Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
KLK13	26085	broad.mit.edu	37	19	51563781	51563781	+	Nonsense_Mutation	SNP	G	G	A			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr19:51563781G>A	ENST00000595793.1	-	2	190	c.148C>T	c.(148-150)Cag>Tag	p.Q50*	KLK13_ENST00000595547.1_Nonsense_Mutation_p.Q50*|KLK13_ENST00000596955.1_Nonsense_Mutation_p.Q50*|KLK13_ENST00000335422.3_Intron	NM_015596.1	NP_056411.1	Q9UKR3	KLK13_HUMAN	kallikrein-related peptidase 13	50	Peptidase S1.				proteolysis		protein binding|serine-type endopeptidase activity			central_nervous_system(1)|endometrium(1)|kidney(2)|large_intestine(4)|lung(6)|prostate(1)|skin(1)	16		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00224)|GBM - Glioblastoma multiforme(134;0.00432)		AGGGCAGCCTGCCAGGGCTGA	0.597000													4	57					0	0	1	0	0
RP11-252A24.2	0	broad.mit.edu	37	16	74372357	74372357	+	RNA	SNP	C	C	T	rs116311018	by1000genomes	TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr16:74372357C>T	ENST00000429810.2	-	0	1839																											ATCTCAAACTCTGTGAAAGAG	0.368000													3	29					0	0	1	0	0
IGHD	0	broad.mit.edu	37	14	106311819	106311819	+	RNA	SNP	T	T	C			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr14:106311819T>C	ENST00000390556.2	-	0	191																											CTGCTTGTCATGTAGTAGCTG	0.577000													13	40					0	0	1	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20868177	20868177	+	Silent	SNP	C	C	T			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr12:20868177C>T	ENST00000381552.1	+	6	1002	c.634C>T	c.(634-636)Ctg>Ttg	p.L212L	SLCO1C1_ENST00000266509.2_Silent_p.L212L|SLCO1C1_ENST00000545102.1_Silent_p.L94L|SLCO1C1_ENST00000540354.1_Intron|SLCO1C1_ENST00000545604.1_Silent_p.L212L			Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family, member 1C1	212					sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			NS(1)|cervix(1)|endometrium(4)|kidney(3)|large_intestine(9)|liver(1)|lung(28)|ovary(5)|pancreas(1)|prostate(2)|skin(3)|stomach(1)|upper_aerodigestive_tract(1)	60	Esophageal squamous(101;0.149)					CATTGCCTACCTGGATGATTT	0.428000													4	76					0	0	1	0	0
PXDN	7837	broad.mit.edu	37	2	1652159	1652159	+	Silent	SNP	G	G	A			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr2:1652159G>A	ENST00000252804.4	-	17	3443	c.3393C>T	c.(3391-3393)ccC>ccT	p.P1131P		NM_012293.1	NP_036425.1	Q92626	PXDN_HUMAN	peroxidasin homolog (Drosophila)	1131					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			breast(1)|cervix(3)|endometrium(10)|haematopoietic_and_lymphoid_tissue(3)|kidney(6)|large_intestine(24)|lung(48)|ovary(3)|pancreas(8)|prostate(2)|upper_aerodigestive_tract(1)|urinary_tract(3)	112	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GCAGCTGCGAGGGCACACGCA	0.627000													14	22					0	0	1	0	0
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	Splice_Site	SNP	G	G	A	rs61350760	by1000genomes	TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr1:145293269G>A	ENST00000369338.1	+	1	155		c.e1+1		NBPF10_ENST00000369339.2_Intron|RP11-458D21.5_ENST00000468030.1_Splice_Site			A6NDV3	A6NDV3_HUMAN	neuroblastoma breakpoint family, member 10											NS(3)|breast(1)|central_nervous_system(3)|endometrium(12)|kidney(23)|lung(15)|ovary(1)|prostate(7)|skin(6)|urinary_tract(2)	73	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TTTCACAACAGTAAGTTAAGA	0.423000													6	44					0	0	1	0	0
GYPE	2996	broad.mit.edu	37	4	144826671	144826671	+	Translation_Start_Site	SNP	C	C	T			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr4:144826671C>T	ENST00000358615.4	-	0	41				GYPE_ENST00000437468.2_De_novo_Start_OutOfFrame	NM_198682.2	NP_941391.2	P15421	GLPE_HUMAN	glycophorin E (MNS blood group)							integral to plasma membrane				endometrium(1)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(2)|lung(1)	5	all_hematologic(180;0.158)					CCTGAGATCACGAGCTGGCTC	0.398000													6	46					0	0	1	0	0
NPIPB5	100132247	broad.mit.edu	37	16	22545865	22545865	+	Missense_Mutation	SNP	G	G	C	rs147500263	by1000genomes	TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr16:22545865G>C	ENST00000424340.1	+	7	1840	c.1561G>C	c.(1561-1563)Gcc>Ccc	p.A521P	NPIPB5_ENST00000517539.1_Missense_Mutation_p.A521P|NPIPB5_ENST00000415654.1_3'UTR	NM_001135865.1	NP_001129337.1			nuclear pore complex interacting protein family, member B5																		TCAGCTCACTGCCCTTCCACC	0.567000													11	240					0	0	1	0	0
UNC79	57578	broad.mit.edu	37	14	94067098	94067098	+	Missense_Mutation	SNP	G	G	A			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr14:94067098G>A	ENST00000553484.1	+	25	3710	c.3556G>A	c.(3556-3558)Gaa>Aaa	p.E1186K	UNC79_ENST00000256339.4_Missense_Mutation_p.E1009K|UNC79_ENST00000555664.1_Missense_Mutation_p.E1186K|UNC79_ENST00000393151.2_Missense_Mutation_p.E1186K			Q9P2D8	UNC79_HUMAN	unc-79 homolog (C. elegans)	1186						integral to membrane				breast(3)|cervix(2)|endometrium(10)|kidney(7)|large_intestine(18)|liver(1)|lung(64)|ovary(1)|prostate(5)|skin(3)|urinary_tract(4)	118						TTGTAACAAGGAATTTCCTTT	0.413000													4	56					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22296294	22296294	+	Splice_Site	SNP	G	G	C			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr11:22296294G>C	ENST00000324559.8	+	20	2731		c.e20+1		ANO5_ENST00000532043.1_Splice_Site	NM_001142649.1|NM_213599.2	NP_001136121.1|NP_998764.1	Q75V66	ANO5_HUMAN	anoctamin 5							chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			breast(2)|central_nervous_system(3)|endometrium(1)|kidney(2)|large_intestine(12)|lung(36)|ovary(1)|pancreas(1)|prostate(1)|skin(2)|upper_aerodigestive_tract(1)|urinary_tract(1)	63						TCACTTGCAGGTGATTTGTTT	0.343000													3	43					0	0	1	0	0
ARHGEF26	26084	broad.mit.edu	37	3	153839931	153839931	+	Frame_Shift_Del	DEL	T	T	-			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr3:153839931delT	ENST00000356448.4	+	2	434	c.150delT	c.(148-150)gafs	p.D50fs	ARHGEF26_ENST00000465817.1_Frame_Shift_Del_p.D50fs|ARHGEF26_ENST00000465093.1_Frame_Shift_Del_p.D50fs	NM_001251962.1	NP_001238891.1	Q96DR7	ARHGQ_HUMAN	Rho guanine nucleotide exchange factor (GEF) 26	50					regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			endometrium(4)|kidney(1)|large_intestine(7)|lung(8)|ovary(1)|pancreas(1)|urinary_tract(1)	23						TAATTACGGATTTCCCGGTGG	0.662													2	4	---	---	---	---					
KCNH3	23416	broad.mit.edu	37	12	49937738	49937740	+	In_Frame_Del	DEL	GGG	GGG	-			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr12:49937738_49937740delGGG	ENST00000257981.6	+	6	1124_1126	c.864_866delGGG	c.(862-867)tcc>tc	p.SG288del		NM_012284.1	NP_036416.1	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H (eag-related), member 3	288					regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity			NS(2)|central_nervous_system(1)|endometrium(3)|haematopoietic_and_lymphoid_tissue(1)|large_intestine(5)|lung(20)|prostate(2)|skin(1)|upper_aerodigestive_tract(1)	36						TGTCCAAGTCGGGCCAGGTGGTG	0.596													11	56	---	---	---	---					
GOLGA6D	653643	broad.mit.edu	37	15	75585440	75585442	+	In_Frame_Del	DEL	GAG	GAG	-			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr15:75585440_75585442delGAG	ENST00000434739.3	+	14	1569_1571	c.1528_1530delGAG	c.(1528-1530)del	p.E513del		NM_001145224.1	NP_001138696.1	P0CG33	GOG6D_HUMAN	golgin A6 family, member D	513										kidney(1)|lung(1)	2						TCTGGACAGTGAGGAGGAGGAGG	0.631													2	4	---	---	---	---					
PYY2	0	broad.mit.edu	37	17	26554700	26554700	+	RNA	DEL	C	C	-			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr17:26554700delC	ENST00000441253.2	+	0	685					NR_003064.2																						GCGAGGACCGCCTCGGCAGGT	0.647													2	4	---	---	---	---					
LIG1	3978	broad.mit.edu	37	19	48639327	48639327	+	Frame_Shift_Del	DEL	G	G	-			TCGA-WB-A822-01A-11D-A35I-08	TCGA-WB-A822-10A-01D-A35G-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	5af00a03-2099-4f52-ac2d-c6b82868f847	866f46fc-d2fe-4bd8-a62f-a46016f1fb9c	g.chr19:48639327delG	ENST00000263274.7	-	15	1806	c.1387delC	c.(1387-1389)tcfs	p.L463fs	LIG1_ENST00000427526.2_Frame_Shift_Del_p.L432fs|LIG1_ENST00000536218.1_Frame_Shift_Del_p.L395fs	NM_000234.1	NP_000225.1	P18858	DNLI1_HUMAN	ligase I, DNA, ATP-dependent	463					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			breast(1)|cervix(1)|endometrium(7)|kidney(1)|large_intestine(9)|lung(22)|prostate(2)|skin(1)	44		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	GCCTGGGAGAGGGCAGCCAGC	0.692								Nucleotide excision repair (NER)					2	4	---	---	---	---					
