Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63119731	63119731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	DOCK7-92	NM_001272002	exon3	c.T244C	p.F82L	GAGGAAATTCAAT	.	85	27	83	0	.	0	0	0	0	0
PLEKHO1	51177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	150131515	150131515	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PLEKHO1-226	NM_016274	exon6	c.C1027A	p.P343T	CGGTCTCCGCCGG	.	127	19	132	0	.	101	101	0	0	0
ENAH	55740	hgsc.bcm.edu	37	1	225707051	225707051	+	Missense_Mutation	SNP	C	C	A	rs140432837	byfrequency;alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ENAH-516	NM_001008493	exon5	c.G651T	p.E217D	CTGCCGCTCCAGG	.	142	14	143	0	C|1.000;T|0.000	5	5	0	0	0
ARHGAP21	57584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	24873803	24873803	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARHGAP21-235	NM_020824	exon26	c.A5415G	p.G1805G	GTGCCCTCCTAGT	.	86	32	77	0	.	23	14	9	0	0
PIPSL	266971	ucsc.edu	37	10	95718760	95718760	+	RNA	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	.	.	.	.	GTCCATGGCTGAG	.	301	1	284	0	.	189	0	189	0	0
MUC5B	727897	broad.mit.edu	37	11	1281625	1281625	+	Splice_Site	SNP	T	T	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_002458	exon47	c.16966+2T>G	.	GGAGGGTAAGTGG	.	116	11	175	10	.	0	0	0	0	0
KRTAP5-4	387267	hgsc.bcm.edu	37	11	1643082	1643082	+	Missense_Mutation	SNP	T	T	C	rs59610171		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_001012709	exon1	c.A242G	p.Y81C	GAGCCATAGCCCC	.	29	4	33	0	.	1	0	1	0	0
ARHGAP1	392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	46702650	46702650	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARHGAP1-227	NM_004308	exon7	c.C546T	p.F182F	CTGCCCGAACTTG	.	58	5	106	0	.	0	0	0	0	0
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62296065	62296065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	AHNAK-109	NM_001620	exon5	c.G5824A	p.V1942M	CCGACACATCCAC	.	188	14	194	0	.	6	6	0	0	0
PC	5091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66636384	66636384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PC-228	NM_000920	exon9	c.A955G	p.K319E	AGTGCTTGCCGTG	.	190	65	336	1	.	1	1	0	0	0
MAML2	84441	hgsc.bcm.edu	37	11	95825248	95825248	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MAML2-850	NM_032427	exon2	c.G1947A	p.Q649Q	CTGCTGCTGCTGC	.	139	25	80	0	.	0	0	0	0	0
MAML2	84441	ucsc.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MAML2-850	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	146	28	113	0	.	0	0	0	0	0
SLC6A12	6539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	306024	306024	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SLC6A12-91	NM_001122848	exon11	c.T1100C	p.F367S	TTGGGGAAGGCGA	.	85	24	116	0	.	7	5	2	0	0
CACNA1C	775	bcgsc.ca	37	12	2794921	2794921	+	Missense_Mutation	SNP	G	G	A	rs71458011		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CACNA1C-34	NM_199460	exon47	c.G5842A	p.E1948K	GATGACGAAAATC	.	175	20	139	7	G|0.500;A|0.500	0	0	0	0	0
R3HDM2	22864	broad.mit.edu	37	12	57648792	57648792	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	R3HDM2-92	NM_014925	exon22	c.T2695G	p.W899G	TGAGCCACTGGAT	.	82	5	69	0	.	3	3	0	0	0
ALX1	8092	broad.mit.edu;bcgsc.ca	37	12	85680745	85680745	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ALX1-24	NM_006982	exon3	c.G646A	p.D216N	AGGACTGACAGCT	.	69	6	52	1	.	0	0	0	0	0
GALNT9	50614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132834320	132834320	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GALNT9-90	NM_001122636	exon5	c.C867T	p.N289N	GGCGGCGTTCGCA	.	72	18	95	0	.	0	0	0	0	0
GJA3	2700	broad.mit.edu	37	13	20717168	20717168	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GJA3-69	NM_021954	exon2	c.C260T	p.T87M	GTGGGCGTGGACA	.	145	5	231	0	.	0	0	0	0	0
GPR12	2835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	27332981	27332981	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GPR12-90	NM_005288	exon2	c.G984A	p.A328A	CGAGCGCGCTCTC	.	127	56	155	0	.	0	0	0	0	0
FRY	10129	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	32823745	32823745	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FRY-142	NM_023037	exon49	c.G7091T	p.R2364L	TCACCCGGAGCAC	.	77	4	67	0	.	6	6	0	0	0
PROSER1	80209	broad.mit.edu	37	13	39600511	39600511	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_025138	exon6	c.G383A	p.G128D	TTGCAGCCCCCCT	.	13	4	17	0	.	0	0	0	0	0
PRPF39	55015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	45564665	45564665	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PRPF39-70	NM_017922	exon2	c.G223A	p.A75T	ACAGAAGCAAATT	.	55	23	52	0	.	4	0	4	0	0
ARG2	384	broad.mit.edu	37	14	68117524	68117524	+	Missense_Mutation	SNP	G	G	T	rs148319106	byfrequency;alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ARG2-90	NM_001172	exon8	c.G952T	p.V318L	GTAGATGTGATTG	.	147	4	180	0	G|0.999;A|0.001	9	9	0	0	0
TGM7	116179	broad.mit.edu	37	15	43571977	43571977	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TGM7-92	NM_052955	exon10	c.G1524T	p.L508L	CAGCAGCAGCTGC	.	40	7	55	1	.	0	0	0	0	0
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75673957	75673957	+	Silent	SNP	T	T	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3A-230	NM_001145358	exon18	c.A3285T	p.A1095A	TACCTCTGCTTCC	.	170	77	152	0	.	0	0	0	0	0
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75673982	75673982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SIN3A-230	NM_001145358	exon18	c.A3260T	p.E1087V	GAATTCTCCTCTT	.	173	75	169	0	.	1	1	0	0	0
CARHSP1	23589	bcgsc.ca	37	16	8949067	8949067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CARHSP1-90	NM_001042476	exon4	c.C398T	p.P133L	GTGCCTGGTGCCA	.	179	6	230	0	.	273	273	0	0	0
FA2H	79152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	74750468	74750468	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FA2H-90	NM_024306	exon6	c.C816G	p.F272L	AGGGGGGAAGACC	.	39	16	34	0	.	0	0	0	0	0
WDR81	124997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1630052	1630052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	WDR81-91	NM_001163809	exon1	c.C1799T	p.P600L	TTGCCCCCGAGCC	.	35	20	19	0	.	0	0	0	0	0
MYBBP1A	10514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4445767	4445767	+	Missense_Mutation	SNP	G	G	T	rs200492249	alternate_allele	TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MYBBP1A-92	NM_014520	exon22	c.C3079A	p.R1027S	GATGACGGGGCCG	.	149	48	116	0	G|0.999;A|0.001	18	11	7	0	0
NDC80	10403	bcgsc.ca	37	18	2585121	2585121	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	NDC80-91	NM_006101	exon7	c.G589T	p.A197S	CATACTGCCATGA	.	55	4	43	0	.	0	0	0	0	0
SHC2	25759	ucsc.edu;bcgsc.ca	37	19	422299	422299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SHC2-392	NM_012435	exon11	c.C1467A	p.H489Q	CCGGCCGTGGTAC	.	32	4	72	0	.	18	18	0	0	0
MEF2BNB	729991	ucsc.edu	37	19	19293489	19293489	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_001145784	exon4	c.C219T	p.A73A	CTTCACGGCGCTG	.	39	4	58	2	.	0	0	0	0	0
ZNF880	400713	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	52877551	52877551	+	Splice_Site	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_001145434	exon3	c.140-1G>A	.	TAAATAGGAATCT	.	78	11	58	0	.	1	0	1	0	0
C2orf61	285051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	47382353	47382353	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	C2orf61-68	NM_173649	exon1	c.T38C	p.I13T	TCCCTTATTGAGG	.	100	31	118	0	.	0	0	0	0	0
ZNF2	7549	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	95847510	95847510	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ZNF2-90	NM_021088	exon5	c.C937G	p.P313A	AGGAAGCCTTATG	.	153	53	168	0	.	0	0	0	0	0
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	197750195	197750195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PGAP1-93	NM_024989	exon12	c.C1225A	p.Q409K	CCCCTTGCAGGCT	.	71	5	105	0	.	0	0	0	0	0
EEF1B2	1933	broad.mit.edu	37	2	207025358	207025358	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	EEF1B2-227	NM_021121	exon3	c.A127G	p.S43G	GTGTCCAGCCCAC	.	195	5	209	1	.	103	103	0	0	0
STK11IP	114790	broad.mit.edu;bcgsc.ca	37	2	220465972	220465972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	STK11IP-91	NM_052902	exon3	c.C110T	p.S37F	TCCTGTCTGGCTG	.	108	7	124	1	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29623219	29623219	+	RNA	SNP	A	A	G	rs34726194		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	FRG1B-22	.	.	.	.	TCGACAATGGTCT	.	917	54	812	13	.	25	25	0	0	0
PCK1	5105	broad.mit.edu	37	20	56140434	56140434	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PCK1-227	NM_002591	exon10	c.C1443T	p.A481A	CTTTGCCATGCGG	.	100	5	75	0	.	24	24	0	0	0
PFKFB4	5210	broad.mit.edu	37	3	48576038	48576038	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PFKFB4-153	NM_004567	exon7	c.C525A	p.G175G	AGGGCTGCCCAGT	.	105	6	136	1	.	1	1	0	0	0
RRP9	9136	broad.mit.edu	37	3	51968675	51968675	+	Silent	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	RRP9-154	NM_004704	exon12	c.C1152T	p.A384A	GAGGAGGGCTGCC	.	110	3	172	0	.	30	30	0	0	0
MFSD1	64747	broad.mit.edu	37	3	158539426	158539426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MFSD1-90	NM_022736	exon10	c.G1051T	p.A351S	CAGGCAGCAAGTG	.	102	4	68	1	.	1	1	0	0	0
TPRG1	285386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	188925189	188925189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TPRG1-90	NM_198485	exon2	c.A16G	p.S6G	ATTGGGAGTTTTG	.	149	23	132	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu;bcgsc.ca	37	3	195490958	195490958	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	MUC4-90	NM_018406	exon11	c.C14002T	p.R4668W	GGGGCCGCCTCTG	.	210	10	330	0	.	0	0	0	0	0
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68534339	68534339	+	Silent	SNP	T	T	C	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	UBA6-90	NM_018227	exon9	c.A723G	p.T241T	TTGTCCTGTCTCC	.	94	5	76	0	.	0	0	0	0	0
ASIC5	51802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	156784757	156784757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_017419	exon2	c.C190T	p.L64F	ACCAGAGCACCCT	.	149	56	144	0	.	0	0	0	0	0
C6orf15	29113	broad.mit.edu	37	6	31079878	31079878	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	C6orf15-90	NM_014070	exon2	c.C258A	p.G86G	TGGGAAGCCATCT	.	117	7	156	1	.	0	0	0	0	0
SYNGAP1	8831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33400480	33400480	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	SYNGAP1-48	NM_006772	exon5	c.C406T	p.R136W	AGCCGACGGCTAA	.	54	16	59	0	.	2	2	0	0	0
RRP36	88745	broad.mit.edu	37	6	42994982	42994982	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	RRP36-90	NM_033112	exon5	c.C517T	p.Q173X	CTGCTTCAGCGAA	.	73	4	89	0	.	0	0	0	0	0
HMGN3	9324	broad.mit.edu	37	6	79918284	79918284	+	Silent	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	HMGN3-226	NM_001201362	exon3	c.C76A	p.R26R	CAGACCGTCTTGT	.	211	5	206	1	.	2	2	0	0	0
LPA	4018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161026202	161026202	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	LPA-74	NM_005577	exon19	c.T2821C	p.Y941H	CGTGGTAGCACTC	.	55	32	66	0	.	0	0	0	0	0
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	27856559	27856559	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TAX1BP1-153	NM_006024	exon15	c.A1987T	p.R663X	CCTGTCAGAGTCC	.	74	44	31	0	.	17	14	3	0	0
ZNF713	349075	bcgsc.ca	37	7	55991337	55991337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	ZNF713-92	NM_182633	exon3	c.G213T	p.L71F	GCAGTTGGAGCTA	.	99	5	98	0	.	2	2	0	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174500	150174500	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	GIMAP8-95	NM_175571	exon5	c.G1630T	p.A544S	AAAACAGCTGTGG	.	100	6	75	1	.	5	5	0	0	0
CHD7	55636	broad.mit.edu	37	8	61775123	61775123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	CHD7-141	NM_017780	exon37	c.C7988T	p.A2663V	CTATGGCGCCTCC	.	69	3	74	0	.	3	3	0	0	0
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133948708	133948708	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	LAMC3-93	NM_006059	exon20	c.G3494A	p.S1165N	CCAGGAGGTGAGT	.	17	7	55	0	.	0	0	0	0	0
TSPYL2	64061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	53114044	53114044	+	Silent	SNP	C	C	A	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	TSPYL2-130	NM_022117	exon3	c.C993A	p.R331R	CAACCGCTCAGGT	.	60	56	75	0	.	0	0	0	0	0
STAG2	10735	bcgsc.ca	37	X	123185066	123185066	+	Silent	SNP	C	C	T	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	STAG2-134	NM_001042749	exon12	c.C1113T	p.F371F	TCGGTTCAAGGTT	.	50	4	53	0	.	0	0	0	0	0
LAMTOR5	10542	hgsc.bcm.edu;bcgsc.ca	37	1	110950347	110950347	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	.	NM_006402	exon1	c.142delG	p.A48fs	.	.	216	42	297	0	.	0	0	0	0	0
PIGB	9488	broad.mit.edu	37	15	55631503	55631503	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	PIGB-226	NM_004855	exon7	c.833delT	p.I278fs	ATCGTATTTTTTT	.	96	7	101	0	.	0	0	0	0	0
HOXD8	3234	hgsc.bcm.edu;bcgsc.ca	37	2	176996164	176996165	+	Frame_Shift_Ins	INS	-	-	CCCTAGCCCT	novel		TCGA-B1-A47N-01A-11D-A25F-10	TCGA-B1-A47N-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	bd2cc59d-f5ce-46ed-beb0-4c80b24cbe71	2041c373-06a2-4ba8-b9f8-3c11c313e0db	.	HOXD8-90	NM_019558	exon2	c.697_698insCCCTAGCCCT	p.A233fs	.	.	53	14	88	0	.	0	0	0	0	0
