Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
CROCC	9696	broad.mit.edu	37	1	17272075	17272075	+	Missense_Mutation	SNP	G	G	A	rs2781608		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CROCC-137	NM_014675	exon15	c.G2110A	p.A704T	GAGAAGGCCGAGG	.	30	4	54	0	G|0.935;A|0.065	27	13	14	0	0
CR1L	1379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	207818592	207818592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CR1L-46	NM_175710	exon1	c.T14G	p.V5G	CTCCCGTCCGTCT	.	117	59	172	0	.	0	0	0	0	0
ATF3	467	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	212791490	212791490	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ATF3-658	NM_001674	exon3	c.A262G	p.R88G	GATGAAAGGAAAA	.	90	47	128	1	.	7	5	2	0	0
C1orf35	79169	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228290925	228290925	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	C1orf35-90	NM_024319	exon1	c.T4G	p.F2V	AGCCGAACATGGC	.	48	28	62	0	.	17	7	10	0	0
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	16943441	16943441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CUBN-166	NM_001081	exon52	c.A8080G	p.I2694V	CACCTATCTGTAT	.	92	53	88	0	.	1	1	0	0	0
NRG3	10718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	83635770	83635770	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NRG3-522	NM_001165972	exon1	c.C674A	p.P225H	CCTGGCCTACTGC	.	58	28	77	0	.	7	3	4	0	0
LIPJ	142910	bcgsc.ca	37	10	90362367	90362367	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	LIPJ-91	NM_001010939	exon9	c.C758A	p.A253E	ACCCAGCAGGAAC	.	61	5	55	0	.	0	0	0	0	0
EPS8L2	64787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	723296	723296	+	Nonsense_Mutation	SNP	C	C	A	rs142895363	alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	EPS8L2-91	NM_022772	exon15	c.C1397A	p.S466X	CCACTTCAGAGCC	.	134	59	184	0	C|0.999;T|0.001	75	50	25	0	0
SCUBE2	57758	hgsc.bcm.edu	37	11	9113002	9113002	+	Missense_Mutation	SNP	A	A	G	rs60494098		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SCUBE2-92	NM_001170690	exon1	c.T74C	p.L25P	AGCAGCAGTGGCG	.	4	3	4	1	A|0.699;G|0.301	0	0	0	0	0
TRIM51	84767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55658774	55658774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	NM_032681	exon7	c.A1025G	p.Y342C	AATATTATTGGGA	.	125	56	80	0	.	0	0	0	0	0
B3GNT1	11041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66114291	66114291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	B3GNT1-90	NM_006876	exon1	c.A726T	p.E242D	CAGCATTTCCCGC	.	169	82	240	0	.	66	33	33	0	0
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	85722090	85722090	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PICALM-659	NM_007166	exon7	c.T748C	p.F250L	TGAGGAACTCTGA	.	30	18	18	0	.	149	75	74	0	0
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	92590392	92590392	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	FAT3-73	NM_001008781	exon19	c.C11378T	p.P3793L	TGTGTCCGGGGTC	.	113	51	168	0	.	0	0	0	0	0
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27787953	27787953	+	Silent	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PPFIBP1-228	NM_003622	exon4	c.T175C	p.L59L	GGATTGTTAGAGA	.	103	46	112	0	.	19	12	7	0	0
ARF3	377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49333834	49333834	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ARF3-227	NM_001659	exon3	c.G205C	p.G69R	GGCCACCCACATC	.	101	41	182	0	.	281	144	137	0	0
MBD6	114785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57920964	57920964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MBD6-516	NM_052897	exon7	c.C2036T	p.A679V	ATTCTGCGCTGCT	.	18	13	35	0	.	34	13	21	0	0
HCFC2	29915	bcgsc.ca	37	12	104473281	104473281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HCFC2-92	NM_013320	exon4	c.A532G	p.S178G	GGTTGGAGCATTC	.	99	4	99	1	.	1	1	0	0	0
BTBD11	121551	bcgsc.ca	37	12	108011117	108011117	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	BTBD11-93	NM_001018072	exon9	c.C2135T	p.A712V	GTGGTGCCGATCC	.	157	6	239	0	.	1	1	0	0	0
MED13L	23389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	116429670	116429670	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MED13L-232	NM_015335	exon17	c.C3089G	p.A1030G	TTGCTGGCTGGGG	.	77	35	79	0	.	17	8	9	0	0
ZMYM2	7750	hgsc.bcm.edu	37	13	20601376	20601376	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ZMYM2-685	NM_001190964	exon10	c.A1769G	p.N590S	AGCGAAACTCTTT	.	16	2	10	0	.	25	25	0	0	0
STARD13	90627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	33700266	33700266	+	Missense_Mutation	SNP	T	T	G	rs143789881	byfrequency;alternate_allele	TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	STARD13-94	NM_178006	exon7	c.A2034C	p.Q678H	AATACTTTGAGGC	.	185	91	210	0	T|1.000;C|0.000	3	2	1	0	0
SLC38A6	145389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61449295	61449295	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SLC38A6-92	NM_153811	exon2	c.A175C	p.M59L	GCCATCATGGGAA	.	102	48	110	0	.	9	5	4	0	0
TJP1	7082	bcgsc.ca	37	15	30033565	30033565	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TJP1-95	NM_175610	exon10	c.C1226T	p.P409L	GAATTAGGTAGGA	.	69	5	93	0	.	14	14	0	0	0
WWP2	11060	bcgsc.ca	37	16	69971116	69971116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	WWP2-658	NM_001270454	exon20	c.G2213A	p.R738H	GGCTGCGCTACTT	.	97	6	104	0	.	44	44	0	0	0
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84228944	84228944	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ADAD2-68	NM_139174	exon6	c.T1022A	p.L341Q	ACAAGCTGGTGGC	.	28	11	59	0	.	0	0	0	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	503	62	410	56	.	75	12	63	0	0
SREBF1	6720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	17721579	17721579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SREBF1-91	NM_001005291	exon7	c.A1268G	p.K423R	CTGCTTTTGTGGA	.	102	27	124	0	.	0	0	0	0	0
KRTAP2-1	81872	broad.mit.edu	37	17	39203187	39203187	+	Silent	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	NM_001123387	exon1	c.C333T	p.P111P	GCAGGGGGGCCGG	.	13	3	12	0	.	0	0	0	0	0
CYP2A6	1548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41352945	41352945	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CYP2A6-92	NM_000762	exon5	c.G666A	p.M222I	AGAGAACATCTCA	.	110	25	168	0	.	0	0	0	0	0
CYP2A7	1549	hgsc.bcm.edu;broad.mit.edu	37	19	41384830	41384830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	CYP2A7-93	NM_000764	exon5	c.G666A	p.M222I	AGAGAACATCTCA	.	65	9	82	0	.	0	0	0	0	0
DMPK	1760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46281110	46281110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DMPK-546	NM_001081563	exon6	c.G727A	p.G243S	GGGTGCCCACAGC	.	98	43	166	0	.	19	9	10	0	0
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55494859	55494859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NLRP2-120	NM_017852	exon6	c.C1793T	p.T598M	ATTCAACGGTGAC	.	84	39	95	0	.	0	0	0	0	0
ALMS1	7840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	73827935	73827935	+	Silent	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ALMS1-142	NM_015120	exon18	c.T11796C	p.R3932R	AAAACGTGAAGAG	.	51	28	76	0	.	44	20	24	0	0
SPAG16	79582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	214161997	214161997	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SPAG16-188	NM_024532	exon3	c.C195G	p.D65E	AGATGACAATTTT	.	99	36	61	0	.	0	0	0	0	0
SNX5	27131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	17933351	17933351	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SNX5-289	NM_014426	exon5	c.G393C	p.E131D	GAGATACTCACTG	.	33	15	37	0	.	0	0	0	0	0
MIR658	724028	bcgsc.ca	37	22	38240305	38240305	+	RNA	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	.	.	.	.	CGGACCTACTTCC	.	26	8	49	0	.	1	1	0	0	0
PDZRN3	23024	hgsc.bcm.edu	37	3	73673578	73673578	+	Silent	SNP	G	G	C	rs6763344		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PDZRN3-232	NM_015009	exon1	c.C399G	p.A133A	GTCGCAGGCGTCG	.	2	2	0	0	G|0.119;C|0.881	0	0	0	0	0
XRN1	54464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	142141567	142141567	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	XRN1-93	NM_001042604	exon8	c.T824A	p.I275N	CTTTCAATATCAT	.	66	28	88	0	.	4	2	2	0	0
SLBP	7884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1701385	1701385	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SLBP-90	NM_006527	exon5	c.G385C	p.E129Q	CTGTCTCAAAGTC	.	114	56	138	0	.	56	23	33	0	0
BOD1L1	259282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	13604361	13604361	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	.	NM_148894	exon10	c.G4163A	p.S1388N	AACTTACTTCCAA	.	125	63	127	0	.	7	3	4	0	0
GRIA1	2890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	153078528	153078528	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	GRIA1-96	NM_001258021	exon10	c.C1377G	p.H459Q	CAAGCACGTGGGC	.	74	33	104	0	.	0	0	0	0	0
PTK7	5754	hgsc.bcm.edu;bcgsc.ca	37	6	43044271	43044271	+	Silent	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	PTK7-1493	NM_152882	exon1	c.T45G	p.P15P	GTTGCCTCTGCTC	.	25	18	34	0	.	7	4	3	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824953	20824953	+	Silent	SNP	G	G	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SP8-91	NM_182700	exon2	c.C483G	p.G161G	GCCGCCGCCCCCG	.	14	5	9	2	.	0	0	0	0	0
SP8	221833	hgsc.bcm.edu	37	7	20824956	20824956	+	Silent	SNP	C	C	G	rs201180283		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SP8-91	NM_182700	exon2	c.G480C	p.G160G	GCCGCCCCCGCCG	.	12	4	9	0	.	10	0	8	2	0
HNRNPA2B1	3181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	26235509	26235509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HNRNPA2B1-70	NM_031243	exon8	c.G715A	p.G239R	CAAATCCACGTCC	.	74	33	99	0	.	822	405	417	0	0
MGAM	8972	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	141731533	141731533	+	Silent	SNP	T	T	G	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	MGAM-70	NM_004668	exon13	c.T1524G	p.V508V	TGCTGTTTGGTGG	.	149	70	109	0	.	0	0	0	0	0
TAS2R41	259287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	143175477	143175477	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TAS2R41-92	NM_176883	exon1	c.A512T	p.K171M	CCTACAAGTGGAA	.	50	20	76	0	.	0	0	0	0	0
DENND4C	55667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	19316719	19316719	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DENND4C-92	NM_017925	exon12	c.A1689T	p.Q563H	AATTCAAGAGGCA	.	212	95	237	0	.	1	0	1	0	0
DENND1A	57706	hgsc.bcm.edu;bcgsc.ca	37	9	126214605	126214605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	DENND1A-92	NM_024820	exon17	c.A1249G	p.N417D	CAGTATTCAGAAT	.	79	5	112	0	.	17	17	0	0	0
NUDT10	170685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	51075840	51075840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NUDT10-90	NM_153183	exon2	c.C23T	p.T8I	ACCAGACACGGAC	.	68	12	94	0	.	0	0	0	0	0
NUDT11	55190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	51239274	51239274	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	NUDT11-130	NM_018159	exon1	c.C23T	p.T8M	GTCCGCGTCTGGT	.	26	12	41	0	.	0	0	0	0	0
RGAG4	340526	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	71351213	71351213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	RGAG4-132	NM_001024455	exon1	c.A178G	p.I60V	GCACTATGGGTAC	.	118	53	190	0	.	7	7	0	0	0
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	103400626	103400626	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	COL11A1-586	NM_080629	exon45	c.3518delC	p.P1173fs	.	.	48	18	43	0	.	0	0	0	0	0
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	24802526	24802526	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TNRC6A-92	NM_014494	exon6	c.2563delG	p.D855fs	.	.	67	28	73	0	.	0	0	0	0	0
TMEM131	23505	broad.mit.edu	37	2	98427639	98427639	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	TMEM131-74	NM_015348	exon18	c.1920delA	p.K640fs	CTCTAATTTTTTT	.	304	7	262	0	.	0	0	0	0	0
WFDC10A	140832	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	44258534	44258534	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	WFDC10A-90	NM_080753	exon1	c.82delA	p.R28fs	.	.	49	20	53	0	.	0	0	0	0	0
ATP11B	23200	bcgsc.ca	37	3	182597406	182597429	+	In_Frame_Del	DEL	GCTGTCGTATGGCTCCACTGCAGA	GCTGTCGTATGGCTCCACTGCAGA	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	GCTGTCGTATGGCTCCACTGCAGA	GCTGTCGTATGGCTCCACTGCAGA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	ATP11B-93	NM_014616	exon20	c.2375_2398del	p.792_800del	TATTATGCTGTCG	.	51	5	93	0	.	0	0	0	0	0
SAMD9	54809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	92734994	92734994	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	SAMD9-140	NM_001193307	exon2	c.417delA	p.K139fs	.	.	113	50	102	0	.	0	0	0	0	0
LRRC14	9684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	145746824	145746825	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	LRRC14-90	NM_001272036	exon5	c.1444_1445del	p.482_482del	.	.	47	23	88	0	.	0	0	0	0	0
HOMER2	9455	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	83518619	83518620	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	.	HOMER2-67	NM_199330	exon9	c.913_914insA	p.V305fs	.	.	112	53	152	0	.	0	0	0	0	0
ERBB2	2064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	37880219	37880220	+	Missense_Mutation	DNP	TT	TT	CC	novel		TCGA-DW-7839-01A-11D-2136-08	TCGA-DW-7839-10A-01D-2136-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d305b7d5-cbb1-41bf-8b2b-1cc2ba653c20	59a27c03-2a9d-4978-81e0-94d09e0e5d43	ERBB2,NS,carcinoma,0	ERBB2		exon19	c.T2264C	p.L755P	AAGTGTTGAGGGA	.	71.0	45.0	88.0	0.0	.	0	0	0	0	0
