Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
MTSS1	9788	hgsc.bcm.edu	37	8	125565316	125565318	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	CTC	CTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	220.0	43.0	204.0	0.0	0.195	.	.	.	none	.	MTSS1	79	.	NM_014751	exon14	c.2184_2186del	p.728_729del	.	.	PASS	Pindel,Atlas-Indel
TOX	9760	hgsc.bcm.edu	37	8	59750643	59750643	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83.0	19.0	112.0	0.0	0.229	.	.	.	none	.	TOX	83	.	NM_014729	exon5	c.922delC	p.Q308fs	.	.	PASS	Pindel,Atlas-Indel
MAML3	55534	hgsc.bcm.edu	37	4	140811112	140811123	+	In_Frame_Del	DEL	TGCTGCTGCTGT	TGCTGCTGCTGT	-	rs66794549	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	TGCTGCTGCTGT	TGCTGCTGCTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	120.0	23.0	92.0	0.0	0.191667	0	.	.	alt	.	MAML3	192	.	NM_018717	exon2	c.1468_1479del	p.490_493del	.	.	PASS	Atlas-Indel
CSNK2A1	1457	hgsc.bcm.edu	37	20	470463	470463	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	91.0	18.0	79.0	0.0	0.198	.	.	.	none	.	CSNK2A1	36	.	NM_001895	exon9	c.685delA	p.K229fs	.	.	PASS	Pindel,Atlas-Indel
CYP3A43	64816	hgsc.bcm.edu	37	7	99453289	99453290	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	128.0	31.0	89.0	0.0	0.242188	0	.	.	none	CYP3A43,NS,carcinoma,0,1	CYP3A43	52	1	NM_022820	exon8	c.746_747insA	p.L249fs	.	.	PASS	Atlas-Indel
TNFAIP3	7128	hgsc.bcm.edu	37	6	138200459	138200460	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	91.0	17.0	63.0	0.0	0.186813	0	.	.	none	.	TNFAIP3	340	.	NM_001270508	exon7	c.1876_1877del	p.626_626del	.	.	PASS	Atlas-Indel
NHLRC2	374354	hgsc.bcm.edu	37	10	115636657	115636657	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75.0	13.0	82.0	0.0	0.173333	0	.	.	none	.	NHLRC2	56	.	NM_198514	exon3	c.A709C	p.R237R	ACTGATAGATTGG	.	PASS	Atlas-SNP
NUDT8	254552	hgsc.bcm.edu	37	11	67395800	67395800	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	49.0	12.0	30.0	0.0	0.244898	0	.	.	none	.	NUDT8	12	.	NM_181843	exon3	c.G399A	p.S133S	CTCCTCCGAGTTG	.	PASS	Atlas-SNP
MUC6	4588	hgsc.bcm.edu	37	11	1017576	1017576	+	Missense_Mutation	SNP	G	G	T	rs372353242	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	566.0	48.0	501.0	0.0	0.0848057	0	.	.	alt	MUC6_ENST00000421673,NS,carcinoma,+1,2	MUC6	408	2	NM_005961	exon31	c.C5225A	p.T1742K	TTGGCCGTGCTAA	.	PASS	Atlas-SNP
CDH26	60437	hgsc.bcm.edu	37	20	58569512	58569512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	50.0	10.0	44.0	0.0	0.2	0	.	.	none	CDH26_ENST00000244047,caecum,carcinoma,-1,2	CDH26	229	2	NM_177980	exon11	c.C1634T	p.A545V	GAAATGCGGAGGA	.	PASS	Atlas-SNP
TBX5	6910	hgsc.bcm.edu	37	12	114836488	114836488	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	118.0	51.0	86.0	0.0	0.432203	0	.	.	none	.	TBX5	188	.	NM_000192	exon5	c.C400T	p.R134C	ACAGGCGGCCAGG	.	PASS	Atlas-SNP
C1orf65	164127	hgsc.bcm.edu	37	1	223567173	223567173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	30.0	6.0	29.0	0.0	0.2	0	.	.	none	.	C1orf65	71	.	NM_152610	exon1	c.C356T	p.P119L	CCCGCCCGGCTTG	.	PASS	Atlas-SNP
MSANTD3	91283	hgsc.bcm.edu	37	9	103204249	103204249	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69.0	18.0	58.0	0.0	0.26087	0	.	.	none	.	MSANTD3	10	.	NM_001198805	exon2	c.C29T	p.A10V	AGCCTGCCAAATA	.	PASS	Atlas-SNP
NEGR1	257194	hgsc.bcm.edu	37	1	72400774	72400774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	167.0	33.0	134.0	0.0	0.197605	0	.	.	none	.	NEGR1	60	.	NM_173808	exon2	c.C397A	p.L133I	CAGTTAGATGCAC	.	PASS	Atlas-SNP
ISLR	3671	hgsc.bcm.edu	37	15	74468257	74468257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	53.0	11.0	45.0	0.0	0.207547	0	.	.	none	.	ISLR	49	.	NM_201526	exon2	c.A1058G	p.D353G	GTGAGGACACACT	.	PASS	Atlas-SNP
DUOX1	53905	hgsc.bcm.edu	37	15	45427482	45427482	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	77.0	16.0	59.0	0.0	0.207792	0	.	.	none	.	DUOX1	125	.	NM_017434	exon6	c.G488A	p.R163Q	ATCCCCGGGACCC	.	PASS	Atlas-SNP
USP9X	8239	hgsc.bcm.edu	37	X	41056722	41056722	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	157.0	71.0	155.0	0.0	0.452229	0	.	.	none	.	USP9X	385	.	NM_001039591	exon29	c.T4339A	p.F1447I	AAAAAATTTCATA	.	PASS	Atlas-SNP
CCDC102A	92922	hgsc.bcm.edu	37	16	57562804	57562804	+	Missense_Mutation	SNP	G	G	A	rs12935069	bycluster;byhapmap;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	6.0	6.0	0.0	0.0	1	.	G|0.001;A|0.999	0.999	strong	.	CCDC102A	22	.	NM_033212	exon2	c.C286T	p.R96W	ACCACCGGCGCAT	.	PASS	Atlas-SNP
ANGPTL7	10218	hgsc.bcm.edu	37	1	11253778	11253778	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	55.0	7.0	44.0	0.0	0.127273	0	.	.	none	.	ANGPTL7	23	.	NM_021146	exon3	c.G619A	p.E207K	GGGAACGAACACA	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579421	55579421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	404.0	57.0	407.0	0.0	0.141089	0	.	.	none	.	OR5L1	145	.	NM_001004738	exon1	c.T479C	p.L160S	TTCATTTGTGCTT	.	PASS	Atlas-SNP
SLC45A2	51151	hgsc.bcm.edu	37	5	33964023	33964023	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125.0	23.0	105.0	0.0	0.184	0	.	.	none	.	SLC45A2	100	.	NM_016180	exon3	c.T661G	p.F221V	CAGAGAAGAAGAA	.	PASS	Atlas-SNP
TTC13	79573	hgsc.bcm.edu	37	1	231093993	231093993	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	168.0	27.0	167.0	0.0	0.160714	0	.	.	none	.	TTC13	74	.	NM_001122835	exon3	c.A419G	p.N140S	CTGTCATTATCAG	.	PASS	Atlas-SNP
U2AF1	7307	hgsc.bcm.edu	37	21	44513242	44513242	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	62.0	8.0	61.0	0.0	0.129032	0	.	.	none	U2AF1_ENST00000380276,NS,neuroblastoma,-1,4	U2AF1	322	4	NM_001025203	exon8	c.G693A	p.S231S	ATCTCTCGACCGC	.	PASS	Atlas-SNP
BTG1	694	hgsc.bcm.edu	37	12	92537899	92537899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	146.0	18.0	92.0	0.0	0.123288	0	.	.	none	.	BTG1	30	.	NM_001731	exon2	c.C473T	p.T158M	GGGCTCGTTCTGC	.	PASS	Atlas-SNP
RGL3	57139	hgsc.bcm.edu	37	19	11508197	11508197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	71.0	25.0	51.0	0.0	0.352113	0	.	.	none	RGL3_ENST00000380456,NS,carcinoma,0,2	RGL3	100	2	NM_001161616	exon17	c.C1841T	p.A614V	TGCTGCGCCGGGA	.	PASS	Atlas-SNP
UBN1	29855	hgsc.bcm.edu	37	16	4910954	4910954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	100.0	53.0	67.0	0.0	0.53	0	.	.	none	.	UBN1	88	.	NM_001079514	exon7	c.A961G	p.S321G	CTGCTCAGTGAGT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138332	37138332	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	52.0	19.0	49.0	0.0	0.365385	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.C254G	p.A85G	CCTGCGCCGACAT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23235998	23235998	+	Missense_Mutation	SNP	G	G	A	rs201857114	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	74.0	20.0	66.0	0.0	0.27027	0	.	.	weak	.	IGLL5	26	.	NM_001178126	exon2	c.G325A	p.G109S	GTCCTAGGTAAGT	.	PASS	Atlas-SNP
TSC22D1	8848	hgsc.bcm.edu	37	13	45009000	45009000	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	187.0	57.0	202.0	0.0	0.304813	0	.	.	none	.	TSC22D1	88	.	NM_183422	exon3	c.T2984G	p.L995W	TACATCAAATGGC	.	PASS	Atlas-SNP
RBM38	55544	hgsc.bcm.edu	37	20	55967801	55967801	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125.0	35.0	138.0	0.0	0.28	0	.	.	none	.	RBM38	19	.	NM_183425	exon2	c.A329C	p.Y110S	TGGCATATCTGGG	.	PASS	Atlas-SNP
WAS	7454	hgsc.bcm.edu	37	X	48547156	48547156	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	184.0	95.0	149.0	0.0	0.516304	0	.	.	none	.	WAS	51	.	NM_000377	exon10	c.T1039C	p.L347L	GTACCTTTGGGGA	.	PASS	Atlas-SNP
CASR	846	hgsc.bcm.edu	37	3	122003487	122003487	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	61.0	13.0	65.0	0.0	0.213115	0	.	.	none	CASR,colon,carcinoma,0,1	CASR	190	1	NM_001178065	exon7	c.C2716T	p.R906C	GTCTCCCGCAAGC	.	PASS	Atlas-SNP
ABL1	25	hgsc.bcm.edu	37	9	133729485	133729485	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	116.0	21.0	90.0	0.0	0.181034	0	.	.	none	.	ABL1	1632	.	NM_007313	exon2	c.G171A	p.E57E	CTTTGAGCCTCAG	.	PASS	Atlas-SNP
MESDC2	23184	hgsc.bcm.edu	37	15	81271769	81271769	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	50.0	17.0	62.0	0.0	0.34	0	.	.	none	.	MESDC2	23	.	NM_015154	exon3	c.T496G	p.Y166D	AGGCGTAGCTCCC	.	PASS	Atlas-SNP
RASSF10	644943	hgsc.bcm.edu	37	11	13031220	13031220	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66.0	17.0	80.0	0.0	0.257576	0	.	.	none	.	.	.	.	NM_001080521	exon1	c.C97T	p.R33X	GTTGTGCGAGTGC	.	PASS	Atlas-SNP
C20orf118	140711	hgsc.bcm.edu	37	20	35517718	35517718	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	119.0	5.0	74.0	0.0	0.0420168	0	.	.	none	C20orf118,NS,carcinoma,-2,1	C20orf118	21	1	NM_080628	exon6	c.T577C	p.F193L	CCGACCTTCAACA	.	PASS	Atlas-SNP
ARHGAP21	57584	hgsc.bcm.edu	37	10	24910129	24910129	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	357.0	87.0	304.0	0.0	0.243697	0	.	.	none	ARHGAP21,NS,carcinoma,+1,1	ARHGAP21	185	1	NM_020824	exon9	c.C695G	p.T232S	GTACTGGTTTGCT	.	PASS	Atlas-SNP
ITPR1	3708	hgsc.bcm.edu	37	3	4722294	4722294	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	103.0	26.0	101.0	1.0	0.252427	0.00990099	.	.	none	ITPR1,rectum,carcinoma,0,1	ITPR1	659	1	NM_001099952	exon25	c.C2998T	p.R1000X	TTTAAGCGAGAGT	.	scavenged	Atlas-SNP
CCDC171	203238	hgsc.bcm.edu	37	9	15745534	15745534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	101.0	20.0	93.0	0.0	0.19802	0	.	.	none	.	.	.	.	NM_173550	exon18	c.G2576A	p.R859H	AGTTGCGTTGTTT	.	PASS	Atlas-SNP
UGT2B17	7367	hgsc.bcm.edu	37	4	69433904	69433904	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	366.0	88.0	306.0	0.0	0.240437	0	.	.	none	.	UGT2B17	34	.	NM_001077	exon1	c.G299A	p.S100N	GAAATACTATATG	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230310	23230310	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	107.0	20.0	140.0	0.0	0.186916	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.T77A	p.L26Q	GGCCCCTGCTGCT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138420	37138420	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66.0	26.0	66.0	0.0	0.393939	0	.	.	none	.	PIM1	71	.	NM_001243186	exon1	c.C342T	p.T114T	CGCCACCAAGCTG	.	PASS	Atlas-SNP
DENND3	22898	hgsc.bcm.edu	37	8	142178188	142178188	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	163.0	12.0	146.0	0.0	0.0736196	0	.	.	none	.	DENND3	127	.	NM_014957	exon13	c.C1599T	p.Y533Y	GGCATACCATGCC	.	PASS	Atlas-SNP
OR5M10	390167	hgsc.bcm.edu	37	11	56345100	56345100	+	Missense_Mutation	SNP	G	G	A	rs182443406	bycluster;by1000genomes;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	193.0	54.0	221.0	0.0	0.279793	0	G|0.999;T|0.001	.	alt	.	OR5M10	56	.	NM_001004741	exon1	c.C98T	p.A33V	TAGATCGCCAGGA	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230348	23230348	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	113.0	19.0	135.0	0.0	0.168142	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.C115T	p.L39L	GGCCTGCTGCGCC	.	PASS	Atlas-SNP
ARL13B	200894	hgsc.bcm.edu	37	3	93768309	93768309	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	416.0	92.0	420.0	0.0	0.221154	0	.	.	none	.	ARL13B	52	.	NM_182896	exon8	c.C1084G	p.L362V	GAACCACTTAATA	.	PASS	Atlas-SNP
RPL13	6137	hgsc.bcm.edu	37	16	89629371	89629371	+	Missense_Mutation	SNP	G	G	A	rs139252401		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	148.0	46.0	100.0	0.0	0.310811	0	G|1.000;A|0.000	0.000	weak	.	RPL13	11	.	NM_000977	exon6	c.G557A	p.R186H	TGGCCCGTGCCAA	.	PASS	Atlas-SNP
MYD88	4615	hgsc.bcm.edu	37	3	38182337	38182337	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	96.0	45.0	120.0	0.0	0.46875	0	.	.	none	.	MYD88	900	.	NM_001172569	exon3	c.C592T	p.Q198X	TCTCTCCAGGTAA	.	PASS	Atlas-SNP
GRID2	2895	hgsc.bcm.edu	37	4	94376873	94376873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	184.0	47.0	178.0	0.0	0.255435	0	.	.	none	.	GRID2	233	.	NM_001510	exon11	c.T1606G	p.F536V	GTGGACTTTACGA	.	PASS	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37424900	37424900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	41.0	18.0	58.0	0.0	0.439024	0	.	.	none	.	GRHPR	35	.	NM_012203	exon2	c.G142C	p.G48R	GAGCGAGGTGTGG	.	PASS	Atlas-SNP
CDC42BPG	55561	hgsc.bcm.edu	37	11	64591992	64591992	+	Missense_Mutation	SNP	G	G	A	rs138706676		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	137.0	29.0	134.0	0.0	0.211679	0	G|1.000;A|0.000	0.000	weak	.	CDC42BPG	101	.	NM_017525	exon37	c.C4609T	p.R1537W	GGGGCCGTTCTGA	.	PASS	Atlas-SNP
GGA2	23062	hgsc.bcm.edu	37	16	23521643	23521643	+	Silent	SNP	G	G	C	rs1071685	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	13.0	7.0	5.0	0.0	0.538462	0	G|0.291;C|0.709	0.709	strong	.	GGA2	49	.	NM_015044	exon1	c.C90G	p.L30L	CTCACTGAGCCAC	.	PASS	Atlas-SNP
ETAA1	54465	hgsc.bcm.edu	37	2	67630426	67630426	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	160.0	34.0	171.0	0.0	0.2125	0	.	.	none	.	ETAA1	88	.	NM_019002	exon5	c.G612A	p.E204E	GGAAGAGCTAGAT	.	PASS	Atlas-SNP
DUOX2	50506	hgsc.bcm.edu	37	15	45404810	45404810	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82.0	16.0	90.0	0.0	0.195122	0	.	.	none	.	DUOX2	137	.	NM_014080	exon4	c.G267A	p.T89T	GCCCCGCGTGGCT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230394	23230394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92.0	13.0	126.0	0.0	0.141304	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.C161T	p.A54V	CTGGAGCCTCAGT	.	PASS	Atlas-SNP
OR8B2	26595	hgsc.bcm.edu	37	11	124252524	124252524	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	357.0	69.0	383.0	0.0	0.193277	0	.	.	none	.	OR8B2	42	.	NM_001005468	exon1	c.G716T	p.S239I	CAAGTACTGAAGG	.	PASS	Atlas-SNP
C3orf35	339883	hgsc.bcm.edu	37	3	37458937	37458937	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	145.0	29.0	161.0	0.0	0.2	0	.	.	none	C3orf35,NS,carcinoma,+2,1	C3orf35	21	1	NM_178342	exon5	c.C180T	p.G60G	GCAGGGCAGTGCT	.	PASS	Atlas-SNP
CXCR4	7852	hgsc.bcm.edu	37	2	136873448	136873448	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	126.0	39.0	99.0	0.0	0.309524	0	.	.	none	.	CXCR4	51	.	NM_001008540	exon1	c.G62A	p.G21D	CCTGAGCCCATTT	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230440	23230440	+	Splice_Site	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	61.0	14.0	94.0	0.0	0.229508	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.100+1G>A	.	GGGCAGGTAAGGG	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138946	37138946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	58.0	18.0	59.0	0.0	0.310345	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.G559A	p.V187M	AAGAAGGTGAGCT	.	PASS	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	37	12	108956417	108956417	+	Missense_Mutation	SNP	T	T	G	rs67681514	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	8.0	8.0	0.0	0.0	1	.	GG|0.500;TT|0.500	.	alt	.	ISCU	19	.	NM_213595	exon1	c.T19G	p.F7V	GGGGCTTTCCGTC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230386	23230386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	95.0	14.0	132.0	0.0	0.147368	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.C47T	p.T16I	CCCAGACCCTGGA	.	PASS	Atlas-SNP
HHIP	64399	hgsc.bcm.edu	37	4	145658962	145658962	+	Silent	SNP	G	G	A	rs35379077	bycluster;byfrequency	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	134.0	35.0	132.0	0.0	0.261194	0	G|1.000;A|0.000	0.000	strong	.	HHIP	100	.	NM_022475	exon13	c.G1956A	p.P652P	TAGACCGAACAAG	.	PASS	Atlas-SNP
CACNA1E	777	hgsc.bcm.edu	37	1	181689418	181689418	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	262.0	38.0	293.0	0.0	0.145038	0	.	.	none	.	CACNA1E	778	.	NM_001205293	exon14	c.C1828T	p.L610F	TTCCTCCTCTTCC	.	PASS	Atlas-SNP
ADCK1	57143	hgsc.bcm.edu	37	14	78392248	78392248	+	Nonsense_Mutation	SNP	C	C	T	rs142956948	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92.0	17.0	84.0	1.0	0.184783	0.0119048	C|0.999;T|0.001	0.001	strong	ADCK1,colon,carcinoma,0,1	ADCK1	81	1	NM_020421	exon9	c.C1150T	p.R384X	ACGGCGCGATCGT	.	scavenged	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	12957770	12957770	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	103.0	21.0	83.0	0.0	0.203883	0	.	.	none	.	DLC1	411	.	NM_182643	exon9	c.G2076A	p.L692L	GATGATCAACCCC	.	PASS	Atlas-SNP
TRIM4	89122	hgsc.bcm.edu	37	7	99507230	99507230	+	Missense_Mutation	SNP	C	C	T	rs188783002	bycluster;by1000genomes;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	141.0	25.0	125.0	0.0	0.177305	0	C|1.000;A|0.000	.	alt	.	TRIM4	33	.	NM_033017	exon3	c.G525A	p.M175I	TAAATGCATGACT	.	PASS	Atlas-SNP
PAN2	9924	hgsc.bcm.edu	37	12	56712936	56712936	+	Silent	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	131.0	30.0	97.0	0.0	0.229008	0	.	.	none	.	PAN2	107	.	NM_001127460	exon24	c.C3312G	p.V1104V	CAGGTAGACAGTG	.	PASS	Atlas-SNP
RBFOX1	54715	hgsc.bcm.edu	37	16	7759118	7759118	+	Missense_Mutation	SNP	C	C	T	rs372365163		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	193.0	96.0	155.0	0.0	0.497409	0	.	.	weak	RBFOX1_ENST00000550418,NS,carcinoma,0,3	RBFOX1	341	3	NM_145893	exon13	c.C1172T	p.T391M	CACCTACGGCGTT	.	PASS	Atlas-SNP
CSNK2A3	283106	hgsc.bcm.edu	37	11	11373697	11373697	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	74.0	19.0	69.0	0.0	0.256757	0	.	.	none	.	.	.	.	NM_001256686	exon1	c.T970G	p.F324V	TGTAGAAATAGGG	.	PASS	Atlas-SNP
BCL11A	53335	hgsc.bcm.edu	37	2	60689133	60689133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	54.0	18.0	56.0	0.0	0.333333	0	.	.	none	BCL11A_ENST00000356842,caecum,carcinoma,0,5	BCL11A	298	5	NM_018014	exon4	c.C914T	p.P305L	GCCATTGGATTCA	.	PASS	Atlas-SNP
UPK3B	80761	hgsc.bcm.edu	37	7	76143285	76143285	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	112.0	30.0	85.0	0.0	0.267857	0	.	.	none	.	UPK3B	15	.	NM_182684	exon5	c.A563G	p.D188G	CCATCGACACCTG	.	PASS	Atlas-SNP
POM121L12	285877	hgsc.bcm.edu	37	7	53104001	53104001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	51.0	15.0	54.0	0.0	0.294118	0	.	.	none	POM121L12,NS,carcinoma,-2,1	POM121L12	146	1	NM_182595	exon1	c.C637T	p.R213W	CAGCCCCGGCCCT	.	PASS	Atlas-SNP
AHCYL1	10768	hgsc.bcm.edu	37	1	110561015	110561015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	139.0	32.0	129.0	0.0	0.230216	0	.	.	none	.	AHCYL1	49	.	NM_006621	exon12	c.C1144T	p.R382W	GTGACACGGGAGC	.	PASS	Atlas-SNP
PLK2	10769	hgsc.bcm.edu	37	5	57755718	57755718	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	151.0	29.0	106.0	0.0	0.192053	0	.	.	none	.	PLK2	71	.	NM_006622	exon1	c.C69T	p.G23G	ACCCTTGCCCAGC	.	PASS	Atlas-SNP
ITGAV	3685	hgsc.bcm.edu	37	2	187521026	187521026	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	192.0	36.0	143.0	0.0	0.1875	0	.	.	none	ITGAV,rectum,carcinoma,+2,1	ITGAV	124	1	NM_002210	exon17	c.A1617C	p.R539R	AATTCGACGAGCA	.	PASS	Atlas-SNP
CNTRL	11064	hgsc.bcm.edu	37	9	123922502	123922502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	385.0	89.0	297.0	0.0	0.231169	0	.	.	none	.	CNTRL	161	.	NM_007018	exon30	c.A5011G	p.T1671A	CAACTTACACTTA	.	PASS	Atlas-SNP
ISCU	23479	hgsc.bcm.edu	37	12	108956418	108956418	+	Missense_Mutation	SNP	T	T	G	rs10778648	bycluster;byfrequency;by2hit2allele;byhapmap;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	8.0	8.0	0.0	0.0	1	.	T|0.126;G|0.874	0.874	strong	.	ISCU	19	.	NM_213595	exon1	c.T20G	p.F7C	GGGCTTTCCGTCT	.	PASS	Atlas-SNP
UCKL1	54963	hgsc.bcm.edu	37	20	62576008	62576008	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	132.0	38.0	121.0	0.0	0.287879	0	.	.	none	.	UCKL1	28	.	NM_017859	exon6	c.G734A	p.R245H	CGGCCGCGCTCAC	.	PASS	Atlas-SNP
DNAH5	1767	hgsc.bcm.edu	37	5	13845064	13845064	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82.0	28.0	78.0	1.0	0.341463	0.0128205	.	.	none	DNAH5,scalp,malignant_melanoma,-1,1	DNAH5	868	1	NM_001369	exon32	c.T5153C	p.F1718S	ACGAAGAAAAACC	.	scavenged	Atlas-SNP
TTYH2	94015	hgsc.bcm.edu	37	17	72233625	72233625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	45.0	25.0	37.0	0.0	0.555556	0	.	.	none	.	TTYH2	63	.	NM_032646	exon4	c.G607A	p.D203N	CTATCCGACCAGA	.	PASS	Atlas-SNP
OC90	729330	hgsc.bcm.edu	37	8	133045291	133045291	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64.0	9.0	80.0	0.0	0.140625	0	.	.	none	OC90_ENST00000262283,NS,carcinoma,-1,2	OC90	163	2	NM_001080399	exon11	c.A854G	p.E285G	CCTTTTTCAGTGG	.	PASS	Atlas-SNP
MERTK	10461	hgsc.bcm.edu	37	2	112779062	112779062	+	Silent	SNP	C	C	T	rs149178674		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	88.0	20.0	72.0	0.0	0.227273	0	C|1.000;T|0.000	0.000	weak	MERTK,colon,carcinoma,0,1	MERTK	112	1	NM_006343	exon17	c.C2253T	p.G751G	CAGTGGCGATTAT	.	PASS	Atlas-SNP
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493791	77493791	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46.0	10.0	37.0	0.0	0.217391	0	.	.	none	.	IRF2BPL	40	.	NM_024496	exon1	c.G345A	p.Q115Q	CTGCTGCTGTTGC	.	PASS	Atlas-SNP
SULT1C2	6819	hgsc.bcm.edu	37	2	108917339	108917339	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	113.0	34.0	108.0	0.0	0.300885	0	.	.	none	.	SULT1C2	82	.	NM_001056	exon4	c.C323G	p.T108S	TAAAGACTCACCT	.	PASS	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19494536	19494536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70.0	18.0	79.0	0.0	0.257143	0	.	.	none	.	UBR4	415	.	NM_020765	exon28	c.C3884T	p.T1295I	TCTCCAGTCAACC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139191	37139191	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	90.0	28.0	101.0	0.0	0.311111	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.C804T	p.L268L	CGACCTCAATCGC	.	PASS	Atlas-SNP
TADA2B	93624	hgsc.bcm.edu	37	4	7056150	7056150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	81.0	22.0	101.0	0.0	0.271605	0	.	.	none	TADA2B,rectum,carcinoma,-1,1	TADA2B	29	1	NM_152293	exon2	c.G632A	p.R211Q	ACGTGCGGAAGCT	.	PASS	Atlas-SNP
NAV3	89795	hgsc.bcm.edu	37	12	78571048	78571048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	171.0	68.0	136.0	0.0	0.397661	0	.	.	none	.	NAV3	506	.	NM_014903	exon27	c.G5252T	p.G1751V	ATGCTGGTGACTG	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58978306	58978306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	208.0	57.0	158.0	0.0	0.274038	0	.	.	none	MPEG1,NS,carcinoma,-1,1	MPEG1	72	1	NM_001039396	exon1	c.G2033A	p.G678D	CGGGTGCCGTAGA	.	PASS	Atlas-SNP
SORL1	6653	hgsc.bcm.edu	37	11	121323082	121323082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	55.0	12.0	53.0	0.0	0.218182	0	.	.	none	.	SORL1	218	.	NM_003105	exon1	c.C42A	p.F14L	CCCGTTCCTATTC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23235999	23235999	+	Splice_Site	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75.0	21.0	64.0	0.0	0.28	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon2	c.325+1G>C	.	TCCTAGGTAAGTG	.	PASS	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	37	3	32022601	32022601	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	114.0	32.0	86.0	0.0	0.280702	0	.	.	none	.	OSBPL10	160	.	NM_017784	exon1	c.C71T	p.A24V	GAGGTAGCACGGC	.	PASS	Atlas-SNP
GRM2	2912	hgsc.bcm.edu	37	3	51749480	51749480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	75.0	18.0	57.0	0.0	0.24	0	.	.	none	GRM2,caecum,carcinoma,-1,1	GRM2	91	1	NM_000839	exon4	c.G1691T	p.G564V	GCTGGGGCGATGC	.	PASS	Atlas-SNP
CD79B	974	hgsc.bcm.edu	37	17	62006799	62006799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	77.0	36.0	67.0	1.0	0.467532	0.0149254	.	.	none	CD79B,NS,lymphoid_neoplasm,0,13	CD79B	38	13	NM_001039933	exon5	c.T589C	p.Y197H	CCTCGTAGGTGTG	.	scavenged	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	37	14	31626395	31626395	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	320.0	79.0	194.0	0.0	0.246875	0	.	.	none	.	HECTD1	159	.	NM_015382	exon11	c.C1737A	p.I579I	TGCAGTGATTTCC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138625	37138625	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82.0	42.0	85.0	0.0	0.512195	0	.	.	none	PIM1,NS,carcinoma,+2,2	PIM1	71	2	NM_001243186	exon2	c.C432G	p.Y144X	GGTCTACTCAGGC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138901	37138901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	52.0	28.0	46.0	0.0	0.538462	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.C514A	p.P172T	CTGCAGCCTAATG	.	PASS	Atlas-SNP
MYH8	4626	hgsc.bcm.edu	37	17	10304053	10304053	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	106.0	14.0	74.0	0.0	0.132075	0	.	.	none	.	MYH8	346	.	NM_002472	exon27	c.C3389T	p.A1130V	CGGGACGCCCTCT	.	PASS	Atlas-SNP
FAF1	11124	hgsc.bcm.edu	37	1	51121170	51121170	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83.0	20.0	90.0	0.0	0.240964	0	.	.	none	.	FAF1	64	.	NM_007051	exon8	c.A688T	p.I230F	CGGGGATACTTGT	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138380	37138380	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	65.0	8.0	60.0	0.0	0.123077	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,1	PIM1	71	1	NM_001243186	exon1	c.C302T	p.A101V	CGCTTGCCCACCT	.	scavenged	Atlas-SNP
CHRM3	1131	hgsc.bcm.edu	37	1	240072488	240072488	+	Silent	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	120.0	29.0	106.0	0.0	0.241667	0	.	.	none	.	CHRM3	118	.	NM_000740	exon5	c.C1737A	p.V579V	GTCGGTCATTTTT	.	PASS	Atlas-SNP
KLHL18	23276	hgsc.bcm.edu	37	3	47385186	47385186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	57.0	12.0	55.0	0.0	0.210526	0	.	.	none	.	KLHL18	46	.	NM_025010	exon10	c.G1480A	p.A494T	AGCATTGCCGAGA	.	PASS	Atlas-SNP
GPR149	344758	hgsc.bcm.edu	37	3	154139229	154139229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	134.0	26.0	133.0	0.0	0.19403	0	.	.	none	.	GPR149	134	.	NM_001038705	exon3	c.G1222A	p.G408R	AAATCCCATAACT	.	PASS	Atlas-SNP
ATRNL1	26033	hgsc.bcm.edu	37	10	116931103	116931103	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	202.0	20.0	171.0	0.0	0.0990099	0	.	.	none	.	ATRNL1	219	.	NM_001276282	exon8	c.A1401T	p.L467L	TTCTCTAATAAAA	.	PASS	Atlas-SNP
LIMCH1	22998	hgsc.bcm.edu	37	4	41648713	41648713	+	Missense_Mutation	SNP	C	C	T	rs143733086	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	150.0	8.0	174.0	0.0	0.0533333	0	C|1.000;T|0.000	0.000	strong	LIMCH1_ENST00000503057,NS,carcinoma,0,1	LIMCH1	233	1	NM_014988	exon12	c.C1468T	p.R490W	TACCTGCGGCAAC	.	PASS	Atlas-SNP
OR5D16	390144	hgsc.bcm.edu	37	11	55606497	55606497	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	317.0	70.0	306.0	2.0	0.22082	0.00653595	.	.	none	OR5D16,NS,carcinoma,+2,1	OR5D16	94	1	NM_001005496	exon1	c.A270T	p.E90D	TGTAGAAGATAGA	.	scavenged	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37140867	37140867	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	155.0	80.0	172.0	0.0	0.516129	0	.	.	none	PIM1,trunk,malignant_melanoma,-2,1	PIM1	71	1	NM_001243186	exon5	c.A976T	p.M326L	TATGATATGGTGT	.	PASS	Atlas-SNP
CDH7	1005	hgsc.bcm.edu	37	18	63529970	63529970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	167.0	30.0	114.0	0.0	0.179641	0	.	.	none	.	CDH7	362	.	NM_004361	exon11	c.C1681A	p.P561T	TATCTGCCAATTT	.	PASS	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	37	1	45341357	45341357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125.0	7.0	92.0	0.0	0.056	0	.	.	none	.	EIF2B3	43	.	NM_020365	exon9	c.T986C	p.L329S	GACAGCAATTTGG	.	PASS	Atlas-SNP
IRF4	3662	hgsc.bcm.edu	37	6	393318	393318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	101.0	20.0	68.0	0.0	0.19802	0	.	.	none	.	IRF4	65	.	NM_001195286	exon2	c.C166T	p.H56Y	TGGAAGCACGCGG	.	PASS	Atlas-SNP
HKR1	284459	hgsc.bcm.edu	37	19	37853921	37853921	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	53.0	16.0	43.0	0.0	0.301887	0	.	.	none	.	HKR1	74	.	NM_181786	exon6	c.A1224T	p.S408S	ACATTCAGGAGAG	.	PASS	Atlas-SNP
AMOTL2	51421	hgsc.bcm.edu	37	3	134089710	134089710	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69.0	14.0	51.0	0.0	0.202899	0	.	.	none	.	AMOTL2	52	.	NM_016201	exon2	c.G566A	p.R189H	TGGTTGCGGGCCA	.	PASS	Atlas-SNP
DOCK5	80005	hgsc.bcm.edu	37	8	25181469	25181469	+	Splice_Site	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	79.0	14.0	94.0	0.0	0.177215	0	.	.	none	.	DOCK5	167	.	NM_024940	exon17	c.1719+2T>C	.	ATAAGGTGGTGCT	.	PASS	Atlas-SNP
HEPH	9843	hgsc.bcm.edu	37	X	65480101	65480101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	56.0	30.0	36.0	0.0	0.535714	0	.	.	none	.	HEPH	224	.	NM_138737	exon19	c.A3358G	p.T1120A	TCTCGAACAGGTA	.	PASS	Atlas-SNP
NAA11	84779	hgsc.bcm.edu	37	4	80246356	80246356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	171.0	38.0	196.0	0.0	0.222222	0	.	.	none	.	NAA11	43	.	NM_032693	exon1	c.G676A	p.D226N	TGGAATCCGAGCT	.	PASS	Atlas-SNP
NOX4	50507	hgsc.bcm.edu	37	11	89177362	89177362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	104.0	28.0	103.0	0.0	0.269231	0	.	.	none	NOX4,NS,carcinoma,+1,1	NOX4	101	1	NM_001143836	exon5	c.T388C	p.F130L	CTGAGAAGTTGAG	.	PASS	Atlas-SNP
EPHA3	2042	hgsc.bcm.edu	37	3	89499497	89499497	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	120.0	32.0	103.0	0.0	0.266667	0	.	.	none	EPHA3,NS,carcinoma,0,1	EPHA3	501	1	NM_005233	exon15	c.G2667T	p.K889N	CCTGAAGATCATC	.	PASS	Atlas-SNP
PCSK2	5126	hgsc.bcm.edu	37	20	17240884	17240884	+	Splice_Site	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	50.0	10.0	43.0	0.0	0.2	0	.	.	none	.	PCSK2	112	.	NM_001201528	exon3	c.121-1G>T	.	TCCACAGCTTCCC	.	PASS	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	37	2	167313511	167313511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	187.0	44.0	147.0	0.0	0.235294	0	.	.	none	SCN7A_ENST00000409855,NS,lymphoid_neoplasm,0,2	SCN7A	410	2	NM_002976	exon10	c.A1159G	p.S387G	ACAAACTTGCCAT	.	PASS	Atlas-SNP
DTX1	1840	hgsc.bcm.edu	37	12	113496132	113496132	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	89.0	10.0	71.0	0.0	0.11236	0	.	.	none	.	DTX1	83	.	NM_004416	exon1	c.C135T	p.C45C	CGTGTGCCACCAC	.	PASS	Atlas-SNP
OSBPL10	114884	hgsc.bcm.edu	37	3	32022625	32022625	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	148.0	33.0	113.0	0.0	0.222973	0	.	.	none	.	OSBPL10	160	.	NM_017784	exon1	c.G47C	p.S16T	CTGCTGCTGTTGC	.	PASS	Atlas-SNP
HRNR	388697	hgsc.bcm.edu	37	1	152187485	152187485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	272.0	16.0	261.0	0.0	0.0588235	0	.	.	none	HRNR,trunk,malignant_melanoma,-1,1	HRNR	403	1	NM_001009931	exon3	c.G6620A	p.R2207H	GAAGAACGACCTG	.	scavenged	Atlas-SNP
CCDC166	100130274	hgsc.bcm.edu	37	8	144790043	144790043	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46.0	17.0	24.0	0.0	0.369565	0	.	.	none	.	CCDC166	1	.	NM_001162914	exon1	c.C237T	p.Y79Y	GCTCACGTAGCTG	.	PASS	Atlas-SNP
RAB3D	9545	hgsc.bcm.edu	37	19	11446354	11446354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	71.0	15.0	47.0	0.0	0.211268	0	.	.	none	RAB3D,NS,carcinoma,+1,1	RAB3D	24	1	NM_004283	exon3	c.G334A	p.A112T	GCACAGCGGCAAA	.	PASS	Atlas-SNP
RHOBTB1	9886	hgsc.bcm.edu	37	10	62631996	62631996	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	104.0	24.0	116.0	0.0	0.230769	0	.	.	none	.	RHOBTB1	61	.	NM_014836	exon10	c.A1868C	p.N623T	TTGTAGTTGGTGC	.	PASS	Atlas-SNP
C1QBP	708	hgsc.bcm.edu	37	17	5336352	5336352	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	93.0	24.0	68.0	0.0	0.258065	0	.	.	none	.	C1QBP	12	.	NM_001212	exon6	c.T832G	p.F278V	TGACAAAACTCTT	.	PASS	Atlas-SNP
BTG1	694	hgsc.bcm.edu	37	12	92537992	92537992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	158.0	33.0	93.0	0.0	0.208861	0	.	.	none	.	BTG1	30	.	NM_001731	exon2	c.C380T	p.A127V	GGTGAGGCTTCAT	.	PASS	Atlas-SNP
CACNA1F	778	hgsc.bcm.edu	37	X	49083586	49083586	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	45.0	18.0	41.0	0.0	0.4	0	.	.	none	.	CACNA1F	218	.	NM_001256789	exon9	c.G1122A	p.E374E	GGAGAACTCCCTG	.	PASS	Atlas-SNP
BEND5	79656	hgsc.bcm.edu	37	1	49208438	49208438	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	98.0	7.0	97.0	0.0	0.0714286	0	.	.	none	.	BEND5	93	.	NM_024603	exon4	c.G751A	p.A251T	CAATGGCGGGACC	.	PASS	Atlas-SNP
GIN1	54826	hgsc.bcm.edu	37	5	102442522	102442522	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	492.0	31.0	430.0	0.0	0.0630081	0	.	.	none	.	GIN1	53	.	NM_017676	exon3	c.C231T	p.C77C	TTCATGGCATTCT	.	PASS	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	37	8	17406346	17406346	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	211.0	49.0	165.0	0.0	0.232227	0	.	.	none	.	SLC7A2	157	.	NM_001164771	exon4	c.G812C	p.S271T	CAGCAAGTGCCAG	.	PASS	Atlas-SNP
ATG4C	84938	hgsc.bcm.edu	37	1	63282305	63282305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	142.0	33.0	126.0	0.0	0.232394	0	.	.	none	ATG4C_ENST00000317868,NS,carcinoma,-1,4	ATG4C	96	4	NM_178221	exon4	c.G220A	p.G74R	ATTGCAGGAAATG	.	PASS	Atlas-SNP
SLC28A3	64078	hgsc.bcm.edu	37	9	86917281	86917281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	37.0	10.0	46.0	0.0	0.27027	0	.	.	none	.	SLC28A3	72	.	NM_001199633	exon5	c.G358A	p.A120T	CACAGGCCGAAAT	.	PASS	Atlas-SNP
C15orf43	145645	hgsc.bcm.edu	37	15	45270701	45270701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	498.0	109.0	397.0	0.0	0.218875	0	.	.	none	.	C15orf43	19	.	NM_152448	exon7	c.G538A	p.D180N	TCAATTGATGCCA	.	PASS	Atlas-SNP
HIST1H4K	8362	hgsc.bcm.edu	37	6	27799065	27799065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	341.0	128.0	353.0	1.0	0.375367	0.00283286	.	.	none	.	HIST1H4K	15	.	NM_003541	exon1	c.A241G	p.T81A	TGACCGTCTTGCG	.	PASS	Atlas-SNP
HIST2H2AC	8338	hgsc.bcm.edu	37	1	149858804	149858804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	272.0	68.0	219.0	0.0	0.25	0	.	.	none	HIST2H2AC,NS,carcinoma,-2,3	HIST2H2AC	75	3	NM_003517	exon1	c.C280G	p.L94V	GAGGAACTGAACA	.	PASS	Atlas-SNP
ZNF721	170960	hgsc.bcm.edu	37	4	435533	435533	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	135.0	38.0	111.0	0.0	0.281481	0	.	.	none	.	ZNF721	205	.	NM_133474	exon3	c.T2723C	p.I908T	GCATAAAGATTTG	.	PASS	Atlas-SNP
CCND2	894	hgsc.bcm.edu	37	12	4383227	4383227	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	83.0	21.0	68.0	0.0	0.253012	0	.	.	none	.	CCND2	50	.	NM_001759	exon1	c.G21A	p.E7E	CCACGAGGTGGAC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37138355	37138355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64.0	19.0	65.0	0.0	0.296875	0	.	.	none	PIM1,NS,lymphoid_neoplasm,0,3	PIM1	71	3	NM_001243186	exon1	c.C277T	p.L93F	GGGATGCTCTTGT	.	PASS	Atlas-SNP
HIPK3	10114	hgsc.bcm.edu	37	11	33374879	33374879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	261.0	54.0	242.0	0.0	0.206897	0	.	.	none	.	HIPK3	92	.	NM_005734	exon17	c.C3413T	p.A1138V	TGTTAGCCTCTCC	.	PASS	Atlas-SNP
SLC9B2	133308	hgsc.bcm.edu	37	4	103966055	103966055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	383.0	76.0	358.0	0.0	0.198433	0	.	.	none	NHEDC2,colon,carcinoma,+1,2	.	.	2	NM_178833	exon8	c.C988T	p.R330C	GGTCACGGCTTGG	.	PASS	Atlas-SNP
MCHR1	2847	hgsc.bcm.edu	37	22	41076964	41076964	+	Missense_Mutation	SNP	C	C	T	rs200627010		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	82.0	21.0	77.0	1.0	0.256098	0.012987	.	.	weak	MCHR1,NS,carcinoma,0,1	MCHR1	45	1	NM_005297	exon2	c.C301T	p.R101C	CCTCCTCGCACGG	.	scavenged	Atlas-SNP
KLF4	9314	hgsc.bcm.edu	37	9	110250112	110250112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	39.0	12.0	63.0	0.0	0.307692	0	.	.	none	.	KLF4	106	.	NM_004235	exon3	c.C563T	p.A188V	ATGTCCGCCAGGT	.	PASS	Atlas-SNP
PPYR1	5540	hgsc.bcm.edu	37	10	47086871	47086871	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	228.0	32.0	219.0	1.0	0.140351	0.00456621	.	.	none	PPYR1,NS,carcinoma,-2,1	PPYR1	54	1	NM_005972	exon3	c.T88G	p.F30V	TACAACTTCTCTG	.	scavenged	Atlas-SNP
MAGEB6	158809	hgsc.bcm.edu	37	X	26212458	26212458	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	65.0	30.0	73.0	0.0	0.461538	0	.	.	none	.	MAGEB6	91	.	NM_173523	exon2	c.A495T	p.K165N	CTCAAAATATGAT	.	PASS	Atlas-SNP
ZNF208	7757	hgsc.bcm.edu	37	19	22157027	22157027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	97.0	5.0	58.0	0.0	0.0515464	0	.	.	none	.	ZNF208	817	.	NM_007153	exon4	c.C809A	p.A270E	AGGATTGCAGATT	.	PASS	Atlas-SNP
ZNF141	7700	hgsc.bcm.edu	37	4	367062	367062	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	118.0	24.0	104.0	0.0	0.20339	0	.	.	none	.	ZNF141	48	.	NM_003441	exon4	c.G836A	p.G279E	ATGCTGGAGAGAA	.	PASS	Atlas-SNP
AIDA	64853	hgsc.bcm.edu	37	1	222885628	222885628	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	175.0	35.0	168.0	0.0	0.2	0	.	.	none	.	AIDA	23	.	NM_022831	exon1	c.G32A	p.R11H	CCCCAGCGCTGCA	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230419	23230419	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	81.0	24.0	111.0	0.0	0.296296	0	.	.	none	.	IGLL5	26	.	NM_001256296	exon1	c.C80T	p.A27V	ATCCAGCCTGCGG	.	PASS	Atlas-SNP
ACTG1	71	hgsc.bcm.edu	37	17	79478964	79478964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	154.0	7.0	131.0	0.0	0.0454545	0	.	.	none	.	ACTG1	55	.	NM_001614	exon3	c.C328G	p.L110V	GGTTCAGGGGGGC	.	PASS	Atlas-SNP
DSG3	1830	hgsc.bcm.edu	37	18	29052745	29052745	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	186.0	40.0	156.0	0.0	0.215054	0	.	.	none	.	DSG3	172	.	NM_001944	exon14	c.A2095G	p.S699G	ATGGAAAGTTCTG	.	PASS	Atlas-SNP
MAST1	22983	hgsc.bcm.edu	37	19	12980018	12980018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	117.0	30.0	120.0	0.0	0.25641	0	.	.	none	.	MAST1	214	.	NM_014975	exon22	c.A2912T	p.Q971L	CCATCCAGCGCTC	.	PASS	Atlas-SNP
ZBED1	9189	hgsc.bcm.edu	37	X	2408513	2408513	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	299.0	29.0	291.0	0.0	0.09699	0	.	.	none	.	ZBED1	64	.	NM_001171135	exon2	c.C248T	p.T83M	TGCTCCGTGTTGC	.	PASS	Atlas-SNP
PARK2	5071	hgsc.bcm.edu	37	6	162206824	162206824	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	96.0	15.0	75.0	0.0	0.15625	0	.	.	none	.	PARK2	96	.	NM_004562	exon7	c.G851C	p.G284A	GAGTAGCCAAGTT	.	PASS	Atlas-SNP
FOXC1	2296	hgsc.bcm.edu	37	6	1610903	1610903	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	47.0	13.0	61.0	0.0	0.276596	0	.	.	none	.	FOXC1	19	.	NM_001453	exon1	c.G223A	p.D75N	CCCAAGGACATGG	.	PASS	Atlas-SNP
LPPR5	0	hgsc.bcm.edu	37	1	99470000	99470000	+	Silent	SNP	G	G	A	rs148163708	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66.0	17.0	67.0	0.0	0.257576	0	G|1.000;T|0.000	.	alt	.	.	.	.	NM_001037317	exon1	c.C228T	p.P76P	GAGCACGGGGACC	.	PASS	Atlas-SNP
DGAT2L6	347516	hgsc.bcm.edu	37	X	69424319	69424319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	79.0	32.0	100.0	0.0	0.405063	0	.	.	none	.	DGAT2L6	40	.	NM_198512	exon6	c.G812A	p.R271H	TCACTCGCGGATC	.	PASS	Atlas-SNP
UAP1L1	91373	hgsc.bcm.edu	37	9	139973009	139973009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	78.0	16.0	82.0	0.0	0.205128	0	.	.	none	.	UAP1L1	46	.	NM_207309	exon3	c.C550T	p.H184Y	AGGGAGCACAACT	.	PASS	Atlas-SNP
HAS1	3036	hgsc.bcm.edu	37	19	52222861	52222861	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70.0	27.0	53.0	0.0	0.385714	0	.	.	none	.	HAS1	61	.	NM_001523	exon2	c.C300T	p.T100T	GGAGATGGTCAGC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230436	23230436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66.0	7.0	97.0	0.0	0.106061	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.G203A	p.G68D	TGTGGGGCAGGTA	.	PASS	Atlas-SNP
MAPKAPK2	9261	hgsc.bcm.edu	37	1	206858801	206858801	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	78.0	18.0	50.0	0.0	0.230769	0	.	.	none	.	MAPKAPK2	45	.	NM_004759	exon1	c.G227A	p.G76D	TCAACGGCAAAGT	.	PASS	Atlas-SNP
C2orf81	388963	hgsc.bcm.edu	37	2	74642291	74642291	+	Missense_Mutation	SNP	A	A	G	rs116859876	bycluster;byfrequency;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	92.0	13.0	74.0	0.0	0.141304	0	A|0.959;G|0.041	0.041	strong	.	C2orf81	23	.	NM_001145054	exon4	c.T932C	p.V311A	CCGCCCACAGAGG	.	PASS	Atlas-SNP
SRRM2	23524	hgsc.bcm.edu	37	16	2816224	2816224	+	Missense_Mutation	SNP	C	C	T	rs151100831	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	73.0	42.0	39.0	0.0	0.575342	0	C|0.999;A|0.001	.	alt	SRRM2,colon,carcinoma,0,1	SRRM2	263	1	NM_016333	exon11	c.C5695T	p.R1899W	CGGAGACGGTCAA	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274878	203274878	+	Splice_Site	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	79.0	14.0	51.0	0.0	0.177215	0	.	.	none	.	BTG2	16	.	NM_006763	exon1	c.142+2T>C	.	CACAGGTGAGCGC	.	PASS	Atlas-SNP
OR5L1	219437	hgsc.bcm.edu	37	11	55579424	55579424	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	403.0	61.0	413.0	0.0	0.151365	0	.	.	none	.	OR5L1	145	.	NM_001004738	exon1	c.G482C	p.C161S	ATTTGTGCTTAGC	.	PASS	Atlas-SNP
PIM1	5292	hgsc.bcm.edu	37	6	37139038	37139038	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	87.0	12.0	100.0	0.0	0.137931	0	.	.	none	.	PIM1	71	.	NM_001243186	exon4	c.G651T	p.V217V	GCCGGTGCAAGAT	.	PASS	Atlas-SNP
SLA	6503	hgsc.bcm.edu	37	8	134057342	134057342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	86.0	27.0	112.0	0.0	0.313953	0	.	.	none	.	SLA	63	.	NM_006748	exon5	c.T491C	p.V164A	TGTCTCACCGACA	.	PASS	Atlas-SNP
DLC1	10395	hgsc.bcm.edu	37	8	13356598	13356598	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	188.0	34.0	162.0	0.0	0.180851	0	.	.	none	DLC1_ENST00000511869,colon,carcinoma,+1,3	DLC1	411	3	NM_182643	exon2	c.A983G	p.Q328R	GGTTCCTGGGTGG	.	PASS	Atlas-SNP
SLC8A1	6546	hgsc.bcm.edu	37	2	40655834	40655834	+	Silent	SNP	T	T	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	152.0	37.0	168.0	0.0	0.243421	0	.	.	none	.	SLC8A1	221	.	NM_001252624	exon1	c.A1587G	p.V529V	AATAGTTACAGTG	.	PASS	Atlas-SNP
NDST1	3340	hgsc.bcm.edu	37	5	149901306	149901306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	31.0	9.0	33.0	0.0	0.290323	0	.	.	none	.	NDST1	79	.	NM_001543	exon2	c.G490A	p.V164M	TACGGCGTGGGCA	.	PASS	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056463	26056463	+	Missense_Mutation	SNP	G	G	A	rs79562358	bycluster;by1000genomes	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	182.0	72.0	171.0	0.0	0.395604	0	G|0.999;A|0.001	0.001	strong	.	HIST1H1C	80	.	NM_005319	exon1	c.C194T	p.A65V	GCCAACGCTTTTT	.	PASS	Atlas-SNP
RHBDF2	79651	hgsc.bcm.edu	37	17	74471179	74471179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69.0	8.0	61.0	0.0	0.115942	0	.	.	none	RHBDF2,colon,carcinoma,0,1	RHBDF2	57	1	NM_024599	exon10	c.C1247T	p.T416M	AGCAGCGTGATGA	.	PASS	Atlas-SNP
ZFHX4	79776	hgsc.bcm.edu	37	8	77765620	77765620	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69.0	12.0	50.0	0.0	0.173913	0	.	.	none	.	ZFHX4	878	.	NM_024721	exon10	c.A6463G	p.S2155G	TCTCCAAGTGAAG	.	PASS	Atlas-SNP
ERG	2078	hgsc.bcm.edu	37	21	39775625	39775625	+	Missense_Mutation	SNP	G	G	A	rs140222241		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	97.0	27.0	76.0	0.0	0.278351	0	G|1.000;A|0.000	0.000	weak	.	ERG	78	.	NM_001243432	exon6	c.C416T	p.T139M	CATAGCGTAGGAT	.	PASS	Atlas-SNP
PLEKHM2	23207	hgsc.bcm.edu	37	1	16054583	16054583	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	164.0	32.0	134.0	0.0	0.195122	0	.	.	none	.	PLEKHM2	94	.	NM_015164	exon10	c.C1770T	p.N590N	AGACAACAATCAC	.	PASS	Atlas-SNP
PLXNA1	5361	hgsc.bcm.edu	37	3	126747903	126747903	+	Silent	SNP	C	C	T	rs369457038	bycluster	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46.0	15.0	59.0	0.0	0.326087	0	.	.	weak	PLXNA1,NS,carcinoma,0,1	PLXNA1	185	1	NM_032242	exon25	c.C4737T	p.N1579N	TGACAACGATTGG	.	PASS	Atlas-SNP
MLL2	8085	hgsc.bcm.edu	37	12	49435941	49435941	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	69.0	16.0	65.0	0.0	0.231884	0	.	.	none	MLL2_ENST00000301067,bladder,carcinoma,0,2	MLL2	1173	2	NM_003482	exon28	c.C6040T	p.Q2014X	ACAGCTGGCCCAA	.	PASS	Atlas-SNP
ZNF705G	100131980	hgsc.bcm.edu	37	8	7215921	7215921	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	95.0	26.0	94.0	0.0	0.273684	0	.	.	none	.	ZNF705G	24	.	NM_001164457	exon5	c.A480T	p.E160D	ATGTGGTTCAGTG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203276287	203276287	+	Silent	SNP	C	C	G	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	66.0	14.0	58.0	0.0	0.212121	0	.	.	none	BTG2,NS,carcinoma,+2,1	BTG2	16	1	NM_006763	exon2	c.C198G	p.R66R	CTACCGCTGCATT	.	PASS	Atlas-SNP
EIF2B3	8891	hgsc.bcm.edu	37	1	45341356	45341356	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	125.0	8.0	95.0	0.0	0.064	0	.	.	none	.	EIF2B3	43	.	NM_020365	exon9	c.G987T	p.L329F	AGACAGCAATTTG	.	PASS	Atlas-SNP
MPEG1	219972	hgsc.bcm.edu	37	11	58979064	58979064	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	73.0	16.0	65.0	0.0	0.219178	0	.	.	none	.	MPEG1	72	.	NM_001039396	exon1	c.C1275T	p.I425I	CTCGTGGATCTGG	.	PASS	Atlas-SNP
NRF1	4899	hgsc.bcm.edu	37	7	129330335	129330335	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	102.0	28.0	79.0	0.0	0.27451	0	.	.	none	.	NRF1	40	.	NM_005011	exon5	c.G555T	p.L185L	AGAACTGCCGCCT	.	PASS	Atlas-SNP
INPP4B	8821	hgsc.bcm.edu	37	4	143044563	143044563	+	Silent	SNP	A	A	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	96.0	25.0	76.0	0.0	0.260417	0	.	.	none	.	INPP4B	132	.	NM_003866	exon21	c.T1899G	p.A633A	CAATCCAGCAAGC	.	PASS	Atlas-SNP
IGLL5	100423062	hgsc.bcm.edu	37	22	23230439	23230439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	64.0	15.0	94.0	0.0	0.234375	0	.	.	none	.	IGLL5	26	.	NM_001178126	exon1	c.G206A	p.R69K	GGGGCAGGTAAGG	.	PASS	Atlas-SNP
ARC	23237	hgsc.bcm.edu	37	8	143695199	143695199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	27.0	6.0	31.0	0.0	0.222222	0	.	.	none	.	ARC	34	.	NM_015193	exon1	c.G434A	p.R145H	GTGTGGCGGGCTG	.	PASS	Atlas-SNP
BTG2	7832	hgsc.bcm.edu	37	1	203274867	203274867	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	86.0	15.0	56.0	0.0	0.174419	0	.	.	none	BTG2,lymph_node,lymphoid_neoplasm,-1,2	BTG2	16	2	NM_006763	exon1	c.G133C	p.A45P	CAGGAGGCACTCA	.	PASS	Atlas-SNP
OR10Q1	219960	hgsc.bcm.edu	37	11	57995634	57995634	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	70.0	12.0	62.0	0.0	0.171429	0	.	.	none	.	OR10Q1	79	.	NM_001004471	exon1	c.C714A	p.G238G	GCGGCGGCCCTCG	.	PASS	Atlas-SNP
MYOM2	9172	hgsc.bcm.edu	37	8	2057240	2057240	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	190.0	38.0	171.0	0.0	0.2	0	.	.	none	MYOM2,NS,carcinoma,0,1	MYOM2	251	1	NM_003970	exon25	c.G3098T	p.R1033L	GGGTTCGCTTCTG	.	PASS	Atlas-SNP
KRTAP1-4	728255	hgsc.bcm.edu	37	17	39186028	39186028	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	144.0	40.0	145.0	0.0	0.277778	0	.	.	none	.	KRTAP1-4	4	.	NM_001257305	exon1	c.C303A	p.S101S	ACAGTAGGACGGG	.	PASS	Atlas-SNP
CYTB	0	hgsc.bcm.edu	37	MT	15884	15884	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	20.0	10.0	32.0	0.0	0.5	0	.	.	none	.	.	.	.	ENST00000361789	exon1	c.G1138A	p.A380T	AAATGGGCCTGTC	.	PASS	Atlas-SNP
RBMXL3	139804	hgsc.bcm.edu	37	X	114426552	114426552	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	37.0	16.0	30.0	0.0	0.432432	0	.	.	none	.	RBMXL3	83	.	NM_001145346	exon1	c.G2548A	p.D850N	AGTTACGACCGGA	.	PASS	Atlas-SNP
SRRM1	10250	hgsc.bcm.edu	37	1	24996752	24996752	+	Silent	SNP	A	A	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	202.0	57.0	222.0	0.0	0.282178	0	.	.	none	.	SRRM1	81	.	NM_005839	exon15	c.A2346T	p.P782P	GTCACCAGCTGTA	.	PASS	Atlas-SNP
SV2B	9899	hgsc.bcm.edu	37	15	91835705	91835705	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	218.0	53.0	211.0	0.0	0.243119	0	.	.	none	.	SV2B	98	.	NM_014848	exon14	c.C1975T	p.L659L	ATCCTTCTGGCTG	.	PASS	Atlas-SNP
GPD2	2820	hgsc.bcm.edu	37	2	157407178	157407178	+	Silent	SNP	G	G	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	119.0	25.0	104.0	0.0	0.210084	0	.	.	none	.	GPD2	59	.	NM_001083112	exon8	c.G891T	p.V297V	CTCTGTGCGCAAA	.	PASS	Atlas-SNP
FAM83G	644815	hgsc.bcm.edu	37	17	18907061	18907061	+	Silent	SNP	G	G	A	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	76.0	17.0	66.0	0.0	0.223684	0	.	.	none	.	FAM83G	51	.	NM_001039999	exon2	c.C294T	p.G98G	TTCCTCGCCGTCG	.	PASS	Atlas-SNP
MAST4	375449	hgsc.bcm.edu	37	5	66462402	66462402	+	Silent	SNP	C	C	T	novel		TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	136.0	36.0	99.0	0.0	0.264706	0	.	.	none	.	MAST4	218	.	NM_001164664	exon29	c.C7395T	p.F2465F	CAGCTTCCCTGAA	.	PASS	Atlas-SNP
GRHPR	9380	hgsc.bcm.edu	37	9	37424860	37424860	+	Missense_Mutation	SNP	G	G	T	rs180177304	alternate_allele	TCGA-FF-A7CR-01A-11D-A382-10	TCGA-FF-A7CR-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f8b1d5ee-a86d-4505-96f8-3e8b0c050946	2bbed379-b7b8-4107-afe0-bfd42b041bb3	46.0	18.0	55.0	0.0	0.391304	0	.	.	alt	.	GRHPR	35	.	NM_012203	exon2	c.G102T	p.W34C	GCAGTGGGACTCG	.	PASS	Atlas-SNP
