Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
RBM44	375316	hgsc.bcm.edu	37	2	238726640	238726644	+	Frame_Shift_Del	DEL	ACATT	ACATT	-	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	ACATT	ACATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	345.0	50.0	410.0	0.0	0.144928	0	.	.	none	.	RBM44	167	.	NM_001080504	exon3	c.1080_1084del	p.360_362del	.	.	PASS	Atlas-Indel
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305783	39305784	+	In_Frame_Ins	INS	-	-	CTGGGGCGGCAGCAG	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	58.0	30.0	53.0	0.0	0.517241	0	.	.	none	KRTAP4-5,colon,carcinoma,-2,3	KRTAP4-5	34	3	NM_033188	exon1	c.237_238insCTGCTGCCGCCCCAG	p.C79delinsCCCRPS	.	.	PASS	Atlas-Indel
CHD8	57680	hgsc.bcm.edu	37	14	21884030	21884031	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	22.0	22.0	0.0	0.0	1.000	.	.	.	none	.	CHD8	339	.	NM_001170629	exon5	c.1753_1754insA	p.Y585fs	.	.	PASS	Pindel,Atlas-Indel
SMARCA2	6595	hgsc.bcm.edu	37	9	2039777	2039785	+	In_Frame_Del	DEL	CAGCAGCAG	CAGCAGCAG	-	rs376509101	alternate_allele	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	CAGCAGCAG	CAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	93.0	13.0	100.0	0.0	0.139785	0	.	.	alt	SMARCA2_ENST00000349721,NS,carcinoma,0,2	SMARCA2	313	2	NM_139045	exon4	c.666_674del	p.222_225del	.	.	PASS	Atlas-Indel
RBM44	375316	hgsc.bcm.edu	37	2	238726642	238726647	+	In_Frame_Del	DEL	ATTACC	ATTACC	-	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	ATTACC	ATTACC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	40.0	40.0	0.0	0.0	1.000	.	.	.	none	.	RBM44	167	.	NM_001080504	exon3	c.1082_1087del	p.361_363del	.	.	PASS	Pindel
NSUN4	387338	hgsc.bcm.edu	37	1	46806573	46806654	+	Frame_Shift_Del	DEL	TCGATATAAGAAGAAATGGGTAAGGTCCGGCTGGGGGCGCAGGAGGGAAAAGTGAGGGTGGAAACTTCTCCAGTCTTTCCGT	TCGATATAAGAAGAAATGGGTAAGGTCCGGCTGGGGGCGCAGGAGGGAAAAGTGAGGGTGGAAACTTCTCCAGTCTTTCCGT	-	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	TCGATATAAGAAGAAATGGGTAAGGTCCGGCTGGGGGCGCAGGAGGGAAAAGTGAGGGTGGAAACTTCTCCAGTCTTTCCGT	TCGATATAAGAAGAAATGGGTAAGGTCCGGCTGGGGGCGCAGGAGGGAAAAGTGAGGGTGGAAACTTCTCCAGTCTTTCCGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	13.0	13.0	0.0	0.0	1.000	.	.	.	none	.	NSUN4	26	.	NM_199044	exon1	c.74_93del	p.25_31del	.	.	PASS	Pindel
TEX2	55852	hgsc.bcm.edu	37	17	62290117	62290117	+	Silent	SNP	G	G	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	146.0	44.0	119.0	0.0	0.30137	0	.	.	none	.	TEX2	89	.	NM_018469	exon2	c.C1461A	p.L487L	GAGGATGAGGTAC	.	PASS	Atlas-SNP
PODNL1	79883	hgsc.bcm.edu	37	19	14043787	14043787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	39.0	14.0	19.0	0.0	0.358974	0	.	.	none	.	PODNL1	27	.	NM_024825	exon8	c.C1270T	p.P424S	CCATGGGCAGCCG	.	PASS	Atlas-SNP
AMOTL1	154810	hgsc.bcm.edu	37	11	94602519	94602519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	87.0	25.0	103.0	0.0	0.287356	0	.	.	none	.	AMOTL1	95	.	NM_130847	exon12	c.G2645A	p.S882N	ACAAGAGTGCCGA	.	PASS	Atlas-SNP
ZNF706	51123	hgsc.bcm.edu	37	8	102212299	102212299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	110.0	5.0	130.0	0.0	0.0454545	0	.	.	none	.	ZNF706	12	.	NM_001042510	exon4	c.C162A	p.F54L	CTGCTTGAAGGTC	.	PASS	Atlas-SNP
SLC7A2	6542	hgsc.bcm.edu	37	8	17409482	17409482	+	Missense_Mutation	SNP	G	G	A	rs139867348		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	134.0	41.0	149.0	0.0	0.30597	0	G|1.000;A|0.000	0.000	weak	SLC7A2_ENST00000470360,NS,carcinoma,0,4	SLC7A2	157	4	NM_001164771	exon6	c.G1162A	p.A388T	CTCTGCGCCTTGT	.	PASS	Atlas-SNP
ENC1	8507	hgsc.bcm.edu	37	5	73930903	73930903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	59.0	21.0	61.0	0.0	0.355932	0	.	.	none	.	ENC1	56	.	NM_003633	exon2	c.A1408G	p.N470D	ACCTGTTTTCACA	.	PASS	Atlas-SNP
SLC4A1	6521	hgsc.bcm.edu	37	17	42336903	42336903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	95.0	4.0	74.0	0.0	0.0421053	0	.	.	none	.	SLC4A1	104	.	NM_000342	exon8	c.A656G	p.K219R	GGAATCTTTTCCA	.	PASS	Atlas-SNP
ABI3BP	25890	hgsc.bcm.edu	37	3	100497214	100497214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	52.0	3.0	57.0	0.0	0.0576923	0	.	.	none	ABI3BP_ENST00000383691,colon,carcinoma,-1,2	ABI3BP	305	2	NM_015429	exon26	c.G2114A	p.R705H	GGGCGGCGAGTCC	.	scavenged	Atlas-SNP
CADM3	57863	hgsc.bcm.edu	37	1	159166170	159166170	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	86.0	22.0	109.0	0.0	0.255814	0	.	.	none	.	CADM3	118	.	NM_021189	exon7	c.G810C	p.M270I	TGCGATGATTAGG	.	PASS	Atlas-SNP
CENPJ	55835	hgsc.bcm.edu	37	13	25479846	25479846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	50.0	23.0	94.0	0.0	0.46	0	.	.	none	.	CENPJ	116	.	NM_018451	exon7	c.T2330C	p.V777A	TCAGACACTTTAT	.	PASS	Atlas-SNP
TENM2	57451	hgsc.bcm.edu	37	5	167645245	167645245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	102.0	28.0	110.0	0.0	0.27451	0	.	.	none	ODZ2_ENST00000519204,NS,carcinoma,-1,3	.	.	3	NM_001122679	exon23	c.C4322T	p.A1441V	TCATTGCGGGACG	.	PASS	Atlas-SNP
LRP8	7804	hgsc.bcm.edu	37	1	53755315	53755315	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	40.0	9.0	35.0	0.0	0.225	0	.	.	none	.	LRP8	58	.	NM_004631	exon3	c.C291G	p.H97Q	GATGCAGTGGCCG	.	PASS	Atlas-SNP
TBCE	6905	hgsc.bcm.edu	37	1	235590506	235590506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	80.0	28.0	69.0	0.0	0.35	0	.	.	none	.	TBCE	40	.	NM_003193	exon6	c.T512C	p.V171A	ATGAAGTGATACA	.	PASS	Atlas-SNP
CHTF18	63922	hgsc.bcm.edu	37	16	841239	841239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	55.0	29.0	31.0	0.0	0.527273	0	.	.	none	.	CHTF18	52	.	NM_022092	exon8	c.C973T	p.P325S	CGGAAGCCCAGGC	.	PASS	Atlas-SNP
DYRK1A	1859	hgsc.bcm.edu	37	21	38862627	38862627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	142.0	36.0	148.0	0.0	0.253521	0	.	.	none	.	DYRK1A	85	.	NM_001396	exon6	c.C815T	p.A272V	GCACTGCACTGCT	.	PASS	Atlas-SNP
POU2F2	5452	hgsc.bcm.edu	37	19	42600030	42600030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	94.0	29.0	73.0	0.0	0.308511	0	.	.	none	POU2F2_ENST00000292077,NS,lymphoid_neoplasm,0,8	POU2F2	106	8	NM_001207025	exon9	c.A715G	p.T239A	TGGTCGTCTGGCT	.	PASS	Atlas-SNP
TEK	7010	hgsc.bcm.edu	37	9	27204915	27204915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	57.0	17.0	65.0	0.0	0.298246	0	.	.	none	.	TEK	250	.	NM_000459	exon14	c.C2216T	p.A739V	CACCAGCGGACCT	.	PASS	Atlas-SNP
HDAC2	3066	hgsc.bcm.edu	37	6	114262912	114262912	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	76.0	20.0	95.0	0.0	0.263158	0	.	.	none	.	HDAC2	102	.	NM_001527	exon13	c.A1396C	p.K466Q	TGGATTTATCTTC	.	PASS	Atlas-SNP
CARS2	79587	hgsc.bcm.edu	37	13	111340323	111340323	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	55.0	16.0	90.0	0.0	0.290909	0	.	.	none	.	CARS2	37	.	NM_024537	exon4	c.G436T	p.D146Y	TGAAGTCTTCCTC	.	PASS	Atlas-SNP
RAP1GAP	5909	hgsc.bcm.edu	37	1	21928279	21928279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	28.0	6.0	31.0	0.0	0.214286	0	.	.	none	.	RAP1GAP	119	.	NM_001145658	exon20	c.C1742T	p.P581L	CCAGCCGGAGGGC	.	PASS	Atlas-SNP
COL21A1	81578	hgsc.bcm.edu	37	6	56006741	56006741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	125.0	27.0	155.0	0.0	0.216	0	.	.	none	.	COL21A1	201	.	NM_030820	exon11	c.C1475A	p.S492Y	CCTGGAGATCCTG	.	PASS	Atlas-SNP
ABCC9	10060	hgsc.bcm.edu	37	12	21998615	21998615	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	47.0	17.0	81.0	0.0	0.361702	0	.	.	none	ABCC9,colon,carcinoma,-1,1	ABCC9	411	1	NM_005691	exon24	c.G3018A	p.S1006S	AATGACCGAATGC	.	PASS	Atlas-SNP
FNTA	2339	hgsc.bcm.edu	37	8	42940407	42940407	+	Silent	SNP	A	A	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	343.0	97.0	379.0	0.0	0.282799	0	.	.	none	.	FNTA	34	.	NM_002027	exon9	c.A1122T	p.P374P	CTCACCAACAAAT	.	PASS	Atlas-SNP
BBS1	582	hgsc.bcm.edu	37	11	66294208	66294208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	125.0	23.0	118.0	0.0	0.184	0	.	.	none	.	BBS1	58	.	NM_024649	exon13	c.G1269T	p.M423I	GGCCATGAAACTC	.	PASS	Atlas-SNP
SPHKAP	80309	hgsc.bcm.edu	37	2	228881444	228881444	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	80.0	19.0	103.0	0.0	0.2375	0	.	.	none	.	SPHKAP	750	.	NM_030623	exon7	c.G4126A	p.V1376I	CGGTAACAGAGTC	.	PASS	Atlas-SNP
TRIM66	9866	hgsc.bcm.edu	37	11	8646767	8646767	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	34.0	8.0	43.0	0.0	0.235294	0	.	.	none	.	TRIM66	45	.	NM_014818	exon11	c.C1884T	p.T628T	CAGCGAGGTGGAG	.	PASS	Atlas-SNP
CEP128	145508	hgsc.bcm.edu	37	14	81329188	81329188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	39.0	19.0	52.0	0.0	0.487179	0	.	.	none	.	CEP128	146	.	NM_152446	exon8	c.G675T	p.Q225H	CAGTTCCTGAAGC	.	PASS	Atlas-SNP
ZP4	57829	hgsc.bcm.edu	37	1	238049158	238049158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	70.0	19.0	80.0	0.0	0.271429	0	.	.	none	.	ZP4	161	.	NM_021186	exon7	c.A868C	p.S290R	TGCTACTTACTGA	.	PASS	Atlas-SNP
DGKZ	8525	hgsc.bcm.edu	37	11	46397091	46397091	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	76.0	21.0	59.0	0.0	0.276316	0	.	.	none	.	DGKZ	199	.	NM_001105540	exon21	c.T2384G	p.L795R	GCAAGCTTGCAGC	.	PASS	Atlas-SNP
GSPT1	2935	hgsc.bcm.edu	37	16	12009383	12009383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	101.0	22.0	47.0	0.0	0.217822	0	.	.	none	.	GSPT1	71	.	NM_001130006	exon1	c.C195G	p.F65L	CCGGCTGAAGGCC	.	PASS	Atlas-SNP
CARS2	79587	hgsc.bcm.edu	37	13	111340366	111340366	+	Splice_Site	SNP	C	C	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	42.0	13.0	57.0	0.0	0.309524	0	.	.	none	.	CARS2	37	.	NM_024537	exon5	c.394-1G>T	.	ATTCATCTGCAGA	.	PASS	Atlas-SNP
ANKRD44	91526	hgsc.bcm.edu	37	2	197878306	197878306	+	Missense_Mutation	SNP	G	G	A	rs145800695	bycluster;byfrequency;by1000genomes	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	130.0	32.0	134.0	1.0	0.246154	0.00746269	G|0.997;A|0.003	0.003	strong	ANKRD44_ENST00000424317,NS,carcinoma,+1,2	ANKRD44	281	2	NM_001195144	exon18	c.C1853T	p.A618V	ATAAGCGCTTCCA	.	scavenged	Atlas-SNP
CREBBP	1387	hgsc.bcm.edu	37	16	3786764	3786764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	194.0	43.0	160.0	0.0	0.221649	0	.	.	none	CREBBP,colon,carcinoma,+1,4	CREBBP	546	4	NM_004380	exon27	c.A4447T	p.I1483F	GGAAGATGTAATC	.	PASS	Atlas-SNP
PTPRA	5786	hgsc.bcm.edu	37	20	3007337	3007337	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	80.0	24.0	89.0	0.0	0.3	0	.	.	none	.	PTPRA	75	.	NM_002836	exon22	c.T1619G	p.L540X	AGAAGTTAACATC	.	PASS	Atlas-SNP
MED13L	23389	hgsc.bcm.edu	37	12	116408551	116408551	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	94.0	14.0	94.0	0.0	0.148936	0	.	.	none	.	MED13L	193	.	NM_015335	exon27	c.T5915G	p.F1972C	CGGCCAAAAACAG	.	PASS	Atlas-SNP
KIAA1967	57805	hgsc.bcm.edu	37	8	22472491	22472491	+	Silent	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	46.0	14.0	38.0	0.0	0.304348	0	.	.	none	.	KIAA1967	72	.	NM_021174	exon11	c.T1182A	p.I394I	TGGCATTGATTTG	.	PASS	Atlas-SNP
RNF214	257160	hgsc.bcm.edu	37	11	117109653	117109653	+	Silent	SNP	T	T	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	67.0	14.0	78.0	0.0	0.208955	0	.	.	none	.	RNF214	54	.	NM_207343	exon3	c.T444C	p.N148N	CAGGAATTGCTCT	.	PASS	Atlas-SNP
HDAC2	3066	hgsc.bcm.edu	37	6	114262899	114262899	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	74.0	20.0	98.0	0.0	0.27027	0	.	.	none	.	HDAC2	102	.	NM_001527	exon13	c.A1409T	p.N470I	CCACTGTTGTCCT	.	PASS	Atlas-SNP
FAM73B	84895	hgsc.bcm.edu	37	9	131821550	131821550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	72.0	20.0	65.0	0.0	0.277778	0	.	.	none	.	FAM73B	37	.	NM_032809	exon7	c.G793A	p.E265K	GACCTCGGTGAGC	.	PASS	Atlas-SNP
ANKRD10	55608	hgsc.bcm.edu	37	13	111532094	111532094	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	35.0	19.0	58.0	0.0	0.542857	0	.	.	none	ANKRD10,NS,carcinoma,0,1	ANKRD10	24	1	NM_017664	exon6	c.G1153C	p.E385Q	TGCTTTCAGCAGT	.	PASS	Atlas-SNP
ASPM	259266	hgsc.bcm.edu	37	1	197069752	197069752	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	110.0	30.0	151.0	0.0	0.272727	0	.	.	none	.	ASPM	444	.	NM_018136	exon18	c.A8629C	p.K2877Q	ACTGTTTTCTGGT	.	PASS	Atlas-SNP
SPOP	8405	hgsc.bcm.edu	37	17	47696644	47696644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	114.0	33.0	98.0	0.0	0.289474	0	.	.	none	SPOP,NS,adenoma,+1,3	SPOP	91	3	NM_001007228	exon4	c.T304A	p.F102I	ATTTGAATTTTGC	.	PASS	Atlas-SNP
CS	1431	hgsc.bcm.edu	37	12	56676766	56676766	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	55.0	16.0	45.0	0.0	0.290909	0	.	.	none	.	CS	44	.	NM_004077	exon5	c.T277G	p.F93V	CTCGGAAACGGAT	.	PASS	Atlas-SNP
KCTD20	222658	hgsc.bcm.edu	37	6	36454876	36454876	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	184.0	40.0	186.0	1.0	0.217391	0.00537634	.	.	none	KCTD20,NS,lymphoid_neoplasm,+1,1	KCTD20	37	1	NM_173562	exon8	c.A1184C	p.H395P	TGCATCACCCACC	.	scavenged	Atlas-SNP
ZSWIM6	57688	hgsc.bcm.edu	37	5	60831355	60831355	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	148.0	46.0	136.0	0.0	0.310811	0	.	.	none	ZSWIM6,colon,carcinoma,0,1	ZSWIM6	51	1	NM_020928	exon10	c.G2290A	p.V764I	GAGAGCGTTCCAA	.	PASS	Atlas-SNP
RYR1	6261	hgsc.bcm.edu	37	19	38931449	38931449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	92.0	29.0	116.0	0.0	0.315217	0	.	.	none	.	RYR1	708	.	NM_001042723	exon2	c.C110T	p.A37V	GCCTGGCCGCCGA	.	PASS	Atlas-SNP
TBC1D10B	26000	hgsc.bcm.edu	37	16	30381303	30381303	+	Missense_Mutation	SNP	C	C	G	rs12930787	bycluster;byfrequency;by1000genomes	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	5.0	5.0	0.0	0.0	1	.	C|0.776;G|0.224	0.224	strong	.	TBC1D10B	32	.	NM_015527	exon1	c.G202C	p.E68Q	AGGTCTCGGCCGA	.	PASS	Atlas-SNP
UBR4	23352	hgsc.bcm.edu	37	1	19503103	19503103	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	99.0	30.0	100.0	0.0	0.30303	0	.	.	none	.	UBR4	415	.	NM_020765	exon20	c.C2756G	p.S919C	TGCTTAGACCAGT	.	PASS	Atlas-SNP
CS	1431	hgsc.bcm.edu	37	12	56676685	56676685	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	83.0	23.0	71.0	0.0	0.277108	0	.	.	none	.	CS	44	.	NM_004077	exon5	c.T358G	p.F120V	GCCAAAATAAGCC	.	PASS	Atlas-SNP
TP53	7157	hgsc.bcm.edu	37	17	7574035	7574035	+	Splice_Site	SNP	T	T	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	63.0	26.0	93.0	0.0	0.412698	0	.	.	none	TP53_ENST00000269305,NS,carcinoma,0,13	TP53	33396	13	NM_000546	exon11	c.994-2A>G	.	CGGATCTGCAGCA	.	PASS	Atlas-SNP
PTCH1	5727	hgsc.bcm.edu	37	9	98241333	98241333	+	Missense_Mutation	SNP	G	G	C	rs201602238	bycluster;by1000genomes;alternate_allele	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	105.0	30.0	108.0	0.0	0.285714	0	G|1.000;A|0.000	.	alt	.	PTCH1	1850	.	NM_000264	exon8	c.C1164G	p.N388K	GTCCTCGTTCCAG	.	PASS	Atlas-SNP
RBBP6	5930	hgsc.bcm.edu	37	16	24557518	24557518	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	107.0	31.0	82.0	0.0	0.28972	0	.	.	none	.	RBBP6	158	.	NM_018703	exon2	c.T201A	p.N67K	TAAGAATTCTTCT	.	PASS	Atlas-SNP
SETD1B	23067	hgsc.bcm.edu	37	12	122257461	122257461	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	58.0	4.0	50.0	0.0	0.0689655	0	.	.	none	.	SETD1B	105	.	NM_015048	exon11	c.G3441A	p.E1147E	AGAAGAGGAGGAG	.	PASS	Atlas-SNP
FBXO34	55030	hgsc.bcm.edu	37	14	55817618	55817618	+	Silent	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	109.0	26.0	134.0	0.0	0.238532	0	.	.	none	.	FBXO34	61	.	NM_017943	exon2	c.T510G	p.V170V	GGAGGTTAACAGC	.	PASS	Atlas-SNP
SIGLEC1	6614	hgsc.bcm.edu	37	20	3679921	3679921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	117.0	5.0	99.0	0.0	0.042735	0	.	.	none	.	SIGLEC1	210	.	NM_023068	exon7	c.T1714C	p.S572P	GGTATGAGCCGGC	.	PASS	Atlas-SNP
ATG4C	84938	hgsc.bcm.edu	37	1	63300503	63300503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	135.0	28.0	167.0	0.0	0.207407	0	.	.	none	.	ATG4C	96	.	NM_178221	exon9	c.A1069C	p.I357L	GTCAGCATAAAGG	.	PASS	Atlas-SNP
ANKRD46	157567	hgsc.bcm.edu	37	8	101541987	101541987	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	138.0	38.0	150.0	0.0	0.275362	0	.	.	none	.	ANKRD46	13	.	NM_001270378	exon3	c.T75A	p.F25L	ATAATTAAAGTCC	.	PASS	Atlas-SNP
MTHFD1	4522	hgsc.bcm.edu	37	14	64921449	64921449	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	75.0	27.0	79.0	0.0	0.36	0	.	.	none	.	MTHFD1	61	.	NM_005956	exon26	c.G2574A	p.G858G	CTTTGGGAATCTC	.	PASS	Atlas-SNP
RBM23	55147	hgsc.bcm.edu	37	14	23371265	23371265	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	65.0	6.0	63.0	0.0	0.0923077	0	.	.	none	.	RBM23	44	.	NM_001077351	exon12	c.C1170T	p.A390A	GGCGGCGGCAGCA	.	PASS	Atlas-SNP
C1orf51	148523	hgsc.bcm.edu	37	1	150256253	150256253	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	121.0	36.0	155.0	0.0	0.297521	0	.	.	none	.	C1orf51	35	.	NM_144697	exon2	c.C405T	p.D135D	CACAGACCTACTC	.	PASS	Atlas-SNP
MUC2	4583	hgsc.bcm.edu	37	11	1093342	1093342	+	Missense_Mutation	SNP	C	C	A	rs55695633	alternate_allele	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	74.0	9.0	68.0	2.0	0.121622	0.0294118	.	.	alt	MUC2_ENST00000441003,NS,carcinoma,-2,2	MUC2	614	2	NM_002457	exon30	c.C5161A	p.P1721T	CCAACCCCGACAC	.	scavenged	Atlas-SNP
AGA	175	hgsc.bcm.edu	37	4	178355534	178355534	+	Splice_Site	SNP	A	A	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	199.0	55.0	235.0	0.0	0.276382	0	.	.	none	.	AGA	39	.	NM_000027	exon8	c.806+2T>C	.	AGTCATACCTTGG	.	PASS	Atlas-SNP
CARS2	79587	hgsc.bcm.edu	37	13	111340329	111340329	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	52.0	16.0	81.0	0.0	0.307692	0	.	.	none	.	CARS2	37	.	NM_024537	exon4	c.G430A	p.E144K	CTTCCTCATAAAG	.	PASS	Atlas-SNP
FKRP	79147	hgsc.bcm.edu	37	19	47258887	47258887	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	46.0	26.0	61.0	0.0	0.565217	0	.	.	none	.	FKRP	16	.	NM_024301	exon4	c.C180G	p.D60E	ATTTGACAACGCG	.	PASS	Atlas-SNP
FAM161A	84140	hgsc.bcm.edu	37	2	62065671	62065671	+	Splice_Site	SNP	A	A	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	105.0	27.0	119.0	0.0	0.257143	0	.	.	none	.	FAM161A	200	.	NM_001201543	exon5	c.1751+2T>C	.	CATGATACCTGAG	.	PASS	Atlas-SNP
PPP1R18	170954	hgsc.bcm.edu	37	6	30652888	30652888	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	65.0	5.0	56.0	0.0	0.0769231	0	.	.	none	KIAA1949,rectum,carcinoma,0,1	.	.	1	NM_001134870	exon2	c.C908A	p.A303D	CCTTGGGCCTCCC	.	PASS	Atlas-SNP
APOBR	55911	hgsc.bcm.edu	37	16	28507424	28507424	+	Silent	SNP	C	C	T	rs441214	bycluster;byfrequency	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	18.0	6.0	17.0	0.0	0.333333	0	C|0.500;T|0.500	0.500	strong	.	APOBR	89	.	NM_018690	exon2	c.C1062T	p.A354A	GGAGGCCGGGACA	.	PASS	Atlas-SNP
COL4A3	1285	hgsc.bcm.edu	37	2	228172583	228172583	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	147.0	38.0	180.0	0.0	0.258503	0	.	.	none	.	COL4A3	293	.	NM_000091	exon48	c.G4410A	p.G1470G	CAGTGGGTTTTCT	.	PASS	Atlas-SNP
TPR	7175	hgsc.bcm.edu	37	1	186306183	186306183	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	89.0	18.0	103.0	0.0	0.202247	0	.	.	none	.	TPR	441	.	NM_003292	exon32	c.T4468A	p.S1490T	ATTTTGATTTTGT	.	PASS	Atlas-SNP
FPGT	8790	hgsc.bcm.edu	37	1	74670196	74670196	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	154.0	54.0	152.0	0.0	0.350649	0	.	.	none	.	FPGT	77	.	NM_003838	exon4	c.C465T	p.P155P	TTTCCCCTTAAAT	.	PASS	Atlas-SNP
SGPP1	81537	hgsc.bcm.edu	37	14	64165346	64165346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	457.0	97.0	449.0	0.0	0.212254	0	.	.	none	.	SGPP1	29	.	NM_030791	exon2	c.C715A	p.P239T	AGCAGGGAATAAG	.	PASS	Atlas-SNP
ACCS	84680	hgsc.bcm.edu	37	11	44092850	44092850	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	87.0	18.0	112.0	0.0	0.206897	0	.	.	none	.	ACCS	64	.	NM_032592	exon3	c.C333T	p.D111D	CTTTGACCTGCTG	.	PASS	Atlas-SNP
OCIAD1	54940	hgsc.bcm.edu	37	4	48835428	48835428	+	Silent	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	324.0	82.0	290.0	0.0	0.253086	0	.	.	none	.	OCIAD1	27	.	NM_001168254	exon3	c.T84A	p.P28P	AGGGCCTGATTAC	.	PASS	Atlas-SNP
STAB2	55576	hgsc.bcm.edu	37	12	104071379	104071379	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	60.0	9.0	56.0	0.0	0.15	0	.	.	none	.	STAB2	370	.	NM_017564	exon25	c.G2795A	p.G932D	ATGTGGGTCCCGG	.	PASS	Atlas-SNP
STRBP	55342	hgsc.bcm.edu	37	9	125923280	125923280	+	Silent	SNP	A	A	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	318.0	95.0	298.0	0.0	0.298742	0	.	.	none	.	STRBP	73	.	NM_018387	exon7	c.T603C	p.S201S	TCGAAGAGACGCC	.	PASS	Atlas-SNP
ATM	472	hgsc.bcm.edu	37	11	108202718	108202718	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	116.0	30.0	125.0	0.0	0.258621	0	.	.	none	.	ATM	1657	.	NM_000051	exon52	c.G7742C	p.S2581T	GAAGAAGCAGAAT	.	PASS	Atlas-SNP
ATXN7L1	222255	hgsc.bcm.edu	37	7	105254603	105254603	+	Silent	SNP	G	G	A	rs147930086	by1000genomes	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	81.0	24.0	57.0	0.0	0.296296	0	G|0.998;A|0.002	0.002	strong	.	ATXN7L1	56	.	NM_020725	exon10	c.C2178T	p.P726P	GTCCGCGGGGCCG	.	PASS	Atlas-SNP
ART5	116969	hgsc.bcm.edu	37	11	3661044	3661044	+	Silent	SNP	G	G	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	94.0	28.0	144.0	0.0	0.297872	0	.	.	none	.	ART5	38	.	NM_053017	exon2	c.C615T	p.C205C	CCCAAAGCAAGTT	.	PASS	Atlas-SNP
HIST1H1C	3006	hgsc.bcm.edu	37	6	26056500	26056500	+	Missense_Mutation	SNP	C	C	T	rs372319415	alternate_allele	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	117.0	66.0	108.0	0.0	0.564103	0	.	.	alt	.	HIST1H1C	80	.	NM_005319	exon1	c.G157A	p.E53K	TACGCTCTTTAGA	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228564799	228564799	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	52.0	17.0	31.0	0.0	0.326923	0	.	.	none	.	OBSCN	2142	.	NM_001271223	exon112	c.C25957T	p.R8653W	AGCGGGCGGGCGC	.	PASS	Atlas-SNP
ZNF768	79724	hgsc.bcm.edu	37	16	30537265	30537265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	87.0	18.0	56.0	0.0	0.206897	0	.	.	none	.	ZNF768	28	.	NM_024671	exon2	c.G196C	p.E66Q	GTGGCTCAAACCC	.	PASS	Atlas-SNP
PITPNC1	26207	hgsc.bcm.edu	37	17	65574302	65574302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	53.0	19.0	65.0	0.0	0.358491	0	.	.	none	.	PITPNC1	47	.	NM_012417	exon5	c.T295A	p.C99S	CCACAGTGTTCCT	.	PASS	Atlas-SNP
NME8	51314	hgsc.bcm.edu	37	7	37907335	37907335	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	138.0	29.0	145.0	0.0	0.210145	0	.	.	none	.	.	.	.	NM_016616	exon11	c.C653G	p.T218R	TTATGACAAGTGG	.	PASS	Atlas-SNP
FAS	355	hgsc.bcm.edu	37	10	90770574	90770574	+	Splice_Site	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	92.0	35.0	153.0	0.0	0.380435	0	.	.	none	.	FAS	47	.	NM_152872	exon6	c.568+2T>A	.	TTGGGGTAAGTTC	.	PASS	Atlas-SNP
SULF2	55959	hgsc.bcm.edu	37	20	46331406	46331406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	52.0	12.0	42.0	0.0	0.230769	0	.	.	none	.	SULF2	131	.	NM_001161841	exon4	c.G424A	p.G142R	ACTTCCCGAAGAA	.	PASS	Atlas-SNP
AARD	441376	hgsc.bcm.edu	37	8	117950758	117950758	+	Missense_Mutation	SNP	G	G	T	rs111477672	bycluster;by1000genomes	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	11.0	10.0	1.0	0.0	0.909091	0	G|0.976;T|0.024	0.024	strong	.	.	.	.	NM_001025357	exon1	c.G276T	p.Q92H	GGAGCAGAGCTGG	.	PASS	Atlas-SNP
LPIN1	23175	hgsc.bcm.edu	37	2	11955228	11955228	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	119.0	23.0	125.0	0.0	0.193277	0	.	.	none	.	LPIN1	99	.	NM_001261428	exon19	c.T2411A	p.F804Y	ATAAATTTCTCTA	.	PASS	Atlas-SNP
FARSB	10056	hgsc.bcm.edu	37	2	223504317	223504317	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	101.0	20.0	94.0	0.0	0.19802	0	.	.	none	.	FARSB	49	.	NM_005687	exon5	c.T437A	p.L146X	TGATGTAATTTCT	.	PASS	Atlas-SNP
ERICH1	157697	hgsc.bcm.edu	37	8	623759	623759	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	69.0	10.0	73.0	0.0	0.144928	0	.	.	none	.	ERICH1	50	.	NM_207332	exon4	c.A593C	p.E198A	TCCCCTTCATTGC	.	PASS	Atlas-SNP
CACNG5	27091	hgsc.bcm.edu	37	17	64881273	64881273	+	Silent	SNP	C	C	T	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	45.0	16.0	37.0	0.0	0.355556	0	.	.	none	.	CACNG5	77	.	NM_145811	exon5	c.C744T	p.S248S	CTCCAGCGAGGCC	.	PASS	Atlas-SNP
CARD11	84433	hgsc.bcm.edu	37	7	2977614	2977614	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	44.0	23.0	48.0	0.0	0.522727	0	.	.	none	CARD11,NS,lymphoid_neoplasm,0,4	CARD11	339	4	NM_032415	exon8	c.A1070T	p.D357V	TCACAGTCCTTTC	.	PASS	Atlas-SNP
DYNC2H1	79659	hgsc.bcm.edu	37	11	103070165	103070165	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	88.0	30.0	121.0	0.0	0.340909	0	.	.	none	.	DYNC2H1	246	.	NM_001377	exon49	c.G8048C	p.R2683T	TTTCCAGAGGATA	.	PASS	Atlas-SNP
ARID1A	8289	hgsc.bcm.edu	37	1	27101097	27101097	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	124.0	38.0	114.0	0.0	0.306452	0	.	.	none	.	ARID1A	842	.	NM_006015	exon18	c.G4379C	p.G1460A	AGTTTGGCCGAGA	.	PASS	Atlas-SNP
CHST2	9435	hgsc.bcm.edu	37	3	142839977	142839977	+	Missense_Mutation	SNP	G	G	A	rs185111962	bycluster;by1000genomes	TCGA-GR-A4D4-01A-11D-A31X-10	TCGA-GR-A4D4-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8f63ab7f-314f-4c7f-92cc-4f512ca6478e	32dbeee5-dae4-41d3-ac37-873569dcc6a9	13.0	9.0	1.0	0.0	0.692308	0	G|0.990;A|0.010	0.010	strong	.	CHST2	67	.	NM_004267	exon2	c.G319A	p.G107R	CGCCCAGGGCCGC	.	PASS	Atlas-SNP
