Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
TMEM200B	399474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29447533	29447533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TMEM200B-68	NM_001171868	exon2	c.C808T	p.L270F	CCCCAAGGAGGAG	.	34	14	72	0	.	11	4	7	0	0
ABCA4	24	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	94548962	94548962	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ABCA4-162	NM_000350	exon7	c.C804T	p.I268I	CAGATTGATACCT	.	257	119	393	1	.	0	0	0	0	0
PTPN22	26191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	114402065	114402065	+	Silent	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PTPN22-227	NM_001193431	exon2	c.T105C	p.S35S	CTTGGTAGATTGC	.	97	46	151	0	.	0	0	0	0	0
RPS6KC1	26750	hgsc.bcm.edu	37	1	213244385	213244385	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	RPS6KC1-417	NM_012424	exon2	c.141+2T>C	.	AGGAGGTAACATT	.	11	2	25	0	.	0	0	0	0	0
ADCK3	56997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	227174187	227174187	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ADCK3-361	NM_020247	exon15	c.A1693G	p.I565V	ATCCTCATCCTGG	.	97	45	134	0	.	30	12	18	0	0
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	233134020	233134020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCNXL2-91	NM_014801	exon32	c.C5768T	p.S1923F	TCACAGGATGACA	.	18	9	28	0	.	10	8	2	0	0
PCNXL2	80003	hgsc.bcm.edu	37	1	233225880	233225880	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCNXL2-91	NM_014801	exon23	c.A4003G	p.S1335G	ATGGGCTCAATGG	.	51	3	75	0	.	1	1	0	0	0
ZMYND11	10771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	287963	287963	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZMYND11-90	NM_006624	exon10	c.A834G	p.I278M	CCAGATACCTAAT	.	46	17	76	0	.	1	0	1	0	0
PLXDC2	84898	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	20357165	20357165	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PLXDC2-93	NM_032812	exon4	c.G538A	p.G180R	GCAACCGGGGGTA	.	29	4	56	0	.	0	0	0	0	0
PPRC1	23082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	103900396	103900396	+	Missense_Mutation	SNP	G	G	A	rs17847386		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PPRC1-227	NM_015062	exon5	c.G2131A	p.V711M	CTCCTCGTGGAGT	.	64	6	101	0	G|0.999;T|0.001	3	3	0	0	0
COPB1	1315	hgsc.bcm.edu	37	11	14510132	14510132	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	COPB1-91	NM_001144062	exon7	c.607-2A>G	.	CGATCCTAAAAAA	.	20	2	23	0	.	0	0	0	0	0
SLC5A12	159963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	26743059	26743059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC5A12-92	NM_178498	exon1	c.T203C	p.L68P	GTCCCCAGGACCG	.	50	22	57	1	.	2	0	2	0	0
SLC43A3	29015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57177469	57177469	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC43A3-90	NM_017611	exon12	c.A1186C	p.I396L	GCAGGATGAAGGT	.	24	7	47	0	.	5	5	0	0	0
USP28	57646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	113705056	113705056	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	USP28-706	NM_020886	exon6	c.C536G	p.S179C	AAGAGAGACTGAA	.	34	18	47	0	.	0	0	0	0	0
SIDT2	51092	broad.mit.edu;bcgsc.ca	37	11	117063308	117063308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SIDT2-90	NM_001040455	exon21	c.G2000A	p.R667H	TCCGCCGCATCCT	.	75	5	114	0	.	9	9	0	0	0
DPAGT1	1798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118969112	118969112	+	Splice_Site	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DPAGT1-221	NM_001382	exon6	c.728+1G>A	.	TACTTACCAGTTG	.	101	50	175	0	.	2	0	2	0	0
TFCP2	7024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	51495806	51495806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TFCP2-91	NM_001173452	exon11	c.G1063A	p.A355T	AATCTGCCCCTGG	.	65	15	93	0	.	0	0	0	0	0
SLC39A5	283375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56626598	56626598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC39A5-92	NM_173596	exon5	c.A413G	p.D138G	GCCTGGACCTCCT	.	83	32	86	0	.	35	28	7	0	0
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57864354	57864354	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	GLI1-722	NM_005269	exon12	c.C1831T	p.R611W	CTGGATCGGATAG	.	57	21	77	0	.	0	0	0	0	0
CCDC41	51134	hgsc.bcm.edu	37	12	94769760	94769760	+	Missense_Mutation	SNP	G	G	A	rs79068264		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CCDC41-90	NM_016122	exon8	c.C835T	p.R279C	CCAAACGTTCTGC	.	20	7	12	2	G|0.998;A|0.002	0	0	0	0	0
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41894809	41894809	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NAA16-90	NM_001110798	exon4	c.A251T	p.H84L	GTTGGCATGTATA	.	58	4	72	0	.	0	0	0	0	0
MDGA2	161357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	47351354	47351354	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MDGA2-95	NM_001113498	exon11	c.C2309A	p.T770K	TTATATGTAATTA	.	29	7	25	0	.	0	0	0	0	0
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu	37	14	90528673	90528673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KCNK13-91	NM_022054	exon1	c.G124A	p.E42K	GCGCTGGAGCTGG	.	7	4	12	0	.	0	0	0	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102483550	102483550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DYNC1H1-98	NM_001376	exon39	c.G7974T	p.W2658C	AAAGTGGCTGGTG	.	79	5	129	0	.	6	6	0	0	0
TECPR2	9895	broad.mit.edu	37	14	102910132	102910132	+	Silent	SNP	G	G	A	rs202209194	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TECPR2-92	NM_001172631	exon12	c.G2901A	p.P967P	CTGTCCGGAAGGC	.	40	3	69	0	G|0.999;C|0.000	7	7	0	0	0
MAPKBP1	23005	ucsc.edu;bcgsc.ca	37	15	42117531	42117531	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MAPKBP1-589	NM_001128608	exon32	c.G4442A	p.S1481N	CAGGCAGCAGCCC	.	38	4	67	0	.	5	5	0	0	0
PKD1	5310	hgsc.bcm.edu;broad.mit.edu	37	16	2155927	2155927	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PKD1-91	NM_000296	exon20	c.G7802C	p.R2601P	GCCTGCCGCAGCA	.	52	7	74	1	.	13	11	2	0	0
PRSS21	10942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2868950	2868950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRSS21-92	NM_144957	exon4	c.G530T	p.G177V	GCTGGGGGTACAT	.	44	5	87	0	.	6	6	0	0	0
RRN3	54700	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	15159184	15159184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	RRN3-91	NM_018427	exon16	c.A1598G	p.N533S	TGGCGATTGTTCC	.	77	13	105	0	.	6	6	0	0	0
TANGO6	79613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	68909060	68909060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_024562	exon5	c.G998T	p.G333V	CAGCGGGAGCAGC	.	37	17	97	0	.	0	0	0	0	0
CLUH	23277	hgsc.bcm.edu;broad.mit.edu	37	17	2601454	2601454	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_015229	exon10	c.T1583C	p.L528P	ATCTTGAGGGGCC	.	9	7	9	0	.	27	5	22	0	0
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	11772554	11772554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	DNAH9-168	NM_001372	exon51	c.C10037T	p.S3346F	CCATCTCCCTTGC	.	91	28	118	0	.	0	0	0	0	0
KRTAP4-5	85289	hgsc.bcm.edu	37	17	39305911	39305911	+	Missense_Mutation	SNP	G	G	A	rs141058010		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KRTAP4-5-90	NM_033188	exon1	c.C109T	p.R37C	TGGGGCGGCAGCA	.	78	7	86	1	G|1.000;A|0.000	0	0	0	0	0
SLC16A5	9121	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	73096278	73096278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC16A5-90	NM_001271765	exon5	c.G520T	p.V174F	TTCCTTGTCTTCG	.	49	4	77	0	.	1	0	1	0	0
FAM108A1	81926	hgsc.bcm.edu	37	19	1881550	1881550	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	FAM108A1-90	NM_031213	exon2	c.C16T	p.L6L	CACTCAGCGACAG	.	21	6	36	1	.	3	3	0	0	0
MUC16	94025	broad.mit.edu	37	19	9088433	9088433	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MUC16-566	NM_024690	exon1	c.G3382A	p.A1128T	TCAGAGCTGAGCT	.	61	4	69	0	.	0	0	0	0	0
ZNF439	90594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	11978986	11978986	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF439-91	NM_152262	exon3	c.T1102C	p.S368P	GCCAAGTCATTTC	.	60	4	109	0	.	15	15	0	0	0
ZNF285	26974	hgsc.bcm.edu	37	19	44892065	44892065	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF285-94	NM_152354	exon4	c.T342G	p.I114M	AAGAGAAATGCCT	.	114	6	163	2	.	0	0	0	0	0
KPTN	11133	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	47987312	47987312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KPTN-91	NM_007059	exon1	c.G106A	p.G36S	GCCCGCCGGCGCC	.	43	17	64	0	.	0	0	0	0	0
LILRB4	11006	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55176288	55176288	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	LILRB4-93	NM_006847	exon5	c.G694A	p.V232I	AGGTCCGTCTCAA	.	31	5	32	0	.	0	0	0	0	0
NLRP13	126204	hgsc.bcm.edu	37	19	56416341	56416341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NLRP13-211	NM_176810	exon8	c.T2585C	p.L862P	TGAGTCAGGGCCG	.	43	3	87	0	.	0	0	0	0	0
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	61454345	61454345	+	Silent	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	USP34-579	NM_014709	exon62	c.T7452G	p.V2484V	CACTTCAACTTGA	.	11	6	23	0	.	0	0	0	0	0
GCFC2	6936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	75929399	75929399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_001201335	exon3	c.C545A	p.P182H	TCATCAGGCTCAC	.	135	59	202	0	.	5	2	3	0	0
IL1R1	3554	hgsc.bcm.edu	37	2	102792833	102792833	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	IL1R1-523	NM_000877	exon11	c.G1324C	p.E442Q	ATTAATGAAAACG	.	36	2	52	0	.	8	8	0	0	0
HNMT	3176	hgsc.bcm.edu;broad.mit.edu	37	2	138771361	138771361	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HNMT-91	NM_006895	exon6	c.C540A	p.D180E	CTGGGACAAGCTG	.	22	6	26	0	.	32	15	17	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166210795	166210795	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SCN2A-142	NM_001040143	exon16	c.A3013C	p.I1005L	CTCCAGATTGCTG	.	154	66	219	0	.	0	0	0	0	0
CERS6	253782	broad.mit.edu	37	2	169571584	169571584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_001256126	exon7	c.C683T	p.A228V	ATATGGCCCGAGT	.	76	4	101	1	.	0	0	0	0	0
PDE11A	50940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178936278	178936278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PDE11A-93	NM_016953	exon1	c.C887A	p.T296K	TTGACCGTTTCTC	.	100	52	169	0	.	0	0	0	0	0
MARS2	92935	hgsc.bcm.edu;broad.mit.edu	37	2	198571900	198571900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MARS2-92	NM_138395	exon1	c.C1771T	p.H591Y	AAAGCCCACCGGA	.	98	8	149	0	.	2	2	0	0	0
MKKS	8195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	10385928	10385928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MKKS-90	NM_170784	exon6	c.G1680T	p.L560F	AAGATCCAAAATC	.	32	9	44	0	.	21	18	3	0	0
LAMA5	3911	hgsc.bcm.edu	37	20	60891744	60891744	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	LAMA5-93	NM_005560	exon57	c.A7739G	p.Q2580R	CTCTGCTGTTCCT	.	21	2	41	0	.	27	27	0	0	0
PRKCD	5580	ucsc.edu	37	3	53212505	53212505	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRKCD-1378	NM_212539	exon2	c.G67A	p.A23T	GACGAGGCGAACC	.	43	4	86	0	.	1	1	0	0	0
PARP9	83666	hgsc.bcm.edu	37	3	122259457	122259457	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PARP9-525	NM_031458	exon8	c.A1732G	p.S578G	CTGGGCTGATAAT	.	38	2	81	0	.	22	22	0	0	0
KIAA0226	9711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	197427622	197427622	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	KIAA0226-22	NM_014687	exon7	c.G1123C	p.G375R	CCCCACCTCCTTC	.	36	11	76	0	.	1	0	1	0	0
PCDHGB7	56099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140798373	140798373	+	Missense_Mutation	SNP	C	C	G	rs200530054	alternate_allele	TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PCDHGB7-29	NM_018927	exon1	c.C947G	p.T316R	GATATACGATAAA	.	24	4	27	0	C|0.999;T|0.000	0	0	0	0	0
ARHGEF37	389337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149006787	149006787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ARHGEF37-90	NM_001001669	exon11	c.A1613G	p.N538S	TTCAAAACAAGGA	.	116	43	251	0	.	2	1	1	0	0
PRSS16	10279	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	27222771	27222771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PRSS16-94	NM_005865	exon11	c.C1337T	p.T446I	GGGACACAGACCC	.	184	83	266	0	.	0	0	0	0	0
HIST1H1B	3009	broad.mit.edu	37	6	27835118	27835118	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HIST1H1B-585	NM_005322	exon1	c.G190T	p.A64S	TAAGGGCTGCCAA	.	137	5	230	0	.	0	0	0	0	0
HSPA1L	3305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31779708	31779708	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	HSPA1L-230	NM_005527	exon2	c.C42T	p.G14G	GGTGGTGCCCAGG	.	36	16	85	0	.	0	0	0	0	0
CD109	135228	hgsc.bcm.edu	37	6	74524713	74524713	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CD109-155	NM_133493	exon30	c.G3778C	p.V1260L	AATGTTGTATATA	.	32	2	48	0	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824445	20824445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SP8-91	NM_182700	exon2	c.G991A	p.A331T	GCGGCGCCGAAGG	.	4	3	4	2	.	0	0	0	0	0
WBSCR17	64409	broad.mit.edu;bcgsc.ca	37	7	71142235	71142235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	WBSCR17-96	NM_022479	exon9	c.G1444A	p.G482R	GACCAGGGGCCGC	.	517	16	457	0	.	0	0	0	0	0
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103029857	103029857	+	Silent	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC26A5-91	NM_206883	exon13	c.C1326T	p.A442A	CACAATGGCCGAC	.	78	30	78	0	.	0	0	0	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241089	131241089	+	Silent	SNP	C	C	T	rs116656523		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PODXL-136	NM_001018111	exon1	c.G30A	p.L10L	TAGCAGCAGCGCC	.	14	7	5	2	C|0.993;T|0.007	0	0	0	0	0
ZNF707	286075	broad.mit.edu	37	8	144776267	144776267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	ZNF707-67	NM_001100598	exon6	c.G683A	p.R228H	ACACGCGCGAGAA	.	14	3	17	0	.	8	8	0	0	0
MAPK15	225689	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144801161	144801161	+	Splice_Site	SNP	A	A	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	MAPK15-1378	NM_139021	exon6	c.418-2A>T	.	CTCTGCAGCCGTC	.	12	7	26	0	.	8	0	8	0	0
SLC1A1	6505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	4585458	4585458	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SLC1A1-514	NM_004170	exon12	c.T1475C	p.L492P	CAATCCTTGACAA	.	56	27	84	0	.	18	9	9	0	0
APTX	54840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	32988092	32988092	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	APTX-91	NM_001195252	exon3	c.A211T	p.K71X	TTACCTTGACATA	.	76	25	132	0	.	0	0	0	0	0
PTCH1	5727	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	98268787	98268787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PTCH1-3532	NM_000264	exon2	c.G296A	p.G99D	AACTTGCCGCAGT	.	36	17	77	0	.	0	0	0	0	0
GYG2	8908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	2772026	2772026	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	GYG2-132	NM_003918	exon5	c.T248A	p.I83N	GGGTCATCCTCTC	.	47	43	47	0	.	0	0	0	0	0
SYP	6855	bcgsc.ca	37	X	49050639	49050639	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SYP-556	NM_003179	exon4	c.A407G	p.N136S	CCTTTGTTATTCT	.	25	19	51	0	.	3	3	0	0	0
PHKA1	5255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	71829514	71829514	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PHKA1-134	NM_002637	exon23	c.G2566A	p.V856I	GTCCTACTGTCAA	.	53	47	80	0	.	1	0	1	0	0
CRNN	49860	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152382377	152382391	+	In_Frame_Del	DEL	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TCAGGGTTGCTCACT	TCAGGGTTGCTCACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	CRNN-93	NM_016190	exon3	c.1167_1181del	p.389_394del	.	.	73	23	149	0	.	0	0	0	0	0
SEC23A	10484	broad.mit.edu;bcgsc.ca	37	14	39514526	39514526	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SEC23A-95	NM_006364	exon16	c.1740delT	p.F580fs	AAACATAAACTGT	.	25	8	32	0	.	0	0	0	0	0
ZNF226	7769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	44680650	44680650	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	.	NM_001032372	exon6	c.1235delT	p.V412fs	.	.	46	19	68	0	.	0	0	0	0	0
SHANK1	50944	broad.mit.edu	37	19	51171508	51171508	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SHANK1-153	NM_016148	exon22	c.3709delG	p.V1237fs	CCCCCACCAGGGC	.	6	2	19	0	.	0	0	0	0	0
PREB	10113	bcgsc.ca	37	2	27355508	27355521	+	Frame_Shift_Del	DEL	TGGGTCCATTTTCT	TGGGTCCATTTTCT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TGGGTCCATTTTCT	TGGGTCCATTTTCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	PREB-91	NM_013388	exon5	c.702_715del	p.234_239del	AAAAGGTGGGTCC	.	35	5	93	0	.	0	0	0	0	0
NCAPH	23397	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	97017659	97017669	+	Frame_Shift_Del	DEL	AGAAGTGAACT	AGAAGTGAACT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	AGAAGTGAACT	AGAAGTGAACT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NCAPH-228	NM_015341	exon7	c.811_821del	p.271_274del	.	.	55	17	112	0	.	0	0	0	0	0
TRIO	7204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	14387672	14387672	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	TRIO-562	NM_007118	exon22	c.3696delT	p.S1232fs	.	.	94	38	193	0	.	0	0	0	0	0
SYP	6855	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	49050637	49050638	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SYP-556	NM_003179	exon4	c.408_409del	p.136_137del	.	.	27	20	51	0	.	0	0	0	0	0
SYP	6855	hgsc.bcm.edu	37	X	49050637	49050639	+	In_Frame_Del	DEL	TGT	TGT	-	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	TGT	TGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	SYP-556	NM_003179	exon4	c.407_409del	p.136_137del	.	.	28	19	52	0	.	0	0	0	0	0
UGT2A3	79799	broad.mit.edu	37	4	69817176	69817177	+	Frame_Shift_Ins	INS	-	-	AA	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	UGT2A3-92	NM_024743	exon1	c.303_304insTT	p.L101fs	GGTTGATAAGCCT	.	45	9	36	0	.	0	0	0	0	0
NCAPH	23397	bcgsc.ca	37	2	97017653	97017654	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-A4-7732-01A-11D-2136-08	TCGA-A4-7732-10A-01D-2136-08	GA	GA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3f779f68-566c-4996-8aab-4ca7af95061c	b7fc117a-dadb-4f07-8dce-04bf472d7559	.	NCAPH-228	NM_015341	exon7	c.A806T	p.D269F	GCCAGGACTACAG	.	50	17	104	0	.	0	0	0	0	0
