Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values
LPHN2	23266	broad.mit.edu	37	1	82421583	82421583	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:82421583A>T	uc001dit.3	+	10	1986	c.1805A>T	c.(1804-1806)AAC>ATC	p.N602I	LPHN2_uc001dis.2_Intron|LPHN2_uc001diu.2_Missense_Mutation_p.N602I|LPHN2_uc001div.2_Missense_Mutation_p.N602I|LPHN2_uc009wcd.2_Missense_Mutation_p.N602I|LPHN2_uc001diw.2_Missense_Mutation_p.N186I	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	615	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ACAGTGGACAACCTTCTGAGA	0.388000												
PKN2	5586	broad.mit.edu	37	1	89273385	89273385	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:89273385A>T	uc001dmn.2	+	15	2371	c.2029A>T	c.(2029-2031)AAA>TAA	p.K677*	PKN2_uc010osp.1_Nonsense_Mutation_p.K661*|PKN2_uc010osq.1_Nonsense_Mutation_p.K520*|PKN2_uc009wcv.2_Nonsense_Mutation_p.K629*|PKN2_uc010osr.1_Nonsense_Mutation_p.K342*	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	677	Protein kinase.				signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		AGCTGAATATAAAAACACAAA	0.264000												
LASS2	29956	broad.mit.edu	37	1	150940919	150940919	+	Silent	SNP	G	G	A	rs143495079	byFrequency	TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:150940919G>A	uc001evy.2	-	3	630	c.243C>T	c.(241-243)AAC>AAT	p.N81N	LASS2_uc001evz.2_Silent_p.N81N|LASS2_uc009wmh.2_Translation_Start_Site	NM_181746	NP_859530	Q96G23	CERS2_HUMAN	LAG1 longevity assurance 2	81	Cytoplasmic (Potential).|Homeobox.					endoplasmic reticulum membrane|integral to membrane|nuclear membrane	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sphingosine N-acyltransferase activity				0	all_lung(15;8.07e-35)|Lung NSC(24;7.93e-31)|Lung SC(34;0.00202)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCAAGGTGGCGTTGGGAGGTG	0.557000												
IQGAP3	128239	broad.mit.edu	37	1	156524092	156524092	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:156524092G>A	uc001fpf.2	-	13	1458	c.1383C>T	c.(1381-1383)GGC>GGT	p.G461G	IQGAP3_uc009wsb.1_Silent_p.G418G	NM_178229	NP_839943	Q86VI3	IQGA3_HUMAN	IQ motif containing GTPase activating protein 3	461					small GTPase mediated signal transduction	intracellular	calmodulin binding|Ras GTPase activator activity			ovary(5)|skin(1)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					TGCTCCAGAAGCCACTGGCAT	0.607000												
CD1C	911	broad.mit.edu	37	1	158261141	158261141	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:158261141T>C	uc001fru.2	+	2	571	c.279T>C	c.(277-279)TTT>TTC	p.F93F	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	93	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					TCTACCTCTTTGGATTAACTC	0.378000												
SPTA1	6708	broad.mit.edu	37	1	158595998	158595998	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:158595998T>G	uc001fst.1	-	42	6047	c.5848A>C	c.(5848-5850)AGC>CGC	p.S1950R		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1950	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GTCTTTAGGCTTGTTTCCTTA	0.408000												
SPTA1	6708	broad.mit.edu	37	1	158606546	158606546	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:158606546T>G	uc001fst.1	-	37	5394	c.5195A>C	c.(5194-5196)AAG>ACG	p.K1732T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1732	Spectrin 17.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCGTATCAACTTCTCCCTAAA	0.473000												
LMX1A	4009	broad.mit.edu	37	1	165182992	165182992	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:165182992A>G	uc001gcy.1	-	4	776	c.555T>C	c.(553-555)ACT>ACC	p.T185T	LMX1A_uc001gcz.1_Silent_p.T185T|LMX1A_uc001gcw.1_5'Flank|LMX1A_uc001gcx.1_5'Flank	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	185						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CTTCCTCAGCAGTTCCTTTCC	0.488000												
ASPM	259266	broad.mit.edu	37	1	197111713	197111713	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:197111713T>A	uc001gtu.2	-	3	1926	c.1669A>T	c.(1669-1671)AGT>TGT	p.S557C	ASPM_uc001gtv.2_Missense_Mutation_p.S557C|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	557					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TTTTTATAACTCTTAGATTTA	0.343000												
PTPRC	5788	broad.mit.edu	37	1	198711490	198711490	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:198711490A>C	uc001gur.1	+	25	2865	c.2685A>C	c.(2683-2685)CAA>CAC	p.Q895H	PTPRC_uc001gus.1_Missense_Mutation_p.Q847H|PTPRC_uc001gut.1_Missense_Mutation_p.Q734H	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	895	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.	Substrate (By similarity).			axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						TGATGGTTCAAGTAGAGGTAT	0.363000												
MYBPH	4608	broad.mit.edu	37	1	203144565	203144565	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:203144565A>G	uc001gzh.1	-	2	289	c.230T>C	c.(229-231)CTG>CCG	p.L77P	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	77	Fibronectin type-III 1.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		ATCCAGGGTCAGCAGCAGTGG	0.652000												
ESRRG	2104	broad.mit.edu	37	1	216692701	216692701	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr1:216692701A>C	uc001hkw.1	-	6	1091	c.925T>G	c.(925-927)TTG>GTG	p.L309V	ESRRG_uc001hky.1_Missense_Mutation_p.L286V|ESRRG_uc009xdp.1_Missense_Mutation_p.L286V|ESRRG_uc001hkz.1_Missense_Mutation_p.L247V|ESRRG_uc010puc.1_Missense_Mutation_p.L286V|ESRRG_uc001hla.1_Missense_Mutation_p.L286V|ESRRG_uc001hlb.1_Missense_Mutation_p.L286V|ESRRG_uc010pud.1_Missense_Mutation_p.L117V|ESRRG_uc001hlc.1_Missense_Mutation_p.L286V|ESRRG_uc001hld.1_Missense_Mutation_p.L286V|ESRRG_uc001hkx.1_Missense_Mutation_p.L321V|ESRRG_uc009xdo.1_Missense_Mutation_p.L286V|ESRRG_uc001hle.1_Missense_Mutation_p.L286V	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	309					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	CCAAGGATCAAAATTTCCATC	0.473000												
CUBN	8029	broad.mit.edu	37	10	16918918	16918918	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr10:16918918G>C	uc001ioo.2	-	57	9136	c.9084C>G	c.(9082-9084)TTC>TTG	p.F3028L	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Missense_Mutation_p.F384L	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3028	CUB 22.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGGAAAACTTGAATCCGAAGT	0.433000												
MYO3A	53904	broad.mit.edu	37	10	26463375	26463375	+	Nonsense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr10:26463375T>A	uc001isn.2	+	30	4542	c.4182T>A	c.(4180-4182)TAT>TAA	p.Y1394*	MYO3A_uc009xkp.1_Intron|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1394					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						ATAATTTGTATTCCTATCCCA	0.383000												
SORBS1	10580	broad.mit.edu	37	10	97141493	97141493	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr10:97141493G>A	uc001kkp.2	-	16	1647	c.1602C>T	c.(1600-1602)AGC>AGT	p.S534S	SORBS1_uc001kkk.2_Silent_p.S112S|SORBS1_uc001kkl.2_Silent_p.S136S|SORBS1_uc001kkn.2_Silent_p.S321S|SORBS1_uc001kkm.2_Silent_p.S390S|SORBS1_uc001kko.2_Silent_p.S556S|SORBS1_uc001kkq.2_Silent_p.S419S|SORBS1_uc001kkr.2_Silent_p.S324S|SORBS1_uc001kks.2_Silent_p.S324S|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Silent_p.S365S|SORBS1_uc001kkv.2_Silent_p.S456S|SORBS1_uc001kkw.2_Silent_p.S488S|SORBS1_uc010qoe.1_Silent_p.S333S|SORBS1_uc010qof.1_Silent_p.S686S	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	534					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		ATTCGTAAATGCTCTTGGGCT	0.393000												
CPN1	1369	broad.mit.edu	37	10	101824989	101824989	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr10:101824989G>A	uc001kql.2	-	4	975	c.715C>T	c.(715-717)CGC>TGC	p.R239C		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	239	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		CTGGCGGTGCGGCGGACCCCT	0.607000												
OR51D1	390038	broad.mit.edu	37	11	4661157	4661157	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:4661157T>G	uc010qyk.1	+	1	137	c.137T>G	c.(136-138)TTT>TGT	p.F46C		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCACTGTGTTTTATGTATGCC	0.522000												
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5624861	5624861	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:5624861T>C	uc001mbf.2	+	2	647	c.403T>C	c.(403-405)TTC>CTC	p.F135L	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Intron|TRIM6_uc010qzj.1_5'UTR|TRIM6_uc001mbc.1_Missense_Mutation_p.F107L|TRIM6_uc001mbe.2_5'UTR|TRIM6_uc010qzk.1_Intron|TRIM6_uc010qzl.1_Intron|TRIM6_uc001mbd.2_Missense_Mutation_p.F135L|TRIM6_uc001mbg.1_5'Flank|TRIM6_uc009yep.1_5'Flank	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	135						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		ACTGCAGCTCTTCTGTCAGGA	0.557000												
OR52N1	79473	broad.mit.edu	37	11	5809592	5809592	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:5809592A>G	uc010qzo.1	-	1	455	c.455T>C	c.(454-456)CTT>CCT	p.L152P	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		CACACCCCTAAGAAAAGTGAG	0.517000												
OR2AG2	338755	broad.mit.edu	37	11	6789842	6789842	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:6789842G>A	uc001meq.1	-	1	347	c.347C>T	c.(346-348)GCC>GTC	p.A116V		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GGCCATGAAGGCCAGTAGGAG	0.527000												
SYT9	143425	broad.mit.edu	37	11	7439317	7439317	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:7439317T>C	uc001mfe.2	+	5	1532	c.1295T>C	c.(1294-1296)ATT>ACT	p.I432T	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	432	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		CCCGAGAACATTGACCAAATC	0.488000												
BTBD10	84280	broad.mit.edu	37	11	13441177	13441177	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:13441177A>C	uc001mkz.2	-	4	671	c.414T>G	c.(412-414)AGT>AGG	p.S138R	BTBD10_uc010rcl.1_Missense_Mutation_p.S146R|BTBD10_uc001mla.2_Missense_Mutation_p.S122R|BTBD10_uc009ygn.2_RNA|BTBD10_uc010rcm.1_Missense_Mutation_p.S90R|BTBD10_uc010rcn.1_Missense_Mutation_p.S107R|BTBD10_uc009ygo.2_Missense_Mutation_p.S90R	NM_032320	NP_115696	Q9BSF8	BTBDA_HUMAN	K+ channel tetramerization protein	138	Ser-rich.					nucleus					0				Epithelial(150;0.0214)		TACCATCTGAACTTGACTGAC	0.463000												
TRAF6	7189	broad.mit.edu	37	11	36512115	36512115	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:36512115C>T	uc001mwr.1	-	8	1182	c.842G>A	c.(841-843)AGC>AAC	p.S281N	TRAF6_uc001mws.1_Missense_Mutation_p.S281N	NM_145803	NP_665802	Q9Y4K3	TRAF6_HUMAN	TNF receptor-associated factor 6	281	Interaction with TAX1BP1.				activation of MAPK activity|activation of NF-kappaB-inducing kinase activity|anti-apoptosis|apoptosis|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|ossification|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of osteoclast differentiation|positive regulation of T cell cytokine production|protein autoubiquitination|protein K63-linked ubiquitination|response to interleukin-1|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	CD40 receptor complex|cell cortex|cytosol|endosome membrane|internal side of plasma membrane|nuclear membrane	histone deacetylase binding|mitogen-activated protein kinase kinase kinase binding|protein kinase B binding|protein N-terminus binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				GGGTATAACGCTCAAACTATG	0.478000												
HSD17B12	51144	broad.mit.edu	37	11	43876699	43876699	+	Silent	SNP	G	G	A	rs139099004	byFrequency	TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:43876699G>A	uc001mxq.3	+	11	1075	c.840G>A	c.(838-840)TCG>TCA	p.S280S		NM_016142	NP_057226	Q53GQ0	DHB12_HUMAN	hydroxysteroid (17-beta) dehydrogenase 12	280	Helical; (Potential).				long-chain fatty-acyl-CoA biosynthetic process|steroid biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	estradiol 17-beta-dehydrogenase activity|long-chain-3-hydroxyacyl-CoA dehydrogenase activity				0						CCTAGGGCTCGATAATCTCAA	0.333000												
OR4P4	81300	broad.mit.edu	37	11	55405859	55405859	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:55405859T>C	uc010rij.1	+	1	26	c.26T>C	c.(25-27)TTG>TCG	p.L9S		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	9	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						AATAGCACTTTGTTTATTCTC	0.323000												
PCNXL3	399909	broad.mit.edu	37	11	65387008	65387008	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:65387008C>T	uc001oey.2	+	7	1706	c.1706C>T	c.(1705-1707)GCG>GTG	p.A569V		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	569						integral to membrane					0						CTCTGGGCAGCGGCCGAGGAG	0.607000												
LRRC32	2615	broad.mit.edu	37	11	76371306	76371306	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:76371306G>C	uc001oxq.3	-	3	1574	c.1331C>G	c.(1330-1332)TCC>TGC	p.S444C	LRRC32_uc001oxr.3_Missense_Mutation_p.S444C|LRRC32_uc010rsf.1_Missense_Mutation_p.S444C	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	444	LRR 16.|Extracellular (Potential).					integral to plasma membrane					0						GCTGCGGAGGGAGGTGATGCC	0.642000												
CCDC89	220388	broad.mit.edu	37	11	85396349	85396349	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:85396349C>A	uc001pau.1	-	1	972	c.825G>T	c.(823-825)TTG>TTT	p.L275F		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	275	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				ACAGCTGCAGCAACTCCTCTT	0.532000												
PGR	5241	broad.mit.edu	37	11	100999184	100999184	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:100999184G>A	uc001pgh.2	-	1	1361	c.618C>T	c.(616-618)TCC>TCT	p.S206S	PGR_uc001pgi.2_Silent_p.S206S|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA|uc010rum.1_5'Flank	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	206	Modulating, Pro-Rich.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	CTGGGGCCCCGGACCAGTGAG	0.692000												
OR10G7	390265	broad.mit.edu	37	11	123908818	123908818	+	Silent	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr11:123908818A>C	uc001pzq.1	-	1	891	c.891T>G	c.(889-891)GCT>GCG	p.A297A		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GCTTCAACAGAGCTTTCTTTA	0.408000												
CD163	9332	broad.mit.edu	37	12	7639263	7639263	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr12:7639263C>A	uc001qsz.3	-	10	2418	c.2290G>T	c.(2290-2292)GAG>TAG	p.E764*	CD163_uc001qta.3_Nonsense_Mutation_p.E764*|CD163_uc009zfw.2_Nonsense_Mutation_p.E797*	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	764	SRCR 7.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TTAATGGCCTCTCCACAGCCC	0.532000												
A2ML1	144568	broad.mit.edu	37	12	9004550	9004550	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr12:9004550G>A	uc001quz.3	+	19	2503	c.2405G>A	c.(2404-2406)CGT>CAT	p.R802H	A2ML1_uc001qva.1_Missense_Mutation_p.R382H|A2ML1_uc010sgm.1_Missense_Mutation_p.R302H	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	646						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						TCAGTAGTCCGTGGGGAATCC	0.502000												
SP1	6667	broad.mit.edu	37	12	53777235	53777235	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr12:53777235C>G	uc001scw.2	+	3	1601	c.1504C>G	c.(1504-1506)CTC>GTC	p.L502V	SP1_uc010sog.1_Missense_Mutation_p.L495V	NM_138473	NP_612482	P08047	SP1_HUMAN	Sp1 transcription factor isoform a	502	Transactivation domain C (highly charged).				positive regulation by host of viral transcription|positive regulation of transcription from RNA polymerase II promoter	cytoplasm	double-stranded DNA binding|histone deacetylase binding|HMG box domain binding|protein C-terminus binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(357;0.00527)		CAACACCACTCTCACACCCAT	0.552000												
MYF6	4618	broad.mit.edu	37	12	81101535	81101535	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr12:81101535T>G	uc001szf.1	+	1	90	c.37T>G	c.(37-39)TTC>GTC	p.F13V		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	13					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CTCCTATTTCTTCTACTTGGA	0.493000												
OAS1	4938	broad.mit.edu	37	12	113346553	113346553	+	Silent	SNP	G	G	A	rs147639145	by1000genomes	TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr12:113346553G>A	uc001tud.2	+	2	499	c.393G>A	c.(391-393)GCG>GCA	p.A131A	OAS1_uc010syn.1_Silent_p.A130A|OAS1_uc010syo.1_Silent_p.A130A|OAS1_uc001tub.2_Silent_p.A131A|OAS1_uc001tuc.2_Silent_p.A131A|OAS1_uc009zwf.2_Silent_p.A130A	NM_016816	NP_058132	P00973	OAS1_HUMAN	2',5'-oligoadenylate synthetase 1 isoform 1	131	Necessary for binding to dsRNA.				interferon-gamma-mediated signaling pathway|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|type I interferon-mediated signaling pathway	endoplasmic reticulum|microsome|mitochondrion|nucleus	ATP binding|nucleotidyltransferase activity|RNA binding			ovary(2)	2						ACCCCCGTGCGCTCAGCTTCG	0.572000												
POU4F1	5457	broad.mit.edu	37	13	79175862	79175862	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr13:79175862C>T	uc001vkv.2	-	2	1182	c.948G>A	c.(946-948)ACG>ACA	p.T316T	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	316	POU-specific.				axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		TGTGCGAGAGCGTGAGCGACT	0.652000												
NALCN	259232	broad.mit.edu	37	13	101717784	101717784	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr13:101717784C>T	uc001vox.1	-	40	4765	c.4576G>A	c.(4576-4578)GGC>AGC	p.G1526S		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1526	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GTGACGTCGCCGCCATTGTGG	0.587000												
NALCN	259232	broad.mit.edu	37	13	101747941	101747941	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr13:101747941A>G	uc001vox.1	-	28	3442	c.3253T>C	c.(3253-3255)TGG>CGG	p.W1085R		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1085	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CGGGGCACCCAAAATCCAGGT	0.333000												
SOS2	6655	broad.mit.edu	37	14	50666574	50666574	+	Splice_Site	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr14:50666574C>T	uc001wxs.3	-	4	444	c.346_splice	c.e4-1	p.E116_splice	SOS2_uc010tql.1_Splice_Site_p.E116_splice	NM_006939	NP_008870	Q07890	SOS2_HUMAN	son of sevenless homolog 2						apoptosis|axon guidance|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	DNA binding|protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(2)	2	all_epithelial(31;0.000822)|Breast(41;0.0065)					CTAATACTTCCTGTGAAAAGA	0.294000												
ACOT4	122970	broad.mit.edu	37	14	74060458	74060458	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr14:74060458C>T	uc001xoo.2	+	2	764	c.510C>T	c.(508-510)CTC>CTT	p.L170L		NM_152331	NP_689544	Q8N9L9	ACOT4_HUMAN	acyl-CoA thioesterase 4	170					acyl-CoA metabolic process|dicarboxylic acid metabolic process|long-chain fatty acid metabolic process|saturated monocarboxylic acid metabolic process|short-chain fatty acid metabolic process|succinyl-CoA metabolic process|unsaturated monocarboxylic acid metabolic process|very long-chain fatty acid metabolic process	peroxisome	carboxylesterase activity|palmitoyl-CoA hydrolase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00331)		GAGGGGGCCTCTTGGAATATC	0.423000												
FLRT2	23768	broad.mit.edu	37	14	86089626	86089626	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr14:86089626G>A	uc001xvr.2	+	2	2535	c.1768G>A	c.(1768-1770)GAG>AAG	p.E590K	FLRT2_uc010atd.2_Missense_Mutation_p.E590K	NM_013231	NP_037363	O43155	FLRT2_HUMAN	fibronectin leucine rich transmembrane protein 2	590	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane|proteinaceous extracellular matrix	protein binding, bridging|receptor signaling protein activity			ovary(3)|haematopoietic_and_lymphoid_tissue(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.0319)		TGATTATTGCGAGGCAGGCAC	0.488000												
KIAA1409	57578	broad.mit.edu	37	14	94088470	94088470	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr14:94088470T>G	uc001ybv.1	+	28	4509	c.4426T>G	c.(4426-4428)TCT>GCT	p.S1476A	KIAA1409_uc001ybs.1_Missense_Mutation_p.S1454A	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1631						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CGACAGCGACTCTCTTGTATT	0.488000												
SERPINA5	5104	broad.mit.edu	37	14	95058443	95058443	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr14:95058443C>T	uc001ydm.2	+	6	1298	c.1088C>T	c.(1087-1089)GCG>GTG	p.A363V	SERPINA3_uc001ydo.3_5'UTR	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	363					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	ACCAGAGCAGCGGCAGCCACG	0.567000												
MKRN3	7681	broad.mit.edu	37	15	23811873	23811873	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr15:23811873T>C	uc001ywh.3	+	1	1420	c.944T>C	c.(943-945)ATG>ACG	p.M315T	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Missense_Mutation_p.M315T	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	315	RING-type.					ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GGCATCTGCATGGAGGTTGTC	0.498000												
BAHD1	22893	broad.mit.edu	37	15	40754422	40754422	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr15:40754422C>T	uc001zlu.2	+	3	1815	c.1744C>T	c.(1744-1746)CGC>TGC	p.R582C	BAHD1_uc001zlt.2_Missense_Mutation_p.R581C|BAHD1_uc010bbp.1_Missense_Mutation_p.R581C|BAHD1_uc001zlv.2_Missense_Mutation_p.R582C	NM_014952	NP_055767	Q8TBE0	BAHD1_HUMAN	bromo adjacent homology domain containing 1	582	Arg-rich.				heterochromatin formation|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromatin silencing complex|chromosome	chromatin binding|DNA binding|protein binding				0		all_cancers(109;8.28e-19)|all_epithelial(112;2.64e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.46e-06)|BRCA - Breast invasive adenocarcinoma(123;0.08)		ACGCCCTCGCCGCCGCCGTCG	0.647000												
PKM2	5315	broad.mit.edu	37	15	72511293	72511293	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr15:72511293C>T	uc002atx.1	-	2	387	c.146G>A	c.(145-147)TGT>TAT	p.C49Y	PKM2_uc010bit.1_Missense_Mutation_p.C54Y|PKM2_uc010uki.1_Missense_Mutation_p.C123Y|PKM2_uc002atv.1_Missense_Mutation_p.C84Y|PKM2_uc002atw.1_Missense_Mutation_p.C49Y|PKM2_uc002aty.1_Missense_Mutation_p.C49Y|PKM2_uc010ukj.1_Missense_Mutation_p.V65I|PKM2_uc010ukk.1_Missense_Mutation_p.C49Y|PKM2_uc010biu.1_Missense_Mutation_p.C70Y|PKM2_uc002atz.1_RNA	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	49					glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	ACCAATGGTACAGATGATGCC	0.527000												
BBS4	585	broad.mit.edu	37	15	73023934	73023934	+	Silent	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr15:73023934C>G	uc002avb.2	+	12	946	c.903C>G	c.(901-903)CCC>CCG	p.P301P	BBS4_uc010ukv.1_Silent_p.P289P|BBS4_uc002avc.2_Silent_p.P129P|BBS4_uc002avd.2_Silent_p.P309P|BBS4_uc010bja.2_Silent_p.P57P	NM_033028	NP_149017	Q96RK4	BBS4_HUMAN	Bardet-Biedl syndrome 4	301	Interaction with PCM1.|TPR 7.				adult behavior|brain morphogenesis|cell cycle cytokinesis|centrosome organization|cerebral cortex development|convergent extension involved in gastrulation|dendrite development|fat cell differentiation|heart looping|hippocampus development|intracellular transport|maintenance of protein location in nucleus|melanosome transport|microtubule anchoring at centrosome|neural tube closure|nonmotile primary cilium assembly|photoreceptor cell maintenance|pigment granule aggregation in cell center|positive regulation of flagellum assembly|regulation of cilium beat frequency involved in ciliary motility|regulation of cytokinesis|regulation of lipid metabolic process|retina homeostasis|retinal rod cell development|sensory perception of smell|sensory processing|spermatid development|striatum development	BBSome|centriolar satellite|centriole|cilium membrane|microtubule basal body|motile cilium|nonmotile primary cilium|nucleus|pericentriolar material	alpha-tubulin binding|beta-tubulin binding|dynactin binding|microtubule motor activity				0						ACTTGGCACCCTTTGATTGGA	0.473000									Bardet-Biedl_syndrome			
HAPLN3	145864	broad.mit.edu	37	15	89421211	89421211	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr15:89421211C>T	uc002bnc.2	-	5	1201	c.1073G>A	c.(1072-1074)CGC>CAC	p.R358H	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.R420H	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	358	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					CTAGTGCTGGCGGTAGCAGTA	0.587000												
TRAF7	84231	broad.mit.edu	37	16	2223996	2223996	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:2223996G>A	uc002cow.2	+	13	1309	c.1210G>A	c.(1210-1212)GTC>ATC	p.V404I		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	404	WD 1.				activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GTGTCTCTGCGTCTACTCCAT	0.597000												
SULT1A2	6799	broad.mit.edu	37	16	28606764	28606764	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:28606764G>T	uc002dqg.1	-	4	647	c.296C>A	c.(295-297)ACA>AAA	p.T99K	uc010vct.1_Intron|SULT1A2_uc002dqh.1_Missense_Mutation_p.T99K	NM_177528	NP_803564	P50226	ST1A2_HUMAN	sulfotransferase family, cytosolic, 1A,	99					3'-phosphoadenosine 5'-phosphosulfate metabolic process|amine biosynthetic process|catecholamine metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						TGGGGCTGGTGTGTTTTTCAG	0.537000												
KIF22	3835	broad.mit.edu	37	16	29810471	29810471	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:29810471G>A	uc002dts.3	+	5	749	c.725G>A	c.(724-726)CGC>CAC	p.R242H	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|KIF22_uc010vdv.1_Missense_Mutation_p.R174H|KIF22_uc010vdw.1_Missense_Mutation_p.R174H|KIF22_uc010bzf.2_Missense_Mutation_p.R174H	NM_007317	NP_015556	Q14807	KIF22_HUMAN	kinesin family member 22	242	Kinesin-motor.				blood coagulation|DNA repair|microtubule-based movement|mitosis	cytosol|kinetochore|microtubule|nucleus	ATP binding|DNA binding|microtubule motor activity|protein binding				0						CTCAACCAGCGCTCCTCCCGC	0.612000												
SALL1	6299	broad.mit.edu	37	16	51173596	51173596	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:51173596G>A	uc010vgs.1	-	2	2568	c.2537C>T	c.(2536-2538)GCC>GTC	p.A846V	SALL1_uc010vgr.1_Missense_Mutation_p.A749V|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	846					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GTCTTGGGAGGCGTCTGCAGA	0.478000												
IRX6	79190	broad.mit.edu	37	16	55363013	55363013	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:55363013A>C	uc002ehy.2	+	5	1656	c.1123A>C	c.(1123-1125)AGT>CGT	p.S375R	IRX6_uc002ehx.2_Missense_Mutation_p.S375R	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	375						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						TAGGCCACGAAGTCCTGAGTG	0.637000												
KARS	3735	broad.mit.edu	37	16	75665710	75665710	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:75665710C>T	uc002feq.2	-	8	1007	c.959G>A	c.(958-960)CGC>CAC	p.R320H	KARS_uc002fer.2_Missense_Mutation_p.R348H|KARS_uc002fes.2_Missense_Mutation_p.R164H	NM_005548	NP_005539	Q15046	SYK_HUMAN	lysyl-tRNA synthetase isoform 2	320					interspecies interaction between organisms|lysyl-tRNA aminoacylation|tRNA processing	cytosol|extracellular region|mitochondrial matrix|nucleus|plasma membrane|soluble fraction	ATP binding|lysine-tRNA ligase activity|metal ion binding|tRNA binding			ovary(2)	2					L-Lysine(DB00123)	CCGGAACTGGCGTCCAATTTC	0.438000												
CNTNAP4	85445	broad.mit.edu	37	16	76569647	76569647	+	Silent	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr16:76569647T>G	uc002feu.1	+	20	3346	c.2961T>G	c.(2959-2961)ACT>ACG	p.T987T	CNTNAP4_uc002fev.1_Silent_p.T851T|CNTNAP4_uc010chb.1_Silent_p.T914T|CNTNAP4_uc002fex.1_Silent_p.T990T	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	987	Extracellular (Potential).|EGF-like 2.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GTGACTGCACTTTCTCTGCAT	0.458000												
SMG6	23293	broad.mit.edu	37	17	2202841	2202841	+	Silent	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr17:2202841C>A	uc002fub.1	-	2	1261	c.1206G>T	c.(1204-1206)CGG>CGT	p.R402R	SMG6_uc002fud.1_Silent_p.R371R	NM_017575	NP_060045	Q86US8	EST1A_HUMAN	Smg-6 homolog, nonsense mediated mRNA decay	402	Interaction with telomeric DNA.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation|telomere maintenance	chromosome, telomeric region|cytosol|nucleolus|telomerase holoenzyme complex	endoribonuclease activity|metal ion binding|protein binding|telomeric DNA binding			central_nervous_system(2)|lung(1)|kidney(1)	4						GACCACGACCCCGAAGTTCTT	0.532000												
TP53	7157	broad.mit.edu	37	17	7573994	7573994	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr17:7573994T>C	uc002gim.2	-	10	1227	c.1033A>G	c.(1033-1035)AAT>GAT	p.N345D	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Intron|TP53_uc010cne.1_Intron|TP53_uc010cnf.1_3'UTR|TP53_uc010cng.1_3'UTR|TP53_uc002gii.1_Missense_Mutation_p.N213D|TP53_uc010cnh.1_3'UTR|TP53_uc010cni.1_3'UTR|TP53_uc002gij.2_Missense_Mutation_p.N345D	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	345	Oligomerization.|Interaction with HIPK1 (By similarity).|Interaction with CARM1.|Nuclear export signal.|Interaction with HIPK2.				activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.N345fs*25(3)|p.L344fs*23(2)|p.L344fs*22(1)|p.?(1)|p.R342_N345delRELN(1)|p.I332fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AAGGCCTCATTCAGCTCTCGG	0.527000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)		
SSH2	85464	broad.mit.edu	37	17	27999110	27999110	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr17:27999110C>T	uc002heo.1	-	8	571	c.571G>A	c.(571-573)GCC>ACC	p.A191T	SSH2_uc010wbh.1_Missense_Mutation_p.A218T|SSH2_uc002hep.1_Missense_Mutation_p.A191T	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	191					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						TGCGCTCTGGCGACTTCACAA	0.468000												
THRA	7067	broad.mit.edu	37	17	38244651	38244651	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr17:38244651G>A	uc002htw.2	+	8	1363	c.880G>A	c.(880-882)GTA>ATA	p.V294I	THRA_uc010cwp.1_Missense_Mutation_p.V294I|THRA_uc002htv.2_Missense_Mutation_p.V294I|THRA_uc002htx.2_Missense_Mutation_p.V294I	NM_003250	NP_003241	P10827	THA_HUMAN	thyroid hormone receptor, alpha isoform 2	294	Ligand-binding.				negative regulation of RNA polymerase II transcriptional preinitiation complex assembly|negative regulation of transcription initiation, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter	cytosol|nucleoplasm	protein domain specific binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|TBP-class protein binding|thyroid hormone binding|thyroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding				0	Colorectal(19;0.000442)	Myeloproliferative disorder(1115;0.0255)			Levothyroxine(DB00451)|Liothyronine(DB00279)	CGGCCTGGGCGTAGTCTCCGA	0.607000												
COLEC12	81035	broad.mit.edu	37	18	321787	321787	+	Missense_Mutation	SNP	G	G	A	rs138304922		TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr18:321787G>A	uc002kkm.2	-	9	2299	c.2084C>T	c.(2083-2085)CCG>CTG	p.P695L		NM_130386	NP_569057	Q5KU26	COL12_HUMAN	collectin sub-family member 12	695	Extracellular (Potential).|C-type lectin.				carbohydrate mediated signaling|innate immune response|phagocytosis, recognition|protein homooligomerization	collagen|integral to membrane	galactose binding|low-density lipoprotein particle binding|metal ion binding|pattern recognition receptor activity|scavenger receptor activity			ovary(1)|pancreas(1)	2		all_cancers(4;0.0442)|Myeloproliferative disorder(11;0.0426)				CCAGTTATCCGGCTGTCCAGC	0.428000												
DLGAP1	9229	broad.mit.edu	37	18	3879582	3879582	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr18:3879582C>T	uc002kmf.2	-	1	554	c.487G>A	c.(487-489)GTC>ATC	p.V163I	DLGAP1_uc010wyz.1_Missense_Mutation_p.V163I|DLGAP1_uc002kmk.2_Missense_Mutation_p.V163I|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	163					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CCCCCGTTGACGCTGCCCTTG	0.716000												
C18orf34	374864	broad.mit.edu	37	18	30847187	30847187	+	Silent	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr18:30847187T>A	uc002kxn.2	-	12	1393	c.1251A>T	c.(1249-1251)GCA>GCT	p.A417A	C18orf34_uc010dme.1_5'Flank|C18orf34_uc010xbr.1_Silent_p.A417A|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Silent_p.A417A|C18orf34_uc002kxp.2_Silent_p.A417A	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	417										ovary(1)	1						AATCATTAACTGCTTCCAGAT	0.318000												
ASXL3	80816	broad.mit.edu	37	18	31324793	31324793	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr18:31324793G>A	uc010dmg.1	+	12	5036	c.4981G>A	c.(4981-4983)GTA>ATA	p.V1661I	ASXL3_uc002kxq.2_Missense_Mutation_p.V1368I	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1661					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CAGGAATCTTGTAACAAATGT	0.438000												
CDH7	1005	broad.mit.edu	37	18	63511174	63511174	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr18:63511174G>T	uc002ljz.2	+	7	1433	c.1108G>T	c.(1108-1110)GAT>TAT	p.D370Y	CDH7_uc002lka.2_Missense_Mutation_p.D370Y|CDH7_uc002lkb.2_Missense_Mutation_p.D370Y	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	370	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				AATTGTGGAAGATGTAGATGA	0.493000												
CDH7	1005	broad.mit.edu	37	18	63547907	63547907	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr18:63547907G>T	uc002ljz.2	+	12	2460	c.2135G>T	c.(2134-2136)TGG>TTG	p.W712L	CDH7_uc002lkb.2_Missense_Mutation_p.W712L	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	712	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				GAATTTATTTGGGAAAGATTA	0.438000												
DAPK3	1613	broad.mit.edu	37	19	3969700	3969700	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:3969700G>A	uc002lzc.1	-	1	127	c.34C>T	c.(34-36)CAT>TAT	p.H12Y	DAPK3_uc002lzd.1_Missense_Mutation_p.H12Y	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	12					apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		ATCTCATAATGGTCCTCCACG	0.632000											OREG0025158	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)
MUC16	94025	broad.mit.edu	37	19	9087815	9087815	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:9087815T>C	uc002mkp.2	-	1	4204	c.4000A>G	c.(4000-4002)AGT>GGT	p.S1334G		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1334	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGAGCTGAACTTGTATCCTTA	0.527000												
ZNF208	7757	broad.mit.edu	37	19	22155381	22155381	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:22155381T>A	uc002nqp.2	-	5	2304	c.2155A>T	c.(2155-2157)ACC>TCC	p.T719S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				GTAGTAAGGGTTGAGACCTTA	0.353000												
HKR1	284459	broad.mit.edu	37	19	37853775	37853775	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:37853775A>G	uc002ogb.2	+	6	1347	c.1078A>G	c.(1078-1080)AAG>GAG	p.K360E	HKR1_uc002ofx.2_Missense_Mutation_p.K76E|HKR1_uc002ofy.2_Missense_Mutation_p.K76E|HKR1_uc002oga.2_Missense_Mutation_p.K342E|HKR1_uc010xto.1_Missense_Mutation_p.K342E|HKR1_uc002ogc.2_Missense_Mutation_p.K341E|HKR1_uc010xtp.1_Missense_Mutation_p.K299E|HKR1_uc002ogd.2_Missense_Mutation_p.K299E	NM_181786	NP_861451	P10072	HKR1_HUMAN	GLI-Kruppel family member HKR1	360	C2H2-type 3.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTATGTGTGCAAGGAATGTGG	0.517000												
PSG4	5672	broad.mit.edu	37	19	43698670	43698670	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:43698670G>A	uc002ovy.2	-	5	1167	c.1065C>T	c.(1063-1065)TTC>TTT	p.F355F	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Silent_p.F262F|PSG4_uc002ovz.2_Silent_p.F262F	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	355	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				TAGACTCGGCGAAGCAGGACA	0.453000												
CARD8	22900	broad.mit.edu	37	19	48733886	48733886	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:48733886C>A	uc002pie.3	-	6	839	c.526G>T	c.(526-528)GCC>TCC	p.A176S	CARD8_uc002pii.3_Missense_Mutation_p.A282S|CARD8_uc010xzi.1_Missense_Mutation_p.A177S|CARD8_uc010els.2_Missense_Mutation_p.A215S|CARD8_uc010xzj.1_Missense_Mutation_p.A282S|CARD8_uc010xzk.1_Missense_Mutation_p.A201S|CARD8_uc002pif.3_Missense_Mutation_p.A176S|CARD8_uc002pig.3_Missense_Mutation_p.A7S|CARD8_uc002pih.3_Missense_Mutation_p.A232S|CARD8_uc010xzl.1_Missense_Mutation_p.A232S|CARD8_uc010xzm.1_Missense_Mutation_p.A282S	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	176					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		TCCACCCGGGCTGGATGCTCC	0.577000												
PTOV1	53635	broad.mit.edu	37	19	50360274	50360274	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:50360274C>T	uc002pqf.1	+	6	771	c.601C>T	c.(601-603)CGC>TGC	p.R201C	PTOV1_uc002ppz.3_RNA|PTOV1_uc002pqb.3_Missense_Mutation_p.R169C|PTOV1_uc002pqa.2_RNA|PTOV1_uc002pqc.1_RNA|PTOV1_uc002pqd.2_RNA|PTOV1_uc002pqe.1_RNA	NM_017432	NP_059128	Q86YD1	PTOV1_HUMAN	prostate tumor overexpressed 1	201	Interaction with FLOT1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perinuclear region of cytoplasm|plasma membrane					0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.0132)		CTGTGAGGTGCGCGTGCTCAT	0.657000												
ZNF534	147658	broad.mit.edu	37	19	52937331	52937331	+	Missense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:52937331C>G	uc002pzk.2	+	2	200	c.139C>G	c.(139-141)CTA>GTA	p.L47V	ZNF534_uc002pzj.1_Missense_Mutation_p.L47V|ZNF534_uc010epo.1_Missense_Mutation_p.L47V|ZNF534_uc002pzl.2_Missense_Mutation_p.L47V	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTGGTCTCCCTAGGTGAGGA	0.498000												
NLRP7	199713	broad.mit.edu	37	19	55449462	55449462	+	Silent	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:55449462C>A	uc002qih.3	-	5	2155	c.2079G>T	c.(2077-2079)CGG>CGT	p.R693R	NLRP7_uc002qig.3_Silent_p.R665R|NLRP7_uc002qii.3_Silent_p.R693R|NLRP7_uc010esk.2_Silent_p.R693R|NLRP7_uc010esl.2_Silent_p.R721R	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	693	LRR 2.		R -> W (in HYDM).|R -> P (in HYDM).|R -> Q (in HYDM).				ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CACAAAGAATCCGCACAGAAG	0.468000												
USP29	57663	broad.mit.edu	37	19	57641627	57641627	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:57641627A>G	uc002qny.2	+	4	1940	c.1584A>G	c.(1582-1584)CAA>CAG	p.Q528Q		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	528					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ATAACGAGCAAGTTTATATTC	0.408000												
ZNF135	7694	broad.mit.edu	37	19	58578607	58578607	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:58578607G>A	uc010yhq.1	+	5	887	c.791G>A	c.(790-792)CGG>CAG	p.R264Q	ZNF135_uc002qre.2_Missense_Mutation_p.R252Q|ZNF135_uc002qrd.1_Missense_Mutation_p.R210Q|ZNF135_uc002qrf.2_Missense_Mutation_p.R210Q|ZNF135_uc002qrg.2_Missense_Mutation_p.R222Q|ZNF135_uc010yhr.1_Missense_Mutation_p.R73Q	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	264					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		AAAGGCTTCCGGAACAGCTCG	0.507000												
A1BG	1	broad.mit.edu	37	19	58862776	58862776	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr19:58862776G>A	uc002qsd.3	-	5	953	c.891C>T	c.(889-891)GTC>GTT	p.V297V	NCRNA00181_uc002qse.2_Intron|A1BG_uc002qsf.1_RNA|NCRNA00181_uc002qsg.2_5'Flank	NM_130786	NP_570602	P04217	A1BG_HUMAN	alpha 1B-glycoprotein precursor	297	Ig-like V-type 3.					extracellular region					0		all_cancers(17;3.04e-16)|all_epithelial(17;7.77e-12)|Lung NSC(17;3.25e-05)|Colorectal(82;5.46e-05)|all_lung(17;0.000129)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(17;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0269)		GAATCAGCTCGACCGGCGCGC	0.662000												
ALK	238	broad.mit.edu	37	2	29416759	29416759	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:29416759C>T	uc002rmy.2	-	29	5101	c.4194G>A	c.(4192-4194)CCG>CCA	p.P1398P	ALK_uc010ymo.1_Silent_p.P330P	NM_004304	NP_004295	Q9UM73	ALK_HUMAN	anaplastic lymphoma kinase precursor	1398	Cytoplasmic (Potential).				protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity		NPM1/ALK(632)|EML4/ALK(246)|CLTC/ALK(44)|TPM3/ALK(33)|ATIC/ALK(24)|RANBP2/ALK(16)|TPM4/ALK(12)|TFG/ALK(7)|MSN/ALK(6)|CARS/ALK(5)|VCL/ALK(4)|KIF5B/ALK(4)|PPFIBP1/ALK(3)|SEC31A/ALK(3)|SQSTM1/ALK(2)	haematopoietic_and_lymphoid_tissue(726)|lung(262)|autonomic_ganglia(148)|soft_tissue(61)|breast(4)|kidney(4)|large_intestine(3)|skin(3)|ovary(3)|thyroid(2)|central_nervous_system(1)|pancreas(1)	1218	Acute lymphoblastic leukemia(172;0.155)				Adenosine triphosphate(DB00171)	CATATTCTATCGGCAAAGCGG	0.398000			T|Mis|A	NPM1|TPM3|TFG|TPM4|ATIC|CLTC|MSN|ALO17|CARS|EML4	ALCL|NSCLC|Neuroblastoma	neuroblastoma			Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome			
PCBP1	5093	broad.mit.edu	37	2	70315122	70315122	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:70315122A>T	uc002sgf.2	+	1	538	c.247A>T	c.(247-249)ATC>TTC	p.I83F	ASPRV1_uc002sga.2_5'Flank|uc002sgb.1_5'Flank|uc002sgd.2_5'Flank|uc002sge.1_5'Flank	NM_006196	NP_006187	Q15365	PCBP1_HUMAN	poly(rC) binding protein 1	83					nuclear mRNA splicing, via spliceosome	cytoplasm|nucleoplasm|ribonucleoprotein complex	protein binding|RNA binding|single-stranded DNA binding				0						GGAGGAAGATATCAACAGCTC	0.592000												
DPP10	57628	broad.mit.edu	37	2	116503686	116503686	+	Nonsense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:116503686A>T	uc002tla.1	+	10	1334	c.877A>T	c.(877-879)AAA>TAA	p.K293*	DPP10_uc002tlb.1_Nonsense_Mutation_p.K243*|DPP10_uc002tlc.1_Nonsense_Mutation_p.K289*|DPP10_uc002tle.2_Nonsense_Mutation_p.K297*|DPP10_uc002tlf.1_Nonsense_Mutation_p.K286*	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	293	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						CCCAACAATAAAATTATATGT	0.333000												
LRP1B	53353	broad.mit.edu	37	2	140995737	140995737	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:140995737A>C	uc002tvj.1	-	89	14516	c.13544T>G	c.(13543-13545)ATG>AGG	p.M4515R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4515	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGGGTCTATCATAAAGCCAGG	0.373000										TSP Lung(27;0.18)		
LRP1B	53353	broad.mit.edu	37	2	141093238	141093238	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:141093238A>G	uc002tvj.1	-	78	13034	c.12062T>C	c.(12061-12063)CTC>CCC	p.L4021P		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4021	Extracellular (Potential).|LDL-receptor class B 34.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATTTGTTAAGAGTCTGGTGCA	0.413000										TSP Lung(27;0.18)		
SCN3A	6328	broad.mit.edu	37	2	166003271	166003271	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:166003271T>C	uc002ucx.2	-	12	2141	c.1649A>G	c.(1648-1650)AAA>AGA	p.K550R	SCN3A_uc002ucy.2_Missense_Mutation_p.K550R|SCN3A_uc002ucz.2_Missense_Mutation_p.K550R|SCN3A_uc002uda.1_Missense_Mutation_p.K419R|SCN3A_uc002udb.1_Missense_Mutation_p.K419R	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	550						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	GCAGAATTTTTTGTCACTGGT	0.398000												
HOXD10	3236	broad.mit.edu	37	2	176981726	176981726	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:176981726G>A	uc002ukj.2	+	1	235	c.165G>A	c.(163-165)CCG>CCA	p.P55P		NM_002148	NP_002139	P28358	HXD10_HUMAN	homeobox D10	55						nucleus	sequence-specific DNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GACTGCTCCCGTCTCTGGCCA	0.488000												
TTN	7273	broad.mit.edu	37	2	179413171	179413171	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:179413171C>T	uc010zfg.1	-	288	85702	c.85478G>A	c.(85477-85479)CGT>CAT	p.R28493H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R22188H|TTN_uc010zfi.1_Missense_Mutation_p.R22121H|TTN_uc010zfj.1_Missense_Mutation_p.R21996H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29420							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCCAACTACGGCGACTTGC	0.498000												
TTN	7273	broad.mit.edu	37	2	179424681	179424681	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:179424681T>G	uc010zfg.1	-	275	78698	c.78474A>C	c.(78472-78474)AAA>AAC	p.K26158N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K19853N|TTN_uc010zfi.1_Missense_Mutation_p.K19786N|TTN_uc010zfj.1_Missense_Mutation_p.K19661N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27085							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTGACAGATTTTACTCTGA	0.403000												
TTN	7273	broad.mit.edu	37	2	179439187	179439187	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:179439187A>G	uc010zfg.1	-	275	64192	c.63968T>C	c.(63967-63969)CTT>CCT	p.L21323P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.L15018P|TTN_uc010zfi.1_Missense_Mutation_p.L14951P|TTN_uc010zfj.1_Missense_Mutation_p.L14826P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22250							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCATCTGTAAGTCCACTTGA	0.418000												
TTN	7273	broad.mit.edu	37	2	179600580	179600580	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:179600580A>G	uc010zfg.1	-	47	11085	c.10861T>C	c.(10861-10863)TAT>CAT	p.Y3621H	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.Y282H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4548							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTACAAGAATAAACTCCTCTA	0.413000												
ZDBF2	57683	broad.mit.edu	37	2	207172843	207172843	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr2:207172843T>C	uc002vbp.2	+	5	3841	c.3591T>C	c.(3589-3591)TCT>TCC	p.S1197S		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1197							nucleic acid binding|zinc ion binding			ovary(3)	3						GTTGTGGTTCTGAAGTAAGTT	0.418000												
PROKR2	128674	broad.mit.edu	37	20	5294674	5294674	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr20:5294674G>A	uc010zqw.1	-	1	342	c.342C>T	c.(340-342)TAC>TAT	p.Y114Y	PROKR2_uc010zqx.1_Silent_p.Y114Y|PROKR2_uc010zqy.1_Silent_p.Y114Y|uc002wly.1_5'Flank	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	114	Extracellular (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GCCGTACCACGTAGTAGTCCA	0.582000										HNSCC(71;0.22)		
DNMT3B	1789	broad.mit.edu	37	20	31387101	31387101	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr20:31387101C>T	uc002wyc.2	+	16	2047	c.1726C>T	c.(1726-1728)CGA>TGA	p.R576*	DNMT3B_uc010zty.1_RNA|DNMT3B_uc002wyd.2_Nonsense_Mutation_p.R556*|DNMT3B_uc002wye.2_Nonsense_Mutation_p.R556*|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Nonsense_Mutation_p.R514*|DNMT3B_uc010zua.1_Nonsense_Mutation_p.R480*|DNMT3B_uc002wyf.2_Nonsense_Mutation_p.R568*|DNMT3B_uc002wyg.2_Nonsense_Mutation_p.R275*|DNMT3B_uc010geg.2_5'Flank|DNMT3B_uc010geh.2_5'Flank	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	576					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GCGGCCCATTCGAGTCCTGTC	0.587000												
DLGAP4	22839	broad.mit.edu	37	20	35125434	35125434	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr20:35125434G>T	uc002xff.2	+	8	2410	c.1975G>T	c.(1975-1977)GCC>TCC	p.A659S	DLGAP4_uc010zvp.1_Missense_Mutation_p.A659S|DLGAP4_uc002xfg.2_5'UTR|DLGAP4_uc002xfh.2_Missense_Mutation_p.A120S|DLGAP4_uc002xfi.2_5'UTR|DLGAP4_uc002xfj.2_5'Flank	NM_014902	NP_055717	Q9Y2H0	DLGP4_HUMAN	disks large-associated protein 4 isoform a	659					cell-cell signaling	membrane	protein binding			skin(2)|ovary(1)	3	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				CCCCGAGGCCGCCCCCAAAAG	0.577000												
ZHX3	23051	broad.mit.edu	37	20	39830759	39830759	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr20:39830759C>T	uc002xjs.1	-	3	3176	c.2798G>A	c.(2797-2799)CGT>CAT	p.R933H	ZHX3_uc002xjq.1_Intron|ZHX3_uc002xjr.1_Intron|ZHX3_uc002xjt.1_Missense_Mutation_p.R933H|ZHX3_uc002xju.1_Missense_Mutation_p.R933H|ZHX3_uc010ggg.1_Missense_Mutation_p.R933H	NM_015035	NP_055850	Q9H4I2	ZHX3_HUMAN	zinc fingers and homeoboxes 3	933					negative regulation of transcription, DNA-dependent	cytoplasm|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3		Myeloproliferative disorder(115;0.00425)				CTCAGGGACACGGGGCTCCCA	0.602000												
BCAS1	8537	broad.mit.edu	37	20	52674669	52674669	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr20:52674669C>A	uc002xws.2	-	3	435	c.97G>T	c.(97-99)GTT>TTT	p.V33F	BCAS1_uc002xwt.2_Missense_Mutation_p.V33F|BCAS1_uc010gil.1_Missense_Mutation_p.V33F|BCAS1_uc010zzc.1_Intron	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	33						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			ACCACTGGAACCCCGTTCAGA	0.537000												
MYH9	4627	broad.mit.edu	37	22	36696948	36696948	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr22:36696948C>A	uc003apg.2	-	22	3018	c.2787G>T	c.(2785-2787)GAG>GAT	p.E929D	MYH9_uc003aph.1_Missense_Mutation_p.E793D	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	929	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GCTGGCAGCGCTCCTCCTCCT	0.667000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated			
NAGA	4668	broad.mit.edu	37	22	42458989	42458989	+	Missense_Mutation	SNP	G	G	A	rs138546784		TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr22:42458989G>A	uc003bbx.2	-	8	936	c.799C>T	c.(799-801)CGG>TGG	p.R267W	NAGA_uc003bby.2_Missense_Mutation_p.R267W|NAGA_uc003bbw.3_Missense_Mutation_p.R267W	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	267					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						ATCTGGGCCCGGGATTGCTCT	0.582000												
DAG1	1605	broad.mit.edu	37	3	49568587	49568587	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr3:49568587C>T	uc003cxc.3	+	3	1061	c.643C>T	c.(643-645)CGG>TGG	p.R215W		NM_004393	NP_004384	Q14118	DAG1_HUMAN	dystroglycan 1 preproprotein	215	Required for laminin recognition.				cytoskeletal anchoring at plasma membrane|interspecies interaction between organisms|microtubule anchoring|negative regulation of cell migration|negative regulation of MAPKKK cascade|negative regulation of protein kinase B signaling cascade	basement membrane|contractile ring|cytoplasm|cytoskeleton|dystrophin-associated glycoprotein complex|extracellular space|filopodium|integral to membrane|integral to membrane of membrane fraction|lamellipodium|nucleoplasm	actin binding|alpha-actinin binding|calcium ion binding|laminin-1 binding|receptor activity|structural constituent of muscle|tubulin binding|vinculin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;5.13e-05)|Kidney(197;0.00241)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)		GCACAGGATGCGGAGCTTCTC	0.507000												
LRTM1	57408	broad.mit.edu	37	3	54958847	54958847	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr3:54958847T>C	uc003dhl.2	-	2	537	c.403A>G	c.(403-405)AGC>GGC	p.S135G	CACNA2D3_uc003dhf.2_Intron|CACNA2D3_uc003dhg.1_Intron|CACNA2D3_uc003dhh.1_Intron	NM_020678	NP_065729	Q9HBL6	LRTM1_HUMAN	leucine-rich repeats and transmembrane domains 1	135	LRR 4.|Extracellular (Potential).					integral to membrane					0				KIRC - Kidney renal clear cell carcinoma(284;0.00975)|Kidney(284;0.0112)|OV - Ovarian serous cystadenocarcinoma(275;0.0502)		GGAAGGTGGCTTATGTTGTTT	0.473000												
FLNB	2317	broad.mit.edu	37	3	58109299	58109299	+	Nonsense_Mutation	SNP	C	C	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr3:58109299C>G	uc003djj.2	+	21	3771	c.3606C>G	c.(3604-3606)TAC>TAG	p.Y1202*	FLNB_uc010hne.2_Nonsense_Mutation_p.Y1202*|FLNB_uc003djk.2_Nonsense_Mutation_p.Y1202*|FLNB_uc010hnf.2_Nonsense_Mutation_p.Y1202*|FLNB_uc003djl.2_Nonsense_Mutation_p.Y1033*|FLNB_uc003djm.2_Nonsense_Mutation_p.Y1033*	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1202	Interaction with FBLP1.|Filamin 10.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCGGCATGTACACGTTGACCA	0.577000												
OR5H14	403273	broad.mit.edu	37	3	97868494	97868494	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr3:97868494A>G	uc003dsg.1	+	1	265	c.265A>G	c.(265-267)AGT>GGT	p.S89G		NM_001005514	NP_001005514	A6NHG9	O5H14_HUMAN	olfactory receptor, family 5, subfamily H,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTAGCTAAGAGTAAGATGAT	0.388000												
AMOTL2	51421	broad.mit.edu	37	3	134080535	134080535	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr3:134080535G>A	uc003eqf.2	-	6	1685	c.1568C>T	c.(1567-1569)GCG>GTG	p.A523V	AMOTL2_uc003eqg.1_Missense_Mutation_p.A465V|AMOTL2_uc003eqh.1_Missense_Mutation_p.A465V|AMOTL2_uc003eqe.1_Missense_Mutation_p.A90V	NM_016201	NP_057285	Q9Y2J4	AMOL2_HUMAN	angiomotin like 2	465	Potential.									large_intestine(1)	1						CCGGCCCTGCGCATTGCCCAG	0.682000												
PLD1	5337	broad.mit.edu	37	3	171330103	171330103	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr3:171330103G>A	uc003fhs.2	-	25	2964	c.2848C>T	c.(2848-2850)CGG>TGG	p.R950W	PLD1_uc003fht.2_Missense_Mutation_p.R912W|PLD1_uc003fhu.3_Missense_Mutation_p.R244W	NM_002662	NP_002653	Q13393	PLD1_HUMAN	phospholipase D1 isoform a	950					cell communication|chemotaxis|Ras protein signal transduction	endoplasmic reticulum membrane|Golgi membrane|late endosome membrane|perinuclear region of cytoplasm	NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			ovary(2)|lung(1)	3	all_cancers(22;4.53e-19)|Ovarian(172;0.00197)|Breast(254;0.186)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)		Choline(DB00122)	CGGGCAAACCGGCCAGCTTGG	0.542000												
GAK	2580	broad.mit.edu	37	4	861053	861053	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:861053C>T	uc003gbm.3	-	21	2762	c.2563G>A	c.(2563-2565)GGG>AGG	p.G855R	GAK_uc003gbn.3_Missense_Mutation_p.G776R|GAK_uc010ibk.1_Missense_Mutation_p.G749R|GAK_uc010ibi.2_Missense_Mutation_p.G36R|GAK_uc010ibj.2_RNA|GAK_uc003gbl.3_Missense_Mutation_p.G719R	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	855					cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		TGCACCAGCCCTGCTGCCAGG	0.662000												
TADA2B	93624	broad.mit.edu	37	4	7056285	7056285	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:7056285G>A	uc003gjw.3	+	2	918	c.767G>A	c.(766-768)CGC>CAC	p.R256H	TADA2B_uc010idi.2_Missense_Mutation_p.R181H	NM_152293	NP_689506	Q86TJ2	TAD2B_HUMAN	transcriptional adaptor 2 (ADA2 homolog,	256					regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|zinc ion binding				0						AAGGAGCTGCGCCTGAAGCTG	0.522000												
PCDH7	5099	broad.mit.edu	37	4	30724803	30724803	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:30724803G>A	uc003gsk.1	+	1	2767	c.1759G>A	c.(1759-1761)GAT>AAT	p.D587N	PCDH7_uc011bxw.1_Missense_Mutation_p.D540N|PCDH7_uc011bxx.1_Missense_Mutation_p.D587N	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	587	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						CATCGATCCCGATTCTGGGGA	0.572000												
GRXCR1	389207	broad.mit.edu	37	4	42895621	42895621	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:42895621T>C	uc003gwt.2	+	1	338	c.338T>C	c.(337-339)GTG>GCG	p.V113A		NM_001080476	NP_001073945	A8MXD5	GRCR1_HUMAN	glutaredoxin, cysteine rich 1	113					cell redox homeostasis|inner ear receptor stereocilium organization|sensory perception of sound|vestibular receptor cell development	kinocilium|stereocilium	electron carrier activity|protein disulfide oxidoreductase activity			ovary(1)	1						AAATACAAAGTGAGTGCTGGC	0.428000												
CXCL9	4283	broad.mit.edu	37	4	76925962	76925962	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:76925962C>A	uc003hjh.1	-	3	315	c.276G>T	c.(274-276)CAG>CAT	p.Q92H		NM_002416	NP_002407	Q07325	CXCL9_HUMAN	small inducible cytokine B9 precursor	92					cell-cell signaling|cellular defense response|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space	chemokine activity			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TTTCACCAACCTGTTTCTCCC	0.328000												
GRID2	2895	broad.mit.edu	37	4	94137982	94137982	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:94137982A>C	uc011cdt.1	+	6	1141	c.883A>C	c.(883-885)AGT>CGT	p.S295R	GRID2_uc010ikx.2_Missense_Mutation_p.S295R|GRID2_uc011cdu.1_Missense_Mutation_p.S200R|GRID2_uc010ikz.1_5'UTR	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	295	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	CCAGAACATAAGTCAGCGGTG	0.403000												
C4orf31	79625	broad.mit.edu	37	4	121961132	121961132	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:121961132T>A	uc003idq.1	-	3	793	c.266A>T	c.(265-267)AAG>ATG	p.K89M		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	89											0						GAGGCTCAGCTTCCACTCCAA	0.512000												
EDNRA	1909	broad.mit.edu	37	4	148407147	148407147	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:148407147T>G	uc003iky.2	+	2	1006	c.314T>G	c.(313-315)ATT>AGT	p.I105S	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Missense_Mutation_p.I105S|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Missense_Mutation_p.I105S	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	105	Cytoplasmic (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	CTCAGGATCATTTACCAGAAC	0.418000												
DCHS2	54798	broad.mit.edu	37	4	155254538	155254538	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:155254538T>C	uc003inw.2	-	9	1325	c.1325A>G	c.(1324-1326)GAG>GGG	p.E442G	DCHS2_uc003inx.2_Missense_Mutation_p.E941G	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	442	Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		GGGCTGCGTCTCGTGATCCAG	0.587000												
GLRB	2743	broad.mit.edu	37	4	158041808	158041808	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:158041808T>G	uc003ipj.2	+	3	425	c.223T>G	c.(223-225)TTC>GTC	p.F75V		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	75	Extracellular (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	AAGACCAAACTTCAAAGGTTT	0.343000												
RAPGEF2	9693	broad.mit.edu	37	4	160251157	160251157	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:160251157A>T	uc003iqg.3	+	6	1124	c.814A>T	c.(814-816)ATC>TTC	p.I272F		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	272	N-terminal Ras-GEF.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		ACACATTGTCATCAAGGTAGG	0.393000												
WDR17	116966	broad.mit.edu	37	4	177052829	177052829	+	Missense_Mutation	SNP	G	G	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:177052829G>C	uc003iuj.2	+	8	1266	c.1110G>C	c.(1108-1110)TTG>TTC	p.L370F	WDR17_uc003iuk.2_Missense_Mutation_p.L346F|WDR17_uc003ium.3_Missense_Mutation_p.L346F|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	370										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		GTTGTTTCTTGGATGGTGGAG	0.383000												
AGA	175	broad.mit.edu	37	4	178355641	178355641	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:178355641C>T	uc003iuu.1	-	7	763	c.701G>A	c.(700-702)CGT>CAT	p.R234H	AGA_uc010irt.1_RNA|AGA_uc003iuv.1_Missense_Mutation_p.V113M|AGA_uc003iuw.2_Intron	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	234					asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		GTCTCCTACACGGCTTTGAGA	0.478000												
ING2	3622	broad.mit.edu	37	4	184431507	184431507	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr4:184431507T>C	uc003ivs.1	+	2	374	c.245T>C	c.(244-246)CTA>CCA	p.L82P	ING2_uc011ckk.1_Missense_Mutation_p.L42P	NM_001564	NP_001555	Q9H160	ING2_HUMAN	inhibitor of growth family, member 2	82	Potential.				chromatin modification|positive regulation of transcription, DNA-dependent|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of growth|signal transduction|transcription, DNA-dependent	CCAAT-binding factor complex|Sin3 complex	chromatin binding|DNA binding|protein complex binding|zinc ion binding			ovary(1)	1		all_lung(41;5.16e-14)|Lung NSC(41;1.33e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|all_hematologic(60;0.0207)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.15e-26)|Epithelial(43;2.98e-22)|OV - Ovarian serous cystadenocarcinoma(60;7.64e-10)|GBM - Glioblastoma multiforme(59;4.22e-06)|Colorectal(24;5.87e-06)|STAD - Stomach adenocarcinoma(60;2.09e-05)|COAD - Colon adenocarcinoma(29;5.15e-05)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		AAGAAACGTCTACAGCAGCTT	0.333000												
PLEKHG4B	153478	broad.mit.edu	37	5	156286	156286	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:156286C>T	uc003jak.2	+	8	1291	c.1241C>T	c.(1240-1242)GCG>GTG	p.A414V		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	414					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		ACCGTCCTGGCGCGGCTGAGG	0.617000												
ADCY2	108	broad.mit.edu	37	5	7789859	7789859	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:7789859C>T	uc003jdz.1	+	20	2641	c.2574C>T	c.(2572-2574)AAC>AAT	p.N858N	ADCY2_uc011cmo.1_Silent_p.N678N|ADCY2_uc010itm.1_Silent_p.N54N	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	858	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding	p.N858N(1)		ovary(5)|pancreas(1)|skin(1)	7						TGCTGGAGAACGTGCTTCCCG	0.557000												
ADCY2	108	broad.mit.edu	37	5	7820795	7820795	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:7820795A>G	uc003jdz.1	+	24	3183	c.3116A>G	c.(3115-3117)AAA>AGA	p.K1039R	ADCY2_uc011cmo.1_Missense_Mutation_p.K859R|ADCY2_uc010itm.1_Missense_Mutation_p.K235R	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	1039	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GTCCTGGACAAAATACAGGTA	0.443000												
CTNND2	1501	broad.mit.edu	37	5	11022936	11022936	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:11022936G>A	uc003jfa.1	-	17	3089	c.2944C>T	c.(2944-2946)CGG>TGG	p.R982W	CTNND2_uc010itt.2_Missense_Mutation_p.R891W|CTNND2_uc011cmy.1_Missense_Mutation_p.R645W|CTNND2_uc011cmz.1_Missense_Mutation_p.R549W|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.R574W	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	982	ARM 9.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						CCGGCATCCCGTAAGGCCTTG	0.507000												
JMY	133746	broad.mit.edu	37	5	78533384	78533384	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:78533384T>A	uc003kfx.3	+	1	1431	c.911T>A	c.(910-912)ATC>AAC	p.I304N		NM_152405	NP_689618	Q8N9B5	JMY_HUMAN	junction-mediating and regulatory protein	304					'de novo' actin filament nucleation|actin polymerization-dependent cell motility|Arp2/3 complex-mediated actin nucleation|cell cycle arrest|DNA repair|induction of apoptosis|positive regulation of sequence-specific DNA binding transcription factor activity|regulation of transcription from RNA polymerase II promoter	cell leading edge|cytoplasm|cytoskeleton|nucleus	actin binding|transcription coactivator activity				0		all_lung(232;0.00051)|Lung NSC(167;0.00131)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;4.45e-45)|Epithelial(54;5.85e-40)|all cancers(79;2.89e-35)		GGCTGGAAGATCCTCTCCCAG	0.607000												
VCAN	1462	broad.mit.edu	37	5	82836238	82836238	+	Silent	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:82836238A>G	uc003kii.3	+	8	7772	c.7416A>G	c.(7414-7416)CCA>CCG	p.P2472P	VCAN_uc003kij.3_Silent_p.P1485P|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Silent_p.P1136P	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2472	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CTGAGGTGCCAAGCGCTAAAG	0.468000												
HAPLN1	1404	broad.mit.edu	37	5	82937440	82937440	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:82937440C>T	uc003kim.2	-	4	1011	c.940G>A	c.(940-942)GTC>ATC	p.V314I	HAPLN1_uc003kin.2_Missense_Mutation_p.V314I	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	314	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		GGGTAGCGGACGCTGCCATCC	0.537000												
SLCO4C1	353189	broad.mit.edu	37	5	101593707	101593707	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:101593707A>C	uc003knm.2	-	7	1500	c.1213T>G	c.(1213-1215)TTA>GTA	p.L405V		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	405	Extracellular (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		AATTTAGGTAAAAATGTAGCA	0.294000												
CAMK4	814	broad.mit.edu	37	5	110712565	110712565	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:110712565T>G	uc011cvj.1	+	5	410	c.311T>G	c.(310-312)CTT>CGT	p.L104R	CAMK4_uc003kpf.2_Missense_Mutation_p.L104R|CAMK4_uc010jbv.2_Intron	NM_001744	NP_001735	Q16566	KCC4_HUMAN	calcium/calmodulin-dependent protein kinase IV	104	Protein kinase.				activation of phospholipase C activity|nerve growth factor receptor signaling pathway|synaptic transmission	cytosol|nucleoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(3)|lung(2)	5		all_cancers(142;1.49e-05)|all_epithelial(76;1.82e-07)|Prostate(80;0.00964)|all_lung(232;0.0181)|Lung NSC(167;0.0298)|Ovarian(225;0.0446)|Colorectal(57;0.0478)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;3.79e-08)|Epithelial(69;5.29e-08)|all cancers(49;1.1e-05)|COAD - Colon adenocarcinoma(37;0.109)		TAGATAAAACTTAAAGAGATA	0.343000												
MATR3	9782	broad.mit.edu	37	5	138658622	138658622	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:138658622G>A	uc003ldu.2	+	15	2541	c.2114G>A	c.(2113-2115)AGT>AAT	p.S705N	MATR3_uc010jfb.2_Missense_Mutation_p.S705N|MATR3_uc003ldt.2_Missense_Mutation_p.S367N|MATR3_uc003ldw.2_Missense_Mutation_p.S705N|MATR3_uc003ldx.2_Missense_Mutation_p.S705N|MATR3_uc010jfc.2_Missense_Mutation_p.S705N|MATR3_uc003ldy.2_Missense_Mutation_p.S382N|MATR3_uc011czb.1_Missense_Mutation_p.S417N|MATR3_uc003ldz.2_Missense_Mutation_p.S705N|MATR3_uc003lea.2_Missense_Mutation_p.S705N|MATR3_uc003leb.2_Missense_Mutation_p.S367N|MATR3_uc003lec.2_Missense_Mutation_p.S382N	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	705						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			AAAGATGGAAGTGCTTCAGCA	0.363000												
PCDHA13	56136	broad.mit.edu	37	5	140263637	140263637	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:140263637G>A	uc003lif.2	+	1	1784	c.1784G>A	c.(1783-1785)CGC>CAC	p.R595H	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.R595H|PCDHA13_uc003lid.2_Missense_Mutation_p.R595H	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	595	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGAAGGTGCGCGCGGTGGAC	0.706000												
PCDHB3	56132	broad.mit.edu	37	5	140480968	140480968	+	Silent	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:140480968G>T	uc003lio.2	+	1	735	c.735G>T	c.(733-735)CCG>CCT	p.P245P	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	245	Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTGCACAGCCGCTCTATGAGG	0.498000												
PCDHB11	56125	broad.mit.edu	37	5	140579789	140579789	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:140579789G>A	uc003liy.2	+	1	442	c.442G>A	c.(442-444)GTT>ATT	p.V148I	PCDHB11_uc011daj.1_Intron	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	148	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAACAGTCCCGTTGGTGCTGT	0.398000												
JAKMIP2	9832	broad.mit.edu	37	5	147016608	147016608	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:147016608G>T	uc003loq.1	-	11	1916	c.1534C>A	c.(1534-1536)CAA>AAA	p.Q512K	JAKMIP2_uc011dbx.1_Missense_Mutation_p.Q470K|JAKMIP2_uc003lor.1_Missense_Mutation_p.Q512K|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Missense_Mutation_p.Q512K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	512	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGCTGTTCTTGAGCCTGGTGA	0.433000												
RANBP17	64901	broad.mit.edu	37	5	170722912	170722912	+	Missense_Mutation	SNP	A	A	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:170722912A>C	uc003mba.2	+	27	3080	c.3064A>C	c.(3064-3066)AGT>CGT	p.S1022R	RANBP17_uc003mbb.2_Missense_Mutation_p.S347R|RANBP17_uc010jjs.2_RNA	NM_022897	NP_075048	Q9H2T7	RBP17_HUMAN	RAN binding protein 17	1022					mRNA transport|protein import into nucleus|transmembrane transport	cytoplasm|nuclear pore	GTP binding|protein transporter activity			ovary(2)|central_nervous_system(1)	3	Renal(175;0.000159)|Lung NSC(126;0.00751)|all_lung(126;0.0123)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			ACTGAGAGCAAGTTTGATAAA	0.532000			T	TRD@	ALL							
BTN1A1	696	broad.mit.edu	37	6	26508948	26508948	+	Missense_Mutation	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr6:26508948G>T	uc003nif.3	+	7	1147	c.1127G>T	c.(1126-1128)AGG>ATG	p.R376M		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	376	B30.2/SPRY.|Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						GGCGTGTGTAGGGAGAATGTG	0.552000												
RARS2	57038	broad.mit.edu	37	6	88224725	88224725	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr6:88224725C>T	uc003pme.2	-	19	1660	c.1600G>A	c.(1600-1602)GTG>ATG	p.V534M	RARS2_uc003pmb.2_Missense_Mutation_p.V359M|RARS2_uc003pmc.2_Missense_Mutation_p.V359M|RARS2_uc003pmd.2_Missense_Mutation_p.V146M|RARS2_uc003pmf.2_RNA	NM_020320	NP_064716	Q5T160	SYRM_HUMAN	arginyl-tRNA synthetase 2, mitochondrial	534					arginyl-tRNA aminoacylation	mitochondrial matrix	arginine-tRNA ligase activity|ATP binding|protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0456)		TTGTGTGCCACAGCTGCAAGA	0.393000												
BEND3	57673	broad.mit.edu	37	6	107390253	107390253	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr6:107390253C>T	uc003prs.2	-	5	2792	c.2142G>A	c.(2140-2142)CCG>CCA	p.P714P		NM_001080450	NP_001073919	Q5T5X7	BEND3_HUMAN	BEN domain containing 3	714										ovary(3)	3						GAGAAGGCACCGGGAAGTCAG	0.647000												
PLG	5340	broad.mit.edu	37	6	161143543	161143543	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr6:161143543T>C	uc003qtm.3	+	10	1263	c.1200T>C	c.(1198-1200)TCT>TCC	p.S400S		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	400	Kringle 4.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	AGTGTCAGTCTTGGTCATCTA	0.517000												
FOXK1	221937	broad.mit.edu	37	7	4800738	4800738	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:4800738G>A	uc003snc.1	+	8	1750	c.1740G>A	c.(1738-1740)GCG>GCA	p.A580A	FOXK1_uc003sna.1_Silent_p.A417A	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	580					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CAATCCCCGCGGCTGGTGGAG	0.652000												
RNF216	54476	broad.mit.edu	37	7	5780920	5780920	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:5780920C>T	uc003soy.1	-	4	747	c.557G>A	c.(556-558)CGT>CAT	p.R186H	RNF216_uc010ksz.1_Translation_Start_Site|RNF216_uc010kta.1_Intron|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.R243H	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	186					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		TGTTATTTCACGGGGCTGTTG	0.512000												
EIF2AK1	27102	broad.mit.edu	37	7	6082613	6082613	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:6082613C>T	uc003spp.2	-	8	888	c.742G>A	c.(742-744)GCC>ACC	p.A248T	EIF2AK1_uc003spq.2_Missense_Mutation_p.A247T|EIF2AK1_uc011jwm.1_Missense_Mutation_p.A124T|EIF2AK1_uc003spr.1_Missense_Mutation_p.A40T	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	248	Protein kinase.				negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		AACTCAATGGCAGCTCTGTCT	0.408000												
ZNF12	7559	broad.mit.edu	37	7	6731622	6731622	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:6731622T>G	uc003sqt.1	-	5	1505	c.951A>C	c.(949-951)AGA>AGC	p.R317S	ZNF12_uc011jxa.1_Missense_Mutation_p.R155S|ZNF12_uc003sqs.1_Missense_Mutation_p.R279S	NM_016265	NP_057349	P17014	ZNF12_HUMAN	zinc finger protein 12 isoform a	317	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Ovarian(82;0.0776)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0231)		CTGTGTGTGTTCTCTGATGCA	0.438000												
ZPBP	11055	broad.mit.edu	37	7	50057879	50057879	+	Missense_Mutation	SNP	C	C	A	rs147255783		TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:50057879C>A	uc003tou.2	-	6	810	c.740G>T	c.(739-741)CGA>CTA	p.R247L	ZPBP_uc011kci.1_Missense_Mutation_p.R173L|ZPBP_uc010kyw.2_Missense_Mutation_p.R246L	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	247					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					GTCTGTACATCGCTTGGGTCC	0.313000												
NPTX2	4885	broad.mit.edu	37	7	98257796	98257796	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:98257796G>A	uc003upl.2	+	5	1328	c.1151G>A	c.(1150-1152)CGC>CAC	p.R384H		NM_002523	NP_002514	P47972	NPTX2_HUMAN	neuronal pentraxin II precursor	384	Pentaxin.				synaptic transmission	extracellular region	metal ion binding|sugar binding			central_nervous_system(2)|skin(1)	3	all_cancers(62;2.28e-09)|all_epithelial(64;4.86e-10)|Esophageal squamous(72;0.00918)|Lung NSC(181;0.0128)|all_lung(186;0.0142)		STAD - Stomach adenocarcinoma(171;0.215)			CGCGTCCTTCGCGCACAAGAA	0.567000												
AGK	55750	broad.mit.edu	37	7	141336807	141336807	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:141336807G>A	uc003vwi.2	+	11	887	c.716G>A	c.(715-717)AGC>AAC	p.S239N	AGK_uc011krg.1_RNA	NM_018238	NP_060708	Q53H12	AGK_HUMAN	acylglycerol kinase precursor	239					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	mitochondrial membrane	acylglycerol kinase activity|ATP binding|diacylglycerol kinase activity|NAD+ kinase activity			ovary(1)|breast(1)	2	Melanoma(164;0.0171)					CACTTTTTCAGCACTCTTAAG	0.318000												
CSMD1	64478	broad.mit.edu	37	8	2832041	2832041	+	Missense_Mutation	SNP	A	A	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:2832041A>T	uc011kwk.1	-	56	9065	c.8675T>A	c.(8674-8676)CTC>CAC	p.L2892H	CSMD1_uc011kwj.1_Missense_Mutation_p.L2221H|CSMD1_uc010lrg.2_Missense_Mutation_p.L902H	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2892	Sushi 21.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GTTGCCTATGAGGCTCTCGCT	0.602000												
PREX2	80243	broad.mit.edu	37	8	68995528	68995528	+	Silent	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:68995528T>A	uc003xxv.1	+	18	1959	c.1932T>A	c.(1930-1932)GTT>GTA	p.V644V	PREX2_uc003xxu.1_Silent_p.V644V|PREX2_uc011lez.1_Silent_p.V579V	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	644	PDZ 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GTGACCTAGTTTTTATGAGAC	0.348000												
C8orf34	116328	broad.mit.edu	37	8	69445301	69445301	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:69445301A>G	uc010lyz.2	+	7	813	c.764A>G	c.(763-765)GAT>GGT	p.D255G	C8orf34_uc010lyy.1_Missense_Mutation_p.D255G|C8orf34_uc003xyb.2_Missense_Mutation_p.D230G	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	255					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			CTCTCTCAAGATTCTTTTGAG	0.368000												
CRISPLD1	83690	broad.mit.edu	37	8	75937820	75937820	+	Missense_Mutation	SNP	T	T	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:75937820T>A	uc003yan.2	+	13	1659	c.1284T>A	c.(1282-1284)CAT>CAA	p.H428Q	CRISPLD1_uc011lfk.1_Missense_Mutation_p.H240Q|CRISPLD1_uc011lfl.1_Missense_Mutation_p.H240Q	NM_031461	NP_113649	Q9H336	CRLD1_HUMAN	cysteine-rich secretory protein LCCL domain	428	LCCL 2.					extracellular region				ovary(1)|central_nervous_system(1)	2	Breast(64;0.0799)		Epithelial(68;0.155)|BRCA - Breast invasive adenocarcinoma(89;0.161)			CAAATCCACATTATGCTCGTG	0.254000												
RGS22	26166	broad.mit.edu	37	8	100999827	100999827	+	Silent	SNP	G	G	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:100999827G>T	uc003yjb.1	-	21	3234	c.3039C>A	c.(3037-3039)ATC>ATA	p.I1013I	RGS22_uc003yja.1_Silent_p.I832I|RGS22_uc003yjc.1_Silent_p.I1001I	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	1013					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AAGATGAAGAGATCCACTTAC	0.353000												
DCAF13	25879	broad.mit.edu	37	8	104427572	104427572	+	Silent	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:104427572T>C	uc003yln.2	+	1	631	c.354T>C	c.(352-354)ACT>ACC	p.T118T	SLC25A32_uc003yll.2_5'Flank|SLC25A32_uc011lhr.1_5'Flank|DCAF13_uc003ylm.1_5'UTR|DCAF13_uc003ylo.2_5'UTR	NM_015420	NP_056235	Q9NV06	DCA13_HUMAN	WD repeats and SOF1 domain containing	Error:Variant_position_missing_in_Q9NV06_after_alignment					rRNA processing	CUL4 RING ubiquitin ligase complex|nucleolus|ribonucleoprotein complex				breast(1)	1						GTCACGTGACTGGAAGTAGTC	0.637000												
CSMD3	114788	broad.mit.edu	37	8	113421186	113421186	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:113421186T>C	uc003ynu.2	-	33	5630	c.5471A>G	c.(5470-5472)CAA>CGA	p.Q1824R	CSMD3_uc003yns.2_Intron|CSMD3_uc003ynt.2_Missense_Mutation_p.Q1784R|CSMD3_uc011lhx.1_Missense_Mutation_p.Q1720R	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1824	Extracellular (Potential).|CUB 10.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAGAGAAGATTGCTGAGTTGG	0.428000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)		
CSMD3	114788	broad.mit.edu	37	8	113599416	113599416	+	Missense_Mutation	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr8:113599416G>A	uc003ynu.2	-	23	3923	c.3764C>T	c.(3763-3765)CCA>CTA	p.P1255L	CSMD3_uc003yns.2_Missense_Mutation_p.P527L|CSMD3_uc003ynt.2_Missense_Mutation_p.P1215L|CSMD3_uc011lhx.1_Missense_Mutation_p.P1151L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1255	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGGATAATTTGGAGACAGCAA	0.343000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)		
TLE4	7091	broad.mit.edu	37	9	82323081	82323081	+	Silent	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr9:82323081C>A	uc004ald.2	+	13	1909	c.1060C>A	c.(1060-1062)CGA>AGA	p.R354R	TLE4_uc004alc.2_Silent_p.R329R|TLE4_uc010mpr.2_Silent_p.R208R|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Silent_p.R297R|TLE4_uc010mps.2_Silent_p.R253R|TLE4_uc004alf.2_Silent_p.R268R	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						CCCTACTCCACGAACTGATGC	0.443000												
OR13F1	138805	broad.mit.edu	37	9	107267259	107267259	+	Nonsense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr9:107267259C>A	uc011lvm.1	+	1	716	c.716C>A	c.(715-717)TCA>TAA	p.S239*		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						AAAGCCTTTTCAACGTGCACA	0.478000												
DBH	1621	broad.mit.edu	37	9	136507403	136507403	+	Silent	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr9:136507403C>T	uc004cel.2	+	3	570	c.561C>T	c.(559-561)GGC>GGT	p.G187G		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	187	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	ACGGCTCGGGCCTGCAGATGG	0.632000												
KIAA0649	9858	broad.mit.edu	37	9	138378506	138378506	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr9:138378506C>T	uc004cfr.1	+	4	2699	c.2150C>T	c.(2149-2151)GCG>GTG	p.A717V		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	717						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		CCCAGGGCTGCGTGCAGGAAG	0.612000												
ABCA2	20	broad.mit.edu	37	9	139911417	139911417	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr9:139911417C>T	uc011mem.1	-	18	2858	c.2710G>A	c.(2710-2712)GTG>ATG	p.V904M	ABCA2_uc011mel.1_Missense_Mutation_p.V905M|ABCA2_uc004ckl.1_Missense_Mutation_p.V835M|ABCA2_uc004ckm.1_Missense_Mutation_p.V935M|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	904	Helical; (Potential).				cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		CCATAGACCACGGCGTCCACC	0.652000												
ARSD	414	broad.mit.edu	37	X	2826865	2826866	+	Missense_Mutation	DNP	GC	GC	AT			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:2826865_2826866GC>AT	uc004cqy.2	-	9	1392_1393	c.1316_1317GC>AT	c.(1315-1317)AGC>AAT	p.S439N	ARSD_uc004cqz.1_Intron	NM_001669	NP_001660	P51689	ARSD_HUMAN	arylsulfatase D isoform a precursor	439						lysosome	arylsulfatase activity|metal ion binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				AGGGTACCAGGCTGTGGCCATC	0.535000												
DMD	1756	broad.mit.edu	37	X	31515045	31515045	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:31515045T>C	uc004dda.1	-	57	8651	c.8407A>G	c.(8407-8409)AGT>GGT	p.S2803G	DMD_uc004dcq.1_Missense_Mutation_p.S74G|DMD_uc004dcr.1_Missense_Mutation_p.S343G|DMD_uc004dcs.1_Missense_Mutation_p.S343G|DMD_uc004dct.1_Missense_Mutation_p.S343G|DMD_uc004dcu.1_Missense_Mutation_p.S343G|DMD_uc004dcv.1_Missense_Mutation_p.S343G|DMD_uc004dcw.2_Missense_Mutation_p.S1459G|DMD_uc004dcx.2_Missense_Mutation_p.S1462G|DMD_uc004dcz.2_Missense_Mutation_p.S2680G|DMD_uc004dcy.1_Missense_Mutation_p.S2799G|DMD_uc004ddb.1_Missense_Mutation_p.S2795G	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	2803					muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGGTCAGAACTGGCTTCCAAA	0.438000												
FAM47A	158724	broad.mit.edu	37	X	34149532	34149532	+	Silent	SNP	G	G	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:34149532G>A	uc004ddg.2	-	1	897	c.864C>T	c.(862-864)GAC>GAT	p.D288D		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	288										ovary(4)|central_nervous_system(1)	5						CTGTGGGTTCGTCAGTTGTCT	0.577000												
ALAS2	212	broad.mit.edu	37	X	55052271	55052271	+	Missense_Mutation	SNP	C	C	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:55052271C>T	uc004dua.3	-	2	301	c.163G>A	c.(163-165)GCA>ACA	p.A55T	ALAS2_uc004dub.3_Missense_Mutation_p.A79T|ALAS2_uc004dud.3_Missense_Mutation_p.A55T	NM_000032	NP_000023	P22557	HEM0_HUMAN	5-aminolevulinate synthase 2 isoform a	55					cellular iron ion homeostasis|erythrocyte differentiation|heme biosynthetic process|hemoglobin biosynthetic process|oxygen homeostasis|response to hypoxia	mitochondrial inner membrane|mitochondrial matrix	5-aminolevulinate synthase activity|coenzyme binding|glycine binding|protein binding|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			ovary(1)	1					Glycine(DB00145)	GCCTTTGTTGCCTTAAGGTGG	0.493000												
RAB40A	142684	broad.mit.edu	37	X	102755054	102755054	+	Missense_Mutation	SNP	T	T	C			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:102755054T>C	uc004ekk.2	-	3	973	c.631A>G	c.(631-633)AAG>GAG	p.K211E		NM_080879	NP_543155	Q8WXH6	RB40A_HUMAN	RAB40A, member RAS oncogene family	211	SOCS box.				protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0						AGCGGGAGCTTGTCCACCAGA	0.587000												
TRPC5	7224	broad.mit.edu	37	X	111155645	111155645	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:111155645T>G	uc004epl.1	-	3	1693	c.774A>C	c.(772-774)CAA>CAC	p.Q258H	TRPC5_uc004epm.1_Missense_Mutation_p.Q258H	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	258	Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						AGCTCCGAGCTTGGTCCAGCA	0.542000												
SLITRK4	139065	broad.mit.edu	37	X	142716880	142716880	+	Missense_Mutation	SNP	C	C	A			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:142716880C>A	uc004fbx.2	-	2	2421	c.2045G>T	c.(2044-2046)AGC>ATC	p.S682I	SLITRK4_uc004fby.2_Missense_Mutation_p.S682I	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	682	Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					AGCTTCTGTGCTCAGTCCATC	0.473000												
FMR1NB	158521	broad.mit.edu	37	X	147088343	147088343	+	Missense_Mutation	SNP	T	T	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:147088343T>G	uc004fcm.2	+	3	593	c.519T>G	c.(517-519)TGT>TGG	p.C173W		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	173	P-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCTTCAAATGTTTTGCTCCAT	0.348000												
CNGA2	1260	broad.mit.edu	37	X	150912264	150912264	+	Missense_Mutation	SNP	A	A	G			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chrX:150912264A>G	uc004fey.1	+	7	1513	c.1289A>G	c.(1288-1290)AAG>AGG	p.K430R		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	430	Extracellular (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GAAATTCTCAAGAATCTGCCA	0.498000												
AKAP9	10142	broad.mit.edu	37	7	91570197	91570198	+	Translation_Start_Site	INS	-	-	GGC			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:91570197_91570198insGGC	uc003ulg.2	+	1	9_10	c.-216_-215insGGC	c.(-218--213)GATGGC>GATGGCGGC		AKAP9_uc003uld.3_Translation_Start_Site|AKAP9_uc003ule.2_Translation_Start_Site|AKAP9_uc003ulf.2_Translation_Start_Site	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2						G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GAGACGAAGATggcggcggcgg	0.629			T	BRAF	papillary thyroid							
SLC9A3	6550	broad.mit.edu	37	5	483432	483432	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr5:483432delC	uc003jbe.2	-	6	1210	c.1098delG	c.(1096-1098)TGGfs	p.W366fs	SLC9A3_uc011clx.1_Frame_Shift_Del_p.W366fs	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	366	Cytoplasmic (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			AGGCCGTGTTCCAGGTCCAGA	0.647												
TRPV5	56302	broad.mit.edu	37	7	142630549	142630549	+	Frame_Shift_Del	DEL	C	C	-	rs149773774	byFrequency	TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr7:142630548_142630548AC>A	uc003wby.1	-	0	273	c.9_9GT>T	c.(7-9)ggtfs	p.G3fs	TRPV5_uc003wbz.3_Frame_Shift_Del_p.G3fs	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	Homo sapiens transient receptor potential cation channel, subfamily V, member 5 (TRPV5), mRNA.	3					protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			NS(1)|breast(2)|central_nervous_system(3)|endometrium(2)|kidney(1)|large_intestine(14)|lung(32)|ovary(3)|skin(4)|upper_aerodigestive_tract(2)|urinary_tract(3)	67	Melanoma(164;0.059)					TAGGTAGAAAACCCCCCATGT	0.512												
BZRAP1	9256	broad.mit.edu	37	17	56386384	56386385	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BR-8080-01A-11D-2340-08	TCGA-BR-8080-10A-01D-2340-08								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9e4058de-9986-4dfe-b5f8-2503d0346e2e	b3aac2f9-d2de-4398-a22c-4b4a2509e824	g.chr17:56386383_56386384C>CT	uc002ivx.4	-	21	5120_5121	c.4249_4250G>AG	c.(4249-4251)agcfs	p.S1417fs	BZRAP1_uc002ivw.3_5'Flank|BZRAP1_uc010dcs.3_Frame_Shift_Ins_p.S1357fs|BZRAP1_uc010wnt.2_Frame_Shift_Ins_p.S1417fs	NM_004758	NP_004749	O95153	RIMB1_HUMAN	Homo sapiens benzodiazapine receptor (peripheral) associated protein 1 (BZRAP1), transcript variant 1, mRNA.	1417						mitochondrion	benzodiazepine receptor binding			cervix(1)|endometrium(8)|haematopoietic_and_lymphoid_tissue(1)|kidney(4)|large_intestine(11)|liver(2)|lung(16)|ovary(1)|prostate(1)|skin(6)|upper_aerodigestive_tract(2)|urinary_tract(1)	54	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCGCCTGCGGCTTGGGGGCTTC	0.653												
