Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
PARP9	83666	hgsc.bcm.edu	37	3	122247338	122247343	+	In_Frame_Del	DEL	GCCTGC	GCCTGC	-	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	GCCTGC	GCCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	115.0	26.0	149.0	0.0	0.226087	0	.	.	none	.	PARP9	72	.	NM_001146102	exon11	c.2434_2439del	p.812_813del	.	.	PASS	Atlas-Indel
PARP9	83666	hgsc.bcm.edu	37	3	122247346	122247346	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	120.0	28.0	144.0	0.0	0.233333	0	.	.	none	.	PARP9	72	.	NM_001146102	exon11	c.2431delA	p.M811fs	.	.	PASS	Atlas-Indel
DLG5	9231	hgsc.bcm.edu	37	10	79565519	79565520	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	17.0	17.0	0.0	0.0	1.000	.	.	.	none	.	DLG5	154	.	NM_004747	exon27	c.5068_5069insT	p.R1690fs	.	.	PASS	Pindel,Atlas-Indel
ANKRD23	200539	hgsc.bcm.edu	37	2	97507820	97507821	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	20.0	20.0	0.0	0.0	1.000	.	.	.	none	.	ANKRD23	28	.	NM_144994	exon3	c.277_278insC	p.R93fs	.	.	PASS	Pindel,Atlas-Indel
PARP9	83666	hgsc.bcm.edu	37	3	122247336	122247347	+	In_Frame_Del	DEL	TAGCCTGCATGC	TAGCCTGCATGC	-	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	TAGCCTGCATGC	TAGCCTGCATGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	26.0	26.0	0.0	0.0	1.000	.	.	.	none	.	PARP9	72	.	NM_001146102	exon11	c.2430_2441del	p.810_814del	.	.	PASS	Pindel
B3GALTL	145173	hgsc.bcm.edu	37	13	31891810	31891810	+	Missense_Mutation	SNP	C	C	T	rs144117014		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	39.0	14.0	63.0	0.0	0.358974	0	C|1.000;T|0.000	0.000	weak	.	B3GALTL	48	.	NM_194318	exon13	c.C1172T	p.T391M	ACATCACGGGAGG	.	PASS	Atlas-SNP
MFSD6	54842	hgsc.bcm.edu	37	2	191300917	191300917	+	Silent	SNP	A	A	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	188.0	84.0	168.0	0.0	0.446809	0	.	.	none	.	MFSD6	58	.	NM_017694	exon3	c.A162C	p.I54I	GGAAATAGACTGG	.	PASS	Atlas-SNP
SMYD1	150572	hgsc.bcm.edu	37	2	88387391	88387391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	142.0	48.0	148.0	0.0	0.338028	0	.	.	none	.	SMYD1	95	.	NM_198274	exon3	c.C325T	p.R109C	GCGGCGCGCATCA	.	PASS	Atlas-SNP
SOCS3	9021	hgsc.bcm.edu	37	17	76354835	76354835	+	Silent	SNP	C	C	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	64.0	34.0	79.0	0.0	0.53125	0	.	.	none	.	SOCS3	16	.	NM_003955	exon2	c.G342T	p.V114V	GCGGGGCACGGGC	.	PASS	Atlas-SNP
ZCWPW2	152098	hgsc.bcm.edu	37	3	28476649	28476649	+	Silent	SNP	T	T	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	363.0	129.0	364.0	1.0	0.355372	0.00274725	.	.	none	.	ZCWPW2	49	.	NM_001040432	exon3	c.T381G	p.T127T	TGTAACTTATGAC	.	PASS	Atlas-SNP
DMBT1	1755	hgsc.bcm.edu	37	10	124352028	124352028	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	15.0	14.0	25.0	0.0	0.933333	0	.	.	none	.	DMBT1	677	.	NM_007329	exon20	c.A2417G	p.E806G	GACACGAGTCCTA	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	41414420	41414420	+	Missense_Mutation	SNP	G	G	A	rs200410460	bycluster	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	81.0	31.0	67.0	0.0	0.382716	0	.	.	weak	.	DSCAM	347	.	NM_001271534	exon32	c.C5564T	p.T1855M	CTGTCCGTGTACT	.	PASS	Atlas-SNP
ZNF782	158431	hgsc.bcm.edu	37	9	99581542	99581542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	79.0	22.0	67.0	0.0	0.278481	0	.	.	none	.	ZNF782	64	.	NM_001001662	exon6	c.A763G	p.K255E	TTGATTTATCATA	.	PASS	Atlas-SNP
MUC16	94025	hgsc.bcm.edu	37	19	9047271	9047271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	81.0	31.0	76.0	0.0	0.382716	0	.	.	none	.	MUC16	4315	.	NM_024690	exon5	c.C34360T	p.P11454S	CACCAGGGGAGAC	.	PASS	Atlas-SNP
VPS13D	55187	hgsc.bcm.edu	37	1	12387807	12387807	+	Missense_Mutation	SNP	C	C	T	rs143572864	bycluster	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	120.0	51.0	127.0	0.0	0.425	0	C|1.000;T|0.000	0.000	weak	VPS13D,NS,carcinoma,+1,1	VPS13D	316	1	NM_015378	exon36	c.C8093T	p.A2698V	TGGCAGCGCCATT	.	PASS	Atlas-SNP
PSG3	5671	hgsc.bcm.edu	37	19	43234049	43234049	+	Missense_Mutation	SNP	A	A	T	rs28698193	bycluster;byfrequency;by1000genomes	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	53.0	5.0	54.0	0.0	0.0943396	0	A|0.879;T|0.121	0.121	strong	.	PSG3	82	.	NM_021016	exon4	c.T869A	p.I290N	TTTTCAATGGGTC	.	PASS	Atlas-SNP
ADCYAP1R1	117	hgsc.bcm.edu	37	7	31132339	31132339	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	41.0	27.0	49.0	0.0	0.658537	0	.	.	none	.	ADCYAP1R1	78	.	NM_001118	exon13	c.A1036G	p.S346G	GAGTCCAGCATCT	.	PASS	Atlas-SNP
ABCC6	368	hgsc.bcm.edu	37	16	16248757	16248757	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	93.0	33.0	98.0	0.0	0.354839	0	.	.	none	.	ABCC6	110	.	NM_001171	exon28	c.G4014A	p.L1338L	GGAGCGCAGTGTG	.	PASS	Atlas-SNP
MOCS3	27304	hgsc.bcm.edu	37	20	49575721	49575721	+	Silent	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	52.0	17.0	59.0	0.0	0.326923	0	.	.	none	.	MOCS3	44	.	NM_014484	exon1	c.T342C	p.Y114Y	GGACTATGACGTG	.	PASS	Atlas-SNP
CYP26C1	340665	hgsc.bcm.edu	37	10	94824263	94824263	+	Silent	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	97.0	5.0	129.0	0.0	0.0515464	0	.	.	none	.	CYP26C1	25	.	NM_183374	exon4	c.G831T	p.L277L	GGAGCTGGGCCAT	.	PASS	Atlas-SNP
ME3	10873	hgsc.bcm.edu	37	11	86198437	86198437	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	92.0	58.0	82.0	0.0	0.630435	0	.	.	none	.	ME3	70	.	NM_006680	exon7	c.G751A	p.V251M	CGTGCACGCGCTG	.	PASS	Atlas-SNP
CSGALNACT2	55454	hgsc.bcm.edu	37	10	43659419	43659419	+	Missense_Mutation	SNP	G	G	T	rs79064394	bycluster	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	126.0	6.0	162.0	1.0	0.047619	0.00617284	.	.	weak	CSGALNACT2,NS,carcinoma,0,5	CSGALNACT2	67	5	NM_018590	exon5	c.G1086T	p.L362F	GGTCTTGATGTTT	.	scavenged	Atlas-SNP
KCNH1	3756	hgsc.bcm.edu	37	1	211256200	211256200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	43.0	18.0	49.0	0.0	0.418605	0	.	.	none	KCNH1,NS,carcinoma,0,1	KCNH1	199	1	NM_172362	exon5	c.C480A	p.S160R	CCTGCTGCTTGTC	.	PASS	Atlas-SNP
GPR156	165829	hgsc.bcm.edu	37	3	119892302	119892302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	109.0	36.0	119.0	0.0	0.330275	0	.	.	none	GPR156,rectum,carcinoma,0,1	GPR156	85	1	NM_153002	exon8	c.G949T	p.A317S	CAAATGCCTTCCA	.	PASS	Atlas-SNP
CSNK2B	1460	hgsc.bcm.edu	37	6	31637636	31637636	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	23.0	11.0	38.0	0.0	0.478261	0	.	.	none	.	CSNK2B	15	.	NM_001320	exon7	c.C581T	p.P194L	TCCATCCGATGGC	.	PASS	Atlas-SNP
BBS12	166379	hgsc.bcm.edu	37	4	123664881	123664881	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	91.0	5.0	94.0	0.0	0.0549451	0	.	.	none	.	BBS12	63	.	NM_001178007	exon3	c.G1834T	p.E612X	TCATCAGAATTTG	.	PASS	Atlas-SNP
C10orf90	118611	hgsc.bcm.edu	37	10	128193433	128193433	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	98.0	39.0	115.0	0.0	0.397959	0	.	.	none	C10orf90,NS,carcinoma,-1,1	C10orf90	121	1	NM_001004298	exon3	c.G336A	p.P112P	ATCTGACGGTGCC	.	PASS	Atlas-SNP
CACNA2D1	781	hgsc.bcm.edu	37	7	81601100	81601100	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	330.0	70.0	259.0	0.0	0.212121	0	.	.	none	.	CACNA2D1	191	.	NM_000722	exon26	c.A2134G	p.K712E	TATTTTTCTGCTT	.	PASS	Atlas-SNP
GBA	2629	hgsc.bcm.edu	37	1	155207245	155207245	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	160.0	49.0	221.0	0.0	0.30625	0	.	.	none	GBA,NS,carcinoma,+1,1	GBA	46	1	NM_001005742	exon8	c.C886T	p.R296X	AGTCTCGCTGATG	.	PASS	Atlas-SNP
ADCYAP1R1	117	hgsc.bcm.edu	37	7	31132340	31132340	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	40.0	27.0	48.0	0.0	0.675	0	.	.	none	.	ADCYAP1R1	78	.	NM_001118	exon13	c.G1037C	p.S346T	AGTCCAGCATCTA	.	PASS	Atlas-SNP
BCL11B	64919	hgsc.bcm.edu	37	14	99642463	99642463	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	43.0	14.0	35.0	0.0	0.325581	0	.	.	none	.	BCL11B	108	.	NM_138576	exon4	c.T710C	p.L237P	TGCTGCAGCAGGA	.	PASS	Atlas-SNP
ZNF503	84858	hgsc.bcm.edu	37	10	77161102	77161102	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	18.0	9.0	31.0	0.0	0.5	0	.	.	none	.	ZNF503	25	.	NM_032772	exon1	c.G76A	p.G26S	CACCGCCGCCTCC	.	PASS	Atlas-SNP
SLC22A23	63027	hgsc.bcm.edu	37	6	3284179	3284179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	83.0	37.0	96.0	1.0	0.445783	0.0104167	.	.	none	SLC22A23_ENST00000406686,NS,carcinoma,-1,2	SLC22A23	89	2	NM_015482	exon9	c.C1610T	p.S537F	GCGATGGAAAATT	.	scavenged	Atlas-SNP
SARDH	1757	hgsc.bcm.edu	37	9	136577806	136577806	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	24.0	11.0	34.0	0.0	0.458333	0	.	.	none	.	SARDH	112	.	NM_007101	exon10	c.G1263A	p.G421G	CTCCTGCCCACAG	.	PASS	Atlas-SNP
PRR23C	389152	hgsc.bcm.edu	37	3	138762875	138762875	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	94.0	39.0	111.0	0.0	0.414894	0	.	.	none	.	PRR23C	31	.	NM_001134657	exon1	c.G588A	p.G196G	ACAGGGCCCTCGG	.	PASS	Atlas-SNP
VCAN	1462	hgsc.bcm.edu	37	5	82834316	82834316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	89.0	34.0	122.0	0.0	0.382022	0	.	.	none	.	VCAN	498	.	NM_004385	exon8	c.T5494C	p.F1832L	TCTGTCTTTATGG	.	PASS	Atlas-SNP
TLR2	7097	hgsc.bcm.edu	37	4	154625039	154625039	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	109.0	41.0	99.0	0.0	0.376147	0	.	.	none	TLR2,NS,lymphoid_neoplasm,0,3	TLR2	84	3	NM_003264	exon3	c.A980T	p.D327V	TTTATGATCTGAG	.	PASS	Atlas-SNP
RABL5	64792	hgsc.bcm.edu	37	7	100958542	100958542	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	99.0	36.0	90.0	0.0	0.363636	0	.	.	none	.	RABL5	15	.	NM_022777	exon5	c.A431C	p.K144T	ACCAGCTTCAGCT	.	PASS	Atlas-SNP
LPPR1	0	hgsc.bcm.edu	37	9	104079734	104079734	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	134.0	41.0	108.0	0.0	0.30597	0	.	.	none	.	.	.	.	NM_207299	exon7	c.G901T	p.A301S	CTAATGGCTTTCC	.	PASS	Atlas-SNP
AATK	9625	hgsc.bcm.edu	37	17	79098602	79098602	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	92.0	5.0	146.0	0.0	0.0543478	0	.	.	none	.	AATK	102	.	NM_001080395	exon9	c.G887A	p.W296X	GCGATCCAGCGCA	.	PASS	Atlas-SNP
RPAP1	26015	hgsc.bcm.edu	37	15	41826971	41826971	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	43.0	15.0	58.0	0.0	0.348837	0	.	.	none	.	RPAP1	111	.	NM_015540	exon6	c.T704C	p.L235P	GCCTGCAGTCTTG	.	PASS	Atlas-SNP
MYC	4609	hgsc.bcm.edu	37	8	128750844	128750844	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	90.0	36.0	118.0	0.0	0.4	0	.	.	none	.	MYC	168	.	NM_002467	exon2	c.C381T	p.N127N	GGTGAACCAGAGT	.	PASS	Atlas-SNP
C5orf47	133491	hgsc.bcm.edu	37	5	173416306	173416306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	77.0	29.0	67.0	0.0	0.376623	0	.	.	none	.	C5orf47	14	.	NM_001144954	exon1	c.C40T	p.R14C	TCGGCGCGCTTCG	.	PASS	Atlas-SNP
RECQL5	9400	hgsc.bcm.edu	37	17	73654377	73654377	+	Splice_Site	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	55.0	18.0	60.0	0.0	0.327273	0	.	.	none	.	RECQL5	77	.	NM_004259	exon8	c.1149+1G>A	.	GCCTTACCTGGAG	.	PASS	Atlas-SNP
NCOA3	8202	hgsc.bcm.edu	37	20	46279884	46279884	+	Silent	SNP	A	A	G	rs112355546		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	61.0	4.0	68.0	0.0	0.0655738	0	A|0.500;G|0.500	0.500	weak	.	NCOA3	156	.	NM_181659	exon20	c.A3810G	p.Q1270Q	ACAGCAACAGCAG	.	PASS	Atlas-SNP
AHNAK2	113146	hgsc.bcm.edu	37	14	105412163	105412163	+	Missense_Mutation	SNP	C	C	G	rs201181175	bycluster	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	105.0	6.0	134.0	2.0	0.0571429	0.0149254	.	.	weak	AHNAK2_ENST00000333244,NS,carcinoma,0,1	AHNAK2	719	1	NM_138420	exon7	c.G9625C	p.V3209L	GCTTCACGTCCAC	.	scavenged	Atlas-SNP
TTN	7273	hgsc.bcm.edu	37	2	179400129	179400129	+	Missense_Mutation	SNP	C	C	T	rs192391568	by1000genomes	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	69.0	38.0	67.0	0.0	0.550725	0	C|1.000;T|0.000	0.000	strong	.	TTN	18412	.	NM_001267550	exon358	c.G101213A	p.R33738H	CCTACACGGAGCC	.	PASS	Atlas-SNP
VWCE	220001	hgsc.bcm.edu	37	11	61048187	61048187	+	Silent	SNP	G	G	A	rs375996793		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	67.0	34.0	64.0	0.0	0.507463	0	.	.	weak	.	VWCE	84	.	NM_152718	exon9	c.C1233T	p.D411D	CTTCCCGTCCTAG	.	PASS	Atlas-SNP
CACNA1G	8913	hgsc.bcm.edu	37	17	48674136	48674136	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	37.0	13.0	39.0	0.0	0.351351	0	.	.	none	.	CACNA1G	659	.	NM_001256360	exon16	c.C3110T	p.P1037L	TGCTGCCGCCTCT	.	PASS	Atlas-SNP
SPATA18	132671	hgsc.bcm.edu	37	4	52938302	52938302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	203.0	78.0	203.0	0.0	0.384236	0	.	.	none	SPATA18_ENST00000295213,colon,carcinoma,+2,5	SPATA18	222	5	NM_145263	exon6	c.G738T	p.E246D	TGCTGAGAAAAGT	.	PASS	Atlas-SNP
EPHA5	2044	hgsc.bcm.edu	37	4	66467586	66467586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	110.0	39.0	102.0	0.0	0.354545	0	.	.	none	EPHA5,colon,carcinoma,0,1	EPHA5	315	1	NM_004439	exon3	c.T683C	p.V228A	TAGTATACACGCA	.	PASS	Atlas-SNP
HIST1H2AE	3012	hgsc.bcm.edu	37	6	26217398	26217398	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	124.0	52.0	127.0	0.0	0.419355	0	.	.	none	.	HIST1H2AE	25	.	NM_021052	exon1	c.C196G	p.L66V	TTAGAGCTAGCTG	.	PASS	Atlas-SNP
MEP1A	4224	hgsc.bcm.edu	37	6	46766884	46766884	+	Silent	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	135.0	43.0	139.0	0.0	0.318519	0	.	.	none	.	MEP1A	93	.	NM_005588	exon5	c.G228T	p.T76T	GTGGACGTTCCCC	.	PASS	Atlas-SNP
OR4D5	219875	hgsc.bcm.edu	37	11	123811056	123811056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	139.0	35.0	75.0	0.0	0.251799	0	.	.	none	.	OR4D5	94	.	NM_001001965	exon1	c.G733A	p.A245T	CACATTGCTGTGG	.	PASS	Atlas-SNP
B3GNT8	374907	hgsc.bcm.edu	37	19	41932420	41932420	+	Silent	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	52.0	13.0	53.0	0.0	0.25	0	.	.	none	.	B3GNT8	20	.	NM_198540	exon3	c.C264T	p.S88S	TTCAGTGCTGTCC	.	PASS	Atlas-SNP
ADAMTS3	9508	hgsc.bcm.edu	37	4	73205310	73205310	+	Silent	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	108.0	41.0	88.0	0.0	0.37963	0	.	.	none	.	ADAMTS3	164	.	NM_014243	exon5	c.C762T	p.N254N	GTAATCGTTTTCT	.	PASS	Atlas-SNP
KRT13	3860	hgsc.bcm.edu	37	17	39661359	39661359	+	Silent	SNP	A	A	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	58.0	20.0	75.0	0.0	0.344828	0	.	.	none	.	KRT13	72	.	NM_002274	exon1	c.T444C	p.P148P	CCGCTCAGGGCTA	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274847	203274847	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	95.0	38.0	119.0	0.0	0.4	0	.	.	none	.	BTG2	16	.	NM_006763	exon1	c.T113G	p.F38C	AGGTCTTCAGCGG	.	PASS	Atlas-SNP
BAI3	577	hgsc.bcm.edu	37	6	70042873	70042873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	134.0	41.0	151.0	0.0	0.30597	0	.	.	none	BAI3,NS,carcinoma,+1,2	BAI3	451	2	NM_001704	exon24	c.T3161C	p.L1054P	GAATCCTAGATAA	.	PASS	Atlas-SNP
ANKRD33	341405	hgsc.bcm.edu	37	12	52284586	52284586	+	Missense_Mutation	SNP	C	C	T	rs200291062	bycluster	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	44.0	19.0	42.0	0.0	0.431818	0	.	.	weak	.	ANKRD33	33	.	NM_182608	exon5	c.C856T	p.R286W	CTAGAACGGCTGC	.	PASS	Atlas-SNP
CPXM2	119587	hgsc.bcm.edu	37	10	125557598	125557598	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	100.0	29.0	99.0	0.0	0.29	0	.	.	none	.	CPXM2	120	.	NM_198148	exon6	c.G783A	p.E261E	GGGTAGCTCATTG	.	PASS	Atlas-SNP
PRDM1	639	hgsc.bcm.edu	37	6	106543518	106543518	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	61.0	30.0	123.0	0.0	0.491803	0	.	.	none	.	PRDM1	195	.	NM_001198	exon3	c.T320A	p.I107K	AATACATACCAAA	.	PASS	Atlas-SNP
PFN1	5216	hgsc.bcm.edu	37	17	4851557	4851557	+	Splice_Site	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	23.0	10.0	34.0	0.0	0.434783	0	.	.	none	.	PFN1	6	.	NM_005022	exon2	c.132+1G>A	.	GCAGTACCGTGAT	.	PASS	Atlas-SNP
AMBN	258	hgsc.bcm.edu	37	4	71468348	71468348	+	Missense_Mutation	SNP	G	G	T	rs199556863	bycluster	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	381.0	17.0	303.0	0.0	0.0446194	0	.	.	weak	.	AMBN	73	.	NM_016519	exon7	c.G539T	p.G180V	TCCCAGGAGTAGA	.	PASS	Atlas-SNP
ABCA7	10347	hgsc.bcm.edu	37	19	1046827	1046827	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	23.0	6.0	23.0	0.0	0.26087	0	.	.	none	.	ABCA7	174	.	NM_019112	exon14	c.T1649C	p.L550P	GGTCGCTGCCGCT	.	PASS	Atlas-SNP
SEMA3C	10512	hgsc.bcm.edu	37	7	80433481	80433481	+	Missense_Mutation	SNP	G	G	T	rs143347984		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	147.0	48.0	93.0	0.0	0.326531	0	G|1.000;T|0.000	0.000	weak	.	SEMA3C	106	.	NM_006379	exon8	c.C742A	p.L248M	CAGTCAGTTTTTC	.	PASS	Atlas-SNP
SOX17	64321	hgsc.bcm.edu	37	8	55372347	55372347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	18.0	9.0	32.0	0.0	0.5	0	.	.	none	.	SOX17	37	.	NM_022454	exon2	c.C1037T	p.T346M	ACGGCACGGACCC	.	PASS	Atlas-SNP
TPO	7173	hgsc.bcm.edu	37	2	1459995	1459995	+	Missense_Mutation	SNP	G	G	A	rs371917329		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	96.0	36.0	129.0	0.0	0.375	0	.	.	weak	TPO,NS,carcinoma,-2,1	TPO	224	1	NM_175719	exon7	c.G760A	p.G254R	GCCTTCGGGGGAG	.	PASS	Atlas-SNP
CES5A	221223	hgsc.bcm.edu	37	16	55890347	55890347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	60.0	42.0	48.0	0.0	0.7	0	.	.	none	.	CES5A	206	.	NM_001190158	exon10	c.C1154T	p.P385L	ATCTCAGGAGCCT	.	PASS	Atlas-SNP
INTS3	65123	hgsc.bcm.edu	37	1	153719461	153719461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	100.0	34.0	105.0	0.0	0.34	0	.	.	none	.	INTS3	83	.	NM_023015	exon4	c.G347A	p.R116H	TGAGTCGTGATGG	.	PASS	Atlas-SNP
LGMN	5641	hgsc.bcm.edu	37	14	93171022	93171022	+	Silent	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	125.0	8.0	119.0	0.0	0.064	0	.	.	none	.	LGMN	28	.	NM_005606	exon13	c.C1222T	p.L408L	TGACCAGCACGTA	.	PASS	Atlas-SNP
OPRK1	4986	hgsc.bcm.edu	37	8	54142312	54142312	+	Missense_Mutation	SNP	C	C	T	rs186551684	bycluster;by1000genomes	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	122.0	41.0	125.0	0.0	0.336066	0	C|1.000;T|0.000	0.000	strong	OPRK1,colon,carcinoma,0,1	OPRK1	90	1	NM_000912	exon4	c.G688A	p.V230I	TGAAGACGCAGAT	.	PASS	Atlas-SNP
SLC38A6	145389	hgsc.bcm.edu	37	14	61550378	61550378	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	24.0	15.0	47.0	0.0	0.625	0	.	.	none	.	SLC38A6	87	.	NM_001172702	exon17	c.G1514A	p.R505H	CCAAACGTGTCCA	.	PASS	Atlas-SNP
MGAM	8972	hgsc.bcm.edu	37	7	141756637	141756637	+	Silent	SNP	G	G	A	rs181422456	bycluster;by1000genomes	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	69.0	15.0	58.0	0.0	0.217391	0	G|1.000;A|0.000	0.000	strong	.	MGAM	767	.	NM_004668	exon30	c.G3588A	p.T1196T	TGTGACGTTCCAG	.	PASS	Atlas-SNP
PLEK	5341	hgsc.bcm.edu	37	2	68592512	68592512	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	91.0	25.0	77.0	0.0	0.274725	0	.	.	none	.	PLEK	64	.	NM_002664	exon1	c.A29T	p.Y10F	AGGGCTACCTTGT	.	PASS	Atlas-SNP
HOXD11	3237	hgsc.bcm.edu	37	2	176972104	176972104	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	124.0	34.0	100.0	0.0	0.274194	0	.	.	none	.	HOXD11	26	.	NM_021192	exon1	c.C21T	p.C7C	CGAGTGCGGCCAG	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77690572	77690572	+	Silent	SNP	T	T	C	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	80.0	29.0	74.0	0.0	0.3625	0	.	.	none	.	ZFHX4	878	.	NM_024721	exon4	c.T3222C	p.T1074T	GCAGACTGAGGGC	.	PASS	Atlas-SNP
NWD1	284434	hgsc.bcm.edu	37	19	16860860	16860860	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	82.0	22.0	84.0	0.0	0.268293	0	.	.	none	NWD1_ENST00000524140,NS,neuroblastoma,+2,2	NWD1	303	2	NM_001007525	exon6	c.C1407T	p.C469C	AGCTTGCTCGGGG	.	PASS	Atlas-SNP
CHRNA3	1136	hgsc.bcm.edu	37	15	78894447	78894447	+	Silent	SNP	G	G	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	107.0	38.0	123.0	0.0	0.35514	0	.	.	none	.	CHRNA3	56	.	NM_000743	exon5	c.C537T	p.S179S	GGACCAGGAACCG	.	PASS	Atlas-SNP
KIF1A	547	hgsc.bcm.edu	37	2	241696843	241696843	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	88.0	6.0	84.0	0.0	0.0681818	0	.	.	none	.	KIF1A	152	.	NM_001244008	exon27	c.G2751T	p.E917D	CTCATCCTCCTCC	.	PASS	Atlas-SNP
MYT1	4661	hgsc.bcm.edu	37	20	62839368	62839368	+	Missense_Mutation	SNP	G	G	T	rs369047925	alternate_allele	TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	22.0	4.0	28.0	0.0	0.181818	0	.	.	alt	MYT1,NS,carcinoma,0,1	MYT1	152	1	NM_004535	exon7	c.G819T	p.E273D	GGAGGAGGATGAA	.	scavenged	Atlas-SNP
MOCS3	27304	hgsc.bcm.edu	37	20	49575719	49575719	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	51.0	17.0	62.0	0.0	0.333333	0	.	.	none	.	MOCS3	44	.	NM_014484	exon1	c.T340A	p.Y114N	GTGGACTATGACG	.	PASS	Atlas-SNP
KIAA2018	205717	hgsc.bcm.edu	37	3	113376116	113376116	+	Silent	SNP	C	C	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	28.0	10.0	36.0	0.0	0.357143	0	.	.	none	.	KIAA2018	180	.	NM_001009899	exon7	c.G4413A	p.Q1471Q	TTGCTGCTGCTGC	.	PASS	Atlas-SNP
CD79A	973	hgsc.bcm.edu	37	19	42384803	42384803	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-FA-A4XK-01A-11D-A31X-10	TCGA-FA-A4XK-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	1c24a152-3311-444f-bda2-4612303ddc50	cbaae798-7a40-44d1-b164-ebf0f6a2b8fa	51.0	20.0	78.0	0.0	0.392157	0	.	.	none	.	CD79A	25	.	NM_001783	exon4	c.G565T	p.E189X	CTTTATGAAGTGA	.	PASS	Atlas-SNP
