Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TTotCov	TVarCov	NTotCov	NVarCov	TVarRat	NVarRat	dbSNP_AF	dbSNP_PopFreq	dbSNP_Strength	COSMIC_Codon	COSMIC_Gene	COSMIC_Gene_Freq	COSMIC_Site_Freq	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	Confidence	Algorithm
SERPIND1	3053	hgsc.bcm.edu	37	22	21133944	21133944	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	114.0	27.0	95.0	0.0	0.237	.	.	.	none	.	SERPIND1	92	.	NM_000185	exon2	c.343delC	p.Q115fs	.	.	PASS	Pindel,Atlas-Indel
APOB	338	hgsc.bcm.edu	37	2	21241888	21241888	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	132.0	34.0	194.0	0.0	0.257576	0	.	.	none	APOB,caecum,carcinoma,+1,1	APOB	761	1	NM_000384	exon20	c.3098delT	p.L1033fs	.	.	PASS	Atlas-Indel
CHEK2	11200	hgsc.bcm.edu	37	22	29130418	29130419	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	84.0	15.0	71.0	0.0	0.179	.	.	.	none	.	CHEK2	438	.	NM_007194	exon2	c.292_293insAT	p.A98fs	.	.	PASS	Pindel,Atlas-Indel
AASS	10157	hgsc.bcm.edu	37	7	121726174	121726174	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	66.0	16.0	126.0	0.0	0.242	.	.	.	none	.	AASS	123	.	NM_005763	exon19	c.2077delC	p.P693fs	.	.	PASS	Pindel,Atlas-Indel
NCAM2	4685	hgsc.bcm.edu	37	21	22881305	22881306	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	159.0	21.0	198.0	0.0	0.132075	0	.	.	none	NCAM2,NS,carcinoma,+1,1	NCAM2	220	1	NM_004540	exon16	c.2210_2211del	p.737_737del	.	.	PASS	Atlas-Indel
HECTD1	25831	hgsc.bcm.edu	37	14	31598249	31598250	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	206.0	28.0	290.0	0.0	0.135922	0	.	.	none	.	HECTD1	159	.	NM_015382	exon25	c.4328_4329insG	p.S1443fs	.	.	PASS	Atlas-Indel
HECTD1	25831	hgsc.bcm.edu	37	14	31598245	31598247	+	In_Frame_Del	DEL	GGA	GGA	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	GGA	GGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	208.0	27.0	282.0	0.0	0.129808	0	.	.	none	.	HECTD1	159	.	NM_015382	exon25	c.4331_4333del	p.1444_1445del	.	.	PASS	Atlas-Indel
IFIH1	64135	hgsc.bcm.edu	37	2	163144683	163144684	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	334.0	53.0	365.0	0.0	0.159	.	.	.	none	IFIH1,scalp,carcinoma,0,1	IFIH1	102	1	NM_022168	exon5	c.1057_1058insA	p.A353fs	.	.	PASS	Pindel,Atlas-Indel
SIPA1L1	26037	hgsc.bcm.edu	37	14	72152170	72152172	+	In_Frame_Del	DEL	AAC	AAC	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	AAC	AAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	94.0	28.0	81.0	0.0	0.298	.	.	.	none	.	SIPA1L1	219	.	NM_015556	exon10	c.3195_3197del	p.1065_1066del	.	.	PASS	Pindel,Atlas-Indel
UACA	55075	hgsc.bcm.edu	37	15	70961075	70961076	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	424.0	80.0	504.0	0.0	0.189	.	.	.	none	.	UACA	235	.	NM_018003	exon16	c.1948_1949insA	p.L650fs	.	.	PASS	Pindel,Atlas-Indel
B2M	567	hgsc.bcm.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	57.0	13.0	98.0	0.0	0.22807	0	.	.	none	B2M,colon,carcinoma,+1,2	B2M	99	2	NM_004048	exon1	c.36_37del	p.12_13del	.	.	PASS	Atlas-Indel
C21orf67	84536	hgsc.bcm.edu	37	21	46355747	46355748	+	RNA	DEL	TC	TC	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	69.0	25.0	51.0	0.0	0.362	.	.	.	none	.	C21orf67	8	.	.	.	.	.	.	.	PASS	Pindel,Atlas-Indel
TMSB4X	7114	hgsc.bcm.edu	37	X	12994405	12994410	+	In_Frame_Del	DEL	GAGATC	GAGATC	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	GAGATC	GAGATC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	312.0	41.0	400.0	0.0	0.13141	0	.	.	none	.	TMSB4X	3	.	NM_021109	exon2	c.24_29del	p.8_10del	.	.	PASS	Atlas-Indel
LRRIQ1	84125	hgsc.bcm.edu	37	12	85449643	85449643	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	96.0	16.0	110.0	0.0	0.167	.	.	.	none	.	LRRIQ1	512	.	NM_001079910	exon8	c.1071delG	p.R357fs	.	.	PASS	Pindel,Atlas-Indel
PEG3	5178	hgsc.bcm.edu	37	19	57325865	57325865	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	118.0	23.0	142.0	0.0	0.194915	0	.	.	none	.	PEG3	414	.	NM_001146184	exon9	c.3946delA	p.T1316fs	.	.	PASS	Atlas-Indel
NCAM2	4685	hgsc.bcm.edu	37	21	22881298	22881299	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	167.0	25.0	212.0	0.0	0.149701	0	.	.	none	.	NCAM2	220	.	NM_004540	exon16	c.2204_2205insC	p.I735fs	.	.	PASS	Atlas-Indel
NR2F2	7026	hgsc.bcm.edu	37	15	96877601	96877615	+	In_Frame_Del	DEL	CTCACCTGGAGCGAG	CTCACCTGGAGCGAG	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	CTCACCTGGAGCGAG	CTCACCTGGAGCGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	55.0	11.0	74.0	0.0	0.200	.	.	.	none	.	NR2F2	35	.	NM_021005	exon2	c.738_752del	p.246_251del	.	.	PASS	Pindel,Atlas-Indel
C4orf17	84103	hgsc.bcm.edu	37	4	100461611	100461618	+	In_Frame_Del	DEL	AGGTTAAG	AGGTTAAG	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	AGGTTAAG	AGGTTAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	114.0	25.0	137.0	0.0	0.219	.	.	.	none	.	C4orf17	42	.	NM_032149	exon8	c.878_880del	p.293_294del	.	.	PASS	Pindel,Atlas-Indel
APOB	338	hgsc.bcm.edu	37	2	21241889	21241890	+	Frame_Shift_Del	DEL	GG	GG	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	131.0	27.0	197.0	0.0	0.206	.	.	.	none	APOB,caecum,carcinoma,+2,1	APOB	761	1	NM_000384	exon20	c.3096_3097del	p.1032_1033del	.	.	PASS	Pindel
PEG3	5178	hgsc.bcm.edu	37	19	57325865	57325866	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	122.0	19.0	142.0	0.0	0.156	.	.	.	none	.	PEG3	414	.	NM_001146184	exon9	c.3945_3946del	p.1315_1316del	.	.	PASS	Pindel
ISL1	3670	hgsc.bcm.edu	37	5	50683348	50683348	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	147.0	18.0	113.0	0.0	0.122449	0	.	.	none	.	ISL1	65	.	NM_002202	exon3	c.G243A	p.K81K	CGCCAAGTGCAGC	.	PASS	Atlas-SNP
KDM3A	55818	hgsc.bcm.edu	37	2	86669185	86669185	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	51.0	20.0	71.0	0.0	0.392157	0	.	.	none	.	KDM3A	179	.	NM_001146688	exon2	c.C15T	p.L5L	CACGCTCGGAGAA	.	PASS	Atlas-SNP
MIS18BP1	55320	hgsc.bcm.edu	37	14	45693171	45693171	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	140.0	42.0	173.0	0.0	0.3	0	.	.	none	.	MIS18BP1	92	.	NM_018353	exon11	c.T2619C	p.G873G	AATTAAACCAGGT	.	PASS	Atlas-SNP
AKAP17A	8227	hgsc.bcm.edu	37	X	1712439	1712439	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	144.0	37.0	156.0	0.0	0.256944	0	.	.	none	.	AKAP17A	46	.	NM_005088	exon2	c.C84T	p.T28T	CATCACCAAGATG	.	PASS	Atlas-SNP
KLHL7	55975	hgsc.bcm.edu	37	7	23165412	23165412	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	84.0	42.0	152.0	0.0	0.5	0	.	.	none	.	KLHL7	102	.	NM_001172428	exon5	c.G475A	p.E159K	CTTCCAGAGTGTG	.	PASS	Atlas-SNP
RGS8	85397	hgsc.bcm.edu	37	1	182640795	182640795	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	223.0	73.0	279.0	0.0	0.327354	0	.	.	none	.	RGS8	51	.	NM_033345	exon2	c.G77T	p.R26I	CACTGTCTTTGGC	.	PASS	Atlas-SNP
OR2A25	392138	hgsc.bcm.edu	37	7	143771336	143771336	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	146.0	26.0	181.0	0.0	0.178082	0	.	.	none	OR2A25,caecum,carcinoma,+2,1	OR2A25	66	1	NM_001004488	exon1	c.C24T	p.I8I	TTCCATCACAGAG	.	PASS	Atlas-SNP
FREM2	341640	hgsc.bcm.edu	37	13	39262600	39262600	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	56.0	11.0	61.0	0.0	0.196429	0	.	.	none	.	FREM2	385	.	NM_207361	exon1	c.C1119T	p.T373T	GAGCACCGATGAT	.	PASS	Atlas-SNP
PCLO	27445	hgsc.bcm.edu	37	7	82584908	82584908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	331.0	96.0	505.0	1.0	0.29003	0.0019802	.	.	none	.	PCLO	1506	.	NM_014510	exon5	c.G5361C	p.K1787N	TTGCTCCTTTAAT	.	PASS	Atlas-SNP
CLEC7A	64581	hgsc.bcm.edu	37	12	10278006	10278006	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	56.0	20.0	74.0	0.0	0.357143	0	.	.	none	.	CLEC7A	55	.	NM_197947	exon4	c.G382T	p.E128X	TCTTCTCATATAT	.	PASS	Atlas-SNP
SLC26A7	115111	hgsc.bcm.edu	37	8	92301369	92301369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	466.0	124.0	425.0	1.0	0.266094	0.00235294	.	.	none	SLC26A7_ENST00000309536,rectum,carcinoma,-1,2	SLC26A7	207	2	NM_134266	exon3	c.G199A	p.A67T	GGATTGGCCTTTG	.	PASS	Atlas-SNP
EMC1	23065	hgsc.bcm.edu	37	1	19559222	19559222	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	162.0	43.0	170.0	0.0	0.265432	0	.	.	none	.	.	.	.	NM_015047	exon15	c.T1678A	p.Y560N	GTAGATACTGTTT	.	PASS	Atlas-SNP
ESRP1	54845	hgsc.bcm.edu	37	8	95676969	95676969	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	145.0	59.0	171.0	0.0	0.406897	0	.	.	none	ESRP1_ENST00000433389,NS,carcinoma,+1,2	ESRP1	148	2	NM_001122827	exon7	c.G689A	p.R230Q	GGGCACGAGGTTT	.	PASS	Atlas-SNP
CD1A	909	hgsc.bcm.edu	37	1	158226646	158226646	+	Silent	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	245.0	71.0	242.0	0.0	0.289796	0	.	.	none	.	CD1A	88	.	NM_001763	exon4	c.C675G	p.V225V	CCATGTCTCAGGA	.	PASS	Atlas-SNP
INVS	27130	hgsc.bcm.edu	37	9	103054777	103054777	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	174.0	47.0	122.0	0.0	0.270115	0	.	.	none	.	INVS	81	.	NM_014425	exon14	c.C2238T	p.S746S	GCCCTCCTGTATC	.	PASS	Atlas-SNP
SLC22A4	6583	hgsc.bcm.edu	37	5	131630330	131630330	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	107.0	15.0	95.0	0.0	0.140187	0	.	.	none	.	SLC22A4	45	.	NM_003059	exon1	c.G21A	p.V7V	CGAGGTGATCGCC	.	PASS	Atlas-SNP
ZNF445	353274	hgsc.bcm.edu	37	3	44488625	44488625	+	Silent	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	235.0	75.0	245.0	0.0	0.319149	0	.	.	none	.	ZNF445	91	.	NM_181489	exon8	c.G2538T	p.G846G	GGTTTTCCCACAT	.	PASS	Atlas-SNP
CACNA1H	8912	hgsc.bcm.edu	37	16	1268451	1268451	+	Missense_Mutation	SNP	C	C	T	rs139080716	by1000genomes	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	49.0	20.0	41.0	0.0	0.408163	0	C|0.999;T|0.001	0.001	strong	.	CACNA1H	317	.	NM_021098	exon33	c.C5687T	p.A1896V	TGGACGCGGACAG	.	PASS	Atlas-SNP
KCNK13	56659	hgsc.bcm.edu	37	14	90650648	90650648	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	88.0	26.0	108.0	0.0	0.295455	0	.	.	none	.	KCNK13	76	.	NM_022054	exon2	c.G528A	p.L176L	GAGCCTGAAGGAT	.	PASS	Atlas-SNP
DSCAM	1826	hgsc.bcm.edu	37	21	41648055	41648055	+	Silent	SNP	G	G	A	rs372175757		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	123.0	45.0	148.0	0.0	0.365854	0	.	.	weak	DSCAM,colon,carcinoma,0,1	DSCAM	347	1	NM_001271534	exon11	c.C2325T	p.D775D	GCTGACGTCTGCG	.	PASS	Atlas-SNP
SELL	6402	hgsc.bcm.edu	37	1	169677562	169677562	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	146.0	41.0	181.0	0.0	0.280822	0	.	.	none	.	SELL	43	.	NM_000655	exon3	c.C507T	p.Y169Y	ACCTGTGTAACAG	.	PASS	Atlas-SNP
SH3RF3	344558	hgsc.bcm.edu	37	2	110049003	110049003	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	41.0	15.0	55.0	0.0	0.365854	0	.	.	none	.	SH3RF3	62	.	NM_001099289	exon6	c.G1450A	p.E484K	GAGCTGGAGCTGC	.	PASS	Atlas-SNP
BAIAP2L1	55971	hgsc.bcm.edu	37	7	97991678	97991678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	351.0	59.0	411.0	0.0	0.168091	0	.	.	none	BAIAP2L1,right_upper_lobe,carcinoma,0,1	BAIAP2L1	61	1	NM_018842	exon2	c.G118T	p.A40S	TTACAGCTTTCTC	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90052843	90052843	+	Silent	SNP	C	C	T	rs144269892	bycluster;by1000genomes	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	192.0	26.0	211.0	0.0	0.135417	0	C|0.998;T|0.002	0.002	strong	.	GPR98	605	.	NM_032119	exon57	c.C11805T	p.N3935N	CTTGAACGTTCTT	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532	bycluster	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	205.0	21.0	215.0	0.0	0.102439	0	C|0.500;T|0.500	0.500	weak	.	ZNF814	93	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	PASS	Atlas-SNP
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691	bycluster	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	211.0	20.0	221.0	0.0	0.0947867	0	G|0.500;T|0.500	0.500	weak	.	ZNF814	93	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	PASS	Atlas-SNP
BANP	54971	hgsc.bcm.edu	37	16	88039846	88039846	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	58.0	15.0	57.0	0.0	0.258621	0	.	.	none	.	BANP	67	.	NM_001173542	exon6	c.C630T	p.V210V	CAACGTCACGCTC	.	PASS	Atlas-SNP
ABLIM3	22885	hgsc.bcm.edu	37	5	148620293	148620293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	71.0	43.0	72.0	0.0	0.605634	0	.	.	none	.	ABLIM3	91	.	NM_014945	exon14	c.C1259G	p.S420C	GGTCCTCCACTCC	.	PASS	Atlas-SNP
C1orf112	55732	hgsc.bcm.edu	37	1	169821960	169821960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	119.0	31.0	174.0	0.0	0.260504	0	.	.	none	.	C1orf112	74	.	NM_018186	exon24	c.C2394A	p.F798L	GGAGTTCCCCTGG	.	PASS	Atlas-SNP
GABRQ	55879	hgsc.bcm.edu	37	X	151817742	151817742	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	153.0	60.0	200.0	0.0	0.392157	0	.	.	none	.	GABRQ	131	.	NM_018558	exon5	c.G556C	p.D186H	TCCCTGGATCTGC	.	PASS	Atlas-SNP
PTPRC	5788	hgsc.bcm.edu	37	1	198685901	198685901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	499.0	156.0	554.0	1.0	0.312625	0.00180505	.	.	none	.	PTPRC	229	.	NM_002838	exon13	c.C1382T	p.A461V	TACATGCCTACAT	.	PASS	Atlas-SNP
ZNF513	130557	hgsc.bcm.edu	37	2	27601207	27601207	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	22.0	7.0	12.0	0.0	0.318182	0	.	.	none	.	ZNF513	45	.	NM_144631	exon4	c.T831C	p.H277H	TGGCACATGGAGG	.	PASS	Atlas-SNP
FOXRED2	80020	hgsc.bcm.edu	37	22	36886232	36886232	+	Silent	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	49.0	14.0	49.0	0.0	0.285714	0	.	.	none	FOXRED2,right_upper_lobe,carcinoma,0,1	FOXRED2	48	1	NM_001102371	exon9	c.G1878C	p.V626V	GGTACTCACGAGT	.	PASS	Atlas-SNP
FRMD4B	23150	hgsc.bcm.edu	37	3	69237039	69237039	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	110.0	24.0	91.0	0.0	0.218182	0	.	.	none	.	FRMD4B	90	.	NM_015123	exon19	c.C1801T	p.R601X	TTGATCGCTGCCC	.	PASS	Atlas-SNP
CEP85	64793	hgsc.bcm.edu	37	1	26601519	26601519	+	Missense_Mutation	SNP	G	G	T	rs201784964	alternate_allele	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	103.0	33.0	88.0	0.0	0.320388	0	G|0.998;A|0.002	.	alt	.	CEP85	61	.	NM_022778	exon12	c.G1859T	p.R620L	CCCAGCGAAGGGA	.	PASS	Atlas-SNP
CBFA2T3	863	hgsc.bcm.edu	37	16	89043112	89043112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	102.0	38.0	102.0	0.0	0.372549	0	.	.	none	.	CBFA2T3	47	.	NM_005187	exon1	c.C104T	p.A35V	GCAGATGCCAGGA	.	PASS	Atlas-SNP
AGBL3	340351	hgsc.bcm.edu	37	7	134730655	134730655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	126.0	37.0	189.0	0.0	0.293651	0	.	.	none	.	AGBL3	45	.	NM_178563	exon11	c.G1834A	p.E612K	GATGTAGAGTCTA	.	PASS	Atlas-SNP
ASIC5	51802	hgsc.bcm.edu	37	4	156757920	156757920	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	138.0	46.0	182.0	0.0	0.333333	0	.	.	none	.	.	.	.	NM_017419	exon8	c.A1156C	p.I386L	AAGAAATAGTGGC	.	PASS	Atlas-SNP
EDA	1896	hgsc.bcm.edu	37	X	69253328	69253328	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	74.0	21.0	139.0	0.0	0.283784	0	.	.	none	.	EDA	61	.	NM_001399	exon7	c.G874C	p.E292Q	AGCGGGGAGCTGG	.	PASS	Atlas-SNP
CCSER1	401145	hgsc.bcm.edu	37	4	91230610	91230610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	145.0	21.0	185.0	0.0	0.144828	0	.	.	none	.	.	.	.	NM_001145065	exon2	c.G1175A	p.R392K	CCCCAAGGAAACT	.	PASS	Atlas-SNP
USP24	23358	hgsc.bcm.edu	37	1	55587126	55587126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	198.0	49.0	204.0	0.0	0.247475	0	.	.	none	.	USP24	323	.	NM_015306	exon37	c.G4330A	p.G1444R	GTGATCCGAGCAG	.	PASS	Atlas-SNP
EIF3L	51386	hgsc.bcm.edu	37	22	38270414	38270414	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	161.0	49.0	175.0	0.0	0.304348	0	.	.	none	.	EIF3L	35	.	NM_016091	exon9	c.C789A	p.H263Q	GCGGCACTCCCTC	.	PASS	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	37	1	226924770	226924770	+	Silent	SNP	C	C	T	rs144653273	by1000genomes	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	48.0	17.0	59.0	0.0	0.354167	0	C|1.000;T|0.000	0.000	strong	.	ITPKB	158	.	NM_002221	exon2	c.G390A	p.K130K	CCGCAGCTTCCTC	.	PASS	Atlas-SNP
TNPO1	3842	hgsc.bcm.edu	37	5	72189245	72189245	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	105.0	13.0	102.0	0.0	0.12381	0	.	.	none	.	TNPO1	90	.	NM_002270	exon17	c.A1938C	p.K646N	AGATAAAGATTTT	.	PASS	Atlas-SNP
TMPRSS6	164656	hgsc.bcm.edu	37	22	37485626	37485626	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	87.0	27.0	101.0	0.0	0.310345	0	.	.	none	.	TMPRSS6	99	.	NM_153609	exon7	c.C855T	p.L285L	GGTGATGAGCCTC	.	PASS	Atlas-SNP
JARID2	3720	hgsc.bcm.edu	37	6	15504821	15504821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	43.0	23.0	42.0	0.0	0.534884	0	.	.	none	.	JARID2	135	.	NM_004973	exon9	c.G2539A	p.E847K	GAAATCGAGGTGA	.	PASS	Atlas-SNP
SPRED2	200734	hgsc.bcm.edu	37	2	65561836	65561836	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	162.0	51.0	189.0	0.0	0.314815	0	.	.	none	.	SPRED2	70	.	NM_181784	exon3	c.G276C	p.K92N	ATCGACCTTCCAG	.	PASS	Atlas-SNP
GTPBP8	29083	hgsc.bcm.edu	37	3	112719765	112719765	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	99.0	32.0	98.0	0.0	0.323232	0	.	.	none	.	GTPBP8	22	.	NM_014170	exon6	c.A854G	p.X285X	TTGACTAATGGTT	.	PASS	Atlas-SNP
JMJD1C	221037	hgsc.bcm.edu	37	10	64967691	64967691	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	193.0	48.0	182.0	0.0	0.248705	0	.	.	none	.	JMJD1C	347	.	NM_032776	exon10	c.A3738T	p.E1246D	CTGTGATTCTTGA	.	PASS	Atlas-SNP
FAM26E	254228	hgsc.bcm.edu	37	6	116836827	116836827	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	224.0	62.0	285.0	0.0	0.276786	0	.	.	none	FAM26E,NS,carcinoma,+1,1	FAM26E	26	1	NM_153711	exon2	c.G605A	p.R202H	ATGCTCGCTGCCG	.	PASS	Atlas-SNP
KCNH8	131096	hgsc.bcm.edu	37	3	19322823	19322823	+	Splice_Site	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	129.0	39.0	150.0	0.0	0.302326	0	.	.	none	.	KCNH8	189	.	NM_144633	exon3	c.442+2T>C	.	AGAAGGTTTGTAC	.	PASS	Atlas-SNP
CTRC	11330	hgsc.bcm.edu	37	1	15771170	15771170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	101.0	10.0	108.0	0.0	0.0990099	0	.	.	none	.	CTRC	28	.	NM_007272	exon6	c.G563A	p.R188K	GCTCCAGGATTGA	.	PASS	Atlas-SNP
ERCC6L	54821	hgsc.bcm.edu	37	X	71426262	71426262	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	225.0	64.0	273.0	0.0	0.284444	0	.	.	none	.	ERCC6L	98	.	NM_017669	exon2	c.G2355A	p.E785E	TTGTTTCTCACCC	.	PASS	Atlas-SNP
ZFC3H1	196441	hgsc.bcm.edu	37	12	72038798	72038798	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	376.0	118.0	469.0	0.0	0.31383	0	.	.	none	.	ZFC3H1	172	.	NM_144982	exon4	c.C1138T	p.Q380X	CTGACTGAAGAGC	.	PASS	Atlas-SNP
ABT1	29777	hgsc.bcm.edu	37	6	26598677	26598677	+	Missense_Mutation	SNP	C	C	T	rs367868700	alternate_allele	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	116.0	51.0	105.0	0.0	0.439655	0	.	.	alt	.	ABT1	39	.	NM_013375	exon3	c.C623T	p.S208F	ATGGCTCCTGGAC	.	PASS	Atlas-SNP
DPYD	1806	hgsc.bcm.edu	37	1	98187169	98187169	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	182.0	61.0	243.0	0.0	0.335165	0	.	.	none	.	DPYD	219	.	NM_000110	exon5	c.G380A	p.G127E	ACCATTCCACAAG	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121219248	121219248	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	208.0	68.0	136.0	0.0	0.326923	0	.	.	none	.	COL14A1	292	.	NM_021110	exon10	c.T1106G	p.F369C	GAAGCTTTATGGT	.	PASS	Atlas-SNP
TRMT5	57570	hgsc.bcm.edu	37	14	61446275	61446275	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	238.0	28.0	282.0	0.0	0.117647	0	.	.	none	.	TRMT5	44	.	NM_020810	exon2	c.A341G	p.K114R	GCCCTTTTTAGGG	.	PASS	Atlas-SNP
OPRM1	4988	hgsc.bcm.edu	37	6	154411241	154411241	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	82.0	36.0	91.0	0.0	0.439024	0	.	.	none	.	OPRM1	241	.	NM_001145279	exon4	c.G850A	p.V284I	ATCAATGTCTGCA	.	PASS	Atlas-SNP
OBSCN	84033	hgsc.bcm.edu	37	1	228471339	228471339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	77.0	23.0	105.0	0.0	0.298701	0	.	.	none	.	OBSCN	2142	.	NM_001271223	exon38	c.C10160T	p.S3387L	GGGCCTCAGGGAA	.	PASS	Atlas-SNP
RNASE3	6037	hgsc.bcm.edu	37	14	21360199	21360199	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	129.0	42.0	144.0	0.0	0.325581	0	.	.	none	.	RNASE3	24	.	NM_002935	exon2	c.G354A	p.Q118Q	TGCACAGAATATT	.	PASS	Atlas-SNP
PDE1B	5153	hgsc.bcm.edu	37	12	54963009	54963009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	79.0	38.0	105.0	0.0	0.481013	0	.	.	none	.	PDE1B	76	.	NM_000924	exon4	c.C269T	p.S90L	TGCGGTCAGATGC	.	PASS	Atlas-SNP
AVIL	10677	hgsc.bcm.edu	37	12	58197374	58197374	+	Nonsense_Mutation	SNP	C	C	A	rs143313987	alternate_allele	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	98.0	21.0	101.0	0.0	0.214286	0	C|1.000;T|0.000	.	alt	.	AVIL	60	.	NM_006576	exon14	c.G1750T	p.E584X	GGCCCTCGGCCAC	.	PASS	Atlas-SNP
P2RY8	286530	hgsc.bcm.edu	37	X	1584685	1584685	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	61.0	28.0	98.0	0.0	0.459016	0	.	.	none	.	P2RY8	53	.	NM_178129	exon2	c.T767C	p.V256A	AGGAGCACGAAGT	.	PASS	Atlas-SNP
KIAA1024	23251	hgsc.bcm.edu	37	15	79749276	79749276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	138.0	18.0	190.0	0.0	0.130435	0	.	.	none	KIAA1024,NS,carcinoma,0,1	KIAA1024	146	1	NM_015206	exon2	c.G787A	p.D263N	AAAGAGGATTTTC	.	PASS	Atlas-SNP
ZSCAN20	7579	hgsc.bcm.edu	37	1	33960285	33960285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	90.0	32.0	95.0	0.0	0.355556	0	.	.	none	.	ZSCAN20	107	.	NM_145238	exon8	c.C2341T	p.L781F	TCTAATCTCATCA	.	PASS	Atlas-SNP
SULT1B1	27284	hgsc.bcm.edu	37	4	70615486	70615486	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	231.0	38.0	274.0	0.0	0.164502	0	.	.	none	.	SULT1B1	46	.	NM_014465	exon4	c.C328T	p.L110L	TCGGTAGATGTGT	.	PASS	Atlas-SNP
PRB1	5542	hgsc.bcm.edu	37	12	11508468	11508468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	138.0	27.0	134.0	0.0	0.195652	0	.	.	none	.	PRB1	33	.	NM_199353	exon1	c.C20A	p.S7X	GCCACTGACAGCA	.	PASS	Atlas-SNP
NR2E1	7101	hgsc.bcm.edu	37	6	108499427	108499427	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	89.0	19.0	102.0	0.0	0.213483	0	.	.	none	NR2E1,NS,carcinoma,0,1	NR2E1	57	1	NM_003269	exon5	c.G624A	p.T208T	CTCCACGCTGTCT	.	PASS	Atlas-SNP
DUSP16	80824	hgsc.bcm.edu	37	12	12653527	12653527	+	Missense_Mutation	SNP	G	G	C	rs369986596		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	114.0	38.0	110.0	0.0	0.333333	0	.	.	weak	.	DUSP16	64	.	NM_030640	exon4	c.C457G	p.P153A	CAACAGGTAAGCA	.	PASS	Atlas-SNP
MET	4233	hgsc.bcm.edu	37	7	116422095	116422095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	120.0	21.0	140.0	0.0	0.175	0	.	.	none	.	MET	412	.	NM_001127500	exon18	c.G3630A	p.M1210I	AGGCATGAAATAT	.	PASS	Atlas-SNP
DNHD1	144132	hgsc.bcm.edu	37	11	6567484	6567484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	107.0	53.0	103.0	0.0	0.495327	0	.	.	none	DNHD1,NS,carcinoma,+1,2	DNHD1	198	2	NM_144666	exon21	c.G5315A	p.R1772Q	CTTCCCGAAACAC	.	PASS	Atlas-SNP
TGS1	96764	hgsc.bcm.edu	37	8	56715141	56715141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	69.0	11.0	70.0	0.0	0.15942	0	.	.	none	.	TGS1	66	.	NM_024831	exon9	c.G1975C	p.D659H	CGTTTTGATGATG	.	PASS	Atlas-SNP
FANCL	55120	hgsc.bcm.edu	37	2	58459217	58459217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	126.0	40.0	135.0	0.0	0.31746	0	.	.	none	.	FANCL	35	.	NM_018062	exon2	c.C127T	p.P43S	CTTCAGGCAACAC	.	PASS	Atlas-SNP
CDCA7	83879	hgsc.bcm.edu	37	2	174224116	174224116	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	232.0	71.0	200.0	0.0	0.306034	0	.	.	none	.	CDCA7	48	.	NM_031942	exon3	c.A281G	p.K94R	TACAGAAACCAAG	.	PASS	Atlas-SNP
MAGI1	9223	hgsc.bcm.edu	37	3	65376868	65376868	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	138.0	45.0	176.0	0.0	0.326087	0	.	.	none	MAGI1_ENST00000402939,NS,lymphoid_neoplasm,0,4	MAGI1	481	4	NM_001033057	exon14	c.C2365A	p.P789T	GATCTGGTTTTTT	.	PASS	Atlas-SNP
MYCBP2	23077	hgsc.bcm.edu	37	13	77754319	77754319	+	Silent	SNP	G	G	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	206.0	62.0	182.0	0.0	0.300971	0	.	.	none	.	MYCBP2	1029	.	NM_015057	exon34	c.C5076A	p.T1692T	TCCACAGGTGTTA	.	PASS	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124272402	124272402	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	61.0	11.0	70.0	0.0	0.180328	0	.	.	none	.	DNAH10	888	.	NM_207437	exon10	c.C1290T	p.L430L	CACCCTCAGGCTG	.	PASS	Atlas-SNP
ZNF366	167465	hgsc.bcm.edu	37	5	71756780	71756780	+	Missense_Mutation	SNP	G	G	C	rs140439481	bycluster;byfrequency	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	73.0	40.0	80.0	0.0	0.547945	0	G|1.000;C|0.000	0.000	strong	.	ZNF366	108	.	NM_152625	exon2	c.C544G	p.P182A	GGCCCGGGTGGAC	.	PASS	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	37	5	160047422	160047422	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	141.0	15.0	167.0	0.0	0.106383	0	.	.	none	.	ATP10B	201	.	NM_025153	exon15	c.G2348A	p.G783D	ATCTCGCCAGTCA	.	PASS	Atlas-SNP
HECTD1	25831	hgsc.bcm.edu	37	14	31598253	31598253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	211.0	34.0	280.0	0.0	0.161137	0	.	.	none	.	HECTD1	159	.	NM_015382	exon25	c.T4324A	p.S1442T	AAGATGACCCTAC	.	PASS	Atlas-SNP
SMC2	10592	hgsc.bcm.edu	37	9	106875690	106875690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	279.0	104.0	270.0	0.0	0.37276	0	.	.	none	.	SMC2	127	.	NM_006444	exon11	c.G1348T	p.A450S	CAAGAAGCTCTAG	.	PASS	Atlas-SNP
SPATS2L	26010	hgsc.bcm.edu	37	2	201284179	201284179	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	90.0	31.0	147.0	0.0	0.344444	0	.	.	none	.	SPATS2L	88	.	NM_001100423	exon6	c.G405C	p.S135S	GATCTCGATACTT	.	PASS	Atlas-SNP
NRK	203447	hgsc.bcm.edu	37	X	105153118	105153118	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	161.0	15.0	236.0	0.0	0.0931677	0	.	.	none	.	NRK	321	.	NM_198465	exon13	c.C1485T	p.S495S	ACAGTCCCAGGTA	.	PASS	Atlas-SNP
DNAH10	196385	hgsc.bcm.edu	37	12	124359986	124359986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	143.0	38.0	179.0	0.0	0.265734	0	.	.	none	.	DNAH10	888	.	NM_207437	exon46	c.C7793T	p.S2598L	TTCCTTCAGAGGA	.	PASS	Atlas-SNP
KCTD20	222658	hgsc.bcm.edu	37	6	36447473	36447473	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	64.0	29.0	63.0	0.0	0.453125	0	.	.	none	KCTD20,rectum,carcinoma,-1,1	KCTD20	37	1	NM_173562	exon5	c.C643T	p.R215X	ACTATCCGATGTC	.	PASS	Atlas-SNP
RNFT1	51136	hgsc.bcm.edu	37	17	58034594	58034594	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	142.0	61.0	135.0	0.0	0.429577	0	.	.	none	RNFT1_ENST00000305783,NS,carcinoma,0,1	RNFT1	30	1	NM_016125	exon6	c.C996T	p.L332L	TAATATGAGGTAG	.	PASS	Atlas-SNP
PDP1	54704	hgsc.bcm.edu	37	8	94935821	94935821	+	Nonsense_Mutation	SNP	C	C	T	rs202225648		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	127.0	14.0	97.0	0.0	0.110236	0	C|0.999;T|0.001	0.001	weak	PDP1,rectum,carcinoma,-1,1	PDP1	97	1	NM_001161780	exon3	c.C1609T	p.R537X	CTTGCTCGAATGT	.	PASS	Atlas-SNP
ZNF266	10781	hgsc.bcm.edu	37	19	9524292	9524292	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	100.0	34.0	105.0	0.0	0.34	0	.	.	none	.	ZNF266	65	.	NM_001271314	exon11	c.G1309C	p.E437Q	GGCACTCAAAGGG	.	PASS	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158622386	158622386	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	161.0	23.0	179.0	0.0	0.142857	0	.	.	none	.	SPTA1	720	.	NM_003126	exon23	c.T3246A	p.Y1082X	TTCATTATAACGT	.	PASS	Atlas-SNP
APOB	338	hgsc.bcm.edu	37	2	21241890	21241890	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	132.0	34.0	198.0	0.0	0.257576	0	.	.	none	.	APOB	761	.	NM_000384	exon20	c.C3095G	p.T1032S	TTCAGGGTATCCA	.	PASS	Atlas-SNP
AARS2	57505	hgsc.bcm.edu	37	6	44274068	44274068	+	Missense_Mutation	SNP	G	G	A	rs143703625	byfrequency;alternate_allele	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	72.0	12.0	75.0	0.0	0.166667	0	G|0.999;T|0.001	.	alt	.	AARS2	77	.	NM_020745	exon9	c.C1249T	p.R417W	TGATCCGCCTACC	.	PASS	Atlas-SNP
GPR98	84059	hgsc.bcm.edu	37	5	90151709	90151709	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	225.0	115.0	230.0	0.0	0.511111	0	.	.	none	.	GPR98	605	.	NM_032119	exon82	c.T17746C	p.C5916R	TTTATATGTATCT	.	PASS	Atlas-SNP
YES1	7525	hgsc.bcm.edu	37	18	743032	743032	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	293.0	25.0	258.0	0.0	0.0853242	0	.	.	none	.	YES1	50	.	NM_005433	exon8	c.G946A	p.A316T	GGAAAGCTTCTGG	.	PASS	Atlas-SNP
XPO1	7514	hgsc.bcm.edu	37	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	278.0	84.0	301.0	0.0	0.302158	0	.	.	none	XPO1,NS,carcinoma,0,17	XPO1	108	17	NM_003400	exon15	c.G1711A	p.E571K	TGAATTCGAACAG	.	PASS	Atlas-SNP
POU3F4	5456	hgsc.bcm.edu	37	X	82764220	82764220	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	113.0	19.0	158.0	0.0	0.168142	0	.	.	none	.	POU3F4	136	.	NM_000307	exon1	c.T888C	p.H296H	GACGCATTTCCTC	.	PASS	Atlas-SNP
QRFPR	84109	hgsc.bcm.edu	37	4	122250653	122250653	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	298.0	28.0	385.0	1.0	0.0939597	0.0025974	.	.	none	QRFPR,NS,carcinoma,-1,1	QRFPR	65	1	NM_198179	exon6	c.G1112A	p.R371Q	TTCTTCCGCATCA	.	scavenged	Atlas-SNP
SPTA1	6708	hgsc.bcm.edu	37	1	158614070	158614070	+	Silent	SNP	G	G	A	rs189877287	bycluster;by1000genomes	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	145.0	17.0	186.0	0.0	0.117241	0	G|1.000;A|0.000	0.000	strong	SPTA1,NS,carcinoma,0,1	SPTA1	720	1	NM_003126	exon30	c.C4311T	p.D1437D	CAAATCGTCCCGT	.	PASS	Atlas-SNP
SLC32A1	140679	hgsc.bcm.edu	37	20	37356863	37356863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	101.0	27.0	100.0	0.0	0.267327	0	.	.	none	.	SLC32A1	81	.	NM_080552	exon2	c.G1159A	p.V387M	TTTCTGGTGGCCA	.	PASS	Atlas-SNP
C10orf137	26098	hgsc.bcm.edu	37	10	127429569	127429569	+	Splice_Site	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	209.0	50.0	254.0	0.0	0.239234	0	.	.	none	.	C10orf137	153	.	NM_001202438	exon17	c.2171-1G>A	.	TAAACAGATACTT	.	PASS	Atlas-SNP
SLC4A1AP	22950	hgsc.bcm.edu	37	2	27886844	27886844	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	62.0	19.0	66.0	0.0	0.306452	0	.	.	none	.	SLC4A1AP	63	.	NM_018158	exon1	c.G225A	p.K75K	CTTCAAGAAGCCA	.	PASS	Atlas-SNP
HKDC1	80201	hgsc.bcm.edu	37	10	70998835	70998835	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	88.0	28.0	96.0	0.0	0.318182	0	.	.	none	HKDC1,NS,carcinoma,+1,2	HKDC1	98	2	NM_025130	exon5	c.G533A	p.R178Q	AGGCACGAGGAGT	.	PASS	Atlas-SNP
ZBTB40	9923	hgsc.bcm.edu	37	1	22838349	22838349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	104.0	33.0	110.0	0.0	0.317308	0	.	.	none	.	ZBTB40	87	.	NM_001083621	exon12	c.C2183T	p.S728F	CAGCCTCCCCAGA	.	PASS	Atlas-SNP
PABPC3	5042	hgsc.bcm.edu	37	13	25672209	25672209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	48.0	21.0	52.0	0.0	0.4375	0	.	.	none	.	PABPC3	129	.	NM_030979	exon1	c.G1873A	p.A625T	AACAGTGCTACCG	.	PASS	Atlas-SNP
NEBL	10529	hgsc.bcm.edu	37	10	21309114	21309114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	171.0	48.0	180.0	0.0	0.280702	0	.	.	none	.	NEBL	199	.	NM_001173484	exon3	c.T181C	p.S61P	TGAAGGACTGCTT	.	PASS	Atlas-SNP
HOXC13	3229	hgsc.bcm.edu	37	12	54339026	54339026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	42.0	13.0	55.0	0.0	0.309524	0	.	.	none	.	HOXC13	24	.	NM_017410	exon2	c.C979T	p.L327F	CCTCATCTCCACT	.	PASS	Atlas-SNP
C11orf87	399947	hgsc.bcm.edu	37	11	109294503	109294503	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	139.0	23.0	219.0	1.0	0.165468	0.00456621	.	.	none	C11orf87,NS,carcinoma,+1,1	C11orf87	37	1	NM_207645	exon2	c.G144A	p.T48T	CATCACGCAGGTG	.	scavenged	Atlas-SNP
ZNF501	115560	hgsc.bcm.edu	37	3	44776170	44776170	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	94.0	16.0	99.0	0.0	0.170213	0	.	.	none	.	ZNF501	27	.	NM_001258280	exon3	c.C257T	p.A86V	AGAAAGCCTTTCA	.	PASS	Atlas-SNP
C18orf54	162681	hgsc.bcm.edu	37	18	51904570	51904570	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	172.0	40.0	145.0	0.0	0.232558	0	.	.	none	.	C18orf54	40	.	NM_173529	exon8	c.G1073C	p.R358T	GCCTGAGAGACCT	.	PASS	Atlas-SNP
TRIM25	7706	hgsc.bcm.edu	37	17	54969281	54969281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	82.0	29.0	101.0	0.0	0.353659	0	.	.	none	.	TRIM25	52	.	NM_005082	exon9	c.T1673A	p.I558N	GCAGAGATCTTGG	.	PASS	Atlas-SNP
ZNF217	7764	hgsc.bcm.edu	37	20	52198236	52198236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	132.0	50.0	131.0	0.0	0.378788	0	.	.	none	.	ZNF217	227	.	NM_006526	exon1	c.G1130A	p.C377Y	TCGGAGCAGTGAG	.	PASS	Atlas-SNP
RPL7	6129	hgsc.bcm.edu	37	8	74204061	74204061	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	97.0	21.0	85.0	0.0	0.216495	0	.	.	none	.	RPL7	20	.	NM_000971	exon4	c.C375G	p.L125L	CTTGTTGAGCTTC	.	PASS	Atlas-SNP
DNAJC7	7266	hgsc.bcm.edu	37	17	40128785	40128785	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	58.0	21.0	57.0	0.0	0.362069	0	.	.	none	.	DNAJC7	51	.	NM_003315	exon14	c.C1451G	p.S484C	GGACCAGATGCTG	.	PASS	Atlas-SNP
IQCC	55721	hgsc.bcm.edu	37	1	32672879	32672879	+	Silent	SNP	G	G	A	rs201910762	by1000genomes	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	76.0	30.0	96.0	0.0	0.394737	0	G|1.000;A|0.000	0.000	strong	.	IQCC	46	.	NM_001160042	exon5	c.G837A	p.A279A	AGAGGCGGGCCCG	.	PASS	Atlas-SNP
TPR	7175	hgsc.bcm.edu	37	1	186313566	186313566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	152.0	20.0	196.0	0.0	0.131579	0	.	.	none	.	TPR	441	.	NM_003292	exon25	c.G3358A	p.A1120T	ATTCTGCTTTCTG	.	PASS	Atlas-SNP
CTTNBP2	83992	hgsc.bcm.edu	37	7	117400606	117400606	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	191.0	74.0	313.0	0.0	0.387435	0	.	.	none	.	CTTNBP2	200	.	NM_033427	exon10	c.A3055C	p.N1019H	AATGATTTGTCAG	.	PASS	Atlas-SNP
MYT1L	23040	hgsc.bcm.edu	37	2	1926161	1926161	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	203.0	58.0	268.0	0.0	0.285714	0	.	.	none	.	MYT1L	241	.	NM_015025	exon10	c.C1380G	p.D460E	CATATTGTCCCTC	.	PASS	Atlas-SNP
CHEK2	11200	hgsc.bcm.edu	37	22	29130412	29130412	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	78.0	20.0	65.0	0.0	0.25641	0	.	.	none	.	CHEK2	438	.	NM_145862	exon2	c.C298T	p.Q100X	CATCCTGAAGGGC	.	PASS	Atlas-SNP
KIAA0922	23240	hgsc.bcm.edu	37	4	154525477	154525477	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	204.0	55.0	215.0	0.0	0.269608	0	.	.	none	.	KIAA0922	214	.	NM_001131007	exon25	c.C3313A	p.L1105I	CGGGAGCTCTGTC	.	PASS	Atlas-SNP
IFNA14	3448	hgsc.bcm.edu	37	9	21239704	21239704	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	178.0	41.0	154.0	0.0	0.230337	0	.	.	none	.	IFNA14	29	.	NM_002172	exon1	c.C231T	p.I77I	GACAGAGATGGCT	.	PASS	Atlas-SNP
EVC	2121	hgsc.bcm.edu	37	4	5811258	5811258	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	55.0	18.0	65.0	0.0	0.327273	0	.	.	none	.	EVC	90	.	NM_153717	exon19	c.A2702C	p.N901T	AACAGAACTTCAT	.	PASS	Atlas-SNP
SGPL1	8879	hgsc.bcm.edu	37	10	72633215	72633215	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	113.0	13.0	139.0	0.0	0.115044	0	.	.	none	.	SGPL1	37	.	NM_003901	exon12	c.C1167T	p.S389S	TGCTTCCCCAACC	.	PASS	Atlas-SNP
ALX1	8092	hgsc.bcm.edu	37	12	85677538	85677538	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	118.0	27.0	143.0	0.0	0.228814	0	.	.	none	.	ALX1	61	.	NM_006982	exon2	c.T415G	p.F139V	ACCACCTTCACCA	.	PASS	Atlas-SNP
GRIN2C	2905	hgsc.bcm.edu	37	17	72846900	72846900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	58.0	18.0	87.0	0.0	0.310345	0	.	.	none	.	GRIN2C	144	.	NM_000835	exon5	c.C1120T	p.R374C	CCCAGCGCCCCAC	.	PASS	Atlas-SNP
HIST1H3D	8351	hgsc.bcm.edu	37	6	26197219	26197219	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	132.0	21.0	151.0	0.0	0.159091	0	.	.	none	.	HIST1H3D	31	.	NM_003530	exon2	c.G260C	p.S87T	GCCGAGCTCTGAA	.	PASS	Atlas-SNP
SCN7A	6332	hgsc.bcm.edu	37	2	167298253	167298253	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	172.0	47.0	224.0	0.0	0.273256	0	.	.	none	.	SCN7A	410	.	NM_002976	exon14	c.T1810A	p.F604I	ACTTGAAAATTCT	.	PASS	Atlas-SNP
COX2	5743	hgsc.bcm.edu	37	MT	8160	8160	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	30.0	26.0	5.0	0.0	0.866667	0	.	.	none	.	.	.	.	ENST00000361739	exon1	c.A575G	p.Y192C	GGGTATACTACGG	.	PASS	Atlas-SNP
CLTB	1212	hgsc.bcm.edu	37	5	175824641	175824641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	133.0	15.0	129.0	0.0	0.112782	0	.	.	none	.	CLTB	17	.	NM_001834	exon4	c.G431A	p.S144N	TGTTCACTCTGGC	.	PASS	Atlas-SNP
SDHC	6391	hgsc.bcm.edu	37	1	161298187	161298187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	58.0	17.0	62.0	0.0	0.293103	0	.	.	none	.	SDHC	19	.	NM_001035511	exon3	c.G79A	p.A27T	TTTAGTGCTGTTC	.	PASS	Atlas-SNP
FAM120C	54954	hgsc.bcm.edu	37	X	54209068	54209068	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	74.0	27.0	140.0	0.0	0.364865	0	.	.	none	.	FAM120C	89	.	NM_017848	exon1	c.G564A	p.Q188Q	CTCGGCCTGGCAC	.	PASS	Atlas-SNP
RAB6B	51560	hgsc.bcm.edu	37	3	133557035	133557035	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	63.0	21.0	86.0	0.0	0.333333	0	.	.	none	RAB6B,NS,carcinoma,+1,1	RAB6B	36	1	NM_016577	exon6	c.C470T	p.A157V	GTCTTCGCACTGG	.	PASS	Atlas-SNP
STK3	6788	hgsc.bcm.edu	37	8	99591963	99591963	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	398.0	33.0	344.0	0.0	0.0829146	0	.	.	none	.	STK3	47	.	NM_001256312	exon10	c.G961A	p.E321K	TAGCTTCTGTGAT	.	PASS	Atlas-SNP
HSPA14	51182	hgsc.bcm.edu	37	10	14893270	14893270	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	97.0	14.0	112.0	0.0	0.14433	0	.	.	none	.	HSPA14	42	.	NM_016299	exon7	c.T520C	p.S174P	GAACCGTCTGCAG	.	PASS	Atlas-SNP
PNPLA5	150379	hgsc.bcm.edu	37	22	44280171	44280171	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	52.0	17.0	78.0	0.0	0.326923	0	.	.	none	PNPLA5,NS,carcinoma,0,1	PNPLA5	46	1	NM_138814	exon7	c.C1004T	p.S335L	GGCCCCGAGTGCC	.	PASS	Atlas-SNP
NT5DC3	51559	hgsc.bcm.edu	37	12	104186994	104186994	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	154.0	42.0	176.0	0.0	0.272727	0	.	.	none	NT5DC3,rectum,carcinoma,0,1	NT5DC3	113	1	NM_001031701	exon9	c.G967T	p.D323Y	CCACATCGAACAG	.	PASS	Atlas-SNP
SLC20A1	6574	hgsc.bcm.edu	37	2	113404650	113404650	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	147.0	47.0	162.0	0.0	0.319728	0	.	.	none	.	SLC20A1	59	.	NM_005415	exon2	c.G245C	p.S82T	AAGTGAGCGAAAC	.	PASS	Atlas-SNP
USP24	23358	hgsc.bcm.edu	37	1	55549034	55549034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	64.0	9.0	69.0	0.0	0.140625	0	.	.	none	.	USP24	323	.	NM_015306	exon58	c.G6886A	p.G2296R	TAATTCCTTGCTG	.	PASS	Atlas-SNP
GPC3	2719	hgsc.bcm.edu	37	X	132833966	132833966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	583.0	200.0	976.0	2.0	0.343053	0.00204918	.	.	none	.	GPC3	88	.	NM_001164617	exon5	c.G1192T	p.V398F	GAGCAACTTTTAA	.	PASS	Atlas-SNP
ND3	0	hgsc.bcm.edu	37	MT	10178	10178	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	29.0	26.0	6.0	0.0	0.896552	0	.	.	none	.	.	.	.	ENST00000361227	exon1	c.C120T	p.G40G	GTGCGGCTTCGAC	.	PASS	Atlas-SNP
TTC3	7267	hgsc.bcm.edu	37	21	38520899	38520899	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	353.0	89.0	331.0	0.0	0.252125	0	.	.	none	.	TTC3	182	.	NM_001001894	exon23	c.T2070C	p.N690N	CATGAATTGCTGG	.	PASS	Atlas-SNP
CDKL1	8814	hgsc.bcm.edu	37	14	50808859	50808859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	133.0	43.0	134.0	0.0	0.323308	0	.	.	none	CDKL1_ENST00000395834,NS,carcinoma,0,2	CDKL1	50	2	NM_004196	exon4	c.C448T	p.R150W	AAAGCCGAGCAAA	.	PASS	Atlas-SNP
COLEC11	78989	hgsc.bcm.edu	37	2	3691387	3691387	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	70.0	16.0	94.0	0.0	0.228571	0	.	.	none	.	COLEC11	93	.	NM_001255985	exon8	c.C537T	p.D179D	CGCGGACGCCCAG	.	PASS	Atlas-SNP
RUNX3	864	hgsc.bcm.edu	37	1	25256143	25256143	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	62.0	24.0	90.0	0.0	0.387097	0	.	.	none	.	RUNX3	72	.	NM_001031680	exon2	c.A259T	p.N87Y	GGAAGTTGGGGCT	.	PASS	Atlas-SNP
SMURF1	57154	hgsc.bcm.edu	37	7	98652487	98652487	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	60.0	16.0	59.0	0.0	0.266667	0	.	.	none	.	SMURF1	58	.	NM_020429	exon6	c.C405G	p.V135V	TAAACTGACTAAA	.	PASS	Atlas-SNP
LEPR	3953	hgsc.bcm.edu	37	1	66101961	66101961	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	239.0	43.0	236.0	0.0	0.179916	0	.	.	none	LEPR_ENST00000349533,colon,carcinoma,0,1	LEPR	284	1	NM_002303	exon20	c.G2761A	p.D921N	TCAGAAGATATCA	.	PASS	Atlas-SNP
OPTN	10133	hgsc.bcm.edu	37	10	13167997	13167997	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	220.0	33.0	249.0	0.0	0.15	0	.	.	none	OPTN,colon,carcinoma,+1,1	OPTN	57	1	NM_001008212	exon11	c.T1200G	p.H400Q	AGAACATAATAAT	.	PASS	Atlas-SNP
PARD3B	117583	hgsc.bcm.edu	37	2	206166288	206166288	+	Silent	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	273.0	41.0	294.0	0.0	0.150183	0	.	.	none	.	PARD3B	314	.	NM_205863	exon18	c.C2493A	p.A831A	TAAAGCCAGGAAA	.	PASS	Atlas-SNP
ACSL3	2181	hgsc.bcm.edu	37	2	223787815	223787815	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	525.0	122.0	596.0	1.0	0.232381	0.00167785	.	.	none	.	ACSL3	107	.	NM_203372	exon9	c.G1100A	p.G367E	AAAAAGGAAGCAA	.	PASS	Atlas-SNP
MUM1	84939	hgsc.bcm.edu	37	19	1357062	1357062	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	240.0	70.0	232.0	0.0	0.291667	0	.	.	none	MUM1,colon,carcinoma,0,1	MUM1	54	1	NM_032853	exon3	c.C115G	p.L39V	TATTTTCTAGCTG	.	PASS	Atlas-SNP
ZNF439	90594	hgsc.bcm.edu	37	19	11979140	11979140	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	98.0	20.0	101.0	0.0	0.204082	0	.	.	none	.	ZNF439	67	.	NM_152262	exon3	c.T1256C	p.F419S	AAGCCTTCAGATC	.	PASS	Atlas-SNP
ABCB8	11194	hgsc.bcm.edu	37	7	150733637	150733637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	24.0	9.0	48.0	0.0	0.375	0	.	.	none	.	ABCB8	65	.	NM_007188	exon9	c.T1118G	p.V373G	GCATGGTCTTGGG	.	PASS	Atlas-SNP
ABHD2	11057	hgsc.bcm.edu	37	15	89694933	89694933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	123.0	46.0	146.0	0.0	0.373984	0	.	.	none	.	ABHD2	55	.	NM_007011	exon8	c.A220G	p.K74E	TGGGGGAAAAGTG	.	PASS	Atlas-SNP
IRX2	153572	hgsc.bcm.edu	37	5	2749795	2749795	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	137.0	28.0	172.0	0.0	0.20438	0	.	.	none	.	IRX2	60	.	NM_001134222	exon2	c.A356G	p.K119R	GCGTTCTTGCGGT	.	PASS	Atlas-SNP
FAM178B	51252	hgsc.bcm.edu	37	2	97637661	97637661	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	124.0	46.0	144.0	0.0	0.370968	0	.	.	none	.	FAM178B	35	.	NM_001122646	exon3	c.A541G	p.S181G	GCTGGCTCAGGCC	.	PASS	Atlas-SNP
METTL16	79066	hgsc.bcm.edu	37	17	2371109	2371109	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	176.0	37.0	228.0	0.0	0.210227	0	.	.	none	.	METTL16	75	.	NM_024086	exon5	c.C531G	p.I177M	GTCATAGATTATC	.	PASS	Atlas-SNP
DTX3L	151636	hgsc.bcm.edu	37	3	122288596	122288596	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	81.0	29.0	75.0	0.0	0.358025	0	.	.	none	.	DTX3L	59	.	NM_138287	exon3	c.G1660C	p.D554H	GAACTGGACAAGA	.	PASS	Atlas-SNP
SWAP70	23075	hgsc.bcm.edu	37	11	9761816	9761816	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	67.0	25.0	48.0	0.0	0.373134	0	.	.	none	.	SWAP70	40	.	NM_015055	exon9	c.A1277G	p.Y426C	ACATGTACCTAAA	.	PASS	Atlas-SNP
GRIN2B	2904	hgsc.bcm.edu	37	12	13717016	13717016	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	167.0	27.0	248.0	0.0	0.161677	0	.	.	none	.	GRIN2B	303	.	NM_000834	exon13	c.C3156T	p.H1052H	GTCGTCGTGGCCA	.	PASS	Atlas-SNP
ANO3	63982	hgsc.bcm.edu	37	11	26538445	26538445	+	Silent	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	182.0	55.0	218.0	0.0	0.302198	0	.	.	none	.	ANO3	145	.	NM_031418	exon6	c.A663C	p.A221A	GTATGCAGAGAGG	.	PASS	Atlas-SNP
HIST4H4	121504	hgsc.bcm.edu	37	12	14923847	14923847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	83.0	12.0	116.0	0.0	0.144578	0	.	.	none	.	HIST4H4	13	.	NM_175054	exon1	c.G172C	p.V58L	TGAGGACTCCCCG	.	PASS	Atlas-SNP
MTMR1	8776	hgsc.bcm.edu	37	X	149899968	149899968	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	219.0	74.0	317.0	0.0	0.3379	0	.	.	none	.	MTMR1	82	.	NM_003828	exon8	c.A744G	p.I248M	GAAAATATCCAAA	.	PASS	Atlas-SNP
AR	367	hgsc.bcm.edu	37	X	66937418	66937418	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	109.0	15.0	168.0	0.0	0.137615	0	.	.	none	.	AR	249	.	NM_000044	exon5	c.G2272C	p.V758L	ACCAATGTCAACT	.	PASS	Atlas-SNP
DCLK1	9201	hgsc.bcm.edu	37	13	36428729	36428729	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	82.0	21.0	111.0	0.0	0.256098	0	.	.	none	.	DCLK1	350	.	NM_004734	exon6	c.T942C	p.V314V	TCCATTAACTAGA	.	PASS	Atlas-SNP
RAB9A	9367	hgsc.bcm.edu	37	X	13727323	13727323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	145.0	22.0	150.0	0.0	0.151724	0	.	.	none	.	RAB9A	17	.	NM_004251	exon3	c.C458T	p.T153I	TTGAAACAAGTGC	.	PASS	Atlas-SNP
DGCR2	9993	hgsc.bcm.edu	37	22	19029399	19029399	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	64.0	21.0	79.0	0.0	0.328125	0	.	.	none	.	DGCR2	45	.	NM_005137	exon8	c.C1080T	p.I360I	TGACAGGATGAGG	.	PASS	Atlas-SNP
RHOBTB2	23221	hgsc.bcm.edu	37	8	22865187	22865187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	47.0	12.0	32.0	0.0	0.255319	0	.	.	none	.	RHOBTB2	67	.	NM_001160036	exon7	c.G1495A	p.E499K	AACCAGGAGATCA	.	PASS	Atlas-SNP
ENOSF1	55556	hgsc.bcm.edu	37	18	697244	697244	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	141.0	50.0	112.0	0.0	0.35461	0	.	.	none	.	ENOSF1	44	.	NM_202758	exon3	c.G368T	p.R123I	ACCCATCTGAGCT	.	PASS	Atlas-SNP
OR56A3	390083	hgsc.bcm.edu	37	11	5968801	5968801	+	Missense_Mutation	SNP	C	C	G	rs200944882	by1000genomes;alternate_allele	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	142.0	57.0	171.0	0.0	0.401408	0	C|1.000;T|0.000	.	alt	.	OR56A3	81	.	NM_001003443	exon1	c.C225G	p.I75M	GGACATCGTGCTC	.	PASS	Atlas-SNP
ATP10B	23120	hgsc.bcm.edu	37	5	160025799	160025799	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	117.0	14.0	113.0	0.0	0.119658	0	.	.	none	.	ATP10B	201	.	NM_025153	exon22	c.A3542C	p.Y1181S	CTCTTGTATAGCT	.	PASS	Atlas-SNP
CCDC164	92749	hgsc.bcm.edu	37	2	26652610	26652610	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	96.0	32.0	107.0	0.0	0.333333	0	.	.	none	.	CCDC164	84	.	NM_145038	exon5	c.C655T	p.R219C	ACCTTTCGTGAGG	.	PASS	Atlas-SNP
SRM	6723	hgsc.bcm.edu	37	1	11115065	11115065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	118.0	20.0	145.0	0.0	0.169492	0	.	.	none	SRM,NS,carcinoma,+1,1	SRM	18	1	NM_003132	exon7	c.C842G	p.S281C	ACGTCGGAGTTGT	.	PASS	Atlas-SNP
HMCN1	83872	hgsc.bcm.edu	37	1	185953339	185953339	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	171.0	32.0	176.0	0.0	0.187135	0	.	.	none	.	HMCN1	797	.	NM_031935	exon19	c.G2829A	p.G943G	TGATGGGAGCCTC	.	PASS	Atlas-SNP
REV3L	5980	hgsc.bcm.edu	37	6	111685068	111685068	+	Silent	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	190.0	25.0	197.0	0.0	0.131579	0	.	.	none	.	REV3L	386	.	NM_002912	exon16	c.A6867G	p.K2289K	TAAAGCTTTTGCC	.	PASS	Atlas-SNP
MANBA	4126	hgsc.bcm.edu	37	4	103585914	103585914	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	251.0	79.0	288.0	0.0	0.314741	0	.	.	none	.	MANBA	78	.	NM_005908	exon11	c.C1413T	p.F471F	GTCAGTGAAACTG	.	PASS	Atlas-SNP
TNRC6A	27327	hgsc.bcm.edu	37	16	24804956	24804956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	43.0	14.0	53.0	0.0	0.325581	0	.	.	none	.	TNRC6A	171	.	NM_014494	exon7	c.C3338A	p.A1113E	CACAAGCATTAAG	.	PASS	Atlas-SNP
CX3CL1	6376	hgsc.bcm.edu	37	16	57416809	57416809	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	39.0	11.0	48.0	0.0	0.282051	0	.	.	none	.	CX3CL1	27	.	NM_002996	exon3	c.C1059G	p.F353L	CCTCTTCTGCCTG	.	PASS	Atlas-SNP
PTPRR	5801	hgsc.bcm.edu	37	12	71092083	71092083	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	84.0	25.0	81.0	0.0	0.297619	0	.	.	none	PTPRR,NS,carcinoma,0,1	PTPRR	109	1	NM_002849	exon8	c.G1241A	p.R414H	CCATGACGCGGAA	.	PASS	Atlas-SNP
ZSCAN32	54925	hgsc.bcm.edu	37	16	3433530	3433530	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	124.0	22.0	158.0	0.0	0.177419	0	.	.	none	.	.	.	.	NM_017810	exon6	c.T780C	p.S260S	CTCCTCACTCTCC	.	PASS	Atlas-SNP
PINK1	65018	hgsc.bcm.edu	37	1	20975644	20975644	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	148.0	40.0	145.0	0.0	0.27027	0	.	.	none	.	PINK1	37	.	NM_032409	exon7	c.C1408T	p.Q470X	GAGGCTCAGCTAC	.	PASS	Atlas-SNP
KNTC1	9735	hgsc.bcm.edu	37	12	123107092	123107092	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	192.0	58.0	187.0	0.0	0.302083	0	.	.	none	.	KNTC1	182	.	NM_014708	exon62	c.G6453A	p.K2151K	GTTGAAGATGCAT	.	PASS	Atlas-SNP
SLITRK5	26050	hgsc.bcm.edu	37	13	88328058	88328058	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	148.0	29.0	149.0	0.0	0.195946	0	.	.	none	.	SLITRK5	192	.	NM_015567	exon2	c.A415C	p.N139H	AACAATAATAAAC	.	PASS	Atlas-SNP
CXCR7	57007	hgsc.bcm.edu	37	2	237489798	237489798	+	Silent	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	115.0	24.0	139.0	0.0	0.208696	0	.	.	none	.	CXCR7	72	.	NM_020311	exon2	c.C690A	p.V230V	CGCTGTCTTCTAC	.	PASS	Atlas-SNP
REEP4	80346	hgsc.bcm.edu	37	8	21996529	21996529	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	39.0	20.0	78.0	0.0	0.512821	0	.	.	none	.	REEP4	13	.	NM_025232	exon6	c.G463A	p.D155N	GCAGGTCCTGCAT	.	PASS	Atlas-SNP
GRID1	2894	hgsc.bcm.edu	37	10	87898678	87898678	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	70.0	14.0	115.0	0.0	0.2	0	.	.	none	.	GRID1	204	.	NM_017551	exon4	c.C624T	p.L208L	GGTGAAGAGGCTG	.	PASS	Atlas-SNP
ZFP28	140612	hgsc.bcm.edu	37	19	57065996	57065996	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	137.0	36.0	175.0	0.0	0.262774	0	.	.	none	.	ZFP28	99	.	NM_020828	exon8	c.G1842A	p.E614E	TGGGGAGAAGCCT	.	PASS	Atlas-SNP
SLC25A47	283600	hgsc.bcm.edu	37	14	100795800	100795800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	56.0	12.0	75.0	0.0	0.214286	0	.	.	none	.	SLC25A47	36	.	NM_207117	exon6	c.G745A	p.G249R	GCAGACGGGCAGG	.	PASS	Atlas-SNP
FAF2	23197	hgsc.bcm.edu	37	5	175913491	175913491	+	Splice_Site	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	108.0	45.0	114.0	0.0	0.416667	0	.	.	none	.	FAF2	38	.	NM_014613	exon3	c.267+1G>A	.	CCAAGGGCAAGTT	.	PASS	Atlas-SNP
P2RY8	286530	hgsc.bcm.edu	37	X	1584688	1584688	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	54.0	26.0	98.0	0.0	0.481481	0	.	.	none	.	P2RY8	53	.	NM_178129	exon2	c.T764C	p.F255S	AGCACGAAGTTGT	.	PASS	Atlas-SNP
LAMA5	3911	hgsc.bcm.edu	37	20	60909029	60909029	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	97.0	35.0	122.0	0.0	0.360825	0	.	.	none	.	LAMA5	268	.	NM_005560	exon23	c.A2806G	p.N936D	CCCGGTTGACGTA	.	PASS	Atlas-SNP
ZNF160	90338	hgsc.bcm.edu	37	19	53573446	53573446	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	181.0	28.0	221.0	0.0	0.154696	0	.	.	none	.	ZNF160	75	.	NM_001102603	exon7	c.A341G	p.H114R	ACTGTGTGGAATA	.	PASS	Atlas-SNP
ROBO3	64221	hgsc.bcm.edu	37	11	124748633	124748633	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	24.0	9.0	37.0	0.0	0.375	0	.	.	none	.	ROBO3	199	.	NM_022370	exon23	c.C3474T	p.P1158P	TACACCCTCACCT	.	PASS	Atlas-SNP
LMAN1L	79748	hgsc.bcm.edu	37	15	75108518	75108518	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	31.0	15.0	44.0	0.0	0.483871	0	.	.	none	.	LMAN1L	43	.	NM_021819	exon2	c.G196A	p.E66K	CTGGAGGAAGTGC	.	PASS	Atlas-SNP
MLL4	8085	hgsc.bcm.edu	37	19	36218067	36218067	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	65.0	17.0	106.0	0.0	0.261538	0	.	.	none	.	MLL4	229	.	NM_014727	exon15	c.C4014T	p.C1338C	CTACTGCCCGATC	.	PASS	Atlas-SNP
UBB	7314	hgsc.bcm.edu	37	17	16285294	16285294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	93.0	20.0	111.0	0.0	0.215054	0	.	.	none	.	UBB	30	.	NM_018955	exon2	c.A73T	p.N25Y	ATCGAAAATGTGA	.	PASS	Atlas-SNP
NUP62	23636	hgsc.bcm.edu	37	19	50412090	50412090	+	Silent	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	44.0	16.0	78.0	0.0	0.363636	0	.	.	none	.	NUP62	50	.	NM_153719	exon3	c.C975T	p.S325S	GGCGGAGCTGGCA	.	PASS	Atlas-SNP
HSP90AB1	3326	hgsc.bcm.edu	37	6	44218144	44218144	+	Silent	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	119.0	16.0	98.0	0.0	0.134454	0	.	.	none	.	HSP90AB1	83	.	NM_007355	exon6	c.A765C	p.S255S	GGGTTCAGATGAG	.	PASS	Atlas-SNP
TMEM245	23731	hgsc.bcm.edu	37	9	111849490	111849490	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	129.0	45.0	94.0	0.0	0.348837	0	.	.	none	.	.	.	.	NM_032012	exon6	c.T1283G	p.V428G	AGCCCGACAATGG	.	PASS	Atlas-SNP
FREM1	158326	hgsc.bcm.edu	37	9	14775791	14775791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	261.0	54.0	157.0	0.0	0.206897	0	.	.	none	.	FREM1	261	.	NM_144966	exon26	c.T4853G	p.I1618S	GCCTGAATGGTGA	.	PASS	Atlas-SNP
ITPKB	3707	hgsc.bcm.edu	37	1	226924346	226924346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	67.0	25.0	78.0	0.0	0.373134	0	.	.	none	.	ITPKB	158	.	NM_002221	exon2	c.G814A	p.A272T	CCATAGCTGTGGG	.	PASS	Atlas-SNP
STAP2	55620	hgsc.bcm.edu	37	19	4333777	4333777	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	63.0	15.0	74.0	0.0	0.238095	0	.	.	none	.	STAP2	38	.	NM_001013841	exon3	c.C211G	p.L71V	CTGTGAGTTTCTC	.	PASS	Atlas-SNP
FAM9A	171482	hgsc.bcm.edu	37	X	8763298	8763298	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	75.0	30.0	84.0	0.0	0.4	0	.	.	none	.	FAM9A	57	.	NM_174951	exon7	c.G652C	p.V218L	CTACTACTATTAC	.	PASS	Atlas-SNP
GEMIN4	50628	hgsc.bcm.edu	37	17	648463	648463	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	32.0	11.0	62.0	0.0	0.34375	0	.	.	none	.	GEMIN4	116	.	NM_015721	exon2	c.C2820G	p.V940V	GAGTTTGACCACG	.	PASS	Atlas-SNP
LRRC23	10233	hgsc.bcm.edu	37	12	7016547	7016547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	85.0	28.0	101.0	0.0	0.329412	0	.	.	none	LRRC23,colon,carcinoma,0,2	LRRC23	46	2	NM_001135217	exon5	c.C559T	p.R187W	GAGCTTCGGGGGA	.	PASS	Atlas-SNP
TLN1	7094	hgsc.bcm.edu	37	9	35704399	35704399	+	Missense_Mutation	SNP	C	C	T	rs149639715	bycluster;byfrequency;by1000genomes	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	148.0	15.0	82.0	0.0	0.101351	0	C|0.998;T|0.002	0.002	strong	.	TLN1	185	.	NM_006289	exon45	c.G5977A	p.D1993N	TGGTGTCGAGGTC	.	PASS	Atlas-SNP
CDH2	1000	hgsc.bcm.edu	37	18	25563042	25563042	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	177.0	20.0	172.0	0.0	0.112994	0	.	.	none	.	CDH2	194	.	NM_001792	exon14	c.G2215T	p.V739L	TCAGCACAAGGAC	.	PASS	Atlas-SNP
UMODL1	89766	hgsc.bcm.edu	37	21	43547122	43547122	+	Silent	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	106.0	33.0	97.0	0.0	0.311321	0	.	.	none	.	UMODL1	186	.	NM_173568	exon18	c.C3684T	p.Y1228Y	GGTTTACACCATC	.	PASS	Atlas-SNP
DCSTAMP	81501	hgsc.bcm.edu	37	8	105367391	105367391	+	Missense_Mutation	SNP	G	G	A	rs139698540		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	109.0	10.0	94.0	0.0	0.0917431	0	G|1.000;A|0.000	0.000	weak	.	.	.	.	NM_030788	exon3	c.G1316A	p.R439Q	AAAGACGGCTGAG	.	PASS	Atlas-SNP
MUSK	4593	hgsc.bcm.edu	37	9	113538189	113538189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	326.0	92.0	244.0	0.0	0.282209	0	.	.	none	.	MUSK	112	.	NM_005592	exon9	c.A1306C	p.K436Q	TGCAGCAAGCTTC	.	PASS	Atlas-SNP
AP3B1	8546	hgsc.bcm.edu	37	5	77412011	77412011	+	Silent	SNP	A	A	T	rs42360	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	147.0	15.0	117.0	0.0	0.102041	0	A|0.776;C|0.001	.	alt	AP3B1,NS,carcinoma,0,1	AP3B1	94	1	NM_003664	exon18	c.T2016A	p.A672A	CTTCTTAGCAGAA	.	PASS	Atlas-SNP
ILK	3611	hgsc.bcm.edu	37	11	6629314	6629314	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	81.0	12.0	116.0	0.0	0.148148	0	.	.	none	ILK_ENST00000299421,NS,malignant_melanoma,0,1	ILK	41	1	NM_001014794	exon3	c.G128A	p.R43Q	CCTGCCGAGAGGG	.	PASS	Atlas-SNP
EXOC4	60412	hgsc.bcm.edu	37	7	132959870	132959870	+	Missense_Mutation	SNP	C	C	T	rs201300506	bycluster	TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	72.0	16.0	103.0	0.0	0.222222	0	C|0.999;T|0.001	0.001	weak	EXOC4,NS,carcinoma,-1,2	EXOC4	118	2	NM_021807	exon2	c.C220T	p.R74C	GCCATTCGCACAT	.	PASS	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91518117	91518117	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	583.0	183.0	873.0	0.0	0.313894	0	.	.	none	.	PCDH11X	714	.	NM_001168361	exon4	c.A3119T	p.K1040I	AGCGGAAATCTGA	.	PASS	Atlas-SNP
PCDH11X	27328	hgsc.bcm.edu	37	X	91134203	91134203	+	Silent	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	175.0	27.0	251.0	0.0	0.154286	0	.	.	none	.	PCDH11X	714	.	NM_001168363	exon2	c.C2964A	p.P988P	AGATCCCTACAGC	.	PASS	Atlas-SNP
RIMS1	22999	hgsc.bcm.edu	37	6	72596832	72596832	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	48.0	22.0	116.0	0.0	0.458333	0	.	.	none	.	RIMS1	278	.	NM_014989	exon1	c.A106G	p.I36V	AACATTATCATGG	.	PASS	Atlas-SNP
CAMK2G	818	hgsc.bcm.edu	37	10	75608359	75608359	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	85.0	22.0	71.0	0.0	0.258824	0	.	.	none	.	CAMK2G	79	.	NM_172170	exon8	c.G526A	p.G176S	GGGTGCCAGCAAA	.	PASS	Atlas-SNP
NFATC2IP	84901	hgsc.bcm.edu	37	16	28962525	28962525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	182.0	25.0	175.0	0.0	0.137363	0	.	.	none	.	NFATC2IP	24	.	NM_032815	exon1	c.C193T	p.R65C	ACCGCTCGCGGTG	.	PASS	Atlas-SNP
LRRN1	57633	hgsc.bcm.edu	37	3	3888234	3888234	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	128.0	26.0	180.0	0.0	0.203125	0	.	.	none	.	LRRN1	82	.	NM_020873	exon2	c.G1909C	p.G637R	GTAATGGGGTCTA	.	PASS	Atlas-SNP
RPL10L	140801	hgsc.bcm.edu	37	14	47120688	47120688	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	68.0	20.0	113.0	0.0	0.294118	0	.	.	none	.	RPL10L	64	.	NM_080746	exon1	c.C252G	p.G84G	GTGAAAGCCATCT	.	PASS	Atlas-SNP
ZCCHC8	55596	hgsc.bcm.edu	37	12	122962423	122962423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	119.0	31.0	130.0	0.0	0.260504	0	.	.	none	.	ZCCHC8	56	.	NM_017612	exon13	c.C1310T	p.S437L	CCCGCTGAGTTGC	.	PASS	Atlas-SNP
BAI3	577	hgsc.bcm.edu	37	6	70098685	70098685	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	81.0	35.0	87.0	0.0	0.432099	0	.	.	none	BAI3,colon,carcinoma,0,1	BAI3	451	1	NM_001704	exon32	c.G4471A	p.E1491K	GACACAGAGGCAA	.	PASS	Atlas-SNP
CACNA2D2	9254	hgsc.bcm.edu	37	3	50405270	50405270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	134.0	21.0	132.0	1.0	0.156716	0.00757576	.	.	none	CACNA2D2,colon,carcinoma,-1,2	CACNA2D2	82	2	NM_001174051	exon26	c.G2228A	p.R743H	CACACACGCTCTA	.	scavenged	Atlas-SNP
EVC	2121	hgsc.bcm.edu	37	4	5811337	5811337	+	Silent	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	53.0	16.0	60.0	0.0	0.301887	0	.	.	none	EVC,right_lower_lobe,carcinoma,0,1	EVC	90	1	NM_153717	exon19	c.A2781G	p.L927L	GCTGCTAGGTGAG	.	PASS	Atlas-SNP
MLL3	58508	hgsc.bcm.edu	37	7	151902302	151902302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	234.0	74.0	306.0	0.0	0.316239	0	.	.	none	.	MLL3	1564	.	NM_170606	exon25	c.G3850A	p.G1284R	TAAATCCACCAAT	.	PASS	Atlas-SNP
ATR	545	hgsc.bcm.edu	37	3	142281284	142281284	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	177.0	61.0	162.0	0.0	0.344633	0	.	.	none	.	ATR	285	.	NM_001184	exon4	c.G960T	p.M320I	CAGCAGCATATTT	.	PASS	Atlas-SNP
PHF12	57649	hgsc.bcm.edu	37	17	27248804	27248804	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	235.0	74.0	263.0	0.0	0.314894	0	.	.	none	.	PHF12	69	.	NM_020889	exon5	c.G738C	p.K246N	TTCCTCCTTTCTT	.	PASS	Atlas-SNP
COL14A1	7373	hgsc.bcm.edu	37	8	121219273	121219273	+	Silent	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	183.0	65.0	111.0	0.0	0.355191	0	.	.	none	.	COL14A1	292	.	NM_021110	exon10	c.A1131T	p.P377P	TGCCCCAGGAAAT	.	PASS	Atlas-SNP
TTF1	7270	hgsc.bcm.edu	37	9	135261984	135261984	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	408.0	86.0	375.0	0.0	0.210784	0	.	.	none	.	TTF1	82	.	NM_007344	exon9	c.T2337A	p.D779E	ATTAGTATCTTCC	.	PASS	Atlas-SNP
GPR183	1880	hgsc.bcm.edu	37	13	99948277	99948277	+	Silent	SNP	G	G	C	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	173.0	41.0	218.0	1.0	0.236994	0.00458716	.	.	none	GPR183,NS,carcinoma,-2,1	GPR183	38	1	NM_004951	exon2	c.C123G	p.V41V	GATGAAGACGAGG	.	scavenged	Atlas-SNP
PGBD4	161779	hgsc.bcm.edu	37	15	34396402	34396402	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-GS-A9TW-01A-11D-A382-10	TCGA-GS-A9TW-10A-01D-A385-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0c78bd1a-f7eb-4456-8210-f115aa079df5	e592ed1e-4fa3-459e-8256-01b5e2dc09ce	46.0	14.0	41.0	0.0	0.304348	0	.	.	none	.	PGBD4	58	.	NM_152595	exon1	c.A1670G	p.K557R	TCCGGAAAGAAAC	.	PASS	Atlas-SNP
