Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
AKAP9	10142	hgsc.bcm.edu	37	7	91652178	91652179	+	In_Frame_Ins	INS	-	-	AAC	rs10644111	bycluster;by1000genomes	TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
BCHE	590	hgsc.bcm.edu;ucsc.edu	37	3	165547909	165547915	+	Frame_Shift_Del	DEL	CTTCATT	CTTCATT	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	CTTCATT	CTTCATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
C14orf149	0	hgsc.bcm.edu;ucsc.edu	37	14	59939728	59939729	+	Frame_Shift_Ins	INS	-	-	ATAAA	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CHRNE	1145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	4804298	4804298	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CLTC	1213	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	57733326	57733327	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CSDA	8531	hgsc.bcm.edu	37	12	10862578	10862579	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CSMD3	114788	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	114448936	114448936	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CTNNA2	1496	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	80136837	80136837	+	Silent	SNP	C	C	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CYTH2	9266	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	48977501	48977501	+	Missense_Mutation	SNP	G	G	A	rs1804728	alternate_allele	TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
DLGAP5	9787	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	55625310	55625310	+	Silent	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
DPY19L1	23333	broad.mit.edu;hgsc.bcm.edu	37	7	34981390	34981390	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
DYNC1H1	1778	broad.mit.edu;hgsc.bcm.edu	37	14	102466737	102466737	+	Splice_Site	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
EFCAB4B	84766	hgsc.bcm.edu	37	12	3806145	3806147	+	In_Frame_Del	DEL	CCT	CCT	-	rs67819433		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	CCT	CCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
EHD3	30845	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	31484489	31484489	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
GCOM1	145781	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	57913819	57913819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
GPR115	221393	hgsc.bcm.edu;ucsc.edu	37	6	47680115	47680115	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
GUCY2D	3000	broad.mit.edu;ucsc.edu	37	17	7909785	7909785	+	Silent	SNP	T	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ITPKB	3707	broad.mit.edu;hgsc.bcm.edu	37	1	226834969	226834969	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
KCNC1	3746	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	17793714	17793714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
KCNQ2	3785	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	62038115	62038115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
KIF3B	9371	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	30918079	30918079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
KRT4	3851	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53207418	53207418	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
KRT76	51350	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	53162498	53162498	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
LRRC19	64922	hgsc.bcm.edu	37	9	26998211	26998211	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
MIOS	54468	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	7636022	7636022	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
NCOR2	9612	broad.mit.edu;ucsc.edu	37	12	124968161	124968161	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
NOS1	4842	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	117681127	117681127	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
NYNRIN	57523	hgsc.bcm.edu;ucsc.edu	37	14	24885703	24885708	+	In_Frame_Del	DEL	GCAGGA	GCAGGA	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	GCAGGA	GCAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PCDHB7	56129	broad.mit.edu;hgsc.bcm.edu	37	5	140554161	140554161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PCNXL3	399909	broad.mit.edu;hgsc.bcm.edu	37	11	65392741	65392741	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PHLPP2	23035	broad.mit.edu;ucsc.edu	37	16	71682850	71682850	+	Silent	SNP	A	G	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PI4KA	5297	hgsc.bcm.edu	37	22	21073055	21073055	+	Silent	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PKHD1	5314	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	51935825	51935825	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
POLE	5426	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	133219900	133219900	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PPP1R15B	84919	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	204378920	204378920	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RAET1G	353091	broad.mit.edu;hgsc.bcm.edu	37	6	150240312	150240312	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RASGRP2	10235	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	64507132	64507132	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RBM6	10180	hgsc.bcm.edu;ucsc.edu	37	3	50112706	50112706	+	Silent	SNP	C	C	T	rs148501050	bycluster;byfrequency;by1000genomes;alternate_allele	TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RBMX	27316	hgsc.bcm.edu	37	X	135956571	135956572	+	Frame_Shift_Ins	INS	-	-	GG	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RPS29	6235	broad.mit.edu;hgsc.bcm.edu	37	14	50053045	50053045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RPUSD2	27079	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	40866017	40866017	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RUSC1	23623	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	155300229	155300229	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RYR1	6261	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	39051932	39051932	+	Silent	SNP	G	G	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SARS	6301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	109772058	109772058	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SLC26A11	284129	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	78196561	78196561	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SLC7A10	56301	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	33702235	33702235	+	Splice_Site	SNP	C	C	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SMC3	9126	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	10	112356197	112356197	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SRCIN1	80725	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	36708271	36708271	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
STAG1	10274	hgsc.bcm.edu;ucsc.edu	37	3	136141378	136141379	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SVIL	6840	hgsc.bcm.edu;ucsc.edu	37	10	29762797	29762805	+	In_Frame_Del	DEL	CGTCATCAG	CGTCATCAG	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	CGTCATCAG	CGTCATCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
SYNE1	23345	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	152711518	152711518	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
TBX18	9096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	85447027	85447027	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
THRAP3	9967	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	36755101	36755101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
TLN2	83660	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	63030443	63030443	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
TRHDE	29953	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	73056887	73056887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
UBC	7316	hgsc.bcm.edu	37	12	125397187	125397187	+	Silent	SNP	G	G	A	rs71458875		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
UTP18	51096	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	49340732	49340732	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
VHL	7428	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	10188268	10188269	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
VPS13B	157680	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	100887766	100887766	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
XPC	7508	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	14200007	14200007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
XPOT	11260	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	64827305	64827305	+	Silent	SNP	C	C	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ZBTB41	360023	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	197168567	197168567	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ZFYVE27	118813	hgsc.bcm.edu;ucsc.edu	37	10	99504492	99504499	+	Frame_Shift_Del	DEL	GGTACTCA	GGTACTCA	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	GGTACTCA	GGTACTCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ZMYM4	9202	broad.mit.edu;hgsc.bcm.edu	37	1	35836041	35836041	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ACSS1	84532	broad.mit.edu	37	20	25038626	25038633	+	Frame_Shift_Del	DEL	GCCGCCCT	-	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	GCCGCCCT	GCCGCCCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
BOLA1	51027	broad.mit.edu	37	1	149871795	149871795	+	Silent	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CASP14	23581	broad.mit.edu	37	19	15164766	15164766	+	Nonsense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
CT47B1	643311	broad.mit.edu	37	X	120009111	120009111	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
FNBP4	23360	broad.mit.edu	37	11	47738988	47738988	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
FNBP4	23360	broad.mit.edu	37	11	47738989	47738989	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
HSD17B7P2	158160	broad.mit.edu	37	10	38645403	38645403	+	Silent	SNP	T	C	C	rs72639552	bycluster;by1000genomes	TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
LMOD2	442721	broad.mit.edu	37	7	123302309	123302309	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
MEF2A	4205	broad.mit.edu	37	15	100252892	100252892	+	Frame_Shift_Del	DEL	A	-	-	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
MUC4	4585	broad.mit.edu	37	3	195505836	195505836	+	Missense_Mutation	SNP	G	C	C	rs78985720	alternate_allele	TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
NOS3	4846	broad.mit.edu	37	7	150693876	150693876	+	Silent	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PKHD1L1	93035	broad.mit.edu	37	8	110441591	110441591	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
PLA2G6	8398	broad.mit.edu	37	22	38536025	38536025	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
RRN3P1	730092	broad.mit.edu	37	16	21817482	21817482	+	Silent	SNP	C	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
Unknown	0	broad.mit.edu	37	15	102292820	102292820	+	Silent	SNP	G	C	C	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
WASH3P	374666	broad.mit.edu	37	15	102515299	102515299	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ZMYM4	9202	broad.mit.edu	37	1	35836039	35836039	+	Nonsense_Mutation	SNP	C	A	A	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
ZNF516	9658	broad.mit.edu	37	18	74154244	74154244	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-AS-3778-01A-01D-0966-08	TCGA-AS-3778-10A-01D-0966-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	7b56e923-2bc5-4368-8e28-42649d3bf169	69e373e0-a10b-4728-af8d-a45ecdb39353	
