Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RERE	473	broad.mit.edu;bcgsc.ca	37	1	8420197	8420197	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RERE-515	NM_012102	exon19	c.C3370G	p.P1124A	GACTGGGGGTGTC	.	18	5	29	0	.	0	0	0	0	0
AIM1L	55057	broad.mit.edu	37	1	26671979	26671979	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	AIM1L-91	NM_001039775	exon2	c.T1170A	p.P390P	TTTTTTAGGGGGC	.	56	4	76	0	.	0	0	0	0	0
COL11A1	1301	broad.mit.edu	37	1	103428308	103428308	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	COL11A1-586	NM_080629	exon39	c.C2961T	p.T987T	CTCACCGGTTGGT	.	129	4	138	0	.	0	0	0	0	0
SLC6A17	388662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110709565	110709565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC6A17-92	NM_001010898	exon2	c.G14A	p.S5N	AGAACAGCAAAGT	.	45	11	45	0	.	0	0	0	0	0
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	201984378	201984378	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ELF3-226	NM_001114309	exon9	c.G1043C	p.R348P	ATGGCCGGCGACT	.	69	15	100	0	.	0	0	0	0	0
CAPN9	10753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	230883264	230883264	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CAPN9-91	NM_006615	exon1	c.C22G	p.P8A	CGGGCCCCAGGGC	.	150	45	151	1	.	0	0	0	0	0
C10orf54	64115	broad.mit.edu	37	10	73521465	73521465	+	Missense_Mutation	SNP	C	C	T	rs200235042		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	C10orf54-515	NM_022153	exon2	c.G401A	p.R134H	AGGTTGCGCATGG	.	56	3	58	0	C|0.999;T|0.000	0	0	0	0	0
C10orf62	414157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	99349694	99349694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	C10orf62-90	NM_001009997	exon1	c.T40A	p.S14T	GAAACCTCTGAGT	.	97	7	117	0	.	0	0	0	0	0
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	8751785	8751785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ST5-227	NM_005418	exon6	c.C1052T	p.P351L	TCTGGGGGTGGGC	.	109	25	125	0	.	0	0	0	0	0
ZNF143	7702	hgsc.bcm.edu;broad.mit.edu	37	11	9519236	9519236	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ZNF143-90	NM_003442	exon10	c.A856C	p.S286R	TTAAAAAGTCACG	.	79	6	93	2	.	0	0	0	0	0
OR8H3	390152	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	55890388	55890388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	OR8H3-70	NM_001005201	exon1	c.C540A	p.D180E	CTGTGACACTTCC	.	340	19	377	1	.	0	0	0	0	0
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62290316	62290316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	AHNAK-109	NM_001620	exon5	c.G11573A	p.G3858D	TTGGGACCTTTCA	.	412	35	422	0	.	0	0	0	0	0
TUT1	64852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62346405	62346405	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TUT1-91	NM_022830	exon5	c.A902G	p.D301G	TGTGAATCTGGAG	.	70	19	76	0	.	0	0	0	0	0
PC	5091	broad.mit.edu	37	11	66636400	66636400	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PC-228	NM_000920	exon9	c.G939T	p.L313L	GTCCACCAGGAAC	.	108	4	138	0	.	0	0	0	0	0
ARHGEF12	23365	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	120336044	120336044	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ARHGEF12-661	NM_015313	exon28	c.G2712T	p.K904N	GAAAAAGGATTCT	.	101	30	118	0	.	0	0	0	0	0
ESAM	90952	hgsc.bcm.edu	37	11	124623757	124623757	+	Missense_Mutation	SNP	G	G	A	rs200154876	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ESAM-90	NM_138961	exon7	c.C958T	p.R320W	GTGGCCGGAGGGC	.	58	3	69	0	G|0.999;C|0.000	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu;broad.mit.edu	37	12	49431830	49431830	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MLL2-612	NM_003482	exon34	c.T9309A	p.A3103A	ATCAGCAGCAGGG	.	12	4	16	0	.	0	0	0	0	0
MCRS1	10445	hgsc.bcm.edu	37	12	49956786	49956786	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MCRS1-289	NM_001012300	exon7	c.C842G	p.T281R	TTACCTGTCTGGT	.	28	2	19	0	.	0	0	0	0	0
ERBB3	2065	hgsc.bcm.edu;broad.mit.edu	37	12	56495577	56495577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ERBB3-1403	NM_001982	exon28	c.C3767T	p.P1256L	CAACTCCAGATGA	.	126	9	91	1	.	0	0	0	0	0
MON2	23041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	62972277	62972277	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MON2-514	NM_015026	exon31	c.G4567A	p.D1523N	AATATTGATGTCG	.	47	9	46	0	.	0	0	0	0	0
NAP1L1	4673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	76444427	76444427	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NAP1L1-92	NM_004537	exon12	c.G943A	p.D315N	CAGCATCATCATC	.	82	27	85	0	.	0	0	0	0	0
HMGB1	3146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31036826	31036826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HMGB1-227	NM_002128	exon4	c.C320T	p.S107F	TACTCAGAGCAGA	.	99	23	108	0	.	0	0	0	0	0
POSTN	10631	bcgsc.ca	37	13	38154768	38154768	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	POSTN-516	NM_006475	exon11	c.A1459G	p.I487V	GGAATATGTGAAT	.	287	9	309	2	.	0	0	0	0	0
ELF1	1997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41515309	41515309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ELF1-227	NM_172373	exon8	c.C1004T	p.P335L	ACCCCTGGACTTG	.	211	46	235	0	.	0	0	0	0	0
GPHN	10243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	67389425	67389425	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GPHN-228	NM_001024218	exon7	c.G499C	p.D167H	GCCATTGACCTTT	.	221	63	255	0	.	0	0	0	0	0
ATG2B	55102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	96761860	96761860	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ATG2B-93	NM_018036	exon35	c.T5177A	p.L1726H	GCAGAAAGACTTG	.	112	36	134	0	.	0	0	0	0	0
NOMO2	283820	hgsc.bcm.edu	37	16	18532277	18532277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NOMO2-23	NM_173614	exon19	c.G2083A	p.V695I	CTAAGACCAAGGC	.	337	82	271	0	.	0	0	0	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31371300	31371300	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ITGAX-229	NM_000887	exon7	c.G621A	p.R207R	ATTCAGGCGCAGC	.	223	108	136	0	.	0	0	0	0	0
TK2	7084	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	66547680	66547680	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TK2-115	NM_004614	exon9	c.A653T	p.E218V	AGCCACTCCTCAT	.	87	7	59	0	.	0	0	0	0	0
GSE1	23199	hgsc.bcm.edu	37	16	85690103	85690103	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	.	NM_014615	exon7	c.G1144A	p.E382K	GAGCGCGAGCGCG	.	6	5	1	1	.	0	0	0	0	0
SLC13A5	284111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	6606332	6606332	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC13A5-90	NM_001143838	exon5	c.A673C	p.T225P	TCCCGGTCAGGGT	.	141	39	123	0	.	0	0	0	0	0
PIK3R5	23533	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	8812455	8812455	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PIK3R5-1146	NM_001142633	exon3	c.T140C	p.L47P	CTGACCAGCTCCT	.	26	4	36	0	.	0	0	0	0	0
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26948415	26948415	+	Splice_Site	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	KIAA0100-93	NM_014680	exon28	c.5059+2T>C	.	GGGCTGACCTGTG	.	283	62	252	0	.	0	0	0	0	0
KRTAP1-1	81851	hgsc.bcm.edu	37	17	39197393	39197393	+	Missense_Mutation	SNP	T	T	C	rs201732142		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	.	NM_030967	exon1	c.A257G	p.Y86C	GTCTGGTAGCAGC	.	100	11	77	2	.	0	0	0	0	0
MPO	4353	hgsc.bcm.edu	37	17	56356475	56356475	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MPO-156	NM_000250	exon6	c.A779G	p.D260G	TCGTGGTCCAACA	.	27	3	19	0	.	0	0	0	0	0
NACA2	342538	ucsc.edu	37	17	59668318	59668318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NACA2-91	NM_199290	exon1	c.G224A	p.R75K	CGTGCCCTCTTTT	.	532	1	390	1	.	0	0	0	0	0
HID1	283987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72954436	72954436	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	.	NM_030630	exon11	c.G1378C	p.D460H	GCAGGTCGGCGTG	.	48	5	28	0	.	0	0	0	0	0
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73752809	73752809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ITGB4-227	NM_000213	exon37	c.C4922T	p.P1641L	GCACTCCCAGTGC	.	124	29	112	0	.	0	0	0	0	0
GADD45B	4616	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	2477582	2477582	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GADD45B-90	NM_015675	exon4	c.T466A	p.S156T	TACATCTCTCTTC	.	39	13	27	0	.	0	0	0	0	0
S1PR4	8698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3179456	3179456	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	S1PR4-591	NM_003775	exon1	c.C666T	p.L222L	GGGCCTCTATGGG	.	263	85	245	0	.	0	0	0	0	0
SLC7A10	56301	hgsc.bcm.edu	37	19	33706864	33706864	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC7A10-91	NM_019849	exon2	c.C167G	p.S56W	ATGCCCGAGCCGA	.	18	2	12	0	.	0	0	0	0	0
BCAM	4059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	45322968	45322968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	BCAM-91	NM_001013257	exon13	c.G1748T	p.R583L	AGCGGCGGGAGAA	.	39	18	42	0	.	0	0	0	0	0
CCDC114	93233	broad.mit.edu	37	19	48800292	48800292	+	Missense_Mutation	SNP	T	T	G	rs190723331	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CCDC114-91	NM_144577	exon14	c.A1954C	p.T652P	GGCCGGTGCTGGA	.	83	4	77	2	T|0.999;C|0.000	0	0	0	0	0
HRC	3270	hgsc.bcm.edu	37	19	49657763	49657763	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HRC-91	NM_002152	exon1	c.A732T	p.E244D	ATCTTCTTCATGG	.	33	2	30	1	.	0	0	0	0	0
FAM161A	84140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	62066806	62066806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FAM161A-136	NM_032180	exon3	c.C1333T	p.H445Y	ACTTGTGTTCTGA	.	170	52	179	0	.	0	0	0	0	0
LMAN2L	81562	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	97373520	97373520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	LMAN2L-90	NM_001142292	exon8	c.A868G	p.T290A	CTGGGGTTCTCTC	.	154	37	167	0	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170072853	170072853	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	LRP2-175	NM_004525	exon35	c.T5736C	p.T1912T	AAAGAGAGTTTTC	.	105	41	102	0	.	0	0	0	0	0
SATB2	23314	hgsc.bcm.edu	37	2	200320598	200320598	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SATB2-91	NM_015265	exon3	c.G163C	p.V55L	CTCCCACGGCCTT	.	7	5	1	1	.	0	0	0	0	0
PTPRA	5786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3016279	3016279	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PTPRA-227	NM_002836	exon25	c.G1969T	p.D657Y	TATGGAGATATTA	.	26	12	40	0	.	0	0	0	0	0
GFRA4	64096	hgsc.bcm.edu	37	20	3641542	3641542	+	Silent	SNP	G	G	A	rs58634535		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GFRA4-90	NM_145762	exon2	c.C441T	p.L147L	CGGAGAGAGGCCC	.	7	7	2	2	G|0.788;A|0.212	0	0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29625905	29625905	+	RNA	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FRG1B-22	.	.	.	.	AATATCTTGGTAT	.	133	6	163	1	.	0	0	0	0	0
PARD6B	84612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49366607	49366607	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PARD6B-91	NM_032521	exon3	c.T701C	p.M234T	CAGACATGATGAT	.	156	52	153	0	.	0	0	0	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46067216	46067216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	KRTAP10-11-91	NM_198692	exon1	c.G841A	p.A281T	CGCCCCGCAAGCT	.	70	4	71	0	.	0	0	0	0	0
EMID1	129080	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29627008	29627008	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	EMID1-90	NM_133455	exon6	c.466-1G>T	.	TCTTCAGATGACC	.	103	27	85	0	.	0	0	0	0	0
SBF1	6305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50885659	50885659	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SBF1-90	NM_002972	exon41	c.C5594G	p.T1865R	CGACGCGTTGTCT	.	56	13	53	0	.	0	0	0	0	0
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	37340849	37340849	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GOLGA4-93	NM_001172713	exon10	c.T1139C	p.L380P	AACAGCTTGAACA	.	78	41	72	0	.	0	0	0	0	0
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108788509	108788509	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	MORC1-98	NM_014429	exon9	c.A785T	p.K262I	AGATGTTTAGTTT	.	156	42	119	0	.	0	0	0	0	0
PODXL2	50512	broad.mit.edu	37	3	127379564	127379564	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PODXL2-91	NM_015720	exon3	c.A693G	p.S231S	CTCATCAGGTGTG	.	173	3	134	0	.	0	0	0	0	0
TACC3	10460	hgsc.bcm.edu	37	4	1741439	1741439	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TACC3-91	NM_006342	exon11	c.C1952G	p.T651R	AGGCGACACAGGA	.	9	2	9	0	.	0	0	0	0	0
DAPP1	27071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	100787280	100787280	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	DAPP1-93	NM_014395	exon8	c.774+2T>G	.	AATTGGTGAGAAT	.	31	8	35	1	.	0	0	0	0	0
SLC30A5	64924	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	68399835	68399835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SLC30A5-226	NM_024055	exon4	c.A320G	p.K107R	AAGACAAAAAGTT	.	30	10	31	0	.	0	0	0	0	0
F2RL2	2151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	75913735	75913735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	F2RL2-228	NM_004101	exon2	c.T797C	p.L266S	AATGCCAAGGAGA	.	59	14	45	0	.	0	0	0	0	0
BHMT	635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	78415082	78415082	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	BHMT-91	NM_001713	exon3	c.T167C	p.V56A	TCCCAGTTCGCCA	.	125	41	151	0	.	0	0	0	0	0
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140481178	140481178	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PCDHB3-92	NM_018937	exon1	c.T945C	p.Y315Y	TAGTTATGAAGTC	.	86	32	98	0	.	0	0	0	0	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167674296	167674296	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	.	NM_001122679	exon27	c.C6325A	p.R2109S	CTCTACCGCTATG	.	185	57	182	0	.	0	0	0	0	0
PFN3	345456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176827191	176827191	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PFN3-90	NM_001029886	exon1	c.A387G	p.I129M	CCCGCGTATGAGT	.	52	14	39	0	.	0	0	0	0	0
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30893383	30893383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	VARS2-26	NM_001167734	exon28	c.G2938C	p.G980R	CCCCTGGGCACCC	.	41	9	58	0	.	0	0	0	0	0
TTBK1	84630	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43226956	43226956	+	Silent	SNP	C	C	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TTBK1-353	NM_032538	exon11	c.C1197G	p.V399V	TGAAGTCTGGGAG	.	104	26	100	0	.	0	0	0	0	0
GPR110	266977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	46977043	46977043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GPR110-71	NM_153840	exon11	c.C2128T	p.P710S	TGAGAGGGCACCC	.	56	16	54	0	.	0	0	0	0	0
AIM1	202	hgsc.bcm.edu	37	6	106960432	106960432	+	Silent	SNP	C	C	G	rs146137130	byfrequency;alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	AIM1-139	NM_001624	exon1	c.C216G	p.S72S	TGCCTCCGCTGCG	.	14	4	17	0	C|0.995;A|0.005	0	0	0	0	0
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	121576521	121576521	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	C6orf170-92	NM_152730	exon17	c.A1971T	p.V657V	ACCCTCTACTGGA	.	116	43	118	0	.	0	0	0	0	0
HIVEP2	3097	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	143091819	143091819	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HIVEP2-95	NM_006734	exon5	c.A4057G	p.I1353V	GAGAAATGCTTGT	.	96	29	90	0	.	0	0	0	0	0
CADPS2	93664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	122269335	122269335	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CADPS2-94	NM_001167940	exon4	c.T834C	p.D278D	CCGGCCATCAAGT	.	33	6	35	0	.	0	0	0	0	0
NUP205	23165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	135276257	135276257	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NUP205-207	NM_015135	exon11	c.T1533G	p.I511M	TTATATTCCTTAT	.	130	46	150	0	.	0	0	0	0	0
RGS20	8601	bcgsc.ca	37	8	54764573	54764573	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RGS20-227	NM_170587	exon1	c.T114C	p.I38I	AGACATTCACCAA	.	109	34	121	0	.	0	0	0	0	0
PPAPDC2	403313	hgsc.bcm.edu	37	9	4662477	4662477	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PPAPDC2-90	NM_203453	exon1	c.C102A	p.G34G	TGGCGGCGGCAGC	.	10	7	4	1	.	0	0	0	0	0
FANCG	2189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35077002	35077002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FANCG-724	NM_004629	exon6	c.T743C	p.V248A	GTGTACACCTGGA	.	106	28	129	1	.	0	0	0	0	0
TLE4	7091	broad.mit.edu	37	9	82267584	82267584	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	TLE4-524	NM_007005	exon7	c.A467G	p.Q156R	GGCTCCAGCCCCC	.	145	4	171	0	.	0	0	0	0	0
SMC2	10592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	106862707	106862707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	SMC2-210	NM_006444	exon7	c.T629C	p.L210S	AAAAATTAAAAGA	.	118	35	142	0	.	0	0	0	0	0
PTGR1	22949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114359672	114359672	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	PTGR1-90	NM_001146108	exon2	c.A31C	p.K11Q	AGTGCTTCTTCAG	.	35	15	46	0	.	0	0	0	0	0
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	128064468	128064468	+	Missense_Mutation	SNP	C	C	T	rs139510593	alternate_allele	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	GAPVD1-93	NM_015635	exon3	c.C392T	p.T131I	TTTACACAGTTTT	.	243	75	260	1	C|1.000;G|0.000	0	0	0	0	0
DNM1	1759	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131010868	131010868	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	DNM1-228	.	.	.	.	GCCAGCGAGACCG	.	84	26	90	0	.	0	0	0	0	0
CERCAM	51148	broad.mit.edu	37	9	131196837	131196837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	CERCAM-69	NM_016174	exon11	c.C1480T	p.R494C	CCTCTGCGCCGCA	.	76	3	79	0	.	0	0	0	0	0
EIF2S3	1968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24089815	24089815	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	EIF2S3-130	NM_001415	exon10	c.C1153T	p.R385C	GGTGTACGCACTG	.	46	30	68	0	.	0	0	0	0	0
KDM6A	7403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44949021	44949021	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	KDM6A-2748	NM_021140	exon25	c.G3582A	p.W1194X	TTGGTGGCCCAAT	.	37	29	47	0	.	0	0	0	0	0
ELF4	2000	hgsc.bcm.edu	37	X	129201251	129201251	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ELF4-659	NM_001421	exon9	c.T1437C	p.A479A	CAGTGGAGCCCCT	.	47	3	46	0	.	0	0	0	0	0
IL9R	3581	hgsc.bcm.edu	37	X	155239602	155239602	+	Missense_Mutation	SNP	G	G	A	rs2228650	bycluster;bysubmitter	TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	IL9R-40	NM_002186	exon9	c.G1094A	p.R365H	CAGCGCGTCCTTG	.	76	5	76	2	G|1.000;|0.000	0	0	0	0	0
NPS	594857	broad.mit.edu;bcgsc.ca	37	10	129350829	129350829	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	NPS-22	NM_001030013	exon3	c.196delT	p.F66fs	AAGATGTTTGTGA	.	339	47	413	0	.	0	0	0	0	0
HMGB1	3146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	31036836	31036836	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	HMGB1-227	NM_002128	exon4	c.310delC	p.L104fs	.	.	82	19	102	0	.	0	0	0	0	0
ZNF543	125919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	57839185	57839185	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ZNF543-92	NM_213598	exon4	c.355delG	p.G119fs	.	.	69	15	69	0	.	0	0	0	0	0
RGS20	8601	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	54764571	54764572	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RGS20-227	NM_170587	exon1	c.112_113del	p.38_38del	.	.	119	38	126	0	.	0	0	0	0	0
RGS20	8601	hgsc.bcm.edu	37	8	54764571	54764573	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	RGS20-227	NM_170587	exon1	c.112_114del	p.38_38del	.	.	121	21	127	0	.	0	0	0	0	0
ZFP14	57677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36831480	36831481	+	Missense_Mutation	DNP	GC	GC	AT	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	ZFP14		exon5	c.G1247A	p.S416N	TGAATGCTCTGGT	.	164.0	53.0	142.0	0.0	.	0	0	0	0	0
FCGBP	8857	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	40395905	40395906	+	Missense_Mutation	DNP	TC	TC	GT	novel		TCGA-BQ-5886-01A-11D-1589-08	TCGA-BQ-5886-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	74be0abf-970a-477d-aa8c-7982e32b739f	9d0a86f4-1735-4a01-8c16-37b05d7bc326	.	FCGBP		exon15	c.G7491A	p.N2498H	CACGTTCTCCTGC	.	414.0	50.0	397.0	1.0	.	0	0	0	0	0
