Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLCH2	9651	genome.wustl.edu	37	1	2418791	2418791	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014638.2	+1	provisional	p.Q364*	1.000	8	0.000	7	0.714	0	-	-	-	-	HMMPfam_PI-PLC-X,HMMSmart_SM00148,superfamily_PLC-like phosphodiesterases
UQCRHL	440567	genome.wustl.edu	37	1	16133901	16133901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001089591.1	-1	provisional	p.V82M	0.998	177	0%	156	14.1%	0	-	-	-	-	HMMPfam_UCR_hinge,superfamily_Non-heme 11 kDa protein of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)
PTPRU	10076	genome.wustl.edu	37	1	29649897	29649897	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005704.3	+1	reviewed	p.Y1291*	1.000	33	0%	23	21.7%	45	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
ZNF642	339559	genome.wustl.edu	37	1	40945117	40945117	+	Silent	SNP	G	G	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_198494.2	+1	validated	p.G28	0.176	109	0%	62	35.5%	1	0%	-	-	-	NULL
DAB1	1600	genome.wustl.edu	37	1	57537315	57537315	+	Splice_Site	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_021080.3	-1	reviewed	e5-1	1.000	152	0%	99	36.4%	0	-	-	-	-	-
LRRC7	57554	genome.wustl.edu	37	1	70504190	70504190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020794.2	+1	validated	p.A857T	1.000	311	0%	197	38.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GBP1	2633	genome.wustl.edu	37	1	89523870	89523870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002053.2	-1	validated	p.R227W	0.953	327	0%	256	41.4%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GBP,superfamily_P-loop containing nucleoside triphosphate hydrolases
TGFBR3	7049	genome.wustl.edu	37	1	92200407	92200407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003243.3	-1	validated	p.R165Q	0.958	498	0%	411	42.1%	0	-	benign(0.004)	tolerated(0.62)	neutral(0.004)	NULL
AMY2B	280	genome.wustl.edu	37	1	104116480	104116481	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	AT	AT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020978.3	+1	reviewed	p.I222fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_SM00642,superfamily_(Trans)glycosidases
TAF13	6884	genome.wustl.edu	37	1	109607313	109607313	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005645.3	-1	reviewed	p.T69	1.000	204	0%	161	42.2%	18	33.3%	-	-	-	HMMPfam_TFIID-18kDa,superfamily_Histone-fold
TTF2	8458	genome.wustl.edu	37	1	117617534	117617534	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003594.3	+1	reviewed	p.H110Y	0.318	210	0%	123	16.3%	0	-	benign(0.144)	tolerated(0.57)	neutral(0.019)	NULL
UBAP2L	9898	genome.wustl.edu	37	1	154228162	154228162	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000433615	+1	known	p.V27I	0.869	180	0%	284	16.2%	326	12.8%	-	-	-	NULL
KCNN3	3782	genome.wustl.edu	37	1	154680613	154680613	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002249.4	-1	reviewed	p.D679N	0.997	96	0%	200	32%	8	12.5%	benign(0.045)	tolerated(0.25)	neutral(0.040)	NULL
INSRR	3645	genome.wustl.edu	37	1	156821148	156821148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014215.1	-1	validated	p.F388S	1.000	277	0%	292	23.6%	0	-	benign(0.016)	deleterious(0.04)	neutral(0.349)	HMMPfam_Recep_L_domain,superfamily_SSF52058
FCRL5	83416	genome.wustl.edu	37	1	157516976	157516976	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_031281.2	-1	validated	p.R22G	0.001	147	0%	169	22.5%	0	-	possibly_damaging(0.881)	deleterious(0.01)	deleterious(0.749)	superfamily_Immunoglobulin
CACYBP	27101	genome.wustl.edu	37	1	174977775	174977775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014412.2	+1	reviewed	p.R155G	1.000	216	0%	337	19%	95	21%	possibly_damaging(0.795)	deleterious(0.03)	deleterious(0.663)	superfamily_HSP20-like chaperones,HMMPfam_CS
CDC73	79577	genome.wustl.edu	37	1	193099332	193099332	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_024529.4	+1	reviewed	p.P89L	1.000	104	0%	201	19.9%	17	29.4%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
ASPM	259266	genome.wustl.edu	37	1	197115445	197115446	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	GA	GA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018136.4	-1	reviewed	p.L41fs	0.999:0.998	-	-	-	-	-	-	-	-	-	NULL
PPFIA4	8497	genome.wustl.edu	37	1	203036894	203036894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015053.1	+1	validated	p.R535Q	1.000	110	0%	134	10.4%	1	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	NULL
NFASC	23114	genome.wustl.edu	37	1	204939777	204939777	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015090.3	+1	reviewed	p.L357P	1.000	73	0%	123	20.3%	1	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_I-set,superfamily_SSF48726
PIGR	5284	genome.wustl.edu	37	1	207112799	207112799	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002644.3	-1	reviewed	p.T18M	0.130	96	0%	94	68.1%	1005	72.9%	benign(0.003)	tolerated(0.66)	neutral(0.003)	NULL
EPRS	2058	genome.wustl.edu	37	1	220146725	220146725	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004446.2	-1	reviewed	p.L1367F	1.000	235	0%	368	21.7%	142	14.7%	benign(0.103)	tolerated(0.1)	neutral(0.294)	HMMPfam_HGTP_anticodon,superfamily_Anticodon_bd
LYST	1130	genome.wustl.edu	37	1	235969296	235969296	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000081.2	-1	reviewed	p.P1047H	0.000	368	0%	547	15.9%	0	-	benign(0.313)	tolerated(0.06)	neutral(0.420)	NULL
LYST	1130	genome.wustl.edu	37	1	235972935	235972935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000081.2	-1	reviewed	p.R395C	0.995	265	0.4%	432	17.6%	0	-	benign(0.094)	tolerated(0.13)	neutral(0.260)	NULL
NID1	4811	genome.wustl.edu	37	1	236144980	236144980	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002508.2	-1	reviewed	p.T1053M	0.996	154	0%	264	17%	12	0%	possibly_damaging(0.934)	deleterious(0)	deleterious(0.825)	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
GTF3C2	2976	genome.wustl.edu	37	2	27560872	27560872	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001035521.1	-1	validated	p.C291R	1.000	476	0%	536	37.1%	21	23.8%	possibly_damaging(0.517)	deleterious(0)	deleterious(0.619)	NULL
NRXN1	9378	genome.wustl.edu	37	2	50765688	50765688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001135659.1	-1	reviewed	p.G656W	1.000	264	0%	188	10.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
IGKV1D-17	28900	genome.wustl.edu	37	2	90122099	90122099	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000483379	+1	known	p.A106E	0.920	619	0%	418	29.4%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
MRPL30	51263	genome.wustl.edu	37	2	99802683	99802683	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_145212.2	+1	reviewed	p.R6H	0.154	117	0%	168	34.5%	13	23%	benign(0.008)	deleterious(0)	neutral(0.445)	NULL
SEPT10	151011	genome.wustl.edu	37	2	110301779	110301779	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000334001	-1	known	p.F519V	0.348	33	0%	24	41.7%	2	0%	unknown(0)	deleterious(0)	-	NULL
ZC3H6	376940	genome.wustl.edu	37	2	113080289	113080289	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_198581.2	+1	validated	p.R384C	0.992	214	0%	221	40.7%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RGPD8	727851	genome.wustl.edu	37	2	113161751	113161751	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000302558	-1	known	p.G356	0.999	368	0%	361	8%	0	-	-	-	-	NULL
POLR1B	84172	genome.wustl.edu	37	2	113333173	113333173	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_019014.4	+1	validated	p.R1092H	1.000	287	0%	189	30.7%	15	13.3%	probably_damaging(0.96)	tolerated(0.06)	deleterious(0.726)	HMMPfam_RNA_pol_Rpb2_7,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
CCDC93	54520	genome.wustl.edu	37	2	118766132	118766132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_019044.3	-1	validated	p.P49S	1.000	239	0%	248	31.9%	0	-	benign(0.039)	tolerated(0.07)	neutral(0.321)	HMMPfam_KOG2701
CLASP1	23332	genome.wustl.edu	37	2	122104696	122104697	+	In_Frame_Ins	INS	-	-	CCTTAC	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015282.2	-1	validated	p.1483in_frame_insGK	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
GALNT13	114805	genome.wustl.edu	37	2	155158024	155158024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_052917.2	+1	validated	p.V360I	1.000	255	0%	166	16.9%	0	-	benign(0.006)	tolerated(0.76)	neutral(0.001)	superfamily_Nucleotide-diphospho-sugar transferases
BAZ2B	29994	genome.wustl.edu	37	2	160229564	160229564	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_013450.2	-1	validated	p.S1402T	1.000	257	0%	236	39.4%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
TANK	10010	genome.wustl.edu	37	2	162087509	162087509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004180.2	+1	reviewed	p.C183Y	1.000	158	0%	89	16.9%	13	23%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166245650	166245650	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001040142.1	+1	reviewed	p.N1778	1.000	1021	0%	648	20.7%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
NFE2L2	4780	genome.wustl.edu	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006164.3	-1	validated	p.E82D	1.000	134	0%	122	16.4%	34	5.8%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	NULL
TTN	7273	genome.wustl.edu	37	2	179443688	179443690	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	TTG	TTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000356127	-1	known	p.N20119in_frame_del	1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
STAT1	6772	genome.wustl.edu	37	2	191862646	191862646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_007315.3	-1	reviewed	p.R241W	0.995	133	0%	113	38.1%	39	35.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_STAT_alpha,superfamily_STAT
PGAP1	80055	genome.wustl.edu	37	2	197706041	197706041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_024989.3	-1	validated	p.A896T	1.000	135	0%	101	18.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
NRP2	8828	genome.wustl.edu	37	2	206610567	206610567	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_201266.1	+1	reviewed	p.P580L	0.998	61	0%	32	15.6%	2	50%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_2,superfamily_Galactose-binding domain-like
HHATL	57467	genome.wustl.edu	37	3	42739634	42739634	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020707.3	-1	validated	p.Q231H	1.000	91	0%	75	21.3%	1	0%	probably_damaging(0.998)	tolerated(0.17)	deleterious(0.533)	HMMPfam_MBOAT
IP6K1	9807	genome.wustl.edu	37	3	49785304	49785304	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_153273.3	-1	reviewed	p.R57H	1.000	74	0%	58	43.1%	8	75%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_SAICAR synthase-like
SEMA3B	7869	genome.wustl.edu	37	3	50311393	50311393	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004636.2	+1	reviewed	p.C347	0.997	36	0%	23	30.4%	18	44.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLMAP	7871	genome.wustl.edu	37	3	57882285	57882285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_007159.2	+1	validated	p.P436S	1.000	36	0%	46	39.1%	11	63.6%	possibly_damaging(0.922)	tolerated(0.18)	neutral(0.427)	NULL
MAGI1	9223	genome.wustl.edu	37	3	65415497	65415497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001033057.1	-1	reviewed	p.H622R	1.000	177	0%	144	15.3%	5	80%	possibly_damaging(0.595)	tolerated(0.33)	neutral(0.230)	superfamily_PDZ domain-like
ZXDC	79364	genome.wustl.edu	37	3	126191101	126191101	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_025112.4	-1	validated	p.R319*	1.000	93	0%	61	11.5%	4	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SLC33A1	9197	genome.wustl.edu	37	3	155547521	155547521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004733.2	-1	reviewed	p.V480I	0.931	94	0%	119	40.3%	34	20.5%	benign(0.009)	tolerated(0.56)	neutral(0.007)	superfamily_MFS general substrate transporter
FXR1	8087	genome.wustl.edu	37	3	180667086	180667086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005087.2	+1	reviewed	p.K195N	1.000	236	0%	234	14.1%	43	4.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PCYT1A	5130	genome.wustl.edu	37	3	195974330	195974330	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005017.2	-1	provisional	p.R132S	1.000	110	0%	82	12.2%	17	17.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_transf_2,superfamily_SSF52374
C3orf43	255798	genome.wustl.edu	37	3	196234758	196234758	+	Nonstop_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001077657.1	-1	validated	p.*215Y	0.250	70	0%	49	12.2%	0	-	-	-	-	NULL
MSX1	4487	genome.wustl.edu	37	4	4864581	4864581	+	Missense_Mutation	SNP	C	C	T	rs104893853	byCluster	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002448.3	+1	reviewed	p.S208L	1.000	94	0%	22	36.4%	952	42.2%	possibly_damaging(0.559)	deleterious(0)	deleterious(0.635)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
ANAPC4	29945	genome.wustl.edu	37	4	25394002	25394002	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_013367.2	+1	reviewed	p.R250W	1.000	109	0%	88	29.5%	19	52.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
FIP1L1	81608	genome.wustl.edu	37	4	54294283	54294283	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_030917.3	+1	reviewed	p.L369	0.919	108	0%	84	35.7%	43	16.2%	-	-	-	NULL
LNX1	84708	genome.wustl.edu	37	4	54343122	54343122	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001126328.1	-1	reviewed	p.V564I	0.000	371	0%	305	14.1%	22	18.1%	benign(0)	tolerated(0.63)	neutral(0.004)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
KDR	3791	genome.wustl.edu	37	4	55964953	55964953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002253.2	-1	reviewed	p.N762Y	1.000	145	0%	152	36.2%	2	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
TIGD2	166815	genome.wustl.edu	37	4	90035363	90035363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_145715.2	+1	reviewed	p.V413A	0.994	155	0%	82	11%	6	33.3%	benign(0.427)	tolerated(0.12)	neutral(0.400)	NULL
NFKB1	4790	genome.wustl.edu	37	4	103537620	103537620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003998.3	+1	reviewed	p.D927N	1.000	215	0%	119	38.7%	47	27.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TTC29	83894	genome.wustl.edu	37	4	147741361	147741361	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_031956.2	-1	validated	p.K339N	0.624	217	0%	217	23%	5	20%	benign(0.28)	tolerated(0.36)	neutral(0.106)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
TMEM144	55314	genome.wustl.edu	37	4	159165484	159165484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018342.4	+1	validated	p.M313V	1.000	136	0%	107	43%	6	33.3%	benign(0)	tolerated(1)	-	NULL
STOX2	56977	genome.wustl.edu	37	4	184932195	184932195	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020225.1	+1	provisional	p.L735*	0.994	59	0%	31	12.9%	1	0%	-	-	-	NULL
CDH12	1010	genome.wustl.edu	37	5	22078650	22078650	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004061.3	-1	reviewed	p.R46W	0.619	314	0.3%	248	39.5%	0	-	possibly_damaging(0.805)	deleterious(0.01)	deleterious(0.709)	NULL
MRPS30	10884	genome.wustl.edu	37	5	44815015	44815015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_016640.3	+1	reviewed	p.G344V	1.000	266	0%	213	39.9%	22	13.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PDCD9
PIK3R1	5295	genome.wustl.edu	37	5	67592108	67592108	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_181523.1	+1	reviewed	p.R642*	0.990	241	0%	192	27.1%	193	28.4%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
NR2F1	7025	genome.wustl.edu	37	5	92923708	92923708	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005654.4	+1	provisional	p.C183	1.000	47	0%	25	20%	11	18.1%	-	-	-	superfamily_Str_ncl_receptor,HMMPfam_zf-C4_C
PAM	5066	genome.wustl.edu	37	5	102342537	102342537	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000379799	+1	known	p.P385S	0.914	246	0%	191	13.1%	403	33.2%	-	-	-	superfamily_NHL repeat
GIN1	54826	genome.wustl.edu	37	5	102432488	102432488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_017676.2	-1	validated	p.I351V	0.032	303	0%	214	36.4%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
SRFBP1	153443	genome.wustl.edu	37	5	121356274	121356274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_152546.2	+1	validated	p.G282S	1.000	293	0%	299	39.8%	1	100%	possibly_damaging(0.895)	tolerated(0.67)	neutral(0.355)	NULL
PCDHA13	56136	genome.wustl.edu	37	5	140263388	140263388	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018904.2	+1	reviewed	p.A512V	1.000	78	0%	60	43.3%	0	-	possibly_damaging(0.732)	deleterious(0)	deleterious(0.712)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB7	56129	genome.wustl.edu	37	5	140553910	140553910	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018940.2	+1	reviewed	p.L498	0.002	236	0%	107	50.5%	2	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGA8	9708	genome.wustl.edu	37	5	140774472	140774472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_032088.1	+1	reviewed	p.A698T	0.995	49	0%	24	29.2%	0	-	benign(0.199)	deleterious(0.01)	neutral(0.425)	NULL
JARID2	3720	genome.wustl.edu	37	6	15511536	15511536	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004973.2	+1	reviewed	p.I952	1.000	78	0%	48	41.7%	13	15.3%	-	-	-	HMMSmart_SM00558,HMMPfam_JmjC
KIAA0319	9856	genome.wustl.edu	37	6	24596506	24596506	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014809.3	-1	reviewed	p.D132	0.553	118	0%	84	14.3%	0	-	-	-	-	NULL
HIST1H1A	3024	genome.wustl.edu	37	6	26017426	26017426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005325.3	-1	reviewed	p.K179E	1.000	171	0%	117	30.8%	0	-	unknown(0)	tolerated(0.16)	-	NULL
TRIM27	5987	genome.wustl.edu	37	6	28871884	28871884	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006510.4	-1	reviewed	p.V502A	0.991	262	0%	202	29.2%	173	34.1%	unknown(0)	deleterious(0)	-	NULL
SLC39A7	7922	genome.wustl.edu	37	6	33171339	33171339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001077516.1	+1	validated	p.T387A	1.000	63	0%	37	10.8%	402	13.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Zip
FGD2	221472	genome.wustl.edu	37	6	36995822	36995822	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173558.3	+1	validated	p.Q617	0.998	41	0%	19	21.1%	3	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PTK7	5754	genome.wustl.edu	37	6	43098061	43098061	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002821.3	+1	reviewed	p.R188	0.008	61	0%	39	10.3%	54	37%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SRF	6722	genome.wustl.edu	37	6	43144340	43144340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003131.2	+1	reviewed	p.P366L	1.000	143	0%	89	29.2%	31	12.9%	possibly_damaging(0.919)	tolerated(0.1)	deleterious(0.656)	NULL
KLHL31	401265	genome.wustl.edu	37	6	53519187	53519187	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001003760.4	-1	validated	p.H295R	1.000	215	0%	161	48.4%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_Gal_oxid_central
HACE1	57531	genome.wustl.edu	37	6	105178225	105178225	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020771.3	-1	validated	p.I860	0.633	165	0%	137	11.7%	0	-	-	-	-	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain
CTAGE9	643854	genome.wustl.edu	37	6	132031511	132031511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001145659.1	-1	provisional	p.N216S	0.000	304	0%	300	14%	1	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
VNN1	8876	genome.wustl.edu	37	6	133013632	133013632	+	Silent	SNP	G	G	T	rs3798799	byFrequency	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004666.2	-1	reviewed	p.S306	0.072	153	0%	118	37.3%	2	50%	-	-	-	NULL
LATS1	9113	genome.wustl.edu	37	6	150004256	150004256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004690.2	-1	reviewed	p.R657C	1.000	209	0%	153	11.1%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CLDN20	49861	genome.wustl.edu	37	6	155596902	155596902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001001346.3	+1	reviewed	p.G17R	1.000	254	0%	235	38.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PMP22_Claudin
RPS6KA2	6196	genome.wustl.edu	37	6	166912132	166912132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001006932.1	-1	reviewed	p.G212D	1.000	74	0%	40	15%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
HOXA3	3200	genome.wustl.edu	37	7	27148284	27148284	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_030661.4	-1	reviewed	p.A194	0.987	60	0%	31	25.8%	3	33.3%	-	-	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PKD1L1	168507	genome.wustl.edu	37	7	47852856	47852857	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_138295.2	-1	reviewed	p.S2403fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_PKD_channel
TRIM74	378108	genome.wustl.edu	37	7	72430723	72430723	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_198853.1	-1	provisional	p.P185	0.980	80	0%	55	18.2%	1	100%	-	-	-	NULL
MAGI2	9863	genome.wustl.edu	37	7	77764356	77764356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_012301.3	-1	reviewed	p.R1005C	1.000	126	0%	71	40.8%	0	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like
ADAM22	53616	genome.wustl.edu	37	7	87759714	87759714	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_021723.2	+1	reviewed	p.H255	1.000	129	0%	142	38.7%	0	-	-	-	-	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"
PDK4	5166	genome.wustl.edu	37	7	95224435	95224435	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002612.3	-1	reviewed	p.R58	0.919	125	0%	60	11.7%	1	0%	-	-	-	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain
MOGAT3	346606	genome.wustl.edu	37	7	100839340	100839340	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_178176.2	-1	provisional	p.E305K	0.001	15	0.000	8	0.750	0	-	benign(0.004)	tolerated(0.52)	neutral(0.009)	HMMPfam_DAGAT
CDHR3	222256	genome.wustl.edu	37	7	105658463	105658463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_152750.4	+1	validated	p.P533L	0.002	66	0%	62	32.3%	0	-	benign(0.059)	tolerated(0.18)	neutral(0.060)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SLC26A3	1811	genome.wustl.edu	37	7	107423712	107423712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000111.2	-1	reviewed	p.V353M	0.998	306	0%	216	11.1%	0	-	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_Sulfate_transp
LRRC4	64101	genome.wustl.edu	37	7	127670380	127670380	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_022143.4	-1	validated	p.Q105R	1.000	55	0%	22	27.3%	5	20%	benign(0.081)	deleterious(0.02)	neutral(0.389)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
ZNF862	643641	genome.wustl.edu	37	7	149558297	149558297	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001099220.1	+1	provisional	p.I683T	1.000	36	0%	14	35.7%	5	0%	possibly_damaging(0.814)	deleterious(0)	deleterious(0.752)	NULL
NOM1	64434	genome.wustl.edu	37	7	156746891	156746891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_138400.1	+1	provisional	p.A403T	0.011	94	0%	78	39.7%	10	20%	benign(0.146)	tolerated(0.08)	neutral(0.312)	HMMPfam_MIF4G,HMMSmart_MIF4G,superfamily_ARM-type_fold
MYOM2	9172	genome.wustl.edu	37	8	2088763	2088763	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003970.2	+1	validated	p.F1306	0.009	176	0%	156	48.7%	1	0%	-	-	-	superfamily_SSF48726
BMP1	649	genome.wustl.edu	37	8	22033731	22033731	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006129.4	+1	reviewed	p.R113T	0.390	56	0%	32	15.6%	18	50%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
EPHX2	2053	genome.wustl.edu	37	8	27364474	27364474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001979.4	+1	reviewed	p.T208M	0.000	136	0%	83	39.8%	11	27.2%	possibly_damaging(0.485)	tolerated(0.07)	deleterious(0.480)	superfamily_SSF56784
RBPMS	11030	genome.wustl.edu	37	8	30402045	30402045	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001008712.1	+1	reviewed	p.S144R	1.000	311	0%	215	12.6%	184	4.8%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	NULL
ST18	9705	genome.wustl.edu	37	8	53030908	53030908	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014682.2	-1	validated	p.L950R	1.000	104	0%	102	37.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP6V1H	51606	genome.wustl.edu	37	8	54714393	54714393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015941.2	-1	reviewed	p.R215C	1.000	79	0%	70	18.6%	52	17.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_V-ATPase_H,superfamily_ARM repeat
ASPH	444	genome.wustl.edu	37	8	62415992	62415992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004318.3	-1	reviewed	p.R735W	1.000	55	0%	54	48.1%	38	73.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197
STAU2	27067	genome.wustl.edu	37	8	74464360	74464360	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014393.2	-1	reviewed	p.T441S	1.000	297	0%	281	13.2%	7	14.2%	benign(0.428)	deleterious(0.01)	deleterious(0.544)	NULL
HNF4G	3174	genome.wustl.edu	37	8	76472673	76472673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004133.4	+1	validated	p.M396I	1.000	135	0%	97	11.3%	0	-	benign(0.001)	tolerated(0.26)	neutral(0.034)	NULL
C9orf93	203238	genome.wustl.edu	37	9	15623374	15623374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173550.2	+1	predicted	p.S262N	0.999	258	0%	227	10.6%	0	-	probably_damaging(0.991)	tolerated(0.18)	deleterious(0.500)	NULL
MLLT3	4300	genome.wustl.edu	37	9	20414240	20414240	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004529.2	-1	validated	p.E202K	1.000	211	0%	197	12.2%	2	0%	possibly_damaging(0.798)	deleterious(0.04)	deleterious(0.649)	NULL
IL11RA	3590	genome.wustl.edu	37	9	34657553	34657553	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001142784.1	+1	reviewed	p.T205	0.945	49	0%	33	45.5%	5	0%	-	-	-	superfamily_Fibronectin type III
TLN1	7094	genome.wustl.edu	37	9	35716421	35716421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006289.3	-1	reviewed	p.A864V	1.000	112	0%	91	16.5%	25	4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF109885
MCART1	92014	genome.wustl.edu	37	9	37879638	37879638	+	RNA	DEL	T	T	-	rs140962867	byCluster;by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NR_024872.1	-1	validated	NULL	0.002	-	-	-	-	-	-	-	-	-	-
NAA35	60560	genome.wustl.edu	37	9	88573426	88573426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_024635.3	+1	validated	p.M66I	1.000	61	0%	55	38.2%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Mak10
ISCA1	81689	genome.wustl.edu	37	9	88881107	88881107	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_030940.3	-1	validated	e4-1	1.000	218	0%	208	32.2%	2	50%	-	-	-	-
FAM75C1	441452	genome.wustl.edu	37	9	90537610	90537610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001145124.1	+1	validated	p.A930T	0.001	266	0%	212	40.1%	0	-	-	-	-	NULL
AUH	549	genome.wustl.edu	37	9	93983105	93983105	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001698.2	-1	reviewed	p.A275	0.001	195	0%	165	14.5%	10	20%	-	-	-	superfamily_ClpP/crotonase
HSD17B3	3293	genome.wustl.edu	37	9	99003054	99003054	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000197.1	-1	reviewed	p.A270T	0.875	187	0.5%	155	39.4%	9	66.6%	benign(0.001)	tolerated(0.93)	-	PatternScan_ALDEHYDE_DEHYDR_CYS
ZNF367	195828	genome.wustl.edu	37	9	99154745	99154745	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_153695.3	-1	validated	p.E255	1.000	106	0%	107	30.8%	2	0%	-	-	-	NULL
LRRC8A	56262	genome.wustl.edu	37	9	131678559	131678559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001127244.1	+1	reviewed	p.R781H	1.000	65	0%	27	25.9%	29	0%	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	superfamily_L domain-like
PITRM1	10531	genome.wustl.edu	37	10	3208420	3208420	+	Splice_Site	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014889.2	-1	validated	e4+1	1.000	220	0%	180	35%	0	-	-	-	-	-
FRMD4A	55691	genome.wustl.edu	37	10	13852876	13852876	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018027.3	-1	validated	p.L48	0.913	59	0%	41	36.6%	0	-	-	-	-	HMMPfam_FERM_N,HMMSmart_B41,superfamily_SSF54236
CUBN	8029	genome.wustl.edu	37	10	16877011	16877011	+	Splice_Site	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001081.3	-1	reviewed	e64+2	1.000	309	0%	264	12.5%	0	-	-	-	-	-
CUBN	8029	genome.wustl.edu	37	10	17113521	17113521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001081.3	-1	reviewed	p.R843S	0.999	143	0%	160	11.3%	0	-	benign(0.269)	tolerated(0.46)	neutral(0.041)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
KIAA1217	56243	genome.wustl.edu	37	10	24832773	24832773	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_019590.3	+1	validated	p.L1526fs	0.001	-	-	-	-	-	-	-	-	-	NULL
ARMC4	55130	genome.wustl.edu	37	10	28149630	28149630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018076.2	-1	validated	p.A982V	0.998	137	0%	82	57.3%	7	28.5%	possibly_damaging(0.804)	deleterious(0.01)	deleterious(0.708)	HMMSmart_SM00185,superfamily_ARM repeat
ARMC4	55130	genome.wustl.edu	37	10	28272773	28272773	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_018076.2	-1	validated	p.G273A	1.000	84	0%	75	12%	0	-	possibly_damaging(0.587)	tolerated(0.2)	neutral(0.252)	NULL
FRMPD2	143162	genome.wustl.edu	37	10	49457132	49457132	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001018071.3	-1	reviewed	p.A81T	0.998	85	0%	55	41.8%	0	-	probably_damaging(0.956)	tolerated(0.12)	deleterious(0.660)	HMMSmart_SM00750
ARID5B	84159	genome.wustl.edu	37	10	63850870	63850870	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_032199.2	+1	validated	p.E550*	0.963	150	0%	117	47.9%	3	33.3%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89692905	89692905	+	Missense_Mutation	SNP	G	G	T	rs121913292		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000371953	+1	known	p.R130L	1.000	297	0.3%	297	85.2%	34	94.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DSPc,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
ALDH18A1	5832	genome.wustl.edu	37	10	97402882	97402883	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002860.3	-1	reviewed	p.H57fs	0.993:0.993	-	-	-	-	-	-	-	-	-	NULL
SMC3	9126	genome.wustl.edu	37	10	112350787	112350787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005445.3	+1	reviewed	p.T570M	1.000	109	0%	124	13.7%	8	37.5%	probably_damaging(0.993)	tolerated(0.09)	deleterious(0.746)	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases
EPS8L2	64787	genome.wustl.edu	37	11	721595	721595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_022772.3	+1	reviewed	p.E267K	1.000	11	0%	11	45.5%	36	47.2%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
NLRP14	338323	genome.wustl.edu	37	11	7064548	7064548	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_176822.3	+1	reviewed	p.A431T	0.983	320	0%	304	38.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ENSG00000246273	0	genome.wustl.edu	37	11	9830659	9830659	+	RNA	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000498905	+1	known	NULL	0.004	33	0%	24	29.2%	1	100%	-	-	-	-
IGSF22	283284	genome.wustl.edu	37	11	18738287	18738287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173588.3	-1	validated	p.L412F	1.000	177	0%	137	31.4%	0	-	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
NAV2	89797	genome.wustl.edu	37	11	19954754	19954754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_182964.5	+1	validated	p.G322R	1.000	367	0%	184	32.6%	11	0%	possibly_damaging(0.935)	tolerated(0.12)	deleterious(0.641)	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48142635	48142635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002843.3	+1	reviewed	p.A145T	0.001	109	0%	53	13.2%	0	-	benign(0.038)	tolerated(0.55)	neutral(0.009)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
LRRC55	219527	genome.wustl.edu	37	11	56954920	56954920	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001005210.2	+1	validated	p.R331H	1.000	100	0%	46	43.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NXF1	10482	genome.wustl.edu	37	11	62561744	62561744	+	Silent	SNP	G	G	A	rs181325349	by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006362.4	-1	reviewed	p.L582	0.044	99	0%	47	36.2%	60	16.6%	-	-	-	HMMPfam_TAP_C,HMMSmart_TAP_C,superfamily_UBA_like
PPP2R5B	5526	genome.wustl.edu	37	11	64698026	64698026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006244.3	+1	reviewed	p.H286Y	1.000	51	0%	45	26.7%	15	6.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_B56
INPPL1	3636	genome.wustl.edu	37	11	71942633	71942634	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001567.3	+1	reviewed	p.K531fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_IPPc,HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
ODZ4	26011	genome.wustl.edu	37	11	78369233	78369233	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001098816.2	-1	validated	p.Q2727R	1.000	191	0%	117	35.9%	2	100%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
FAT3	120114	genome.wustl.edu	37	11	92568207	92568207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001008781.2	+1	validated	p.A3348V	0.990	54	0%	42	35.7%	0	-	benign(0.034)	tolerated(0.92)	neutral(0.002)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
ENDOD1	23052	genome.wustl.edu	37	11	94861586	94861586	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015036.2	+1	validated	p.E116K	0.112	129	0%	107	15%	4	0%	benign(0.139)	tolerated(0.69)	neutral(0.014)	HMMPfam_Endonuclease_NS,HMMSmart_NUC,superfamily_SSF54060
KBTBD3	143879	genome.wustl.edu	37	11	105924550	105924550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_152433.3	-1	validated	p.R289Q	1.000	161	0%	125	42.4%	5	0%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40677756	40677756	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_198578.3	+1	reviewed	p.A774V	0.995	252	0.4%	209	11%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ANKRD52	283373	genome.wustl.edu	37	12	56639298	56639298	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173595.3	-1	validated	p.T756M	0.996	20	0%	38	26.3%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
LYZ	4069	genome.wustl.edu	37	12	69746053	69746053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000239.2	+1	reviewed	p.R119C	0.010	135	0%	116	12.1%	110	0%	benign(0.137)	deleterious(0.04)	neutral(0.360)	HMMPfam_Lys,HMMSmart_SM00263,superfamily_Lysozyme-like
C12orf63	374467	genome.wustl.edu	37	12	97051828	97051828	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_198520.2	+1	validated	p.V182L	1.000	255	0%	193	38.9%	0	-	unknown(0)	tolerated(0.37)	-	NULL
KSR2	283455	genome.wustl.edu	37	12	117962949	117962949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173598.4	-1	validated	p.R614W	1.000	75	0%	51	11.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
DDX55	57696	genome.wustl.edu	37	12	124094495	124094495	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020936.1	+1	reviewed	p.T187	1.000	72	0%	72	45.8%	4	0%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
MTUS2	23281	genome.wustl.edu	37	13	29599704	29599704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001033602.2	+1	validated	p.S300L	0.000	171	0%	99	52.5%	0	-	benign(0)	tolerated(0.58)	neutral(0.005)	NULL
RCBTB2	1102	genome.wustl.edu	37	13	49085932	49085932	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001268.2	-1	reviewed	p.A253S	1.000	92	0%	89	21.3%	9	22.2%	benign(0.003)	tolerated(0.82)	neutral(0.001)	HMMPfam_RCC1,superfamily_RCC1/BLIP-II
COL4A1	1282	genome.wustl.edu	37	13	110853211	110853211	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001845.4	-1	reviewed	p.P370	1.000	76	0%	98	39.8%	26	15.3%	-	-	-	HMMPfam_Collagen
TRAC	28755	genome.wustl.edu	37	14	22539385	22539385	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000446346	+1	known	p.H77	0.016	134	0%	125	15.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
BRMS1L	84312	genome.wustl.edu	37	14	36331798	36331798	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_032352.3	+1	reviewed	p.S148	1.000	145	0%	145	12.4%	4	25%	-	-	-	HMMPfam_Sds3
SSTR1	6751	genome.wustl.edu	37	14	38679111	38679111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001049.2	+1	reviewed	p.V173M	1.000	76	0%	49	34.7%	0	-	probably_damaging(0.99)	tolerated(0.2)	deleterious(0.490)	HMMPfam_7tm_1,superfamily_SSF81321
SOCS4	122809	genome.wustl.edu	37	14	55510262	55510262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_080867.2	+1	reviewed	p.Q168R	0.008	211	0.5%	152	38.2%	3	33.3%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
DAAM1	23002	genome.wustl.edu	37	14	59820655	59820655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014992.1	+1	reviewed	p.V787M	1.000	49	0%	51	9.8%	6	0%	possibly_damaging(0.76)	tolerated(0.18)	neutral(0.337)	HMMSmart_SM00498,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)
SYNE2	23224	genome.wustl.edu	37	14	64532165	64532165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_182914.2	+1	reviewed	p.L3410F	0.064	136	0%	84	34.5%	1	0%	probably_damaging(0.996)	-	-	superfamily_4_helix_cytokine
GPHN	10243	genome.wustl.edu	37	14	67578599	67578599	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020806.4	+1	reviewed	p.R479*	0.998	71	0%	97	36.1%	10	0%	-	-	-	HMMPfam_MoeA_N,superfamily_MoeA_N
LIN52	91750	genome.wustl.edu	37	14	74564539	74564539	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001024674.2	+1	validated	p.R63C	1.000	60	0%	43	11.6%	2	100%	benign(0.03)	deleterious(0.03)	neutral(0.366)	HMMPfam_Ret_tiss
TTC7B	145567	genome.wustl.edu	37	14	91110424	91110424	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001010854.1	-1	provisional	p.D573	1.000	286	0%	260	10.8%	7	14.2%	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
HHIPL1	84439	genome.wustl.edu	37	14	100126628	100126628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001127258.1	+1	validated	p.P463S	1.000	37	0%	26	50%	3	33.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Soluble quinoprotein glucose dehydrogenase
DLK1	8788	genome.wustl.edu	37	14	101200592	101200592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003836.5	+1	reviewed	p.A171T	0.000	68	0%	41	17.1%	0	-	benign(0)	tolerated(0.63)	neutral(0.004)	superfamily_EGF/Laminin
IGHA1	3493	genome.wustl.edu	37	14	106173713	106173713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000390547	-1	known	p.P285H	0.168	10	0%	10	40%	683	3.2%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726
LOC283685	283685	genome.wustl.edu	37	15	23685004	23685005	+	In_Frame_Ins	INS	-	-	CAT	rs34879341	byCluster;by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	XM_002343322.1	-1	model	p.724in_frame_insM	0.000:0.001	-	-	-	-	-	-	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	34133056	34133056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001036.3	+1	validated	p.E4337K	0.995	115	0%	94	19.1%	0	-	benign(0.006)	-	-	HMMPfam_RR_TM4-6
C15orf52	388115	genome.wustl.edu	37	15	40630791	40630791	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_207380.2	-1	validated	p.R197fs	0.393	-	-	-	-	-	-	-	-	-	NULL
NDUFAF1	51103	genome.wustl.edu	37	15	41688965	41688965	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_016013.2	-1	validated	p.K98T	1.000	158	0%	159	34%	25	28%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	NULL
PLA2G4D	283748	genome.wustl.edu	37	15	42379524	42379524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_178034.3	-1	validated	p.R77C	0.232	165	0%	81	22.2%	0	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TTBK2	146057	genome.wustl.edu	37	15	43093592	43093592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000263802	-1	known	p.R531C	1.000	159	0%	130	47.7%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_Filament
TTBK2	146057	genome.wustl.edu	37	15	43109245	43109245	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173500.3	-1	reviewed	p.N196	0.985	71	0%	65	15.4%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
DUOXA1	90527	genome.wustl.edu	37	15	45414402	45414402	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_144565.2	-1	provisional	p.F62	1.000	23	0%	17	52.9%	8	0%	-	-	-	HMMPfam_DuoxA
HCN4	10021	genome.wustl.edu	37	15	73635776	73635776	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005477.2	-1	reviewed	p.R387C	1.000	57	0%	36	55.6%	1	0%	probably_damaging(0.993)	deleterious(0.01)	deleterious(0.856)	HMMPfam_Ion_trans,superfamily_SSF81324
ACAN	176	genome.wustl.edu	37	15	89402170	89402170	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_013227.3	+1	reviewed	p.E2003D	0.008	67	0%	30	40%	3	0%	possibly_damaging(0.582)	tolerated(0.15)	neutral(0.441)	NULL
POLG	5428	genome.wustl.edu	37	15	89867427	89867427	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001126131.1	-1	reviewed	p.L661V	0.031	46	0%	22	59.1%	14	42.8%	benign(0.291)	tolerated(0.59)	neutral(0.094)	superfamily_SSF56672
SRRM2	23524	genome.wustl.edu	37	16	2816109	2816109	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_016333.3	+1	validated	p.P1860	0.009	144	0%	86	17.4%	41	14.6%	-	-	-	NULL
CREBBP	1387	genome.wustl.edu	37	16	3900321	3900321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004380.2	-1	reviewed	p.A259T	0.503	190	0%	113	41.6%	13	7.6%	probably_damaging(0.962)	tolerated(0.25)	neutral(0.442)	NULL
SMG1	23049	genome.wustl.edu	37	16	18826834	18826834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015092.4	-1	reviewed	p.R3481Q	1.000	243	0%	180	32.8%	5	60%	probably_damaging(0.994)	tolerated(0.63)	neutral(0.456)	NULL
SMG1	23049	genome.wustl.edu	37	16	18890912	18890912	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015092.4	-1	reviewed	p.C475R	1.000	94	0%	116	22.4%	4	0%	possibly_damaging(0.563)	tolerated(0.37)	neutral(0.211)	superfamily_ARM repeat
ZKSCAN2	342357	genome.wustl.edu	37	16	25251274	25251274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001012981.4	-1	validated	p.R923C	0.848	232	0%	256	11.3%	0	-	probably_damaging(0.968)	tolerated(1)	neutral(0.410)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
GTF3C1	2975	genome.wustl.edu	37	16	27499718	27499718	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001520.3	-1	validated	p.I1177S	0.064	237	0%	157	29.3%	14	35.7%	benign(0.001)	tolerated(0.33)	neutral(0.024)	NULL
RRN3P2	653390	genome.wustl.edu	37	16	29110458	29110458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000427965	+1	known	p.W375R	0.991	81	2.5%	109	21.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_RRN3
CYLD	1540	genome.wustl.edu	37	16	50788329	50788329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_015247.2	+1	reviewed	p.I303V	1.000	64	0%	62	45.2%	5	20%	benign(0.001)	tolerated(0.11)	neutral(0.272)	HMMPfam_CAP_GLY,superfamily_Cap-Gly domain
MMP15	4324	genome.wustl.edu	37	16	58072237	58072237	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002428.2	+1	reviewed	p.R127W	1.000	56	0%	31	51.6%	35	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CDH11	1009	genome.wustl.edu	37	16	64981804	64981804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001797.2	-1	reviewed	p.P698H	1.000	351	0%	247	37.2%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin_C
ZFHX3	463	genome.wustl.edu	37	16	72830903	72830904	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	CT	CT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006885.3	-1	reviewed	p.R1893fs	0.999:0.991	-	-	-	-	-	-	-	-	-	NULL
MAF	4094	genome.wustl.edu	37	16	79632883	79632883	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005360.4	-1	reviewed	p.R306H	1.000	37	0%	19	42.1%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_bZIP_Maf,HMMSmart_BRLZ,superfamily_Euk_transcr_DNA
MPHOSPH6	10200	genome.wustl.edu	37	16	82185079	82185079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005792.2	-1	validated	p.D69Y	1.000	104	0%	101	34.7%	6	16.6%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	HMMPfam_MPP6
DNAAF1	123872	genome.wustl.edu	37	16	84199565	84199565	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000439133	+1	known	p.S95L	0.000	119	0%	158	12.7%	1	100%	-	-	-	NULL
PSMB6	5694	genome.wustl.edu	37	17	4701064	4701064	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002798.1	+1	reviewed	p.A130	0.558	148	0%	122	21.3%	448	17.1%	-	-	-	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)
ARHGEF15	22899	genome.wustl.edu	37	17	8222456	8222456	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173728.2	+1	reviewed	p.R722Q	1.000	86	0%	50	22%	1	0%	possibly_damaging(0.932)	tolerated(0.35)	neutral(0.399)	superfamily_SSF50729
KIAA0100	9703	genome.wustl.edu	37	17	26966630	26966630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014680.2	-1	validated	p.R349H	1.000	165	0%	82	28%	15	26.6%	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	NULL
CCL8	6355	genome.wustl.edu	37	17	32646508	32646509	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000394620	+1	known	p.L6fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
ACACA	31	genome.wustl.edu	37	17	35508301	35508301	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_198834.1	-1	reviewed	p.E1832fs	0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Carboxyl_trans,superfamily_SSF52096
GPR179	440435	genome.wustl.edu	37	17	36483224	36483224	+	Silent	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001004334.2	-1	validated	p.P2076	0.621	249	0%	184	14.1%	0	-	-	-	-	NULL
KRT26	353288	genome.wustl.edu	37	17	38928088	38928088	+	Missense_Mutation	SNP	C	C	T	rs185320223	by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_181539.4	-1	reviewed	p.R93H	1.000	278	0%	172	35.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Filament
WNK4	65266	genome.wustl.edu	37	17	40940805	40940805	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_032387.4	+1	reviewed	p.A716V	1.000	95	0%	52	38.5%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
NMT1	4836	genome.wustl.edu	37	17	43182276	43182276	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_021079.3	+1	provisional	p.F461Y	1.000	42	0%	32	15.6%	48	4.1%	possibly_damaging(0.54)	deleterious(0.04)	deleterious(0.532)	HMMPfam_NMT_C,superfamily_Acyl-CoA N-acyltransferases (Nat)
ARHGAP27	201176	genome.wustl.edu	37	17	43481968	43481968	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_199282.2	-1	validated	p.Q102P	1.000	31	0%	17	35.3%	2	0%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMSmart_SM00456
C17orf57	124989	genome.wustl.edu	37	17	45479510	45479510	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_152347.3	+1	provisional	p.V653E	0.212	77	0%	68	36.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	superfamily_EF-hand
ACE	1636	genome.wustl.edu	37	17	61560399	61560399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000789.2	+1	reviewed	p.I451T	1.000	102	0%	41	24.4%	4	25%	benign(0.049)	deleterious(0.02)	neutral(0.386)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
CSHL1	1444	genome.wustl.edu	37	17	61987683	61987683	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_022579.1	-1	reviewed	p.L104	0.371	105	0%	54	16.7%	0	-	-	-	-	HMMPfam_Hormone_1,superfamily_4-helical cytokines
CDC42EP4	23580	genome.wustl.edu	37	17	71282169	71282169	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_012121.4	-1	reviewed	p.A157	0.000	65	0%	33	18.2%	37	24.3%	-	-	-	NULL
SRP68	6730	genome.wustl.edu	37	17	74068540	74068540	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014230.2	-1	reviewed	p.G11	0.614	5	0.000	15	0.333	0	-	-	-	-	NULL
SEC14L1	6397	genome.wustl.edu	37	17	75190787	75190787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001039573.2	+1	reviewed	p.R168H	0.175	142	0%	115	19.1%	48	2%	benign(0.003)	tolerated(0.06)	neutral(0.323)	HMMPfam_PRELI
SEPT9	10801	genome.wustl.edu	37	17	75398442	75398442	+	Silent	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001113491.1	+1	reviewed	p.G126	0.983	19	0%	18	27.8%	109	13.7%	-	-	-	NULL
RALBP1	10928	genome.wustl.edu	37	18	9524624	9524624	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006788.3	+1	validated	p.T362	0.964	67	0%	41	34.1%	16	37.5%	-	-	-	HMMSmart_RhoGAP,superfamily_Rho_GAP
MOCOS	55034	genome.wustl.edu	37	18	33846761	33846761	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_017947.2	+1	validated	p.T820N	0.999	79	0%	74	39.2%	8	75%	possibly_damaging(0.602)	deleterious(0.01)	deleterious(0.614)	HMMPfam_MOSC,superfamily_PK beta-barrel domain-like
MEX3C	51320	genome.wustl.edu	37	18	48702835	48702835	+	Silent	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_016626.4	-1	reviewed	p.P622	1.000	265	0%	226	39.8%	21	14.2%	-	-	-	HMMSmart_RING,HMMPfam_zf-C3HC4,superfamily_SSF57850
CDH7	1005	genome.wustl.edu	37	18	63489473	63489473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004361.2	+1	reviewed	p.R261H	1.000	197	0%	150	46%	0	-	possibly_damaging(0.473)	tolerated(0.09)	neutral(0.453)	superfamily_Cadherin-like
CYP4F22	126410	genome.wustl.edu	37	19	15651365	15651365	+	Missense_Mutation	SNP	C	C	T	rs188702643	by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_173483.3	+1	reviewed	p.A259V	0.003	97	0%	90	11.1%	0	-	benign(0.286)	deleterious(0.01)	deleterious(0.494)	HMMPfam_p450,superfamily_Cytochrome_P450
DDX49	54555	genome.wustl.edu	37	19	19032667	19032667	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_019070.4	+1	validated	p.A114V	0.993	40	0%	33	12.1%	55	10.9%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_DEAD,HMMSmart_DEXDc,superfamily_SSF52540
ZNF536	9745	genome.wustl.edu	37	19	31039268	31039268	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014717.1	+1	provisional	p.F914	1.000	251	0%	176	38.6%	0	-	-	-	-	NULL
TSHZ3	57616	genome.wustl.edu	37	19	31768041	31768041	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020856.2	-1	validated	p.T886	0.197	56	0%	36	33.3%	2	0%	-	-	-	superfamily_Homeodomain_like
KIAA0355	9710	genome.wustl.edu	37	19	34791421	34791421	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014686.3	+1	validated	p.R15W	1.000	63	0%	43	34.9%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ALKBH6	84964	genome.wustl.edu	37	19	36503972	36503974	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	TAG	TAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_032878.3	-1	validated	p.Y53in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
WDR62	284403	genome.wustl.edu	37	19	36558745	36558745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001083961.1	+1	validated	p.P239S	1.000	33	0%	26	23.1%	2	0%	possibly_damaging(0.926)	deleterious(0.01)	deleterious(0.780)	superfamily_WD40 repeat-like
RYR1	6261	genome.wustl.edu	37	19	38954151	38954151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000540.2	+1	reviewed	p.G889D	1.000	42	0%	33	15.2%	0	-	probably_damaging(1)	-	-	HMMPfam_RyR
RYR1	6261	genome.wustl.edu	37	19	39002727	39002727	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000540.2	+1	reviewed	p.A3063V	0.995	72	0%	28	21.4%	0	-	possibly_damaging(0.546)	-	-	NULL
PPP1R15A	23645	genome.wustl.edu	37	19	49379123	49379134	+	In_Frame_Del	DEL	CCTTCGTCCCCA	CCTTCGTCCCCA	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	CCTTCGTCCCCA	CCTTCGTCCCCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_014330.3	+1	validated	p.PSSP640in_frame_del	0.001:0.002:0.001:0.001:0.000:0.000:0.000:0.000:0.001:0.002:0.002:0.000	-	-	-	-	-	-	-	-	-	NULL
TRPM4	54795	genome.wustl.edu	37	19	49713495	49713495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_017636.2	+1	provisional	p.S1054N	1.000	67	0%	66	18.2%	131	21.3%	probably_damaging(0.987)	tolerated(0.64)	neutral(0.440)	NULL
CD37	951	genome.wustl.edu	37	19	49843516	49843516	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001774.2	+1	reviewed	p.F259	1.000	64	0%	67	14.9%	27	0%	-	-	-	HMMPfam_Tetraspannin
MYBPC2	4606	genome.wustl.edu	37	19	50957351	50957351	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004533.3	+1	validated	p.A608	0.002	35	0%	33	12.1%	6	0%	-	-	-	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
ENSG00000171101	0	genome.wustl.edu	37	19	51671578	51671578	+	Silent	SNP	C	C	T	rs180764299	by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000341811	+1	known	p.P193	0.001	98	1%	44	40.9%	0	-	-	-	-	superfamily_SSF48726
CEACAM18	729767	genome.wustl.edu	37	19	51983768	51983768	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001080405.1	+1	provisional	p.P139	0.000	46	0%	63	39.7%	0	-	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
SIGLEC12	89858	genome.wustl.edu	37	19	52001407	52001407	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_053003.2	-1	reviewed	p.Q424*	0.000	90	0%	56	37.5%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZCCHC3	85364	genome.wustl.edu	37	20	279029	279029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000382352	+1	known	p.E268*	1.000	63	0%	52	11.5%	35	20%	-	-	-	NULL
TGM3	7053	genome.wustl.edu	37	20	2290954	2290954	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003245.3	+1	reviewed	p.A104	0.938	238	0%	191	13.1%	2	0%	-	-	-	HMMPfam_Transglut_N,superfamily_E set domains
JAG1	182	genome.wustl.edu	37	20	10633170	10633170	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_000214.2	-1	reviewed	p.E278*	1.000	29	0%	23	43.5%	7	0%	-	-	-	HMMSmart_EGF
FOXA2	3170	genome.wustl.edu	37	20	22563381	22563402	+	Frame_Shift_Del	DEL	GCGGCTTTGCGTGCGTGTAGCT	GCGGCTTTGCGTGCGTGTAGCT	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	GCGGCTTTGCGTGCGTGTAGCT	GCGGCTTTGCGTGCGTGTAGCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_021784.4	-1	reviewed	p.S160fs	1.000:0.903:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Fork_head_N
NINL	22981	genome.wustl.edu	37	20	25481579	25481579	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_025176.4	-1	validated	p.R310H	0.352	39	0%	25	52%	7	28.5%	benign(0.276)	tolerated(0.12)	neutral(0.290)	NULL
XKR7	343702	genome.wustl.edu	37	20	30585106	30585106	+	Missense_Mutation	SNP	G	G	A	rs187823882	by1000genomes	TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001011718.1	+1	provisional	p.R529H	0.925	55	0%	27	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MYH7B	57644	genome.wustl.edu	37	20	33567219	33567219	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_020884.3	+1	reviewed	p.E82fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Myosin_N
ADIG	149685	genome.wustl.edu	37	20	37209951	37209951	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001018082.1	+1	validated	p.W20R	0.997	98	0%	54	44.4%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
KCNG1	3755	genome.wustl.edu	37	20	49626862	49626862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002237.3	-1	reviewed	p.P5L	1.000	34	0%	24	45.8%	8	37.5%	possibly_damaging(0.818)	deleterious(0.02)	deleterious(0.692)	NULL
IFNGR2	3460	genome.wustl.edu	37	21	34793829	34793829	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005534.3	+1	reviewed	p.G83	0.000	129	0%	114	28.9%	128	21%	-	-	-	superfamily_Fibronectin type III
PCNT	5116	genome.wustl.edu	37	21	47836133	47836133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006031.5	+1	reviewed	p.A2101T	0.002	71	0%	43	14%	4	0%	possibly_damaging(0.67)	tolerated(0.15)	deleterious(0.478)	NULL
HIRA	7290	genome.wustl.edu	37	22	19365551	19365551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003325.3	-1	reviewed	p.S485L	1.000	98	0%	49	20.4%	11	27.2%	benign(0.001)	tolerated(0.24)	neutral(0.037)	NULL
ENSG00000211459	0	genome.wustl.edu	37	MT	1200	1200	+	RNA	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000389680	+1	known	NULL	NULL	16	0%	18	94.4%	1109	86.1%	-	-	-	-
ZBED1	9189	genome.wustl.edu	37	X	2408658	2408658	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004729.3	-1	reviewed	p.A35T	1.000	100	0%	69	30.4%	27	37%	benign(0.195)	tolerated(0.34)	neutral(0.041)	HMMPfam_zf-BED,HMMSmart_ZnF_BED
DCAF8L2	347442	genome.wustl.edu	37	X	27765978	27765978	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001136533.1	+1	provisional	p.H322	0.999	83	0%	105	17.1%	0	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
MAGEB10	139422	genome.wustl.edu	37	X	27840126	27840126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_182506.3	+1	reviewed	p.G235R	0.007	94	0%	81	54.3%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	HMMPfam_MAGE
PPP1R3F	89801	genome.wustl.edu	37	X	49137915	49137915	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_033215.4	+1	reviewed	p.F351V	0.002	63	0%	43	18.6%	44	11.3%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
AKAP4	8852	genome.wustl.edu	37	X	49958224	49958224	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_003886.2	-1	reviewed	p.S380	0.966	237	0%	189	38.6%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
NUDT10	170685	genome.wustl.edu	37	X	51076095	51076095	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000356450	+1	known	p.T93M	1.000	222	0%	126	34.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NUDIX,superfamily_Nudix
ITGB1BP2	26548	genome.wustl.edu	37	X	70523534	70523534	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_012278.1	+1	provisional	p.R176*	0.952	186	0%	142	51.4%	0	-	-	-	-	HMMPfam_CHORD
TAF1	6872	genome.wustl.edu	37	X	70613299	70613299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_004606.3	+1	reviewed	p.C1087F	1.000	208	0%	130	36.9%	8	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PHKA1	5255	genome.wustl.edu	37	X	71933701	71933701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_002637.3	-1	reviewed	p.R10W	0.996	83	0%	62	46.8%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases
LPAR4	2846	genome.wustl.edu	37	X	78010457	78010457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_005296.2	+1	reviewed	p.C31R	1.000	416	0.2%	368	47%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
DIAPH2	1730	genome.wustl.edu	37	X	96212988	96212988	+	Silent	SNP	A	A	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_006729.4	+1	reviewed	p.P592	0.992	77	0%	53	26.4%	2	0%	-	-	-	NULL
COL4A6	1288	genome.wustl.edu	37	X	107408207	107408207	+	Silent	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001847.2	-1	reviewed	p.T1291	0.682	57	0%	30	50%	1	0%	-	-	-	HMMPfam_Collagen
AKAP14	158798	genome.wustl.edu	37	X	119054555	119054555	+	Silent	SNP	A	A	G	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_178813.5	+1	reviewed	p.L193	0.008	106	0%	127	35.4%	6	100%	-	-	-	NULL
GLUD2	2747	genome.wustl.edu	37	X	120181778	120181778	+	Silent	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_012084.3	+1	reviewed	p.I80	0.998	46	0%	35	54.3%	1	0%	-	-	-	superfamily_SSF53223
GRIA3	2892	genome.wustl.edu	37	X	122599629	122599629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	ENST00000264357	+1	known	p.G810V	1.000	124	0%	123	46.3%	0	-	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_Lig_chan
DCAF12L2	340578	genome.wustl.edu	37	X	125299369	125299369	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001013628.2	-1	reviewed	p.P180R	1.000	50	0%	34	32.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40_like
ENOX2	10495	genome.wustl.edu	37	X	129837115	129837115	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_182314.1	-1	reviewed	p.A55T	1.000	224	0%	208	34.1%	5	0%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
DDX26B	203522	genome.wustl.edu	37	X	134713749	134713749	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_182540.4	+1	validated	p.M682T	0.947	268	0%	217	41%	4	0%	benign(0)	tolerated(0.5)	neutral(0.010)	NULL
CD99L2	83692	genome.wustl.edu	37	X	149937520	149937520	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_031462.3	-1	reviewed	p.P259Q	0.000	36	0%	14	50%	19	0%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
VMA21	203547	genome.wustl.edu	37	X	150573426	150573426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001017980.3	+1	reviewed	p.A68T	1.000	150	0%	96	42.7%	19	0%	possibly_damaging(0.799)	deleterious(0.02)	deleterious(0.684)	HMMPfam_VMA21
ZNF275	10838	genome.wustl.edu	37	X	152612474	152612474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_001080485.2	+1	validated	p.R111W	0.251	154	0%	107	36.4%	0	-	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
FUNDC2	65991	genome.wustl.edu	37	X	154282910	154282910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A5-A0G9-01A-11W-A062-09	TCGA-A5-A0G9-10A-01W-A062-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	9b47e36f-34de-40a4-bb45-505c7c2dede7	cac37549-d384-4344-8658-fdfb56dd7524	NM_023934.3	+1	validated	p.G178E	1.000	458	0%	445	30.6%	68	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_FUN14
