breast(2)|central_nervous_system(2)|cervix(1)|endometrium(3)|kidney(1)|large_intestine(8)|liver(1)|lung(9)|ovary(3)|prostate(2)|urinary_tract(2)	35						tgttgctggagctgctgctgctg	0.611													3	6	---	---	---	---					
DIAPH3	81624	broad.mit.edu	37	13	60582733	60582734	+	Frame_Shift_Ins	INS	-	-	T			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr13:60582733_60582734insT	ENST00000400324.4	-	9	1178_1179	c.958_959insA	c.(958-960)tgafs	p.*320fs	DIAPH3_ENST00000465066.1_5'UTR|DIAPH3_ENST00000400330.1_Frame_Shift_Ins_p.*320fs|DIAPH3_ENST00000267215.4_Frame_Shift_Ins_p.*320fs|DIAPH3_ENST00000400320.1_Frame_Shift_Ins_p.*274fs|DIAPH3_ENST00000377908.2_Frame_Shift_Ins_p.*309fs|DIAPH3_ENST00000400319.1_Frame_Shift_Ins_p.*250fs	NM_001042517.1|NM_001258366.1	NP_001035982.1|NP_001245295.1	Q9NSV4	DIAP3_HUMAN	diaphanous-related formin 3	320	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(1)|large_intestine(7)|liver(1)|lung(20)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	46		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		AAATCTGTCAATTTTTTTTTCT	0.322													10	176	---	---	---	---					
LINC00639	0	broad.mit.edu	37	14	39304594	39304594	+	RNA	DEL	T	T	-			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr14:39304594delT	ENST00000553932.1	-	0	3825																											CAGAGAATGATGGAGAAGCCT	0.567													2	4	---	---	---	---					
SNHG14	0	broad.mit.edu	37	15	25442755	25442755	+	RNA	DEL	G	G	-			TCGA-WB-A81E-01A-11D-A35I-08	TCGA-WB-A81E-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	8cbc6844-3fc6-4bdd-90ce-6f84c44599bc	fb0abb31-3189-40f1-8ccb-24f94ef1c578	g.chr15:25442755delG	ENST00000424208.1	+	0	1636				SNHG14_ENST00000424333.1_RNA|SNORD115-15_ENST00000364809.1_RNA	NR_003305.1																						ATGTTCTGAAGAGAGGTGATG	0.498													27	485	---	---	---	---					
