Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
NADK	65220	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1686870	1686870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NADK-44	NM_001198994	exon9	c.T1066A	p.F356I	TCAGGAAGCCCAG	.	268	48	259	0	.	90	57	33	0	0
RPL11	6135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	24021204	24021204	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RPL11-226	NM_000975	exon4	c.T319G	p.F107V	TTTGGTTTTGGGA	.	131	43	127	0	.	2399	1566	833	0	0
ZSCAN20	7579	bcgsc.ca	37	1	33956714	33956714	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZSCAN20-93	NM_145238	exon6	c.A856G	p.S286G	AAAAGGAGCACTG	.	78	4	77	0	.	3	3	0	0	0
CC2D1B	200014	hgsc.bcm.edu	37	1	52822691	52822691	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	CC2D1B-92	NM_032449	exon16	c.G1878C	p.M626I	CAGAAGCATTTTT	.	9	3	8	0	.	71	44	27	0	0
KCND3	3752	bcgsc.ca	37	1	112525250	112525250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KCND3-155	NM_004980	exon2	c.C99A	p.D33E	GTTCTTGTCGGCC	.	84	5	52	0	.	1	1	0	0	0
S100A7L2	645922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153409541	153409541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	S100A7L2-69	NM_001045479	exon3	c.G332T	p.S111I	CACTGGCTTCCCC	.	309	63	375	2	.	0	0	0	0	0
ZBTB37	84614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173839638	173839638	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZBTB37-90	NM_032522	exon3	c.T275C	p.I92T	GGCGGATATGCCT	.	80	19	71	0	.	3	2	1	0	0
NFASC	23114	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	204923960	204923960	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NFASC-139	NM_001005388	exon7	c.C416A	p.S139Y	CAGAATCTCCTCT	.	213	51	190	0	.	0	0	0	0	0
FMN2	56776	bcgsc.ca	37	1	240371517	240371517	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	FMN2-145	NM_020066	exon5	c.T3405A	p.L1135L	CCCTCTTCCCGGA	.	41	14	32	1	.	0	0	0	0	0
ITGB1	3688	broad.mit.edu	37	10	33208866	33208866	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ITGB1-1084	NM_002211	exon11	c.T1416C	p.P472P	ACTTTCAGGGATG	.	172	4	187	0	.	225	224	1	0	0
IFIT5	24138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	91177427	91177427	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	IFIT5-90	NM_012420	exon2	c.A471G	p.Q157Q	TTATCAAAAGGCT	.	102	24	94	0	.	13	10	3	0	0
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	124352013	124352013	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DMBT1-494	NM_007329	exon20	c.G2402A	p.R801H	ATGTGCGCTGCTC	.	321	21	254	1	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1268402	1268402	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_002458	exon31	c.G10292A	p.S3431N	CCAGCAGCACAGT	.	22	6	11	0	.	0	0	0	0	0
MS4A8	83661	hgsc.bcm.edu;bcgsc.ca	37	11	60482801	60482801	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_031457	exon7	c.A667G	p.N223D	TATCCAAACATCT	.	75	6	79	0	.	0	0	0	0	0
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62489600	62489600	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HNRNPUL2-22	NM_001079559	exon7	c.G1348T	p.E450X	ATTCCTCTATGGT	.	101	25	74	0	.	0	0	0	0	0
RAD51AP1	10635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	4657343	4657343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RAD51AP1-227	NM_001130862	exon6	c.A456T	p.L152F	TTATTTAGGTAAG	.	108	46	82	0	.	0	0	0	0	0
LMBR1L	55716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49500795	49500795	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	LMBR1L-227	NM_018113	exon2	c.C106A	p.L36I	GGCAGAGGATGTA	.	317	136	219	0	.	30	11	19	0	0
TMEM19	55266	broad.mit.edu	37	12	72092800	72092800	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TMEM19-90	NM_018279	exon5	c.C758A	p.P253Q	CTGCCCCGCAGTG	.	184	5	178	1	.	58	58	0	0	0
PAH	5053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	103234258	103234258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PAH-72	NM_000277	exon12	c.T1235C	p.V412A	TAGCGAACTGAGA	.	144	64	140	0	.	3	0	3	0	0
HCAR2	338442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	123187395	123187395	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HCAR2-91	NM_177551	exon1	c.A436T	p.I146F	AGATGATGGCTGC	.	167	36	139	0	.	2	2	0	0	0
CHRNA5	1138	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78885562	78885562	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	CHRNA5-516	NM_000745	exon6	c.A1374C	p.L458F	TATATTAATACCA	.	59	13	57	0	.	1	1	0	0	0
ADCY9	115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	4029168	4029168	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ADCY9-139	NM_001116	exon8	c.C2628T	p.P876P	CAGTGCGGGAAGC	.	157	30	140	0	.	40	25	15	0	0
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20787239	20787239	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ACSM3-91	NM_005622	exon3	c.C298T	p.L100L	GAGGAACTGGGAT	.	248	53	188	0	.	31	16	15	0	0
WDR81	124997	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	1631524	1631524	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	WDR81-91	NM_001163809	exon1	c.G3271A	p.V1091M	CTCTATGTGACTG	.	152	25	102	0	.	18	18	0	0	0
PELP1	27043	hgsc.bcm.edu	37	17	4575451	4575451	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PELP1-24	NM_014389	exon16	c.A2835G	p.E945E	TTCTTCTTCTTCC	.	9	4	6	2	.	98	33	65	0	0
RNF167	26001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4848277	4848277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	RNF167-226	NM_015528	exon10	c.T1019C	p.L340P	CCCCACTGTCCCC	.	450	100	309	1	.	470	363	107	0	0
KIF1C	10749	ucsc.edu	37	17	4908297	4908297	+	Splice_Site	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KIF1C-92	NM_006612	exon13	c.1165+2T>C	.	GGAAGGTCGAGGT	.	210	1	155	1	.	0	0	0	0	0
SLC16A11	162515	hgsc.bcm.edu	37	17	6946083	6946083	+	Splice_Site	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SLC16A11-91	NM_153357	exon4	c.419-1G>A	.	CAAAGCCTGCGAA	.	13	9	8	2	.	0	0	0	0	0
MYO19	80179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	34871758	34871758	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MYO19-23	NM_001163735	exon8	c.A490G	p.I164V	CTGCAATCTTGTG	.	74	13	54	0	.	32	21	11	0	0
DGKE	8526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54926211	54926211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DGKE-289	NM_003647	exon6	c.A1043G	p.D348G	AACTAGATCGGTA	.	112	26	93	0	.	0	0	0	0	0
SLC14A2	8170	broad.mit.edu	37	18	43262338	43262338	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SLC14A2-93	NM_001242692	exon21	c.C2617T	p.L873F	TTCCTGCTCCTGA	.	530	7	514	0	.	0	0	0	0	0
STAP2	55620	hgsc.bcm.edu;broad.mit.edu	37	19	4328673	4328673	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	STAP2-90	NM_001013841	exon6	c.G589C	p.G197R	CGCACCCGTTGTG	.	23	10	19	0	.	0	0	0	0	0
ACER1	125981	broad.mit.edu	37	19	6312191	6312191	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ACER1-90	NM_133492	exon3	c.T319C	p.C107R	AATAGCAGCGGGG	.	63	8	62	0	.	0	0	0	0	0
HNRNPM	4670	ucsc.edu	37	19	8527467	8527467	+	Splice_Site	SNP	T	T	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HNRNPM-68	NM_031203	exon3	c.336+2T>G	.	CAAGGGTAAGTGT	.	132	1	150	0	.	0	0	0	0	0
KIF5C	3800	ucsc.edu	37	2	149799207	149799207	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KIF5C-69	NM_004522	exon7	c.G522A	p.V174V	GTTTGTGTCGAGC	.	36	4	25	0	.	0	0	0	0	0
DIS3L2	129563	hgsc.bcm.edu	37	2	233199380	233199380	+	Missense_Mutation	SNP	A	A	G	rs2697798		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DIS3L2-136	NM_152383	exon19	c.A2329G	p.I777V	ATGGGCATCCTGA	.	26	6	8	2	.	51	51	0	0	0
ALPI	248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233322816	233322816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ALPI-90	NM_001631	exon8	c.C965T	p.P322L	GGAACCCCCGCGG	.	108	26	105	0	.	1	0	1	0	0
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37536822	37536822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PPP1R16B-228	NM_015568	exon10	c.G1180T	p.E394X	GACCAAGAGAATA	.	84	14	49	0	.	0	0	0	0	0
PPP1R16B	26051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37536828	37536828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PPP1R16B-228	NM_015568	exon10	c.A1186G	p.K396E	GAGAATAAGGACC	.	73	12	43	0	.	0	0	0	0	0
ADA	100	broad.mit.edu;bcgsc.ca	37	20	43264929	43264929	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ADA-653	NM_000022	exon2	c.G34A	p.V12M	GTTCCACCTGCAA	.	24	5	32	0	.	0	0	0	0	0
APOL6	80830	hgsc.bcm.edu	37	22	36055619	36055619	+	Silent	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	APOL6-90	NM_030641	exon3	c.C1008G	p.V336V	GTGTGTCTGTGTG	.	32	3	27	0	.	11	11	0	0	0
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38313744	38313744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MICALL1-153	NM_033386	exon4	c.C368T	p.A123V	GCCTTGCACCCTG	.	117	28	110	0	.	22	13	9	0	0
SCAP	22937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	47455522	47455522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SCAP-91	NM_012235	exon23	c.G3662T	p.C1221F	GAGACACAGCCCT	.	163	68	127	1	.	205	79	125	1	0
PLXNB1	5364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48459373	48459373	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PLXNB1-293	NM_001130082	exon16	c.G3321T	p.T1107T	AGCCACCGTGACC	.	94	20	87	0	.	131	87	44	0	0
NDUFAF3	25915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	49059877	49059877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NDUFAF3-90	NM_199069	exon2	c.A176T	p.Y59F	CAATGTACATCGA	.	106	23	66	0	.	422	295	125	2	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52432935	52432935	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	DNAH1-67	NM_015512	exon76	c.A12159G	p.V4053V	GCTGGTAGTGATG	.	49	11	36	0	.	7	5	2	0	0
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186383957	186383957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	HRG-91	NM_000412	exon1	c.A137T	p.Y46F	ATGGCTACCTTTT	.	183	76	162	1	.	0	0	0	0	0
FTMT	94033	broad.mit.edu;bcgsc.ca	37	5	121187826	121187826	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	FTMT-91	NM_177478	exon1	c.G168T	p.R56R	CTCCCGGGACCCT	.	21	6	20	0	.	0	0	0	0	0
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101296249	101296249	+	Silent	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ASCC3-96	NM_006828	exon4	c.A576T	p.I192I	TAGGCTTATAGTT	.	70	16	67	0	.	0	0	0	0	0
SPDYE6	729597	broad.mit.edu	37	7	101988946	101988946	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	SPDYE6-1	NM_001146210	exon6	c.C927T	p.L309L	CTTACGGAGCAAG	.	1717	106	1566	1	.	47	46	1	0	0
KIAA1549	57670	hgsc.bcm.edu	37	7	138546145	138546145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	KIAA1549-369	NM_020910	exon16	c.T4987C	p.Y1663H	CTGGATACCTCCC	.	53	3	39	0	.	32	31	0	0	1
TTI2	80185	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	33369560	33369560	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_001265581	exon2	c.T572A	p.F191Y	TGTAGGAATCCTG	.	363	95	353	0	.	5	2	3	0	0
TERF1	7013	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	73921183	73921183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TERF1-228	NM_017489	exon1	c.C62T	p.A21V	GGGATGCCGACCC	.	46	9	52	0	.	8	4	4	0	0
PSCA	8000	hgsc.bcm.edu	37	8	143762846	143762846	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_005672	exon2	c.C127G	p.R43G	ACCGCGCGCATCC	.	16	6	14	0	.	0	0	0	0	0
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	35698169	35698169	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	TLN1-609	NM_006289	exon56	c.G7372C	p.A2458P	CAGCAGCCTGGGC	.	83	14	70	0	.	0	0	0	0	0
SPATA31C1	441452	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	90536638	90536638	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	.	NM_001145124	exon4	c.T1816A	p.W606R	CGATCCTGGCTTG	.	284	87	248	1	.	0	0	0	0	0
MAOA	4128	ucsc.edu	37	X	43515619	43515619	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MAOA-194	NM_000240	exon1	c.G30A	p.A10A	TATCGCGGGCCAC	.	34	4	33	0	.	19	19	0	0	0
MORC4	79710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	106201626	106201626	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	MORC4-131	NM_001085354	exon11	c.T1325C	p.I442T	GGATCAATCTTCC	.	59	32	50	0	.	10	5	5	0	0
LMO4	8543	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	87805263	87805263	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	LMO4-226	NM_006769	exon3	c.281delT	p.I94fs	.	.	58	17	54	0	.	0	0	0	0	0
AGBL2	79841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47726183	47726183	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	AGBL2-92	NM_024783	exon7	c.498delC	p.L166fs	.	.	98	24	112	0	.	0	0	0	0	0
PDGFRB	5159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	149515196	149515213	+	In_Frame_Del	DEL	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	CCGTGTCTAGCCCAGTGA	CCGTGTCTAGCCCAGTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	PDGFRB-1499	NM_002609	exon3	c.269_286del	p.90_96del	.	.	116	22	131	0	.	0	0	0	0	0
NOM1	64434	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156752614	156752614	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	NOM1-90	NM_138400	exon4	c.1378delA	p.K460fs	.	.	61	16	58	0	.	0	0	0	0	0
ZNF407	55628	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	18	72344119	72344120	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-BQ-7062-01A-11D-1961-08	TCGA-BQ-7062-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	8017a612-f39d-4ab8-bd99-55f6568c4bd8	46dc5965-f675-4a6a-8374-017cd8873bb9	.	ZNF407-92	NM_001146190	exon1	c.1144_1145insTA	p.L382fs	.	.	94	26	75	0	.	0	0	0	0	0
