Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CHD5	26038	ucsc.edu	37	1	6211114	6211114	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CHD5-719	NM_015557	exon7	c.G972T	p.K324N	CCTCCTCTTGCTC	.	40	4	64	0	.	0	0	0	0	0
CLCA2	9635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	86890015	86890015	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CLCA2-155	NM_006536	exon1	c.C85T	p.L29L	CCATTCCTGGGAG	.	55	35	47	0	.	0	0	0	0	0
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	154574741	154574741	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ADAR-157	NM_001111	exon2	c.T377C	p.L126P	GAGGAAAGGCAAT	.	41	24	94	0	.	24	5	19	0	0
THNSL1	79896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	25312238	25312238	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	THNSL1-91	NM_024838	exon3	c.C86T	p.A29V	AACATGCACAGCG	.	118	48	80	0	.	2	1	1	0	0
OR4A5	81318	hgsc.bcm.edu	37	11	51411515	51411515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	OR4A5-92	NM_001005272	exon1	c.C881T	p.A294V	TCTATAGCATTTC	.	38	16	5	1	.	0	0	0	0	0
MYO7A	4647	broad.mit.edu	37	11	76888670	76888670	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	MYO7A-138	NM_001127179	exon19	c.A2263T	p.I755F	AAAGTCATCCGGG	.	11	3	30	0	.	2	1	1	0	0
CCDC84	338657	broad.mit.edu;ucsc.edu	37	11	118869166	118869166	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CCDC84-91	NM_198489	exon2	c.C147T	p.R49R	CATCCGCGCCGCT	.	22	5	30	0	.	7	2	5	0	0
TULP3	7289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	3048537	3048537	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TULP3-226	NM_003324	exon11	c.A1256C	p.N419T	ATTACAACTACCC	.	165	48	170	0	.	61	32	29	0	0
ACAD10	80724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	112183962	112183962	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ACAD10-92	NM_001136538	exon15	c.T2223C	p.A741A	CAAAGCTGAAGGA	.	101	34	132	0	.	27	8	19	0	0
GAS6	2621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	114523928	114523928	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GAS6-650	NM_000820	exon15	c.A1946G	p.N649S	CTCCGGTTGACCT	.	52	23	69	0	.	39	22	17	0	0
RBM23	55147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23374814	23374814	+	Splice_Site	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RBM23-91	NM_018107	exon6	c.407+1G>C	.	AACCCACCTGACT	.	40	26	99	0	.	2	0	2	0	0
MYEF2	50804	ucsc.edu	37	15	48446066	48446066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	MYEF2-523	NM_016132	exon10	c.G1010A	p.G337E	CCAAGTCCCATCC	.	35	4	20	0	.	11	11	0	0	0
SMG1	23049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	18840922	18840922	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SMG1-1160	NM_015092	exon54	c.C9289A	p.L3097I	TGGGTAGCCCTAT	.	70	40	38	0	.	32	11	21	0	0
FTSJD1	55783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71317552	71317552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	FTSJD1-91	NM_018348	exon3	c.G2272A	p.E758K	CTCTCTCTCTTTG	.	67	17	31	0	.	23	16	7	0	0
PLCG2	5336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81990321	81990321	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PLCG2-892	NM_002661	exon32	c.T3592G	p.S1198A	CTTTACTCCTCCT	.	77	28	67	0	.	6	6	0	0	0
ZNHIT3	9326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34849806	34849806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNHIT3-90	NM_004773	exon4	c.A242G	p.D81G	ATAGTGATGAGGA	.	162	65	128	0	.	59	39	20	0	0
DLX3	1747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48072053	48072053	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	DLX3-90	NM_005220	exon1	c.C310G	p.P104A	GGGCTGGCAGCGG	.	51	25	69	0	.	0	0	0	0	0
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	80885835	80885835	+	Silent	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TBCD-22	NM_005993	exon30	c.G2664C	p.R888R	GGCTCGGAGCCAG	.	97	33	108	0	.	79	48	31	0	0
NPC1	4864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	21128030	21128030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NPC1-92	NM_000271	exon11	c.C1697A	p.P566H	TTGACAGGGAAGG	.	184	72	207	0	.	9	2	7	0	0
RNF165	494470	hgsc.bcm.edu;bcgsc.ca	37	18	44013357	44013357	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RNF165-90	NM_152470	exon2	c.A266G	p.Q89R	CCCTGCAGTTCCA	.	58	16	58	0	.	0	0	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1005500	1005500	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GRIN3B-90	NM_138690	exon3	c.T2000C	p.V667A	CTGCCGTCATGGT	.	37	2	57	0	.	62	62	0	0	0
GPX4	2879	ucsc.edu;bcgsc.ca	37	19	1106396	1106396	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GPX4-90	.	.	.	.	TCTCCACAGTTCC	.	52	7	116	0	.	106	7	99	0	0
LDLR	3949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	11216253	11216253	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	LDLR-94	NM_001195798	exon4	c.A671C	p.D224A	GCAAGGACAAATC	.	66	28	74	0	.	0	0	0	0	0
AP1M1	8907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	16339616	16339616	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	AP1M1-156	NM_001130524	exon10	c.C960G	p.N320K	AGCCAACAACGTG	.	56	19	78	0	.	135	76	59	0	0
ZNF99	7652	broad.mit.edu	37	19	22941129	22941129	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNF99-24	NM_001080409	exon4	c.A1582C	p.K528Q	TTATCTTATGTTT	.	77	3	48	1	.	0	0	0	0	0
ZNF99	7652	hgsc.bcm.edu;broad.mit.edu	37	19	22941154	22941154	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNF99-24	NM_001080409	exon4	c.G1557C	p.K519N	GAAATGCTTAAAA	.	63	4	44	1	.	0	0	0	0	0
IRF2BP1	26145	ucsc.edu	37	19	46388582	46388582	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	IRF2BP1-90	NM_015649	exon1	c.C451T	p.R151X	CCCTTCGCGCCCC	.	23	4	36	0	.	15	15	0	0	0
NOVA2	4858	broad.mit.edu;bcgsc.ca	37	19	46443735	46443735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NOVA2-226	NM_002516	exon4	c.T865C	p.Y289H	AGCCGTAACTTGC	.	24	4	21	0	.	0	0	0	0	0
TBC1D8	11138	hgsc.bcm.edu	37	2	101706726	101706726	+	Silent	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TBC1D8-25	NM_001102426	exon2	c.C228G	p.P76P	TGCTATGGGAGAA	.	44	3	64	0	.	1	1	0	0	0
GORASP2	26003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	171806790	171806790	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GORASP2-135	NM_015530	exon4	c.T425C	p.V142A	ATACAGTCATGAA	.	76	32	29	0	.	0	0	0	0	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	179411556	179411556	+	Silent	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TTN-636	NM_001267550	exon341	c.T94599C	p.D31533D	GCCTCCATCATAC	.	44	22	17	0	.	0	0	0	0	0
SF3B1	23451	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	2	198269882	198269882	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SF3B1-140	NM_012433	exon11	c.C1457G	p.T486R	CTAAGTGTTGATT	.	42	4	29	0	.	108	108	0	0	0
SATB2	23314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	200193570	200193570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SATB2-91	NM_015265	exon9	c.G1237T	p.V413L	GGTTTACTAGAAG	.	46	11	16	0	.	16	8	8	0	0
NOP58	51602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	203155146	203155146	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NOP58-90	NM_015934	exon7	c.T600C	p.D200D	TTCAGATAATTTA	.	76	31	58	0	.	24	10	14	0	0
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3102965	3102965	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	UBOX5-227	NM_014948	exon3	c.C320T	p.P107L	ACAGATGGCTCAG	.	73	23	116	0	.	8	6	2	0	0
NFATC2	4773	ucsc.edu	37	20	50049132	50049132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NFATC2-92	NM_012340	exon9	c.C2194T	p.R732C	CCGTGCGGAACTG	.	35	4	57	0	.	2	2	0	0	0
BCAS1	8537	bcgsc.ca	37	20	52645037	52645037	+	Missense_Mutation	SNP	T	T	C	rs143209009		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	BCAS1-652	NM_003657	exon4	c.A617G	p.K206R	GGCACCTTTTCCT	.	231	6	239	0	T|1.000;C|0.000	0	0	0	0	0
TAF4	6874	hgsc.bcm.edu	37	20	60585136	60585136	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TAF4-93	NM_003185	exon4	c.T1727C	p.V576A	CCTGGTACCGTGC	.	49	3	82	0	.	12	11	0	1	0
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	37418117	37418117	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SETD4-154	NM_001007259	exon6	c.A489G	p.R163R	GTGGGCTCTCTGC	.	204	90	200	0	.	24	14	10	0	0
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44841223	44841223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SIK1-346	NM_173354	exon6	c.A524G	p.K175R	CCTGACTTGTAGA	.	119	46	168	0	.	4	4	0	0	0
PHF21B	112885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	45312440	45312440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PHF21B-93	NM_138415	exon4	c.C284A	p.P95H	GTTGGGGGCTGCT	.	85	30	134	0	.	0	0	0	0	0
GALNT15	117248	hgsc.bcm.edu	37	3	16217029	16217029	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_054110	exon1	c.G371C	p.R124T	AGCCAAGGAGGCA	.	36	2	42	0	.	4	4	0	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52588791	52588791	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PBRM1-575	NM_018313	exon27	c.C4237A	p.P1413T	GGTGGGGTGGAGG	.	39	19	47	0	.	6	2	4	0	0
IL17RB	55540	hgsc.bcm.edu	37	3	53891719	53891719	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	IL17RB-229	NM_018725	exon8	c.747+2T>C	.	TGCAGGTAAAGTT	.	57	3	64	0	.	215	215	0	0	0
ADCY5	111	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	123010068	123010068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ADCY5-94	NM_183357	exon18	c.G3219A	p.M1073I	GGCGAACATGACC	.	74	24	102	0	.	0	0	0	0	0
CLDN18	51208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137742626	137742626	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CLDN18-92	NM_016369	exon2	c.A347T	p.N116I	AAGCCAACATGAC	.	68	22	89	0	.	0	0	0	0	0
TMEM41A	90407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185209397	185209397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TMEM41A-90	NM_080652	exon5	c.A723T	p.K241N	ACTAAATTTTTTA	.	95	41	75	0	.	19	11	8	0	0
ZNF718	255403	hgsc.bcm.edu	37	4	154974	154974	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_001039127	exon4	c.G499C	p.G167R	TATACTGGAGATA	.	11	2	5	0	.	3	3	0	0	0
NOP14	8602	ucsc.edu	37	4	2945921	2945921	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NOP14-91	NM_003703	exon13	c.G1770T	p.K590N	CAGGCCCTTCACC	.	46	5	79	0	.	8	8	0	0	0
ATP10D	57205	broad.mit.edu	37	4	47538506	47538506	+	Silent	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ATP10D-93	NM_020453	exon8	c.C1068A	p.P356P	TGTTCCCGAGCCT	.	284	9	101	0	.	17	17	0	0	0
SLC10A6	345274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	87749228	87749228	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SLC10A6-22	NM_197965	exon4	c.C679G	p.L227V	TGGTCAGAAGGGT	.	45	16	55	0	.	0	0	0	0	0
CAMK2D	817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	114434488	114434488	+	Silent	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CAMK2D-334	NM_172128	exon12	c.C942T	p.F314F	ACCTGAGAAATTC	.	113	42	84	0	.	2	1	1	0	0
TLR3	7098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187004092	187004092	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TLR3-524	NM_003265	exon4	c.A1252C	p.K418Q	AAGAATAAAATCT	.	79	26	62	0	.	21	11	10	0	0
ZFR	51663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	32403408	32403408	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZFR-90	NM_016107	exon8	c.C1319T	p.S440L	GGCTTTGAAGCAG	.	160	70	102	0	.	41	21	20	0	0
PIK3R1	5295	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	67576767	67576767	+	Silent	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PIK3R1-4332	NM_181523	exon7	c.T849G	p.T283T	TAATACTGAAAAC	.	61	18	41	0	.	5	4	1	0	0
PAPD4	167153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78975410	78975410	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PAPD4-69	NM_173797	exon14	c.G1217C	p.S406T	GGAATAGTCAAAT	.	73	33	57	0	.	0	0	0	0	0
SLIT3	6586	hgsc.bcm.edu	37	5	168112858	168112858	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SLIT3-95	NM_001271946	exon31	c.A3410G	p.N1137S	GCCCCGTTCTGGC	.	28	2	28	1	.	5	5	0	0	0
NELFE	7936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31922209	31922209	+	Silent	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_002904	exon8	c.A753G	p.S251S	AGGGAATGAATCC	.	88	30	109	0	.	1	1	0	0	0
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	66204808	66204808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	EYS-660	NM_001142801	exon4	c.A496C	p.N166H	TCACATTTAGTCG	.	97	32	54	0	.	0	0	0	0	0
SLC22A16	85413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	110746234	110746234	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SLC22A16-91	NM_033125	exon8	c.G1576T	p.E526X	GGGTTTCTGGAAG	.	135	48	132	1	.	0	0	0	0	0
ETV1	2115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	13971323	13971323	+	Silent	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ETV1-659	NM_004956	exon9	c.G606C	p.T202T	TGGCATCGTCGGC	.	45	17	46	0	.	2	1	1	0	0
SUN3	256979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48035693	48035693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SUN3-514	NM_152782	exon8	c.G628A	p.A210T	ATTTTGCTTTATT	.	126	40	115	0	.	0	0	0	0	0
PEX1	5189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92151473	92151473	+	Silent	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PEX1-91	NM_000466	exon2	c.T216C	p.N72N	AGCCACATTTTCA	.	130	55	90	0	.	9	3	6	0	0
TUSC3	7991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	15508312	15508312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TUSC3-516	NM_178234	exon3	c.G415A	p.V139I	ACAGACGTTTTTC	.	222	96	163	0	.	0	0	0	0	0
PSD3	23362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18430149	18430149	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PSD3-93	NM_015310	exon14	c.A2673T	p.K891N	ATTGATTTTGTTT	.	225	73	115	0	.	3	2	1	0	0
TRIM35	23087	broad.mit.edu;bcgsc.ca	37	8	27168425	27168425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	TRIM35-226	NM_171982	exon1	c.C328A	p.L110I	AGAAGAGGCTGAG	.	24	9	42	0	.	9	5	4	0	0
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	28206721	28206721	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ZNF395-90	NM_018660	exon9	c.A1351G	p.S451G	GCTCGCTGAAGCT	.	70	22	110	0	.	53	36	17	0	0
DGAT1	8694	hgsc.bcm.edu	37	8	145542536	145542536	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_012079	exon4	c.A377C	p.K126T	GGATCCTTCAGGA	.	31	2	37	0	.	36	36	0	0	0
ARID3C	138715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	34622092	34622092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	ARID3C-91	NM_001017363	exon6	c.G1063A	p.G355R	GAGGCCCATCCAG	.	130	44	184	0	.	0	0	0	0	0
RUSC2	9853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35547391	35547391	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RUSC2-91	NM_014806	exon2	c.G873C	p.M291I	CAAGATGCATGGC	.	93	31	150	0	.	14	5	9	0	0
NANS	54187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	100840514	100840514	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NANS-91	NM_018946	exon4	c.A488G	p.D163G	CAATGGACACCAT	.	127	47	167	0	.	63	52	11	0	0
KLHL4	56062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	86773063	86773063	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	KLHL4-133	NM_019117	exon1	c.C167G	p.S56C	GCCACTCTCGGGA	.	31	26	16	0	.	1	0	1	0	0
NRK	203447	broad.mit.edu	37	X	105167297	105167297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	NRK-630	NM_198465	exon18	c.A2798G	p.D933G	ATGGTGATGATGA	.	7	2	10	0	.	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182120	120182120	+	Silent	SNP	C	C	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	GLUD2-131	NM_012084	exon1	c.C582T	p.T194T	CTATACCGAAAAT	.	81	1	72	0	.	5	5	0	0	0
CDR1	1038	hgsc.bcm.edu	37	X	139866440	139866440	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CDR1-130	NM_004065	exon1	c.T92C	p.V31A	AAAGGTACGTCTT	.	93	6	46	2	.	1	1	0	0	0
RNF165	494470	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	44013351	44013353	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	RNF165-90	NM_152470	exon2	c.260_262del	p.87_88del	.	.	49	15	51	0	.	0	0	0	0	0
SAMD4B	55095	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39868382	39868391	+	Frame_Shift_Del	DEL	TCCCACTGAT	TCCCACTGAT	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	TCCCACTGAT	TCCCACTGAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	SAMD4B-90	NM_018028	exon10	c.1362_1371del	p.454_457del	.	.	61	10	110	0	.	0	0	0	0	0
DALRD3	55152	broad.mit.edu	37	3	49055671	49055671	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	DALRD3-90	NM_001009996	exon2	c.246delC	p.P82fs	ACCCGCGGGGGTC	.	6	2	5	0	.	0	0	0	0	0
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	15989284	15989287	+	Frame_Shift_Del	DEL	ACCA	ACCA	-	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	ACCA	ACCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	PROM1-207	NM_006017	exon19	c.2129_2130del	p.710_710del	.	.	233	69	228	0	.	0	0	0	0	0
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	156715103	156715104	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	HDGF-226	NM_001126050	exon2	c.198_199insT	p.F66fs	.	.	21	13	42	0	.	0	0	0	0	0
MAST3	23031	broad.mit.edu;bcgsc.ca	37	19	18254602	18254603	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	MAST3-502	NM_015016	exon21	c.2282_2283insCT	p.S761fs	GATCCTCCTGTCA	.	23	9	37	0	.	0	0	0	0	0
HAO1	54363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	7886831	7886832	+	In_Frame_Ins	INS	-	-	TTT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	HAO1-93	NM_017545	exon4	c.691_692insAAA	p.L231delinsKL	.	.	183	51	120	0	.	0	0	0	0	0
BPIFB2	80341	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	31604905	31604906	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_025227	exon7	c.574_575insT	p.I192fs	.	.	111	35	143	0	.	0	0	0	0	0
DOLK	22845	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131708944	131708945	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	DOLK-90	NM_014908	exon1	c.639_640insC	p.L213fs	.	.	105	36	146	0	.	0	0	0	0	0
GAGE2A	729447	broad.mit.edu	37	X	49208295	49208296	+	In_Frame_Ins	INS	-	-	TAT	rs33925578		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	.	NM_001127212	exon2	c.24_25insTAT	p.T8delinsTY	ATCGACCTATCGG	.	542	2	601	0	.	0	0	0	0	0
COL18A1	80781	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46911142	46911143	+	Missense_Mutation	DNP	GA	GA	AT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	COL18A1		exon21	c.A2612T	p.D1106I	AGGGAGATCCAGG	.	51.0	18.0	65.0	0.0	.	0	0	0	0	0
CCT7	10574	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73471795	73471796	+	Nonsense_Mutation	DNP	GC	GC	TT	novel		TCGA-A4-7583-01A-11D-2136-08	TCGA-A4-7583-10A-01D-2136-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b40c1178-c913-4b63-8863-f631473fffde	0a94c473-a646-42ca-9537-145517302063	.	CCT7-90	NM_006429	exon6	c.C571T	p.Q191*	TTGCTGCAGCTTA	.	35	11	40	0	.	0	0	0	0	0
