Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	
ABCA13	154664	broad.mit.edu;hgsc.bcm.edu	37	7	48634311	48634311	+	Silent	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
AQR	9716	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	35196663	35196663	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
BBS1	582	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	11	66291217	66291217	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
C22orf9	0	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	22	45607978	45607978	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
C6orf138	0	broad.mit.edu;ucsc.edu	37	6	48035980	48035980	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CAGE1	285782	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	7373333	7373333	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CCDC80	151887	hgsc.bcm.edu;ucsc.edu	37	3	112357355	112357356	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CD180	4064	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	66481767	66481767	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CD300LG	146894	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	17	41926061	41926061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CDCA2	157313	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	25327412	25327412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CHIT1	1118	hgsc.bcm.edu	37	1	203188855	203188856	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CLSTN1	22883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	9801267	9801267	+	Silent	SNP	C	C	T	rs149205224		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CNOT10	25904	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	32750281	32750281	+	Silent	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
COX7A2	1347	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	75947673	75947673	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CPNE7	27132	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	89657544	89657544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CREB3	10488	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	35736114	35736114	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CYP1A2	1544	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75042328	75042328	+	Silent	SNP	G	G	A	rs17861153	bycluster;byfrequency	TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CYP39A1	51302	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	46563727	46563727	+	Silent	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
DENND2C	163259	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	115144173	115144173	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
DSCAM	1826	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	41450747	41450747	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
EIF4G3	8672	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	21221941	21221941	+	Silent	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
FBXL13	222235	hgsc.bcm.edu;ucsc.edu	37	7	102517966	102517966	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
GPLD1	2822	hgsc.bcm.edu;ucsc.edu	37	6	24473886	24473886	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
HLA-B	3106	hgsc.bcm.edu	37	6	31324051	31324051	+	Missense_Mutation	SNP	C	C	A	rs41551018	bycluster;byfrequency;by1000genomes	TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
HNRNPM	4670	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	8528506	8528506	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
INVS	27130	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	9	103002449	103002449	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
KDR	3791	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	55955623	55955623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
KLF3	51274	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	4	38698861	38698861	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
KLHL31	401265	broad.mit.edu;hgsc.bcm.edu	37	6	53520057	53520057	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
MAS1	4142	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	160328147	160328147	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
MEF2D	4209	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	156446973	156446973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
MICAL1	64780	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	109774523	109774523	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
MYO18B	84700	broad.mit.edu;hgsc.bcm.edu	37	22	26422488	26422488	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
N6AMT1	29104	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	21	30255320	30255320	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
NUP205	23165	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	7	135298932	135298932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
OAZ3	51686	broad.mit.edu;hgsc.bcm.edu	37	1	151740624	151740624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
OR9G1	390174	hgsc.bcm.edu	37	11	56468235	56468235	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PAH	5053	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	103306603	103306603	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PCDHB11	56125	hgsc.bcm.edu;ucsc.edu	37	5	140580451	140580453	+	In_Frame_Del	DEL	TAG	TAG	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	TAG	TAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PCMTD1	115294	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	8	52746175	52746175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PDE4DIP	9659	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	144912241	144912241	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PDILT	204474	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	20380853	20380853	+	Silent	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PFN4	375189	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	24338472	24338472	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PTEN	5728	hgsc.bcm.edu	37	10	89711969	89711970	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
RAD17	5884	hgsc.bcm.edu;ucsc.edu	37	5	68682089	68682090	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
RASGRF2	5924	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	5	80511696	80511696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	WXS	454			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
RBM26	64062	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	13	79911406	79911406	+	Missense_Mutation	SNP	C	C	G	rs140188767	alternate_allele	TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
RFX6	222546	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	6	117241586	117241586	+	Silent	SNP	C	C	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
RUVBL2	10856	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	49517740	49517740	+	Splice_Site	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
SALL4	57167	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	20	50406800	50406800	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
SCN10A	6336	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	3	38798548	38798548	+	Silent	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
SCNN1G	6340	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	16	23203706	23203706	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
SIPA1L2	57568	broad.mit.edu;hgsc.bcm.edu	37	1	232651061	232651061	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
SNX33	257364	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	75942230	75942230	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
SPG11	80208	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	44877930	44877930	+	Silent	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
STAG2	10735	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	123179198	123179198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	WXS	PGM			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
STRN3	29966	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	14	31404443	31404443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TARSL2	123283	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	15	102261432	102261432	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TCL6	27004	broad.mit.edu;hgsc.bcm.edu	37	14	96129988	96129988	+	RNA	SNP	T	T	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TMEM132D	121256	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	12	130184668	130184668	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TSHZ3	57616	broad.mit.edu;hgsc.bcm.edu	37	19	31768802	31768802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TTBK1	84630	broad.mit.edu;hgsc.bcm.edu	37	6	43252048	43252048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TTLL5	23093	hgsc.bcm.edu;ucsc.edu	37	14	76349240	76349240	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
TWF2	11344	broad.mit.edu;ucsc.edu	37	3	52273016	52273016	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
XPO1	7514	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	2	61706022	61706022	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
ZFX	7543	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	X	24197791	24197791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
ZNF415	55786	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	19	53612726	53612726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
ZSCAN20	7579	broad.mit.edu;hgsc.bcm.edu;ucsc.edu	37	1	33956856	33956856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
CACNA1H	8912	broad.mit.edu	37	16	1257814	1257814	+	Silent	SNP	C	T	T	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
NCRNA00164	0	broad.mit.edu	37	2	132912316	132912316	+	RNA	SNP	G	A	A	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
PDXDC2	0	broad.mit.edu	37	16	70058574	70058574	+	Splice_Site	SNP	C	G	G	novel		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C	rs1064849	bycluster	TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
Unknown	0	broad.mit.edu	37	22	18844888	18844888	+	RNA	SNP	A	G	G	rs495165		TCGA-BP-5010-01A-02D-1421-08	TCGA-BP-5010-11A-01D-1421-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	553cbe18-6dd3-4b34-b7fe-96a6dd2e6943	6df74e94-bcef-4451-93d9-381eb5804f28	
