Extract Name	Hybridization Name	Data File	Comment [TCGA Archive Name]	Comment [TCGA Data Level]	Comment [TCGA Include for Analysis]	Protocol REF	Protocol REF	Data Transformation Name	Derived Data File	Comment [TCGA Data Type]	Comment [TCGA Data Level]	Comment [TCGA File Type]	Comment [TCGA Archive Name]	Comment [TCGA Include for Analysis]
TCGA-A6-5659-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E01_1347428	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E01_1347428.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.89.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-2684-01C-08D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B03_1347356	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B03_1347356.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.76.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-6781-01B-06D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B07_1347440	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B07_1347440.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.157.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-6781-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B01_1347442	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B01_1347442.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.157.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-2672-01B-03D-2297-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A03_1147940.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.29.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-5665-01B-03D-2297-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A08_1147852.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.89.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-5661-01B-05D-2297-01	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002	CHILE_p_TCGASNP_230_231_FFPE_N_GenomeWideSNP_6_A02_1148002.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.89.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-3809-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E03_1347410	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E03_1347410.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.41.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-5659-01B-04D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A07_1347448	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A07_1347448.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.89.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-6650-01B-02D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D11_1347352	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D11_1347352.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.123.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-3809-01B-04D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A11_1347320	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A11_1347320.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.41.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-3810-01B-04D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E06_1347418	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_E06_1347418.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.41.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-6780-01B-04D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D07_1347432	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D07_1347432.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.138.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-2684-10A-01D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A09_1347444	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_A09_1347444.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.76.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-2677-01B-02D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B05_1347404	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_B05_1347404.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.28.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
TCGA-A6-5656-01B-02D-A274-01	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D05_1347368	BEDEW_p_TCGA_FFPE_7_13_N_GenomeWideSNP_6_D05_1347368.hg19.seg.txt	broad.mit.edu_COAD.Genome_Wide_SNP_6.Level_3.138.2010.0	Level_3	yes	broad.mit.edu:mirror_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg:data_format_normalizer:01	urn:lsid:broadinstitute.org:cancer.genome.analysis:00141:30	Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg_2015082100	COADREAD-FFPE.snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.seg.txt	Firehose-Standard-Data	Level_3	txt	gdac.broadinstitute.org_COADREAD-FFPE.Merge_snp__genome_wide_snp_6__broad_mit_edu__Level_3__segmented_scna_hg19__seg.Level_3.2015082100.0.0	yes
