Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SKI	6497	hgsc.bcm.edu	37	1	2160390	2160390	+	Missense_Mutation	SNP	C	C	G	rs28384811		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SKI-838	NM_003036	exon1	c.C185G	p.A62G	TGCCGGCGCCGGT	.	3	2	2	1	C|0.953;G|0.047	0	0	0	0	0
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24979017	24979017	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SRRM1-93	NM_005839	exon7	c.A818T	p.K273M	AGGAGAAGACCCG	.	25	7	44	0	.	68	39	29	0	0
SRRM1	10250	hgsc.bcm.edu	37	1	24993412	24993412	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SRRM1-93	NM_005839	exon13	c.C1735G	p.R579G	CCACGACGAAGGT	.	42	3	54	2	.	0	0	0	0	0
PEF1	553115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	32100869	32100869	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PEF1-68	NM_012392	exon2	c.A279G	p.P93P	TGGAGGTGGCTGA	.	93	21	126	0	.	88	43	44	0	1
AKR1A1	10327	ucsc.edu	37	1	46032694	46032694	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	AKR1A1-226	NM_001202413	exon5	c.356+2T>C	.	TTTGAGTGAGCCT	.	92	2	113	0	.	6	6	0	0	0
SLC1A7	6512	broad.mit.edu	37	1	53555558	53555558	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC1A7-155	NM_006671	exon9	c.C1275T	p.A425A	GAGGCCGGCCTGG	.	70	3	80	0	.	0	0	0	0	0
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	232650793	232650793	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SIPA1L2-95	NM_020808	exon1	c.T293G	p.L98R	TCCCACAGTGCCT	.	177	39	224	0	.	4	3	1	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu	37	10	16871011	16871011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CUBN-166	NM_001081	exon66	c.A10557T	p.R3519S	TGAGCCTCTGTCT	.	40	10	50	0	.	0	0	0	0	0
EPC1	80314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	32582651	32582651	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	EPC1-93	NM_025209	exon3	c.G328T	p.A110S	GTTCAGCATCCAA	.	37	11	54	0	.	0	0	0	0	0
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	43088537	43088537	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF33B-90	NM_006955	exon5	c.A1861C	p.K621Q	GTGACTTCTGGCA	.	183	42	205	0	.	48	24	24	0	0
MICU1	10367	hgsc.bcm.edu	37	10	74322781	74322781	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_001195518	exon3	c.A202C	p.S68R	TGTCACTTTTTAG	.	40	5	40	0	.	144	144	0	0	0
IFIT3	3437	broad.mit.edu	37	10	91098669	91098669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFIT3-90	NM_001549	exon2	c.C257A	p.A86D	AACATGCTGACCA	.	66	3	96	0	.	42	42	0	0	0
PDE6C	5146	broad.mit.edu;bcgsc.ca	37	10	95400272	95400272	+	Silent	SNP	G	G	A	rs200781437		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PDE6C-94	NM_006204	exon13	c.G1695A	p.R565R	TTGGCGGCATGGG	.	192	7	235	0	G|1.000;A|0.000	0	0	0	0	0
PGM2L1	283209	hgsc.bcm.edu	37	11	74085550	74085550	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PGM2L1-91	NM_173582	exon2	c.C189T	p.C63C	CATTCGGCAACAA	.	87	5	96	1	.	24	24	0	0	0
ZC3H12C	85463	broad.mit.edu;ucsc.edu	37	11	110036283	110036283	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZC3H12C-68	NM_033390	exon6	c.T2473A	p.C825S	CCATACTGTGGAA	.	24	4	24	0	.	29	14	15	0	0
CD27	939	hgsc.bcm.edu	37	12	6554354	6554354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CD27-659	NM_001242	exon1	c.C93A	p.H31Q	GAGGCACTACTGG	.	22	2	34	0	.	6	6	0	0	0
ESPL1	9700	broad.mit.edu	37	12	53687097	53687097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ESPL1-228	NM_012291	exon31	c.G6202A	p.D2068N	GACCGCGACATTG	.	63	3	73	0	.	7	7	0	0	0
SLC39A5	283375	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	56630209	56630209	+	Silent	SNP	C	C	G	rs139155884	byfrequency;alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC39A5-92	NM_173596	exon9	c.C975G	p.L325L	GAATCTCGAAACA	.	100	27	86	0	C|0.999;T|0.001	6	4	2	0	0
STAT2	6773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	56742947	56742947	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	STAT2-847	NM_005419	exon16	c.G1440A	p.Q480Q	CCCTACCTGAAGG	.	160	41	165	0	.	0	0	0	0	0
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	39265553	39265553	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	FREM2-100	NM_207361	exon1	c.A4072G	p.T1358A	AAACCTACTGGTG	.	98	23	97	0	.	3	2	1	0	0
TPT1	7178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	45913688	45913688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TPT1-90	NM_003295	exon4	c.A343T	p.M115L	CTGTCATAAAAGG	.	196	44	204	1	.	5590	4056	1532	1	1
MLNR	2862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	49796387	49796387	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	MLNR-90	NM_001507	exon2	c.C1113G	p.L371L	GCTGCTCGCAAGG	.	85	24	119	1	.	4	3	1	0	0
APEX1	328	ucsc.edu	37	14	20925021	20925021	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	APEX1-661	NM_001641	exon4	c.439+2T>C	.	CATAGGTGAGACC	.	28	1	39	0	.	0	0	0	0	0
TSC2	7249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2122849	2122849	+	Splice_Site	SNP	G	G	A	rs45517218	alternate_allele	TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TSC2-1908	NM_000548	exon21	c.2221-1G>A	.	TCATCAGCTTTCA	.	60	29	102	0	.	0	0	0	0	0
NLRC3	197358	hgsc.bcm.edu	37	16	3598164	3598164	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	NLRC3-96	NM_178844	exon16	c.A2742G	p.L914L	GAGCTGTAGTGCT	.	9	8	10	0	.	3	3	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	444	67	506	50	.	59	13	46	0	0
KRTAP4-9	100132386	broad.mit.edu	37	17	39261742	39261742	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_001146041	exon1	c.C102T	p.C34C	CACCTGCTGCAGG	.	56	4	41	1	.	0	0	0	0	0
RSAD1	55316	broad.mit.edu	37	17	48559512	48559512	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	RSAD1-90	NM_018346	exon4	c.C535A	p.R179R	GCTCTGCGGACGC	.	131	4	167	0	.	51	51	0	0	0
TBC1D16	125058	bcgsc.ca	37	17	77915895	77915895	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TBC1D16-90	NM_019020	exon11	c.G2019T	p.L673L	CATGGCCAGGTTT	.	30	4	32	0	.	75	75	0	0	0
SLC38A10	124565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	79220316	79220316	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC38A10-70	NM_001037984	exon16	c.G2400A	p.Q800Q	GGAGCGCTGGTTA	.	45	13	53	0	.	146	60	86	0	0
ZNF532	55205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	56587630	56587630	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF532-154	NM_018181	exon4	c.C2111T	p.T704I	CTTCCACTCTTCA	.	80	18	74	0	.	20	12	8	0	0
CCNE1	898	hgsc.bcm.edu;broad.mit.edu	37	19	30308341	30308341	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CCNE1-1270	NM_001238	exon6	c.A355G	p.I119V	TGGAAAATCATGT	.	108	6	118	0	.	9	8	1	0	0
HNRNPUL1	11100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	41800265	41800265	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	HNRNPUL1-69	NM_007040	exon9	c.C1289G	p.P430R	GCCTGCCTGCTGC	.	69	15	89	0	.	147	94	53	0	0
DNMT3A	1788	broad.mit.edu	37	2	25469548	25469548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	DNMT3A-1924	NM_175629	exon10	c.T1220C	p.I407T	CATTCAATCATGG	.	123	3	150	0	.	14	14	0	0	0
SOS1	6654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	39285904	39285904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SOS1-851	NM_005633	exon3	c.G255A	p.W85X	TATTGCCCATTTA	.	109	33	156	0	.	16	11	5	0	0
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160086335	160086335	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TANC1-92	NM_033394	exon27	c.C4398A	p.P1466P	TTCTCCCCAGGAA	.	144	36	146	1	.	9	7	2	0	0
IRS1	3667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	227662872	227662872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IRS1-1272	NM_005544	exon1	c.G583A	p.V195M	GCTTCACGAAGCT	.	93	23	86	0	.	10	7	3	0	0
ZFP64	55734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	50769885	50769885	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZFP64-155	NM_018197	exon6	c.G846A	p.S282S	CTCCCCCGAGTGC	.	46	16	75	0	.	11	6	5	0	0
IFNGR2	3460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	34799207	34799207	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFNGR2-186	NM_005534	exon4	c.A429T	p.P143P	GCCTCCAGAAAAC	.	297	78	372	1	.	165	104	61	0	0
MKL1	57591	broad.mit.edu	37	22	40813489	40813489	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	MKL1-948	NM_020831	exon13	c.C2073T	p.S691S	AGGCTGGGACGAG	.	7	2	13	0	.	1	1	0	0	0
ALS2CL	259173	broad.mit.edu	37	3	46725271	46725271	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ALS2CL-155	NM_001190707	exon10	c.912+1G>A	.	CACTCACCTGGCC	.	235	7	327	0	.	0	0	0	0	0
SEMA5B	54437	hgsc.bcm.edu	37	3	122632248	122632248	+	Missense_Mutation	SNP	C	C	G	rs183401039		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SEMA5B-157	NM_001256347	exon17	c.G2466C	p.E822D	GCAGCCCTCGGGG	.	17	3	10	1	C|0.993;G|0.007	0	0	0	0	0
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	131254172	131254172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CPNE4-92	NM_130808	exon16	c.C1541T	p.A514V	GGAGATGCCTGCA	.	114	25	124	0	.	0	0	0	0	0
TIFA	92610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	113199250	113199250	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	TIFA-90	NM_052864	exon2	c.A323C	p.K108T	TCCATTTTATTTA	.	56	16	86	0	.	16	8	7	0	1
METTL14	57721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119631350	119631350	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	METTL14-90	NM_020961	exon11	c.T1264A	p.S422T	GGAACTTCTGCTG	.	93	16	88	0	.	22	13	9	0	0
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	123161284	123161284	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	KIAA1109-80	NM_015312	exon27	c.G4447C	p.E1483Q	ATTGTAGAAGGTG	.	103	23	117	0	.	28	13	15	0	0
ATG10	83734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	81474374	81474374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ATG10-90	NM_001131028	exon6	c.C421A	p.L141I	CGACTGCTACAGG	.	69	15	89	1	.	25	15	10	0	0
WDR36	134430	broad.mit.edu	37	5	110428267	110428267	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	WDR36-92	NM_139281	exon1	c.G281T	p.R94L	TCAAGCGCCGGTT	.	38	5	55	0	.	12	11	1	0	0
ARHGAP26	23092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	142283206	142283206	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ARHGAP26-660	NM_015071	exon8	c.G804C	p.M268I	CACCATGGAGGGA	.	54	11	60	0	.	37	24	13	0	0
GABRB2	2561	broad.mit.edu	37	5	160753381	160753381	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	GABRB2-91	NM_021911	exon10	c.G1185C	p.L395L	CGTATACAGAGAG	.	113	4	133	0	.	0	0	0	0	0
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	169477372	169477372	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	DOCK2-97	NM_004946	exon41	c.G4184C	p.G1395A	CCCCGGGAGATGA	.	137	32	148	0	.	49	49	0	0	0
F12	2161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176831305	176831305	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	F12-90	NM_000505	exon9	c.C910T	p.P304S	GGGTCGGAGGCGC	.	30	7	38	0	.	10	5	5	0	0
MAML1	9794	broad.mit.edu;bcgsc.ca	37	5	179193285	179193285	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	MAML1-848	NM_014757	exon2	c.G1274T	p.G425V	CCCCGGGCCAGAT	.	204	8	255	0	.	33	31	2	0	0
ZBTB9	221504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	33423041	33423041	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZBTB9-90	NM_152735	exon2	c.A164G	p.Q55R	TGGTGCAGGGCCG	.	247	65	296	2	.	16	9	7	0	0
EEF1A1	1915	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74229620	74229620	+	Missense_Mutation	SNP	T	T	C	rs11266800		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	EEF1A1-226	NM_001402	exon2	c.A130G	p.K44E	CCTCCTTCTCAAA	.	162	13	185	0	.	26	24	2	0	0
ZNF292	23036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	87964665	87964665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF292-72	NM_015021	exon8	c.T1318C	p.W440R	ACTCAATGGCCCT	.	38	5	53	0	.	9	5	4	0	0
HOXA4	3201	hgsc.bcm.edu	37	7	27169876	27169876	+	Silent	SNP	C	C	A	rs112274824		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	HOXA4-153	NM_002141	exon1	c.G477T	p.A159A	GGGGGCCGCCTCG	.	6	4	4	0	C|0.500;A|0.500	0	0	0	0	0
CHN2	1124	broad.mit.edu	37	7	29440319	29440319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	CHN2-229	NM_004067	exon6	c.C451A	p.P151T	ACTAACCCCATCT	.	116	4	97	0	.	38	38	0	0	0
SEMA3A	10371	broad.mit.edu	37	7	83636753	83636753	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SEMA3A-156	NM_006080	exon10	c.C1056G	p.F352L	ACCAAGGAACACC	.	99	3	95	0	.	0	0	0	0	0
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92019370	92019370	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ANKIB1-432	NM_019004	exon15	c.T1992C	p.Y664Y	TTCTTATCCATAT	.	120	29	109	0	.	160	100	60	0	0
SLC26A5	375611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	103019735	103019735	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC26A5-91	NM_206883	exon16	c.T1632G	p.I544M	ATAGTAAATTGGT	.	100	34	113	0	.	0	0	0	0	0
UBE3C	9690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157046775	157046775	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	UBE3C-704	NM_014671	exon20	c.A2822G	p.Q941R	TCCGCCAGGGCCT	.	60	21	59	0	.	83	34	49	0	0
PDLIM2	64236	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	22452077	22452077	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	PDLIM2-90	NM_176871	exon10	c.C1016T	p.S339L	GATTGTCACTGGA	.	167	11	193	0	.	0	0	0	0	0
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	87226722	87226722	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC7A13-90	NM_138817	exon4	c.A1333T	p.R445X	CCAATCTTATTTT	.	53	17	72	0	.	0	0	0	0	0
ZHX2	22882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	123965936	123965936	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZHX2-227	NM_014943	exon3	c.A2186C	p.Q729P	TTCCACAATATTA	.	107	27	128	0	.	36	12	24	0	0
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142477599	142477599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	.	.	.	.	ATGGCCGTCCAGA	.	31	7	62	0	.	0	0	0	0	0
FAM83H	286077	hgsc.bcm.edu	37	8	144810122	144810122	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	FAM83H-92	NM_198488	exon5	c.C1509T	p.D503D	GTGCCCGTCGGGT	.	5	4	4	1	.	7	2	5	0	0
VCP	7415	ucsc.edu	37	9	35062136	35062136	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	VCP-228	NM_007126	exon10	c.946-1G>A	.	ATGAGTCTGCCAG	.	101	1	129	0	.	3	3	0	0	0
SLC28A3	64078	hgsc.bcm.edu;broad.mit.edu	37	9	86955546	86955546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SLC28A3-94	NM_001199633	exon1	c.G3T	p.M1I	CAGCTCCATGCTC	.	94	5	135	0	.	0	0	0	0	0
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114178598	114178598	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	KIAA0368-68	NM_001080398	exon19	c.T2252C	p.M751T	CCGGTCATGTACT	.	54	13	58	1	.	115	59	56	0	0
NOTCH1	4851	hgsc.bcm.edu	37	9	139410162	139410162	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	NOTCH1-5459	NM_017617	exon11	c.C1676T	p.T559M	GTCCCCGTGTACC	.	6	5	4	1	.	0	0	0	0	0
AKAP17A	8227	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	1718090	1718090	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	AKAP17A-40	NM_005088	exon4	c.A917T	p.Q306L	GGAAACAAAAGGA	.	30	5	41	0	.	1	0	1	0	0
SHROOM4	57477	hgsc.bcm.edu	37	X	50350751	50350751	+	Missense_Mutation	SNP	G	G	C	rs201290098		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SHROOM4-131	NM_020717	exon6	c.C3391G	p.Q1131E	CCTCCTGTTGCTT	.	18	2	35	0	.	6	6	0	0	0
MICU1	10367	broad.mit.edu	37	10	74322786	74322786	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_001195518	exon3	c.197delT	p.L66fs	CTTTTTAGGTTGT	.	36	7	40	0	.	0	0	0	0	0
AMOTL1	154810	broad.mit.edu	37	11	94602565	94602565	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	AMOTL1-91	NM_130847	exon12	c.2691delC	p.G897fs	CCGCGGCCGGCTG	.	7	3	12	0	.	0	0	0	0	0
DENR	8562	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	123253468	123253468	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	NM_003677	exon7	c.552delG	p.E184fs	.	.	54	16	60	0	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170034511	170034513	+	In_Frame_Del	DEL	GAT	GAT	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	GAT	GAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	LRP2-175	NM_004525	exon53	c.10193_10195del	p.3398_3399del	.	.	58	12	63	0	.	0	0	0	0	0
ZNF318	24149	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43333130	43333130	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	ZNF318-157	NM_014345	exon2	c.448delA	p.I150fs	.	.	73	25	85	0	.	0	0	0	0	0
IFIT5	24138	broad.mit.edu;bcgsc.ca	37	10	91178386	91178387	+	Frame_Shift_Ins	INS	-	-	GCTC	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	IFIT5-90	NM_012420	exon2	c.1430_1431insGCTC	p.E477fs	TCTGTGAGCTCCG	.	106	11	119	0	.	0	0	0	0	0
SNORD97	692223	hgsc.bcm.edu;bcgsc.ca	37	11	10823073	10823074	+	RNA	INS	-	-	A	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	.	.	.	.	.	.	.	110	32	119	0	.	0	0	0	0	0
OR4N5	390437	bcgsc.ca	37	14	20612342	20612343	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	OR4N5-69	NM_001004724	exon1	c.448_449insT	p.L150fs	CTGTGGCTTGGGG	.	265	29	326	28	.	0	0	0	0	0
SUCNR1	56670	broad.mit.edu	37	3	151599109	151599110	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BQ-5884-01A-11D-1589-08	TCGA-BQ-5884-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	4f2fe918-229b-4e08-a866-96bb1c6fc7d9	9f67477d-e1e3-4aa5-9789-db50e9359ddd	.	SUCNR1-711	NM_033050	exon3	c.778_779insT	p.L260fs	TCACGCCTGGGGA	.	244	13	286	0	.	0	0	0	0	0
