Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_alt_allele	validation_method	validation_status	validation_tumor_sample
NOL9	79707	broad.mit.edu	37	1	6592683	6592683	+	Nonsense_Mutation	SNP	T	T	A			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr1:6592683T>A	ENST00000377705.5	-	8	1407	c.1375A>T	c.(1375-1377)Aaa>Taa	p.K459*		NM_024654.4	NP_078930	Q5SY16	NOL9_HUMAN	nucleolar protein 9	459					maturation of 5.8S rRNA	nucleolus	ATP binding|polynucleotide 5'-hydroxyl-kinase activity|RNA binding			central_nervous_system(2)|endometrium(2)|kidney(1)|large_intestine(2)|lung(9)|skin(2)|urinary_tract(1)	19	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;2.46e-35)|all_epithelial(116;1.41e-22)|all_lung(118;7.59e-07)|Lung NSC(185;4.28e-06)|Colorectal(325;4.52e-05)|Breast(487;0.000353)|Renal(390;0.0007)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0443)		Colorectal(212;1.47e-07)|COAD - Colon adenocarcinoma(227;1.47e-05)|Kidney(185;5.27e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|BRCA - Breast invasive adenocarcinoma(365;0.00113)|STAD - Stomach adenocarcinoma(132;0.0017)|READ - Rectum adenocarcinoma(331;0.0649)		GTCTTGCTTTTTGTGTACAAG	0.463													8	119	---	---	---	---
AADACL4	343066	broad.mit.edu	37	1	12721809	12721809	+	Nonsense_Mutation	SNP	C	C	G			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr1:12721809C>G	ENST00000376221.1	+	3	393	c.393C>G	c.(391-393)taC>taG	p.Y131*		NM_001013630.1	NP_001013652.1	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	131						integral to membrane	carboxylesterase activity			breast(1)|haematopoietic_and_lymphoid_tissue(1)|kidney(2)|large_intestine(6)|lung(6)|prostate(1)	17	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		CAGATTGTTACCATGGCCTGT	0.527													11	86	---	---	---	---
C1orf87	127795	broad.mit.edu	37	1	60520927	60520927	+	Missense_Mutation	SNP	G	G	C			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr1:60520927G>C	ENST00000371201.3	-	3	398	c.291C>G	c.(289-291)aaC>aaG	p.N97K	C1orf87_ENST00000450089.2_Missense_Mutation_p.N97K	NM_152377.2	NP_689590.1	Q8N0U7	CA087_HUMAN	chromosome 1 open reading frame 87	97							calcium ion binding			breast(2)|endometrium(2)|large_intestine(6)|lung(19)|ovary(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(1)	33						GTTTCTGGTTGTTTTCTGATT	0.393													50	145	---	---	---	---
POLR1A	25885	broad.mit.edu	37	2	86327179	86327179	+	Missense_Mutation	SNP	G	G	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr2:86327179G>T	ENST00000263857.6	-	2	572	c.194C>A	c.(193-195)tCc>tAc	p.S65Y	POLR1A_ENST00000409681.1_Missense_Mutation_p.S65Y			O95602	RPA1_HUMAN	polymerase (RNA) I polypeptide A, 194kDa	65					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			NS(1)|breast(4)|cervix(2)|endometrium(8)|kidney(3)|large_intestine(12)|liver(1)|lung(20)|ovary(3)|prostate(1)|skin(2)|stomach(1)|upper_aerodigestive_tract(5)	63						CACGCAGGTGGAGCACACCTC	0.557													3	39	---	---	---	---
ERBB4	2066	broad.mit.edu	37	2	212530061	212530061	+	Missense_Mutation	SNP	T	T	C			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr2:212530061T>C	ENST00000342788.4	-	15	2168	c.1858A>G	c.(1858-1860)Aac>Gac	p.N620D	ERBB4_ENST00000436443.1_Missense_Mutation_p.N620D|ERBB4_ENST00000402597.1_Missense_Mutation_p.N620D	NM_005235.2	NP_005226.1	Q15303	ERBB4_HUMAN	v-erb-b2 avian erythroblastic leukemia viral oncogene homolog 4	620	Cys-rich.				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			NS(1)|breast(7)|cervix(1)|endometrium(11)|haematopoietic_and_lymphoid_tissue(2)|kidney(6)|large_intestine(31)|lung(71)|pancreas(1)|prostate(3)|skin(39)|stomach(2)|upper_aerodigestive_tract(3)|urinary_tract(1)	179		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		TGGGTGCAGTTTGGATGGCAT	0.478										TSP Lung(8;0.080)			21	51	---	---	---	---
CIDEC	63924	broad.mit.edu	37	3	9911609	9911609	+	Missense_Mutation	SNP	G	G	A			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr3:9911609G>A	ENST00000336832.2	-	5	650	c.511C>T	c.(511-513)Ctt>Ttt	p.L171F	CIDEC_ENST00000383817.1_Intron|CIDEC_ENST00000423850.1_Missense_Mutation_p.L97F|CIDEC_ENST00000455015.1_Missense_Mutation_p.L97F|CIDEC_ENST00000443115.1_Intron|CIDEC_ENST00000430427.1_Missense_Mutation_p.L181F	NM_001199552.1|NM_001199623.1|NM_022094.3	NP_001186481.1|NP_001186552.1|NP_071377.2	Q96AQ7	CIDEC_HUMAN	cell death-inducing DFFA-like effector c	171					apoptosis|induction of apoptosis	cytosol|focal adhesion|nucleus				breast(2)|central_nervous_system(1)|endometrium(1)|lung(2)|ovary(1)|skin(1)	8	Medulloblastoma(99;0.227)					TCATAGGAAAGGGAGTATGTA	0.512													3	45	---	---	---	---
XIRP1	165904	broad.mit.edu	37	3	39225734	39225734	+	Missense_Mutation	SNP	G	G	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr3:39225734G>T	ENST00000340369.3	-	2	5431	c.5203C>A	c.(5203-5205)Cct>Act	p.P1735T	XIRP1_ENST00000421646.1_Missense_Mutation_p.P418T|XIRP1_ENST00000396251.1_3'UTR	NM_194293.2	NP_919269.2	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1735	Interaction with FLNC.						actin binding			breast(4)|central_nervous_system(2)|endometrium(9)|haematopoietic_and_lymphoid_tissue(3)|kidney(4)|large_intestine(14)|lung(22)|ovary(4)|pancreas(1)|prostate(2)|skin(6)	71				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GCTGAGGGAGGGGCAGGTTCA	0.587													6	94	---	---	---	---
ATP13A4	84239	broad.mit.edu	37	3	193183888	193183888	+	Silent	SNP	T	T	G			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr3:193183888T>G	ENST00000342695.4	-	11	1520	c.1198A>C	c.(1198-1200)Agg>Cgg	p.R400R	ATP13A4_ENST00000295548.3_Silent_p.R400R|ATP13A4_ENST00000392443.3_Silent_p.R400R	NM_032279.2	NP_115655.2	Q4VNC1	AT134_HUMAN	ATPase type 13A4	400					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			breast(2)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(6)|large_intestine(9)|lung(27)|ovary(2)|prostate(3)|skin(11)|upper_aerodigestive_tract(2)	71	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGGAGGAACCTGATGGCATCC	0.448													32	119	---	---	---	---
C4orf29	80167	broad.mit.edu	37	4	128930134	128930134	+	Missense_Mutation	SNP	T	T	G			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr4:128930134T>G	ENST00000388795.5	+	5	495	c.92T>G	c.(91-93)cTt>cGt	p.L31R	C4orf29_ENST00000444616.1_Missense_Mutation_p.L113R|C4orf29_ENST00000398965.1_Missense_Mutation_p.L113R			Q0P651	CD029_HUMAN	chromosome 4 open reading frame 29	113						extracellular region				breast(1)|endometrium(1)|kidney(2)|large_intestine(1)|lung(1)|ovary(1)|urinary_tract(1)	8						TGCATTCATCTTGCTGGAACA	0.299													11	26	---	---	---	---
SNTG1	54212	broad.mit.edu	37	8	51617164	51617164	+	Missense_Mutation	SNP	G	G	A			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr8:51617164G>A	ENST00000522124.1	+	16	1704	c.1043G>A	c.(1042-1044)aGt>aAt	p.S348N	SNTG1_ENST00000517473.1_Missense_Mutation_p.S348N|SNTG1_ENST00000518864.1_Missense_Mutation_p.S348N|SNTG1_ENST00000276467.5_Missense_Mutation_p.S348N	NM_018967.2	NP_061840.1	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1	348	PH.				cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			NS(1)|breast(1)|endometrium(6)|kidney(3)|large_intestine(6)|lung(36)|ovary(6)|prostate(2)|skin(2)|upper_aerodigestive_tract(3)	66		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				CACCAGGACAGTGACCTGCTG	0.557													4	76	---	---	---	---
FAM208B	54906	broad.mit.edu	37	10	5781751	5781751	+	Missense_Mutation	SNP	C	C	G			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr10:5781751C>G	ENST00000328090.5	+	13	2243	c.1618C>G	c.(1618-1620)Cta>Gta	p.L540V	RP11-336A10.2_ENST00000411512.2_RNA	NM_017782.4	NP_060252	Q5VWN6	CJ018_HUMAN	family with sequence similarity 208, member B	540																	GTTAGCCGATCTAGCATTAAG	0.418													29	77	---	---	---	---
OR4P4	81300	broad.mit.edu	37	11	55405907	55405907	+	Missense_Mutation	SNP	G	G	C			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr11:55405907G>C	ENST00000314612.2	+	1	74	c.74G>C	c.(73-75)tGc>tCc	p.C25S		NM_001004124.1	NP_001004124.1	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P, member 4	25					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			autonomic_ganglia(1)|central_nervous_system(1)|kidney(4)|large_intestine(4)|lung(28)|ovary(1)|upper_aerodigestive_tract(1)	40						GAAGTCCTCTGCTTTGTATTA	0.353													3	56	---	---	---	---
SLC22A9	114571	broad.mit.edu	37	11	63137888	63137888	+	Missense_Mutation	SNP	G	G	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr11:63137888G>T	ENST00000279178.3	+	1	609	c.360G>T	c.(358-360)tgG>tgT	p.W120C	SLC22A9_ENST00000310969.4_Missense_Mutation_p.W120C	NM_080866.2	NP_543142.2	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion transporter), member 9	120					transmembrane transport	integral to membrane				breast(2)|cervix(1)|endometrium(2)|kidney(2)|large_intestine(3)|lung(7)|upper_aerodigestive_tract(1)	18						TGGATGGCTGGGTGTATGACA	0.507													15	57	---	---	---	---
C1S	716	broad.mit.edu	37	12	7169982	7169982	+	Missense_Mutation	SNP	T	T	C			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr12:7169982T>C	ENST00000406697.1	+	6	837	c.209T>C	c.(208-210)gTg>gCg	p.V70A	C1S_ENST00000402681.3_Intron|C1S_ENST00000328916.3_Missense_Mutation_p.V70A|C1S_ENST00000360817.5_Missense_Mutation_p.V70A			P09871	C1S_HUMAN	complement component 1, s subcomponent	70	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			breast(1)|endometrium(5)|kidney(2)|large_intestine(8)|liver(4)|lung(8)|prostate(2)|skin(2)|upper_aerodigestive_tract(1)	33					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	TATGACTCAGTGCAGGTATGT	0.463													31	41	---	---	---	---
TESPA1	9840	broad.mit.edu	37	12	55361659	55361659	+	Missense_Mutation	SNP	A	A	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr12:55361659A>T	ENST00000449076.1	-	4	356	c.224T>A	c.(223-225)tTt>tAt	p.F75Y	TESPA1_ENST00000531122.1_5'UTR|TESPA1_ENST00000532804.1_5'UTR|TESPA1_ENST00000524622.1_5'UTR|TESPA1_ENST00000524959.1_5'UTR|TESPA1_ENST00000316577.8_Missense_Mutation_p.F75Y	NM_001136030.2	NP_001129502.1	A2RU30	K0748_HUMAN	thymocyte expressed, positive selection associated 1	75																	TTCCTCAGAAAATCCTTCTTC	0.373													11	27	---	---	---	---
OTOGL	283310	broad.mit.edu	37	12	80647288	80647288	+	Missense_Mutation	SNP	G	G	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr12:80647288G>T	ENST00000458043.2	+	13	1307	c.1301G>T	c.(1300-1302)tGc>tTc	p.C434F	OTOGL_ENST00000547103.1_Missense_Mutation_p.C434F	NM_173591.3	NP_775862.3			otogelin-like									p.C434F(1)		breast(1)|endometrium(3)|kidney(2)|large_intestine(2)|lung(14)|prostate(1)	23						TTGGAAAATTGCCCATGCGGT	0.353													11	39	---	---	---	---
PLXNC1	10154	broad.mit.edu	37	12	94603368	94603368	+	Missense_Mutation	SNP	G	G	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr12:94603368G>T	ENST00000258526.4	+	5	1691	c.1442G>T	c.(1441-1443)tGc>tTc	p.C481F		NM_005761.2	NP_005752.1	O60486	PLXC1_HUMAN	plexin C1	481					axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			breast(2)|central_nervous_system(1)|cervix(2)|endometrium(4)|kidney(4)|large_intestine(12)|lung(30)|ovary(2)|prostate(1)|skin(1)|stomach(1)|upper_aerodigestive_tract(3)|urinary_tract(1)	64						TTTTTTAGGTGCACTTTTCAA	0.393													4	142	---	---	---	---
IGHV3-23	28442	broad.mit.edu	37	14	106725617	106725617	+	RNA	SNP	A	A	G			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr14:106725617A>G	ENST00000390609.2	-	0	116																											ACCTTTTAAAATAGCCACAAG	0.428													25	119	---	---	---	---
ANPEP	290	broad.mit.edu	37	15	90349645	90349645	+	Missense_Mutation	SNP	G	G	A			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr15:90349645G>A	ENST00000300060.6	-	2	483	c.170C>T	c.(169-171)aCc>aTc	p.T57I		NM_001150.2	NP_001141.2	P15144	AMPN_HUMAN	alanyl (membrane) aminopeptidase	57	Cytosolic Ser/Thr-rich junction.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			breast(1)|central_nervous_system(1)|cervix(1)|endometrium(6)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(10)|liver(1)|lung(20)|ovary(3)|prostate(1)|skin(4)|upper_aerodigestive_tract(1)|urinary_tract(3)	57	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	GGCGGGGTTGGTGGTGGCTGA	0.607													5	102	---	---	---	---
IGSF6	10261	broad.mit.edu	37	16	21658767	21658767	+	Silent	SNP	T	T	C			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr16:21658767T>C	ENST00000268389.4	-	2	175	c.114A>G	c.(112-114)ctA>ctG	p.L38L	METTL9_ENST00000358154.3_Intron|METTL9_ENST00000396014.4_Intron	NM_005849.3	NP_005840.2	O95976	IGSF6_HUMAN	immunoglobulin superfamily, member 6	38	Ig-like C2-type.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity			endometrium(1)|large_intestine(1)|lung(4)|urinary_tract(1)	7				GBM - Glioblastoma multiforme(48;0.066)		AGTCCACTTCTAGGTACCACG	0.552													11	38	---	---	---	---
MPP2	4355	broad.mit.edu	37	17	41958703	41958703	+	Missense_Mutation	SNP	T	T	A			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr17:41958703T>A	ENST00000269095.4	-	8	1132	c.828A>T	c.(826-828)gaA>gaT	p.E276D	MPP2_ENST00000518766.1_Missense_Mutation_p.E321D|MPP2_ENST00000461854.1_Missense_Mutation_p.E300D|MPP2_ENST00000523501.1_Missense_Mutation_p.E265D|MPP2_ENST00000377184.3_Missense_Mutation_p.E293D|MPP2_ENST00000536246.1_Missense_Mutation_p.E265D|MPP2_ENST00000520305.1_Missense_Mutation_p.E137D	NM_001278370.1|NM_001278381.1|NM_005374.3	NP_001265299.1|NP_001265310.1|NP_005365	Q14168	MPP2_HUMAN	membrane protein, palmitoylated 2 (MAGUK p55 subfamily member 2)	300	SH3.				signal transduction	cell surface|integral to plasma membrane|membrane fraction	guanylate kinase activity			breast(2)|cervix(1)|endometrium(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|large_intestine(7)|liver(1)|lung(4)|ovary(1)|prostate(7)|skin(1)|upper_aerodigestive_tract(1)	29		Breast(137;0.00314)		BRCA - Breast invasive adenocarcinoma(366;0.12)		CACTGCCCCCTTCGACATGGC	0.582											OREG0024443	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	46	---	---	---	---
ABCA7	10347	broad.mit.edu	37	19	1045143	1045143	+	Missense_Mutation	SNP	C	C	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr19:1045143C>T	ENST00000263094.6	+	12	1589	c.1358C>T	c.(1357-1359)cCa>cTa	p.P453L	ABCA7_ENST00000433129.1_Missense_Mutation_p.P453L|ABCA7_ENST00000435683.2_Missense_Mutation_p.P315L	NM_019112.3	NP_061985.2	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A (ABC1), member 7	453					phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			NS(1)|central_nervous_system(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(2)|kidney(8)|large_intestine(7)|lung(22)|ovary(1)|pancreas(7)|prostate(4)|skin(3)|upper_aerodigestive_tract(1)	65		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACAGAGCACCCAACCCCAGAC	0.627													23	66	---	---	---	---
BLCAP	10904	broad.mit.edu	37	20	36147327	36147327	+	Missense_Mutation	SNP	C	C	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr20:36147327C>T	ENST00000414542.2	-	3	697	c.250G>A	c.(250-252)Gtt>Att	p.V84I	BLCAP_ENST00000397134.1_Missense_Mutation_p.V84I|BLCAP_ENST00000397131.1_Missense_Mutation_p.V84I|BLCAP_ENST00000373537.2_Missense_Mutation_p.V84I|BLCAP_ENST00000397137.1_Missense_Mutation_p.V84I|BLCAP_ENST00000397135.1_Missense_Mutation_p.V84I	NM_001167820.1|NM_001167823.1	NP_001161292.1|NP_001161295.1	P62952	BLCAP_HUMAN	bladder cancer associated protein	84					apoptosis|cell cycle	integral to membrane				breast(1)|large_intestine(1)|lung(2)|stomach(1)	5		Myeloproliferative disorder(115;0.00878)				GTGCCCACAACGCCGGGATCA	0.547													14	34	---	---	---	---
ZNF7	7553	broad.mit.edu	37	8	146068408	146068409	+	Frame_Shift_Ins	INS	-	-	T			TCGA-YL-A8SR-01B-11D-A377-08	TCGA-YL-A8SR-10A-01D-A37A-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	11c34a2d-0b7e-42d7-964b-b4882815490c	f07e44d4-d773-4542-abd8-921540b147bb	g.chr8:146068408_146068409insT	ENST00000528372.1	+	5	2156_2157	c.1916_1917insT	c.(1915-1920)tgtgagfs	p.E640fs	ZNF7_ENST00000325241.6_Frame_Shift_Ins_p.E640fs|ZNF7_ENST00000446747.2_Frame_Shift_Ins_p.E651fs|ZNF7_ENST00000525266.1_Intron|ZNF7_ENST00000325217.5_Intron|ZNF7_ENST00000544249.1_Frame_Shift_Ins_p.E544fs			P17097	ZNF7_HUMAN	zinc finger protein 7	640					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			endometrium(2)|kidney(1)|large_intestine(7)|lung(6)|ovary(5)|pancreas(1)|prostate(1)|upper_aerodigestive_tract(1)|urinary_tract(1)	25	all_cancers(97;1.03e-11)|all_epithelial(106;6.69e-11)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.0812)|Ovarian(118;0.0822)|Acute lymphoblastic leukemia(644;0.143)	Epithelial(56;8.75e-39)|OV - Ovarian serous cystadenocarcinoma(54;1.13e-38)|all cancers(56;8.48e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0355)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;2.11e-07)		TGTGAAGACTGTGAGAAGATAT	0.426													12	112	---	---	---	---
