Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MAP1B	4131	broad.mit.edu	37	5	71492290	71492290	+	Silent	SNP	G	G	A	rs150527364		TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr5:71492290G>A	ENST00000296755.7	+	5	3406	c.3108G>A	c.(3106-3108)ccG>ccA	p.P1036P		NM_005909.3	NP_005900.2	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	1036						microtubule|microtubule associated complex	structural molecule activity	p.P1036P(1)		NS(1)|breast(1)|central_nervous_system(1)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(42)|liver(1)|lung(28)|ovary(1)|pancreas(1)|prostate(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	104		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		AATATGAGCCGGAAAAAATGG	0.517000													3	50					0	0	1	0	0
IGHG4	0	broad.mit.edu	37	14	106090814	106090814	+	RNA	SNP	C	C	G			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr14:106090814C>G	ENST00000390543.2	-	0	982																											CCCTGGCACTCATTTACCCAG	0.632000													10	47					0	0	1	0	0
LPPR1	0	broad.mit.edu	37	9	104075136	104075136	+	Silent	SNP	G	G	T	rs144819698		TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr9:104075136G>T	ENST00000374874.3	+	6	1132	c.693G>T	c.(691-693)ctG>ctT	p.L231L	LPPR1_ENST00000395056.2_Silent_p.L231L	NM_207299.1	NP_997182.1	Q8TBJ4	LPPR1_HUMAN		231						integral to membrane	catalytic activity										AGCCGGTGCTGTGCCTCGGAA	0.562000													4	74					0.00909568	0.00909568	1	1	0
P4HTM	54681	broad.mit.edu	37	3	49028318	49028318	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr3:49028318G>A	ENST00000343546.4	+	2	775	c.407G>A	c.(406-408)cGa>cAa	p.R136Q	P4HTM_ENST00000468374.1_3'UTR|P4HTM_ENST00000383729.4_Missense_Mutation_p.R136Q	NM_177938.2	NP_808807.2	Q9NXG6	P4HTM_HUMAN	prolyl 4-hydroxylase, transmembrane (endoplasmic reticulum)	136						endoplasmic reticulum membrane|integral to membrane	calcium ion binding|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			NS(1)|breast(2)|kidney(1)|large_intestine(1)|lung(10)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|urinary_tract(1)	21					Vitamin C(DB00126)	CACTTCATCCGAACCCTCAGC	0.642000													5	13					0	0	1	0	0
PKD1L2	114780	broad.mit.edu	37	16	81253679	81253679	+	Silent	SNP	C	C	A			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr16:81253679C>A	ENST00000599697.1	-	1	296	c.297G>T	c.(295-297)acG>acT	p.T99T	PKD1L2_ENST00000525539.1_RNA|PKD1L2_ENST00000337114.4_RNA			Q7Z442	PK1L2_HUMAN	polycystic kidney disease 1-like 2	99	C-type lectin.				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			breast(2)|central_nervous_system(2)|endometrium(2)|haematopoietic_and_lymphoid_tissue(2)|kidney(2)|large_intestine(9)|lung(20)|ovary(2)|pancreas(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	44						ACCTACCCTCCGTGGTTCCAT	0.488000													11	39					9.05144e-12	1.0444e-11	1	1	0
STOML3	0	broad.mit.edu	37	13	39544453	39544453	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr13:39544453C>T	ENST00000379631.4	-	5	729	c.385G>A	c.(385-387)Gca>Aca	p.A129T	STOML3_ENST00000423210.1_Missense_Mutation_p.A120T	NM_145286.2	NP_660329.1	Q8TAV4	STML3_HUMAN	stomatin (EPB72)-like 3	129						integral to membrane|plasma membrane				breast(1)|large_intestine(2)|lung(5)|ovary(1)|prostate(1)|skin(1)	11		Lung NSC(96;1.42e-05)|Prostate(109;0.00851)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;2.93e-08)|Epithelial(112;3.64e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00107)|BRCA - Breast invasive adenocarcinoma(63;0.00349)|GBM - Glioblastoma multiforme(144;0.0137)		TTAGCCACTGCTGAGACAGCA	0.458000													5	121					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713773	142713773	+	RNA	SNP	C	C	G			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr1:142713773C>G	ENST00000369381.2	-	0	832																											TCTTTTTCCACATTGTCATTT	0.284000													4	63					0	0	1	0	0
KMT2A	4297	broad.mit.edu	37	11	118376687	118376687	+	Silent	SNP	A	A	C			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr11:118376687A>C	ENST00000534358.1	+	27	10103	c.10080A>C	c.(10078-10080)tcA>tcC	p.S3360S	KMT2A_ENST00000389506.5_Silent_p.S3357S|KMT2A_ENST00000354520.4_Silent_p.S3319S	NM_001197104.1|NM_005933.3	NP_001184033.1|NP_005924.2			lysine (K)-specific methyltransferase 2A																		GTAGTGCGTCAGTTCCAGGAC	0.493000													27	53					0	0	1	0	0
LAMA4	3910	broad.mit.edu	37	6	112452193	112452193	+	Silent	SNP	G	G	A			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr6:112452193G>A	ENST00000230538.7	-	29	4342	c.3945C>T	c.(3943-3945)gtC>gtT	p.V1315V	LAMA4_ENST00000522006.1_Silent_p.V1308V|LAMA4_ENST00000389463.4_Silent_p.V1308V|LAMA4_ENST00000424408.2_Silent_p.V1308V	NM_001105206.2	NP_001098676.2	Q16363	LAMA4_HUMAN	laminin, alpha 4	1315	Laminin G-like 3.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			NS(1)|breast(6)|central_nervous_system(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(18)|lung(42)|ovary(4)|pancreas(1)|prostate(3)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(8)	100		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		CAGAGCTAATGACGAAGTGGG	0.408000													5	21					0	0	1	0	0
BIRC3	330	broad.mit.edu	37	11	102195247	102195247	+	Missense_Mutation	SNP	A	A	G			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr11:102195247A>G	ENST00000263464.3	+	2	2757	c.7A>G	c.(7-9)Ata>Gta	p.I3V	BIRC3_ENST00000532808.1_Missense_Mutation_p.I3V	NM_001165.4	NP_001156.1	Q13489	BIRC3_HUMAN	baculoviral IAP repeat containing 3	3					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			endometrium(3)|kidney(2)|large_intestine(7)|lung(5)|ovary(3)|skin(1)	21	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		CATTATGAACATAGTAGAAAA	0.373000			T	MALT1	MALT								9	20					0	0	1	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60241050	60241050	+	Translation_Start_Site	SNP	G	G	A			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr5:60241050G>A	ENST00000296597.5	+	0	95				NDUFAF2_ENST00000511107.1_De_novo_Start_OutOfFrame	NM_174889.4	NP_777549.1	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) complex I, assembly factor 2							membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity			central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(1)|ovary(1)	6		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				TGCGGGTCCCGCTGCTGGCAG	0.632000													3	5					0	0	1	0	0
TSGA10	80705	broad.mit.edu	37	2	99695278	99695278	+	Splice_Site	SNP	T	T	A			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr2:99695278T>A	ENST00000393483.3	-	12	1572		c.e12-2		TSGA10_ENST00000539964.1_Splice_Site|TSGA10_ENST00000542655.1_Splice_Site|TSGA10_ENST00000355053.4_Splice_Site|TSGA10_ENST00000478090.1_Intron|TSGA10_ENST00000410001.1_Splice_Site	NM_025244.2	NP_079520.1	Q9BZW7	TSG10_HUMAN	testis specific, 10						spermatogenesis	cytoplasm|nuclear membrane				NS(2)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(2)|large_intestine(8)|lung(10)|ovary(1)|prostate(2)|upper_aerodigestive_tract(1)	34						TAAAGTTATCTATGTATGCAA	0.323000													6	29					0	0	1	0	0
EML2	24139	broad.mit.edu	37	19	46120071	46120071	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr19:46120071T>C	ENST00000536630.1	-	17	1942	c.1804A>G	c.(1804-1806)Atc>Gtc	p.I602V	EML2_ENST00000589876.1_Missense_Mutation_p.I455V|EML2_ENST00000245925.3_Missense_Mutation_p.I455V|EML2_ENST00000587152.1_Missense_Mutation_p.I656V	NM_001193269.1	NP_001180198.1	O95834	EMAL2_HUMAN	echinoderm microtubule associated protein like 2	455					sensory perception of sound|visual perception	cytoplasm|intracellular membrane-bounded organelle|microtubule|microtubule associated complex	catalytic activity|protein binding			NS(1)|breast(2)|cervix(1)|endometrium(1)|kidney(3)|large_intestine(8)|lung(13)|ovary(1)|urinary_tract(1)	31		Ovarian(192;0.179)|all_neural(266;0.224)		OV - Ovarian serous cystadenocarcinoma(262;0.00553)|GBM - Glioblastoma multiforme(486;0.131)|Epithelial(262;0.197)		TCTGTGTGGATAGCCACCAGG	0.632000													3	17					0	0	1	0	0
IGHG4	0	broad.mit.edu	37	14	106091309	106091309	+	RNA	SNP	G	G	A			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr14:106091309G>A	ENST00000390543.2	-	0	584																											ACTCCTTGCCGTTCAGCCAGT	0.592000													5	198					0	0	1	0	0
DPY19L2P2	0	broad.mit.edu	37	7	102912314	102912314	+	RNA	SNP	T	T	C			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr7:102912314T>C	ENST00000312132.4	-	0	2265																											AATAATAAAGTCCCTTTTTTA	0.269000													5	27					0	0	1	0	0
MRPS2	51116	broad.mit.edu	37	9	138393756	138393756	+	Missense_Mutation	SNP	T	T	G	rs148092515		TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr9:138393756T>G	ENST00000371785.1	+	4	445	c.236T>G	c.(235-237)tTt>tGt	p.F79C	MRPS2_ENST00000241600.5_Missense_Mutation_p.F79C|MRPS2_ENST00000488610.1_3'UTR			Q9Y399	RT02_HUMAN	mitochondrial ribosomal protein S2	79					translation	mitochondrion|small ribosomal subunit	structural constituent of ribosome			large_intestine(2)|lung(1)|prostate(2)|urinary_tract(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.46e-53)|Epithelial(140;2.04e-47)|all cancers(34;1.23e-42)		AAGGAACTGTTTTCCGTGAGA	0.567000													12	69					0	0	1	0	0
ANPEP	290	broad.mit.edu	37	15	90335438	90335438	+	Silent	SNP	C	C	T			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr15:90335438C>T	ENST00000300060.6	-	18	2794	c.2481G>A	c.(2479-2481)aaG>aaA	p.K827K		NM_001150.2	NP_001141.2	P15144	AMPN_HUMAN	alanyl (membrane) aminopeptidase	827	Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(10)|liver(1)|lung(20)|ovary(3)|prostate(1)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(3)	57	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CTGCCCGGAGCTTGTCAGCCT	0.627000													14	52					0	0	1	0	0
IFITM3	10410	broad.mit.edu	37	11	320606	320606	+	Missense_Mutation	SNP	G	G	T	rs149004156	by1000genomes	TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr11:320606G>T	ENST00000399808.4	-	1	444	c.208C>A	c.(208-210)Ccc>Acc	p.P70T	RP11-326C3.11_ENST00000602429.1_RNA|IFITM3_ENST00000526811.1_Missense_Mutation_p.P49T|IFITM3_ENST00000602735.1_Missense_Mutation_p.P49T|RP11-326C3.11_ENST00000602756.1_RNA	NM_021034.2	NP_066362.2	Q01628	IFM3_HUMAN	interferon induced transmembrane protein 3	70	Interaction with SPP1.				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane		p.P70T(3)		central_nervous_system(7)|endometrium(7)|kidney(2)|large_intestine(1)|lung(1)	18		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		AGGCAGCAGGGGTTCATGAAG	0.632000													7	52					3.86212e-05	3.9953e-05	1	1	0
ZNF569	148266	broad.mit.edu	37	19	37904427	37904427	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr19:37904427C>T	ENST00000316950.6	-	6	1690	c.1133G>A	c.(1132-1134)gGt>gAt	p.G378D	ZNF569_ENST00000392149.2_Missense_Mutation_p.G378D|ZNF569_ENST00000392150.2_Missense_Mutation_p.G219D	NM_152484.2	NP_689697.2	Q5MCW4	ZN569_HUMAN	zinc finger protein 569	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(5)|endometrium(4)|large_intestine(16)|lung(11)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	40			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GGGTTTTTCACCTGTATGAAT	0.368000													25	61					0	0	1	0	0
HLA-A	3105	broad.mit.edu	37	6	29910607	29910607	+	Silent	SNP	G	G	C	rs72555397		TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr6:29910607G>C	ENST00000396634.1	+	4	488	c.147G>C	c.(145-147)gtG>gtC	p.V49V	HLA-A_ENST00000376809.5_Silent_p.V49V|HLA-A_ENST00000376806.5_Silent_p.V49V|HLA-A_ENST00000376802.2_Silent_p.V49V			P30443	1A01_HUMAN	major histocompatibility complex, class I, A	49	Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity	p.V49V(2)		central_nervous_system(2)|cervix(1)|endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(3)|lung(10)|ovary(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(5)|urinary_tract(2)	30						TCATCGCCGTGGGCTACGTGG	0.692000									Osteosarcoma, Familial Clustering of;Naso-/Oropharyngeal/Laryngeal Cancer, Familial Clustering of;Melanoma, Familial Clustering of;Lichen Sclerosis et Atrophicus, Familial Clustering of	Multiple Myeloma(9;0.094)			4	16					0	0	1	0	0
RP11-417J8.6	0	broad.mit.edu	37	1	142713774	142713774	+	RNA	SNP	A	A	G			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr1:142713774A>G	ENST00000369381.2	-	0	831																											CTTTTTCCACATTGTCATTTT	0.284000													4	64					0	0	1	0	0
NOTCH2	4853	broad.mit.edu	37	1	120612003	120612004	+	Frame_Shift_Del	DEL	GG	GG	-			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr1:120612003_120612004delGG	ENST00000256646.2	-	1	236_237	c.17_18delCC	c.(16-18)cfs	p.P6fs		NM_024408.3	NP_077719.2	Q04721	NOTC2_HUMAN	notch 2	6					anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity	p.P6fs*27(2)		breast(4)|central_nervous_system(6)|cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(9)|kidney(9)|large_intestine(19)|liver(1)|lung(57)|ovary(4)|pancreas(1)|prostate(7)|skin(24)|stomach(2)|upper_aerodigestive_tract(5)|urinary_tract(1)	158	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACAGCAGAGCGGGGCGCAGGGC	0.762			"""N, F, Mis"""		"""marginal zone lymphoma, DLBCL"""				Alagille Syndrome				6	10	---	---	---	---					
GGT6	124975	broad.mit.edu	37	17	4461978	4461978	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WB-A81S-01A-11D-A35I-08	TCGA-WB-A81S-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	d64bff8a-a1fc-43a6-b127-c48ce4b97fb3	7f750dc8-a5e7-4ed1-8248-d66f3a6c7629	g.chr17:4461978delC	ENST00000301395.3	-	3	777	c.718delG	c.(718-720)atfs	p.D240fs	GGT6_ENST00000381550.3_Frame_Shift_Del_p.D278fs|GGT6_ENST00000574154.1_Frame_Shift_Del_p.D272fs|GGT6_ENST00000573591.1_Frame_Shift_Del_p.D124fs	NM_153338.2	NP_699169.2	Q6P531	GGT6_HUMAN	gamma-glutamyltransferase 6	272					glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity			endometrium(2)|large_intestine(1)|lung(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	8						AGTAGAGCATCCCCAGCAAGG	0.667													2	4	---	---	---	---					
