Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LHFPL3	375612	broad.mit.edu	37	7	103969248	103969248	+	Silent	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr7:103969248T>C	ENST00000535008.1	+	1	145	c.21T>C	c.(19-21)gcT>gcC	p.A7A	LHFPL3_ENST00000401970.2_5'UTR|LHFPL3_ENST00000543266.1_Silent_p.A7A|LHFPL3_ENST00000424859.1_5'UTR			Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	0						integral to membrane				kidney(1)|large_intestine(2)|lung(6)	9						ccgccgccgctgccgccgccg	0.721000													3	19					0	0	1	0	0
TAB3	257397	broad.mit.edu	37	X	30873680	30873680	+	Splice_Site	SNP	C	C	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chrX:30873680C>A	ENST00000378933.1	-	3	280		c.e3-1		TAB3_ENST00000378932.2_Splice_Site|TAB3_ENST00000288422.2_Splice_Site|TAB3_ENST00000378930.3_Splice_Site	NM_152787.3	NP_690000.2	Q8N5C8	TAB3_HUMAN	TGF-beta activated kinase 1/MAP3K7 binding protein 3						activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein binding|zinc ion binding			NS(1)|breast(1)|endometrium(8)|kidney(1)|large_intestine(6)|lung(6)|ovary(2)|pancreas(1)|skin(1)	27						TGTTGTTATTCTAGGGGAGAA	0.383000													3	32					1	1	1	1	0
FRG1B	0	broad.mit.edu	37	20	29628246	29628246	+	Missense_Mutation	SNP	C	C	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr20:29628246C>A	ENST00000278882.3	+	6	628	c.248C>A	c.(247-249)gCc>gAc	p.A83D	FRG1B_ENST00000439954.2_Missense_Mutation_p.A88D|FRG1B_ENST00000358464.4_Missense_Mutation_p.A83D																endometrium(10)|kidney(21)|lung(3)|pancreas(1)|prostate(9)|urinary_tract(9)	53						GCTTTGTTGGCCTCAAATAGC	0.353000													5	95					8.12818e-05	9.11943e-05	1	1	0
GALNTL6	442117	broad.mit.edu	37	4	173942682	173942682	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr4:173942682G>A	ENST00000506823.1	+	12	2201	c.1544G>A	c.(1543-1545)cGg>cAg	p.R515Q	GALNTL6_ENST00000508122.1_Missense_Mutation_p.R498Q	NM_001034845.2	NP_001030017.2	Q49A17	GLTL6_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 6	515	Ricin B-type lectin.					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding	p.?(1)		breast(2)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(9)|liver(2)|lung(21)|ovary(1)|pancreas(1)|prostate(1)|skin(2)	45						CTGCATACCCGGAAATTCTGC	0.483000													15	63					0	0	1	0	0
PER3	8863	broad.mit.edu	37	1	7886649	7886649	+	Silent	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:7886649G>A	ENST00000377532.3	+	16	2291	c.2067G>A	c.(2065-2067)gcG>gcA	p.A689A	RP3-467L1.4_ENST00000451646.1_RNA|PER3_ENST00000361923.2_Silent_p.A681A			P56645	PER3_HUMAN	period circadian clock 3	681	CSNK1E binding domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			breast(4)|central_nervous_system(3)|cervix(2)|endometrium(2)|kidney(2)|large_intestine(9)|lung(8)|ovary(1)|pancreas(1)|prostate(2)|skin(3)|upper_aerodigestive_tract(2)	39	Ovarian(185;0.0634)|all_lung(157;0.178)	all_epithelial(116;9.35e-21)|all_lung(118;7.57e-07)|Lung NSC(185;4.52e-06)|Renal(390;0.000147)|Breast(487;0.00086)|Colorectal(325;0.000959)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0234)|all cancers(8;8.58e-70)|GBM - Glioblastoma multiforme(8;1.81e-35)|Colorectal(212;2.06e-07)|COAD - Colon adenocarcinoma(227;1.92e-05)|Kidney(185;7.18e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000472)|STAD - Stomach adenocarcinoma(132;0.00118)|KIRC - Kidney renal clear cell carcinoma(229;0.00122)|READ - Rectum adenocarcinoma(331;0.0649)		TTCTGTCAGCGCACACCCAGA	0.507000													3	39					0	0	1	0	0
GPATCH8	23131	broad.mit.edu	37	17	42501775	42501775	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:42501775T>C	ENST00000434000.1	-	7	482	c.200A>G	c.(199-201)tAt>tGt	p.Y67C	GPATCH8_ENST00000586265.1_5'UTR|GPATCH8_ENST00000591680.1_Missense_Mutation_p.Y145C			Q9UKJ3	GPTC8_HUMAN	G patch domain containing 8	145	G-patch.					intracellular	nucleic acid binding|zinc ion binding			breast(4)|endometrium(7)|kidney(6)|large_intestine(4)|liver(2)|lung(21)|ovary(3)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	50		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.206)		ATGTTTCTGATATTGCTTATC	0.393000													7	70					0	0	1	0	0
PRAMEF13	400736	broad.mit.edu	37	1	13448307	13448307	+	Missense_Mutation	SNP	A	A	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:13448307A>G	ENST00000376132.3	-	4	1270	c.1168T>C	c.(1168-1170)Tct>Cct	p.S390P		NM_001024661.1	NP_001019832.1	Q5VWM6	PRA13_HUMAN	PRAME family member 13	390										breast(1)|large_intestine(1)|lung(3)|skin(2)	7	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;9.86e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|COAD - Colon adenocarcinoma(227;0.000502)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GCACCCATAGACATACAATTT	0.557000													13	103					0	0	1	0	0
EPAS1	2034	broad.mit.edu	37	2	46607400	46607400	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr2:46607400C>T	ENST00000263734.3	+	12	2099	c.1589C>T	c.(1588-1590)gCa>gTa	p.A530V		NM_001430.4	NP_001421.2	Q99814	EPAS1_HUMAN	endothelial PAS domain protein 1	530	NTAD.				angiogenesis|myoblast cell fate commitment|positive regulation of transcription from RNA polymerase II promoter|response to hypoxia	transcription factor complex	histone acetyltransferase binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity|signal transducer activity|transcription coactivator activity|transcription factor binding			NS(1)|breast(2)|central_nervous_system(1)|cervix(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(7)|liver(2)|lung(11)|ovary(2)|prostate(1)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	39		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.18)	LUSC - Lung squamous cell carcinoma(58;0.151)			GAGACACTGGCACCCTATATC	0.592000													45	42					0	0	1	0	0
C20orf96	140680	broad.mit.edu	37	20	257758	257758	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr20:257758C>T	ENST00000360321.2	-	8	890	c.752G>A	c.(751-753)cGc>cAc	p.R251H	C20orf96_ENST00000400269.3_Missense_Mutation_p.R193H|C20orf96_ENST00000382369.5_Missense_Mutation_p.R216H	NM_080571.1|NM_153269.2	NP_542138.1|NP_695001.2	Q9NUD7	CT096_HUMAN	chromosome 20 open reading frame 96	251										endometrium(3)|large_intestine(2)|lung(4)|prostate(1)|skin(1)|urinary_tract(1)	12		all_cancers(10;0.00959)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GACCTTTCTGCGCATCTCACC	0.557000													4	234					0	0	1	0	0
FBXW12	285231	broad.mit.edu	37	3	48419816	48419816	+	Missense_Mutation	SNP	A	A	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr3:48419816A>G	ENST00000296438.5	+	6	601	c.415A>G	c.(415-417)Atc>Gtc	p.I139V	FBXW12_ENST00000436231.1_Intron|FBXW12_ENST00000415155.1_Intron|FBXW12_ENST00000445170.1_Missense_Mutation_p.I120V	NM_207102.2	NP_996985.2	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12	139										breast(1)|central_nervous_system(1)|endometrium(1)|large_intestine(3)|lung(5)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(1)	16				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGGTACCATGATCTGGTCAAG	0.458000													4	37					0	0	1	0	0
PARN	5073	broad.mit.edu	37	16	14676088	14676088	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr16:14676088T>C	ENST00000437198.2	-	17	1283	c.1142A>G	c.(1141-1143)tAc>tGc	p.Y381C	PARN_ENST00000420015.2_Missense_Mutation_p.Y335C|PARN_ENST00000539279.1_Missense_Mutation_p.Y206C|PARN_ENST00000341484.7_Missense_Mutation_p.Y320C	NM_001134477.2|NM_002582.3	NP_001127949.1|NP_002573.1	O95453	PARN_HUMAN	poly(A)-specific ribonuclease	381					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			cervix(2)|endometrium(2)|kidney(3)|large_intestine(2)|lung(9)|ovary(2)|urinary_tract(1)	21						GTAGGCATCGTAGCCTGCCTC	0.448000													12	166					0	0	1	0	0
CYTH2	9266	broad.mit.edu	37	19	48976617	48976617	+	Missense_Mutation	SNP	A	A	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr19:48976617A>G	ENST00000427476.1	+	5	716	c.416A>G	c.(415-417)aAt>aGt	p.N139S	CYTH2_ENST00000452733.2_Missense_Mutation_p.N139S	NM_004228.6|NM_017457.5	NP_004219.3|NP_059431.1	Q99418	CYH2_HUMAN	cytohesin 2	139	SEC7.				actin cytoskeleton organization|endocytosis|regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|membrane fraction|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			endometrium(1)|kidney(2)|large_intestine(1)|lung(6)|ovary(2)|prostate(1)|skin(1)|upper_aerodigestive_tract(1)	15						ACCGACCTCAATCTGGTGCAG	0.517000													4	56					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45128792	45128792	+	RNA	SNP	G	G	T	rs143713325	by1000genomes	TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:45128792G>T	ENST00000575173.1	-	0	418																											AATTCAGGTTGTCAGAATGCA	0.373000													5	60					0.014758	0.0154288	1	1	0
S1PR1	1901	broad.mit.edu	37	1	101705533	101705533	+	Silent	SNP	C	C	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:101705533C>T	ENST00000305352.6	+	2	1368	c.993C>T	c.(991-993)tgC>tgT	p.C331C		NM_001400.4	NP_001391.2	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	331					cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity	p.C331C(1)		NS(1)|autonomic_ganglia(1)|breast(1)|large_intestine(7)|lung(23)|ovary(2)|skin(3)|upper_aerodigestive_tract(1)|urinary_tract(4)	43						GCTGCAAGTGCCCGAGCGGAG	0.562000													5	162					0	0	1	0	0
MYH9	4627	broad.mit.edu	37	22	36690155	36690155	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr22:36690155T>C	ENST00000216181.5	-	28	4050	c.3820A>G	c.(3820-3822)Aag>Gag	p.K1274E		NM_002473.4	NP_002464.1	P35579	MYH9_HUMAN	myosin, heavy chain 9, non-muscle	1274					actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			NS(1)|breast(8)|central_nervous_system(3)|cervix(2)|endometrium(5)|kidney(4)|large_intestine(16)|lung(29)|ovary(4)|pancreas(1)|prostate(3)|skin(1)|upper_aerodigestive_tract(6)|urinary_tract(3)	86						TTGGTGACCTTGTCGGCCAGC	0.657000			T	ALK	ALCL		"""Deafness, autosomal dominant 17, Epstein syndrome, Fechtner syndrome, May-Hegglin anomaly, Sebastian syndrome"""		Hereditary Macrothrombocytopenia, MYH9-associated				17	29					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13721122	13721122	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr5:13721122T>C	ENST00000265104.4	-	71	12370	c.12266A>G	c.(12265-12267)cAg>cGg	p.Q4089R		NM_001369.2	NP_001360.1	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4089	AAA 6 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			NS(6)|breast(14)|central_nervous_system(4)|cervix(2)|endometrium(23)|haematopoietic_and_lymphoid_tissue(8)|kidney(11)|large_intestine(85)|liver(1)|lung(129)|ovary(16)|pancreas(2)|prostate(5)|skin(48)|stomach(5)|upper_aerodigestive_tract(11)|urinary_tract(8)	378	Lung NSC(4;0.00476)					CGCCATGGTCTGCTGCAAGAG	0.428000									Kartagener syndrome				5	69					0	0	1	0	0
DFNA5	1687	broad.mit.edu	37	7	24784270	24784270	+	Silent	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr7:24784270G>A	ENST00000342947.3	-	3	740	c.315C>T	c.(313-315)ggC>ggT	p.G105G	DFNA5_ENST00000419307.1_5'UTR|DFNA5_ENST00000409970.1_5'UTR|DFNA5_ENST00000545231.1_5'UTR|DFNA5_ENST00000409775.3_Silent_p.G105G	NM_004403.2	NP_004394.1	O60443	DFNA5_HUMAN	deafness, autosomal dominant 5	105					sensory perception of sound					endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(4)|lung(6)|ovary(1)|prostate(3)|stomach(1)	19						CGCGGCTGCTGCCCCCCAGGT	0.557000													5	71					0	0	1	0	0
GBA3	57733	broad.mit.edu	37	4	22729264	22729264	+	RNA	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr4:22729264G>A	ENST00000503442.1	+	0	149				GBA3_ENST00000511446.1_RNA|GBA3_ENST00000508166.1_RNA	NM_001128432.2	NP_001121904.1	Q9H227	GBA3_HUMAN	glucosidase, beta, acid 3 (gene/pseudogene)						glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity			breast(1)|kidney(2)|large_intestine(4)|lung(20)|prostate(3)|skin(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	33						TTTGGACAGTGGTGAGTTATC	0.403000													6	185					0	0	1	0	0
CEP192	55125	broad.mit.edu	37	18	13116474	13116474	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr18:13116474T>C	ENST00000506447.1	+	43	7468	c.7388T>C	c.(7387-7389)cTg>cCg	p.L2463P	CEP192_ENST00000540847.2_3'UTR|CEP192_ENST00000430049.2_Missense_Mutation_p.L1988P|CEP192_ENST00000325971.8_Missense_Mutation_p.L1867P	NM_032142.3	NP_115518.3	B7ZMF0	B7ZMF0_HUMAN	centrosomal protein 192kDa	2058										NS(1)|breast(4)|cervix(1)|endometrium(5)|kidney(2)|large_intestine(12)|lung(36)|ovary(4)|pancreas(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	71						AAAGTCAATCTGCGAAATAAT	0.413000													8	44					0	0	1	0	0
SLC10A5	347051	broad.mit.edu	37	8	82606174	82606174	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr8:82606174G>A	ENST00000518568.1	-	1	2235	c.1034C>T	c.(1033-1035)gCt>gTt	p.A345V		NM_001010893.2	NP_001010893.1	Q5PT55	NTCP5_HUMAN	solute carrier family 10, member 5	345						integral to membrane	bile acid:sodium symporter activity			autonomic_ganglia(1)|endometrium(3)|kidney(1)|large_intestine(5)|lung(5)	15						CAAACCCAAAGCAGGAACTAA	0.368000													3	43					0	0	1	0	0
XCL2	6846	broad.mit.edu	37	1	168510202	168510202	+	Silent	SNP	G	G	A	rs149372418	byFrequency	TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:168510202G>A	ENST00000367819.2	-	3	365	c.333C>T	c.(331-333)acC>acT	p.T111T		NM_003175.3	NP_003166.1	Q9UBD3	XCL2_HUMAN	chemokine (C motif) ligand 2	111					blood circulation|chemotaxis|immune response|signal transduction	extracellular space	chemokine activity	p.T111T(1)		large_intestine(1)|lung(6)|ovary(1)	8	all_hematologic(923;0.215)					AGCCAGTCAGGGTCACAGCTG	0.498000													3	27					0	0	1	0	0
AC004702.2	0	broad.mit.edu	37	17	20224859	20224859	+	RNA	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:20224859G>A	ENST00000580225.1	+	0	105				CCDC144CP_ENST00000340196.4_RNA																							CACGATGTCCGCCTGGAAGAT	0.642000													57	152					0	0	1	0	0
ADAM21P1	0	broad.mit.edu	37	14	70714259	70714259	+	RNA	SNP	A	A	G	rs7144638	by1000genomes	TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr14:70714259A>G	ENST00000530196.1	-	0	259					NR_003951.1																						CACCACTTCCAGGGAAGTGAA	0.527000													4	57					0	0	1	0	0
ALOX12	239	broad.mit.edu	37	17	6902684	6902684	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:6902684G>A	ENST00000251535.6	+	6	759	c.706G>A	c.(706-708)Gcc>Acc	p.A236T	RP11-589P10.7_ENST00000572547.1_RNA|AC027763.2_ENST00000399541.2_Intron|AC027763.2_ENST00000574377.1_3'UTR	NM_000697.2	NP_000688.2	P18054	LOX12_HUMAN	arachidonate 12-lipoxygenase	236	Lipoxygenase.				anti-apoptosis|cellular component movement|fatty acid oxidation|leukotriene biosynthetic process|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of cell proliferation|superoxide anion generation	cytosol|sarcolemma	arachidonate 12-lipoxygenase activity|hepoxilin-epoxide hydrolase activity|iron ion binding|lipoxygenase activity|protein binding			breast(2)|central_nervous_system(1)|endometrium(3)|large_intestine(4)|lung(4)|ovary(1)|prostate(3)|urinary_tract(1)	19						CCTCAATGGTGCCAACCCCAT	0.547000													4	56					0	0	1	0	0
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	C	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:203821508C>G	ENST00000545588.1	+	17	6241	c.2414C>G	c.(2413-2415)tCa>tGa	p.S805*	ZC3H11A_ENST00000367212.3_Nonsense_Mutation_p.S805*|ZC3H11A_ENST00000332127.4_Nonsense_Mutation_p.S805*|ZC3H11A_ENST00000367214.1_Nonsense_Mutation_p.S805*|ZC3H11A_ENST00000367210.1_Nonsense_Mutation_p.S805*	NM_001271675.1	NP_001258604.1	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	805							nucleic acid binding|protein binding|zinc ion binding	p.S805*(3)		central_nervous_system(1)|endometrium(7)|kidney(1)|large_intestine(4)|lung(15)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)	32	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			CTTGAGCTATCAGAAATGATT	0.378000													3	42					0	0	1	0	0
GNE	10020	broad.mit.edu	37	9	36249220	36249220	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr9:36249220C>T	ENST00000396594.3	-	2	337	c.226G>A	c.(226-228)Gta>Ata	p.V76I	GNE_ENST00000447283.2_Missense_Mutation_p.V45I|GNE_ENST00000377902.5_Missense_Mutation_p.V45I|GNE_ENST00000539208.1_Intron|GNE_ENST00000543356.2_Intron|GNE_ENST00000539815.1_Missense_Mutation_p.V45I	NM_001128227.2	NP_001121699.1	Q9Y223	GLCNE_HUMAN	glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase	45					cell adhesion|lipopolysaccharide biosynthetic process|N-acetylneuraminate metabolic process|UDP-N-acetylglucosamine metabolic process		ATP binding|N-acylmannosamine kinase activity|UDP-N-acetylglucosamine 2-epimerase activity			endometrium(8)|kidney(1)|large_intestine(3)|lung(5)|upper_aerodigestive_tract(1)|urinary_tract(1)	19			STAD - Stomach adenocarcinoma(86;0.228)			GAGCCAAGTACCACAACATCA	0.413000													7	77					0	0	1	0	0
AZIN1	0	broad.mit.edu	37	8	103855864	103855864	+	Missense_Mutation	SNP	T	T	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr8:103855864T>G	ENST00000337198.5	-	3	1180	c.17A>C	c.(16-18)gAt>gCt	p.D6A	AZIN1_ENST00000347770.4_Missense_Mutation_p.D6A|AZIN1_ENST00000522311.1_5'UTR	NM_148174.2	NP_680479.1	O14977	AZIN1_HUMAN	antizyme inhibitor 1	6					polyamine biosynthetic process|regulation of cellular amino acid metabolic process	cytosol	catalytic activity|protein binding			breast(1)|endometrium(1)|kidney(1)|large_intestine(2)|lung(1)|prostate(1)|skin(1)|stomach(1)	9	Lung NSC(17;0.000143)|all_lung(17;0.000294)		OV - Ovarian serous cystadenocarcinoma(57;0.000196)|STAD - Stomach adenocarcinoma(118;0.0414)			GTTTGCATCATCAATAAATCC	0.423000													11	50					0	0	1	0	0
PIGS	94005	broad.mit.edu	37	17	26882066	26882066	+	Missense_Mutation	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:26882066T>C	ENST00000308360.7	-	11	1570	c.1195A>G	c.(1195-1197)Att>Gtt	p.I399V	PIGS_ENST00000543734.1_Missense_Mutation_p.I338V|PIGS_ENST00000395346.2_Missense_Mutation_p.I391V	NM_033198.3	NP_149975.1	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis, class S	399					attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(3)|endometrium(1)|kidney(1)|large_intestine(2)|lung(7)|upper_aerodigestive_tract(1)|urinary_tract(1)	16	Lung NSC(42;0.00431)					GGCTGAGCAATCCCAAAGAGC	0.542000													5	9					0	0	1	0	0
LSM14B	149986	broad.mit.edu	37	20	60701439	60701439	+	Missense_Mutation	SNP	G	G	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr20:60701439G>T	ENST00000253001.4	+	3	577	c.371G>T	c.(370-372)gGc>gTc	p.G124V	LSM14B_ENST00000370915.1_Missense_Mutation_p.G124V|LSM14B_ENST00000279068.6_Missense_Mutation_p.G124V			Q9BX40	LS14B_HUMAN	LSM14B, SCD6 homolog B (S. cerevisiae)	124					multicellular organismal development|regulation of translation	ribonucleoprotein complex				endometrium(3)|kidney(1)|lung(4)	8	Breast(26;3.97e-09)		BRCA - Breast invasive adenocarcinoma(19;1.28e-07)			GCGCCCTACGGCCCGCTGGCG	0.627000													8	33					0.00307968	0.00337298	1	1	0
PCLO	27445	broad.mit.edu	37	7	82389988	82389988	+	Silent	SNP	T	T	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr7:82389988T>C	ENST00000333891.8	-	24	15592	c.15255A>G	c.(15253-15255)cgA>cgG	p.R5085R		NM_033026.5	NP_149015.2	Q9Y6V0	PCLO_HUMAN	piccolo presynaptic cytomatrix protein	5008					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			breast(3)|central_nervous_system(3)|cervix(5)|endometrium(19)|haematopoietic_and_lymphoid_tissue(3)|kidney(19)|large_intestine(35)|lung(145)|ovary(7)|prostate(4)|upper_aerodigestive_tract(14)|urinary_tract(2)	259						TTAGACTGAATCGAAAAGTTT	0.318000													30	32					0	0	1	0	0
RP11-156P1.3	0	broad.mit.edu	37	17	45128812	45128812	+	RNA	SNP	C	C	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:45128812C>T	ENST00000575173.1	-	0	418																											AGTCCTGTTTCTGTGTGGATT	0.373000													3	44					0	0	1	0	0
CNTN3	5067	broad.mit.edu	37	3	74383970	74383970	+	Silent	SNP	C	C	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr3:74383970C>A	ENST00000263665.6	-	12	1611	c.1584G>T	c.(1582-1584)ctG>ctT	p.L528L		NM_020872.1	NP_065923.1	Q9P232	CNTN3_HUMAN	contactin 3 (plasmacytoma associated)	528	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			NS(2)|breast(4)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(3)|large_intestine(14)|lung(39)|ovary(1)|prostate(1)|skin(4)|stomach(1)|upper_aerodigestive_tract(4)|urinary_tract(1)	83		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TGATGTCTAACAGCGGGTCAT	0.438000													5	65					5.9392e-07	6.83008e-07	1	1	0
IGHV3-66	0	broad.mit.edu	37	14	107131441	107131441	+	RNA	SNP	A	A	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr14:107131441A>G	ENST00000390632.2	-	0	119																											ATCACCTTTTAAAATAGCAAC	0.453000													4	149					0	0	1	0	0
MAATS1	89876	broad.mit.edu	37	3	119451227	119451227	+	Missense_Mutation	SNP	T	T	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr3:119451227T>G	ENST00000273390.5	+	9	1182	c.1105T>G	c.(1105-1107)Tca>Gca	p.S369A		NM_033364.3	NP_203528.2			MYCBP-associated, testis expressed 1																		TGATTATGCATCACAGGTCTA	0.368000													18	61					0	0	1	0	0
TAF4	6874	broad.mit.edu	37	20	60581703	60581703	+	Missense_Mutation	SNP	C	C	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr20:60581703C>T	ENST00000252996.3	-	7	2085	c.2086G>A	c.(2086-2088)Gtg>Atg	p.V696M	TAF4_ENST00000488539.1_5'UTR	NM_003185.3	NP_003176.2	O00268	TAF4_HUMAN	TAF4 RNA polymerase II, TATA box binding protein (TBP)-associated factor, 135kDa	696					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			central_nervous_system(1)|cervix(1)|endometrium(4)|kidney(1)|large_intestine(5)|lung(15)|ovary(2)|pancreas(1)|prostate(2)|skin(4)|upper_aerodigestive_tract(1)	37	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			CTCAGCACCACGGCCGTGAGC	0.716000													4	25					0	0	1	0	0
RAI1	10743	broad.mit.edu	37	17	17699978	17699978	+	Missense_Mutation	SNP	T	T	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:17699978T>G	ENST00000353383.1	+	3	4185	c.3716T>G	c.(3715-3717)cTg>cGg	p.L1239R	RAI1_ENST00000261641.6_Missense_Mutation_p.L1239R	NM_030665.3	NP_109590.3	Q7Z5J4	RAI1_HUMAN	retinoic acid induced 1	1239						cytoplasm|nucleus	zinc ion binding			breast(1)|central_nervous_system(3)|endometrium(4)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(7)|lung(14)|ovary(1)|prostate(1)|skin(5)|urinary_tract(7)	48				READ - Rectum adenocarcinoma(1115;0.0276)		AAGCGGAACCTGGTCTTGCGG	0.642000													6	26					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468448	56468448	+	Missense_Mutation	SNP	C	C	G			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr3:56468448C>G	ENST00000288221.6	-	2	843	c.588G>C	c.(586-588)ttG>ttC	p.L196F		NM_015576.1	NP_056391.1	O15083	ERC2_HUMAN	ELKS/RAB6-interacting/CAST family member 2	196						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			breast(2)|endometrium(5)|large_intestine(6)|liver(1)|lung(14)|ovary(2)|urinary_tract(1)	31				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTTCTTTCCTCAAGACTCTCT	0.458000													21	59					0	0	1	0	0
PID1	55022	broad.mit.edu	37	2	229890554	229890554	+	Missense_Mutation	SNP	C	C	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr2:229890554C>A	ENST00000392054.3	-	4	880	c.541G>T	c.(541-543)Gtc>Ttc	p.V181F	PID1_ENST00000409462.1_Missense_Mutation_p.V101F|PID1_ENST00000392055.3_Missense_Mutation_p.V150F|PID1_ENST00000482518.2_Intron|PID1_ENST00000354069.6_Missense_Mutation_p.V183F	NM_017933.4	NP_060403.3	Q7Z2X4	PCLI1_HUMAN	phosphotyrosine interaction domain containing 1	183	PID.					cytoplasm				breast(4)|endometrium(3)|large_intestine(5)|lung(8)|pancreas(1)|prostate(2)|skin(1)|upper_aerodigestive_tract(2)	26		Renal(207;0.0112)|all_lung(227;0.0191)|Lung NSC(271;0.0851)|all_hematologic(139;0.104)|Acute lymphoblastic leukemia(138;0.171)		Epithelial(121;3.08e-11)|all cancers(144;2.28e-08)|LUSC - Lung squamous cell carcinoma(224;0.0145)|Lung(261;0.0189)		TCCCTGTAGACCCAGGCGAAG	0.602000													4	68					0.00909568	0.00973026	1	1	0
OIT3	170392	broad.mit.edu	37	10	74673076	74673076	+	Silent	SNP	G	G	A			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr10:74673076G>A	ENST00000334011.5	+	6	1019	c.801G>A	c.(799-801)ttG>ttA	p.L267L		NM_152635.1	NP_689848.1	Q8WWZ8	OIT3_HUMAN	oncoprotein induced transcript 3	267	ZP.					nuclear envelope	calcium ion binding			autonomic_ganglia(1)|cervix(1)|endometrium(1)|kidney(2)|large_intestine(9)|liver(2)|lung(14)|ovary(2)|prostate(1)|skin(2)	35	Prostate(51;0.0198)					TCCCTGTGTTGTGCAAATCAA	0.522000													9	173					0	0	1	0	0
PPP1R21	129285	broad.mit.edu	37	2	48701954	48701954	+	Missense_Mutation	SNP	G	G	C			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr2:48701954G>C	ENST00000294952.8	+	12	1378	c.1221G>C	c.(1219-1221)ttG>ttC	p.L407F	PPP1R21_ENST00000281394.4_Missense_Mutation_p.L407F|PPP1R21_ENST00000449090.2_Missense_Mutation_p.L407F	NM_001135629.2	NP_001129101.1	Q6ZMI0	KLRAQ_HUMAN	protein phosphatase 1, regulatory subunit 21	407										endometrium(2)|kidney(4)|lung(9)	15						TTCTTGCCTTGCCAAGTAAGT	0.443000													3	59					0	0	1	0	0
PADI6	353238	broad.mit.edu	37	1	17720687	17720687	+	RNA	DEL	G	G	-	rs67226027		TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:17720687delG	ENST00000434762.2	+	0	1233							Q6TGC4	PADI6_HUMAN	peptidyl arginine deiminase, type VI						peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm|nucleus	calcium ion binding|protein-arginine deiminase activity			breast(2)|central_nervous_system(1)|endometrium(2)|kidney(4)|large_intestine(9)|lung(9)|ovary(2)	29		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;7.59e-06)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.0134)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGGCCTCTGAGGGGGGAGGGG	0.587													4	4	---	---	---	---					
FMN2	56776	broad.mit.edu	37	1	240256975	240256975	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr1:240256975delG	ENST00000319653.9	+	1	1796	c.1566delG	c.(1564-1566)aafs	p.K522fs		NM_020066.4	NP_064450.3	Q9NZ56	FMN2_HUMAN	formin 2	522					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			NS(1)|breast(7)|central_nervous_system(6)|cervix(1)|endometrium(14)|haematopoietic_and_lymphoid_tissue(1)|kidney(10)|large_intestine(13)|lung(87)|ovary(6)|pancreas(3)|prostate(12)|skin(7)|stomach(2)|upper_aerodigestive_tract(6)|urinary_tract(2)	178	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			TGGCCGCCAAGGCGTCTGGGG	0.731													2	4	---	---	---	---					
AC019118.2	0	broad.mit.edu	37	2	2910722	2910723	+	RNA	INS	-	-	T			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr2:2910722_2910723insT	ENST00000457478.1	-	0	594																											tccaccccctctccccagccca	0.708													4	2	---	---	---	---					
GTF2IRD1P1	0	broad.mit.edu	37	7	66304731	66304731	+	RNA	DEL	T	T	-			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr7:66304731delT	ENST00000457166.1	-	0	189					NR_003934.1																						TTTCTTTCCCttttttttttt	0.512													3	6	---	---	---	---					
RP11-262H14.3	0	broad.mit.edu	37	9	66545695	66545695	+	RNA	DEL	A	A	-			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr9:66545695delA	ENST00000445604.2	-	0	669																											CTGTAAGAGGAAAAAAAAACA	0.373													4	5	---	---	---	---					
ITGA3	3675	broad.mit.edu	37	17	48165686	48165686	+	Frame_Shift_Del	DEL	C	C	-			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr17:48165686delC	ENST00000320031.8	+	25	3473	c.3143delC	c.(3142-3144)acfs	p.T1048fs	ITGA3_ENST00000007722.7_Intron	NM_002204.2|NM_005501.2	NP_002195.1|NP_005492.1	P26006	ITA3_HUMAN	integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor)	1048					blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			endometrium(3)|kidney(2)|large_intestine(7)|lung(11)|ovary(2)|pancreas(1)|prostate(1)|skin(2)|stomach(2)	31						GAGAGGCTGACCGACGACTAC	0.687													2	4	---	---	---	---					
CLEC17A	388512	broad.mit.edu	37	19	14694175	14694176	+	In_Frame_Ins	INS	-	-	GGA	rs34295949		TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chr19:14694175_14694176insGGA	ENST00000547437.1	+	2	127_128	c.50_51insGGA	c.(49-51)aga>aGGAga	p.17_17R>RR	CLEC17A_ENST00000417570.1_In_Frame_Ins_p.17_17R>RR|CLEC17A_ENST00000397439.2_In_Frame_Ins_p.17_17R>RR	NM_207390.3	NP_997273.3	Q6ZS10	CL17A_HUMAN	C-type lectin domain family 17, member A	17						cell surface|integral to membrane	fucose binding|mannose binding|metal ion binding|receptor activity										GAAGGGACCATGGAGGAGGAGG	0.579													7	8	---	---	---	---					
NAP1L2	4674	broad.mit.edu	37	X	72433664	72433666	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-WB-A821-01A-11D-A35I-08	TCGA-WB-A821-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	2afcaca7-8917-4586-b338-88e7a6b2547e	8228ec6a-dd1e-4729-9e22-07800658097b	g.chrX:72433664_72433666delTCC	ENST00000373517.3	-	1	1018_1020	c.663_665delGGA	c.(661-666)gac>ga	p.ED221del	NAP1L2_ENST00000536638.1_In_Frame_Del_p.ED79del	NM_021963.3	NP_068798.1	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	221	Glu-rich (acidic).				nucleosome assembly	chromatin assembly complex				NS(1)|breast(2)|endometrium(2)|kidney(3)|large_intestine(6)|lung(12)|skin(3)	29	Renal(35;0.156)					CTCAATGTCGtcctcctcctcct	0.424													7	38	---	---	---	---					
