Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
HP1BP3	50809	bcgsc.ca	37	1	21071364	21071364	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	HP1BP3-91	NM_016287	exon13	c.A1588G	p.S530G	TTGCACTGGTTGC	.	75	30	102	3	.	86	48	38	0	0
DHX9	1660	ucsc.edu;bcgsc.ca	37	1	182856445	182856445	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	DHX9-92	NM_001357	exon28	c.C3689G	p.S1230C	GCAACTCTGGAGG	.	110	42	163	4	.	166	73	93	0	0
SKIDA1	387640	broad.mit.edu	37	10	21805502	21805502	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	NM_207371	exon4	c.A1250G	p.E417G	TCTCCCTCCTCCT	.	46	3	64	1	.	0	0	0	0	0
TM7SF2	7108	broad.mit.edu	37	11	64883476	64883476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TM7SF2-91	NM_003273	exon10	c.A1208G	p.Q403R	CCTGGCAGGAGTA	.	28	7	49	1	.	113	43	70	0	0
P2RY2	5029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	72945937	72945937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	P2RY2-503	NM_176071	exon3	c.C733T	p.R245C	TCCGTGCGCACCA	.	33	13	51	0	.	0	0	0	0	0
SMARCC2	6601	broad.mit.edu	37	12	56558430	56558430	+	Silent	SNP	A	A	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SMARCC2-229	NM_003075	exon27	c.T3225G	p.G1075G	AGCATTACCCGCC	.	66	16	47	17	.	28	26	2	0	0
SLITRK5	26050	ucsc.edu;bcgsc.ca	37	13	88327922	88327922	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SLITRK5-94	NM_015567	exon2	c.G279C	p.L93F	CCTTTTGAACCGT	.	210	66	276	3	.	0	0	0	0	0
OR4N2	390429	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20296302	20296302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	OR4N2-71	NM_001004723	exon1	c.C695A	p.A232E	CTGAGGCAAAAAA	.	127	21	172	1	.	0	0	0	0	0
SETD3	84193	bcgsc.ca	37	14	99925507	99925507	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SETD3-514	NM_032233	exon5	c.T361A	p.L121I	CCCATAAAAACAA	.	244	98	308	5	.	65	41	24	0	0
EXOC3L4	91828	broad.mit.edu	37	14	103570687	103570687	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	EXOC3L4-23	NM_001077594	exon4	c.G1245A	p.Q415Q	GCTGCAGGGCCTC	.	59	3	97	0	.	16	16	0	0	0
KIF26A	26153	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	104639376	104639376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	KIF26A-24	NM_015656	exon8	c.G1483A	p.A495T	CCCTGCGCCATCT	.	76	6	84	0	.	0	0	0	0	0
CNOT1	23019	broad.mit.edu	37	16	58566190	58566190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	CNOT1-95	NM_016284	exon41	c.A6005G	p.N2002S	GGTGCATTGAGTT	.	141	5	159	0	.	72	69	3	0	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274432	39274432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	NM_033059	exon1	c.G136A	p.V46M	TGGACACACAGCA	.	86	5	77	2	.	0	0	0	0	0
TRAPPC8	22878	broad.mit.edu	37	18	29497627	29497627	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TRAPPC8-159	NM_014939	exon3	c.C356A	p.T119N	GGAGTAGTGGCTA	.	60	3	54	0	.	0	0	0	0	0
MEF2BNB-MEF2B	4207	broad.mit.edu	37	19	19258537	19258537	+	Silent	SNP	A	A	C	rs200716984		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MEF2BNB-MEF2B-522	NM_005919	exon6	c.T363G	p.G121G	CGGATCACCCCCT	.	36	12	48	10	.	11	10	1	0	0
GRIK5	2901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42525580	42525580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	GRIK5-90	NM_002088	exon14	c.C1744T	p.R582C	GGGGGCGTGCCCG	.	62	16	54	0	.	0	0	0	0	0
CRX	1406	broad.mit.edu	37	19	48343201	48343201	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	CRX-153	NM_000554	exon4	c.G877T	p.A293S	CAGAGTGCCTGGA	.	63	5	71	0	.	0	0	0	0	0
ZNF808	388558	broad.mit.edu	37	19	53057180	53057180	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	NM_001039886	exon5	c.T1011C	p.H337H	AATTCATACTGGA	.	130	5	135	3	.	19	19	0	0	0
AGBL5	60509	broad.mit.edu	37	2	27276801	27276801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	AGBL5-154	NM_021831	exon4	c.G425T	p.R142L	TTCATCGTTTCGT	.	90	3	135	0	.	33	33	0	0	0
SPTBN1	6711	ucsc.edu;bcgsc.ca	37	2	54855278	54855278	+	Silent	SNP	G	G	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SPTBN1-140	NM_003128	exon13	c.G1689C	p.V563V	TGGTGTGGAAGAC	.	105	39	126	2	.	60	29	31	0	0
ERCC3	2071	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	128051174	128051174	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	ERCC3-723	NM_000122	exon2	c.G149C	p.G50A	TTGGTGCCTGACT	.	86	6	153	1	.	16	13	3	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	.	.	.	.	AGAGTCGTTGTTG	.	261	10	328	10	.	0	0	0	0	0
OSBPL6	114880	bcgsc.ca	37	2	179255928	179255928	+	Silent	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	OSBPL6-69	NM_001201480	exon23	c.G2505A	p.K835K	TGCAAAGTGCATT	.	90	35	139	3	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625875	29625875	+	RNA	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	FRG1B-22	.	.	.	.	ACAGAATCGCCCT	.	268	10	298	6	.	1	1	0	0	0
TTLL12	23170	ucsc.edu;bcgsc.ca	37	22	43569808	43569808	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TTLL12-90	NM_015140	exon9	c.C1254A	p.C418X	GGGCTTGCAGATC	.	26	4	32	0	.	37	37	0	0	0
MUC4	4585	broad.mit.edu	37	3	195488976	195488976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MUC4-90	NM_018406	exon14	c.C14494T	p.R4832C	CCGTGCGGTTCTG	.	46	3	50	0	.	0	0	0	0	0
DSPP	1834	hgsc.bcm.edu	37	4	88536553	88536553	+	Silent	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	DSPP-90	NM_014208	exon5	c.C2739T	p.D913D	CAGTGACAGCAGT	.	114	28	154	0	.	0	0	0	0	0
IL6ST	3572	ucsc.edu	37	5	55237518	55237518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	IL6ST-290	NM_002184	exon17	c.G2149A	p.E717K	TTTTTTCCTTTTT	.	294	1	283	0	.	20	19	1	0	0
NKX2-5	1482	broad.mit.edu	37	5	172659920	172659920	+	Silent	SNP	C	C	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	NKX2-5-90	NM_004387	exon2	c.G627C	p.P209P	CGGCGGCGGGGGC	.	76	6	85	2	.	0	0	0	0	0
PRIM2	5558	broad.mit.edu;bcgsc.ca	37	6	57393114	57393114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PRIM2-227	.	.	.	.	AAAGTCATTCCTA	.	96	11	109	1	.	0	0	0	0	0
PHKG1	5260	ucsc.edu;bcgsc.ca	37	7	56151013	56151013	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PHKG1-424	NM_001258459	exon7	c.T601G	p.F201V	AGCCAAAGTCTGT	.	145	34	125	3	.	0	0	0	0	0
SBDS	51119	ucsc.edu;bcgsc.ca	37	7	66456233	66456233	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	SBDS-523	NM_016038	exon4	c.T515G	p.M172R	AGCCTCATGTGAG	.	170	95	164	3	.	158	59	99	0	0
CACNA2D1	781	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	81588631	81588631	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	CACNA2D1-96	NM_000722	exon38	c.A3119C	p.Y1040S	TTTCGGTATCTGG	.	167	40	124	1	.	2	1	1	0	0
LMOD2	442721	broad.mit.edu	37	7	123302918	123302918	+	Silent	SNP	T	T	C	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	LMOD2-68	NM_207163	exon2	c.T1278C	p.P426P	TCCCCCTCCTCCT	.	61	16	62	10	.	0	0	0	0	0
TSPAN33	340348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128804350	128804350	+	Silent	SNP	C	C	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TSPAN33-91	NM_178562	exon5	c.C399A	p.A133A	CAATGCCATTGTG	.	76	48	54	0	.	253	94	159	0	0
MAFA	389692	broad.mit.edu	37	8	144511742	144511742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MAFA-278	NM_201589	exon1	c.C835T	p.R279W	TGTGCCGCTGCTG	.	32	3	43	0	.	0	0	0	0	0
INPP5E	56623	ucsc.edu	37	9	139327715	139327715	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	INPP5E-227	NM_019892	exon4	c.C1051A	p.R351S	GCAGACGAGTCTC	.	23	4	17	0	.	7	7	0	0	0
RBM3	5935	broad.mit.edu	37	X	48434994	48434994	+	Splice_Site	SNP	T	T	G	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	RBM3-131	NM_006743	exon5	c.413+2T>G	.	GGCAGGTGGGTAG	.	27	5	31	5	.	0	0	0	0	0
MCAM	4162	broad.mit.edu	37	11	119187759	119187761	+	In_Frame_Del	DEL	CAG	CAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	MCAM-137	NM_006500	exon1	c.51_53del	p.17_18del	CGAGGACAGCAGC	.	7	2	10	0	.	0	0	0	0	0
ADAMTS7	11173	hgsc.bcm.edu	37	15	79058942	79058944	+	In_Frame_Del	DEL	GCA	GCA	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GCA	GCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	ADAMTS7-226	NM_014272	exon19	c.3309_3311del	p.1103_1104del	.	.	39	23	40	0	.	0	0	0	0	0
BPTF	2186	broad.mit.edu	37	17	65905759	65905759	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	BPTF-94	NM_004459	exon12	c.3252delA	p.P1084fs	AAGTCCAAAAAAA	.	248	8	170	0	.	0	0	0	0	0
PIK3R4	30849	broad.mit.edu;bcgsc.ca	37	3	130425829	130425831	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	PIK3R4-1471	NM_014602	exon11	c.2682_2684del	p.894_895del	CCAGCAGAGGACT	.	114	12	151	0	.	0	0	0	0	0
COPS4	51138	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	83996480	83996480	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	COPS4-226	NM_016129	exon10	c.1118delA	p.Q373fs	.	.	71	15	79	0	.	0	0	0	0	0
TNRC18	84629	broad.mit.edu	37	7	5352666	5352668	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	GAG	GAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	TNRC18-46	NM_001080495	exon27	c.7854_7856del	p.2618_2619del	GAGGATGAGGAGG	.	6	1	4	0	.	0	0	0	0	0
NBPF9	400818	broad.mit.edu	37	1	144615250	144615251	+	Frame_Shift_Ins	INS	-	-	AA	rs202042060		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	.	.	.	.	.	CAAAGAGATGTTT	.	8	3	5	0	-|0.759;AA|0.241	0	0	0	0	0
LAMB1	3912	broad.mit.edu	37	7	107569606	107569607	+	Missense_Mutation	DNP	TC	TC	AA	novel		TCGA-B9-A5W7-01A-11D-A31X-10	TCGA-B9-A5W7-10A-01D-A31X-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	04439867-bb35-44ec-aedd-2cd6183e9b6c	9ef148bd-57c7-41bb-98f3-cb473f34b1ab	.	LAMB1-97	NM_002291	exon31	c.G4789T	p.E1621L	GAGCTTCCTTTAC	.	254	7	208	1	.	0	0	0	0	0
