Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FAM132A	388581	ucsc.edu	37	1	1179654	1179654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM132A-68	NM_001014980	exon3	c.G296T	p.R99L	AGATCCCGCTGGG	.	20	4	76	0	.	0	0	0	0	0
XKR8	55113	ucsc.edu	37	1	28290011	28290011	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	XKR8-90	NM_018053	exon2	c.C297T	p.C99C	TAGGTGCGTGCAG	.	38	4	86	0	.	0	0	0	0	0
ZSCAN20	7579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	33960785	33960785	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZSCAN20-93	NM_145238	exon8	c.C2841T	p.I947I	GCTCATCACACAC	.	39	36	108	0	.	0	0	0	0	0
EIF2D	1939	ucsc.edu	37	1	206785684	206785684	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	EIF2D-92	NM_006893	exon1	c.G12A	p.K4K	AAAGGCCTTGGCA	.	41	4	127	0	.	15	15	0	0	0
FAM71A	149647	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	212799448	212799448	+	Missense_Mutation	SNP	G	G	T	rs149566937	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM71A-94	NM_153606	exon1	c.G1229T	p.R410M	ATGGAAGGGAGCG	.	30	23	82	0	.	0	0	0	0	0
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229770859	229770859	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	URB2-174	NM_014777	exon4	c.G499C	p.A167P	GTGGTAGCCCAGT	.	25	20	104	1	.	0	0	0	0	0
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229770863	229770863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	URB2-174	NM_014777	exon4	c.A503G	p.Q168R	TAGCCCAGTTGTT	.	26	21	105	0	.	0	0	0	0	0
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	13222572	13222572	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	MCM10-653	NM_182751	exon7	c.A898C	p.I300L	GGGGTTATATTGA	.	192	88	182	0	.	0	0	0	0	0
PCBD1	5092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72643783	72643783	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PCBD1-90	NM_000281	exon4	c.A239G	p.H80R	CACTCATGGGTGC	.	61	20	62	0	.	211	87	124	0	0
ADAM8	101	ucsc.edu	37	10	135080899	135080899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ADAM8-90	NM_001109	exon21	c.C2276T	p.P759L	AAGGGTGGGCTGG	.	37	4	48	0	.	3	3	0	0	0
OR4C13	283092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	49974076	49974076	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	OR4C13-72	NM_001001955	exon1	c.C102A	p.I34I	CTACATCAACGCC	.	307	35	299	0	.	0	0	0	0	0
NUMA1	4926	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	71723991	71723991	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NUMA1-633	NM_006185	exon15	c.C4558A	p.L1520M	CCTCCAGGACCTT	.	60	22	130	0	.	152	81	70	0	1
HEBP1	50865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	13140120	13140120	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HEBP1-135	NM_015987	exon3	c.A364G	p.I122V	CCTCAATCTTAAC	.	187	75	211	0	.	88	42	46	0	0
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27809595	27809595	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PPFIBP1-228	NM_177444	exon10	c.A836C	p.E279A	AATCTGAAGTAAA	.	176	79	113	0	.	51	31	20	0	0
GPD1	2819	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	50503242	50503242	+	Nonsense_Mutation	SNP	C	C	G	rs116736822	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPD1-90	NM_005276	exon8	c.C990G	p.Y330X	GTGCTACGAGGGC	.	87	26	135	0	C|0.998;T|0.002	1	0	1	0	0
LRIG3	121227	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	59271290	59271290	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	LRIG3-229	NM_153377	exon15	c.G2428T	p.V810F	TCACGACACCCAC	.	61	39	98	0	.	11	4	7	0	0
ANKRD13A	88455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	110457067	110457067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ANKRD13A-90	NM_033121	exon6	c.T668C	p.V223A	GGGAAGTTGAGCG	.	92	39	114	0	.	38	18	20	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33095588	33095588	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	N4BP2L2-68	NM_033111	exon6	c.187-2A>G	.	ATGGCCTACACAA	.	122	4	101	0	.	5	5	0	0	0
FREM2	341640	broad.mit.edu	37	13	39422803	39422803	+	Silent	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FREM2-100	NM_207361	exon8	c.C6375G	p.S2125S	TGTCTCCGATTGT	.	73	3	65	0	.	0	0	0	0	0
SIX4	51804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	61190290	61190290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SIX4-154	NM_017420	exon1	c.T503G	p.I168S	TCGAGGATGCTGT	.	20	9	26	0	.	3	1	2	0	0
C15orf53	400359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	38988925	38988925	+	Silent	SNP	G	G	C	rs146995135	byfrequency;alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C15orf53-492	NM_207444	exon1	c.G117C	p.A39A	CCAGGCGTCTGTT	.	86	32	145	1	G|0.998;T|0.002	0	0	0	0	0
DTWD1	56986	broad.mit.edu	37	15	49926740	49926740	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DTWD1-226	NM_001144955	exon4	c.T416G	p.L139R	TTGCACTCATTTT	.	175	6	97	0	.	0	0	0	0	0
C16orf59	80178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2511752	2511752	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C16orf59-90	NM_025108	exon5	c.C610T	p.L204L	AGGCACCTGCTGC	.	113	29	137	1	.	0	0	0	0	0
CES3	23491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67000741	67000741	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CES3-517	NM_024922	exon8	c.C1035A	p.N345K	CAACAACCATGAG	.	223	85	248	0	.	1	0	1	0	0
FAM65A	79567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67576026	67576026	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAM65A-92	NM_001193523	exon13	c.G1397A	p.R466Q	ACAGTCGGACTCT	.	155	35	139	0	.	102	73	29	0	0
CHMP1A	5119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89717999	89717999	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_002768	exon3	c.C83G	p.A28G	TGCTCCGCCTTGG	.	75	43	89	0	.	144	47	97	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	444	69	406	57	.	29	6	23	0	0
SLC47A2	146802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19610045	19610045	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SLC47A2-90	NM_152908	exon9	c.G865C	p.G289R	AGGGGCCCCAGTC	.	65	32	123	1	.	3	2	1	0	0
ZNF207	7756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	30696350	30696350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF207-90	NM_001098507	exon11	c.A1201T	p.N401Y	CAACGTAATCTTC	.	96	48	117	0	.	86	44	42	0	0
MPO	4353	ucsc.edu	37	17	56355333	56355333	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	MPO-156	NM_000250	exon7	c.G1059A	p.L353L	GTTGCGCAGGTTC	.	43	4	93	0	.	0	0	0	0	0
PPM1D	8493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	58740837	58740837	+	Missense_Mutation	SNP	G	G	A	rs200809297		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PPM1D-227	NM_003620	exon6	c.G1742A	p.R581Q	CCATGCGACGCAG	.	104	52	109	0	G|0.999;A|0.001	15	9	6	0	0
SMAD7	4092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	46447887	46447887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SMAD7-414	NM_005904	exon4	c.G1136A	p.R379Q	TTGGGCCGCTGCA	.	66	25	91	0	.	38	24	14	0	0
GATAD2A	54815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	19613195	19613195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GATAD2A-90	NM_017660	exon11	c.C1631T	p.T544M	TGCACACGTTCAG	.	93	36	182	0	.	46	23	23	0	0
ZNF30	90075	broad.mit.edu	37	19	35435141	35435141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF30-24	NM_001099438	exon5	c.G1274C	p.G425A	ATACTGGGGAGAA	.	35	3	63	0	.	5	5	0	0	0
PRR12	57479	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50097991	50097991	+	Silent	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PRR12-70	NM_020719	exon4	c.G399C	p.S133S	CATCTCGGGTGCC	.	30	15	72	0	.	43	25	18	0	0
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	17955658	17955658	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GEN1-359	NM_182625	exon11	c.C1192T	p.Q398X	CAACTACAGCCAA	.	221	106	171	1	.	0	0	0	0	0
GPR113	165082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	26532908	26532908	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPR113-94	NM_001145168	exon13	c.G3144T	p.V1048V	GCAACTCACCAGG	.	124	56	139	1	.	0	0	0	0	0
GFPT1	2673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	69553334	69553334	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GFPT1-91	NM_001244710	exon20	c.T2087A	p.V696E	ACAGTCACAGATT	.	60	22	46	0	.	35	25	10	0	0
NCKAP5	344148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	133541732	133541732	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_207363	exon14	c.G2652C	p.W884C	CTGGACCCAGTCC	.	85	52	174	0	.	0	0	0	0	0
TANC1	85461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	160084382	160084382	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TANC1-92	NM_033394	exon25	c.T3956G	p.F1319C	GAAAGTTTCCTCG	.	83	41	89	1	.	24	20	4	0	0
ITM2C	81618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	231741583	231741583	+	Silent	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ITM2C-90	NM_030926	exon4	c.G462C	p.A154A	GACTGCGTACCAT	.	107	50	169	0	.	1	0	1	0	0
DSN1	79980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35399580	35399580	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DSN1-92	NM_001145315	exon3	c.G51T	p.M17I	CTTAGACATCACT	.	314	100	231	1	.	11	6	5	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30051666	30051666	+	Splice_Site	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NF2-4696	NM_016418	exon6	c.599+1G>A	.	AGCCAGGTGAGGC	.	42	37	91	0	.	0	0	0	0	0
CCR2	729230	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46399085	46399085	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CCR2-568	NM_001123041	exon2	c.T67A	p.F23I	ACCACCTTTTTTG	.	280	136	280	1	.	1	1	0	0	0
SLC26A6	65010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48668741	48668741	+	Splice_Site	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SLC26A6-946	NM_001040454	exon8	c.841-2A>G	.	ATGAGCTGTGGGA	.	13	8	24	0	.	1	0	1	0	0
GPX1	2876	ucsc.edu	37	3	49394910	49394910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	GPX1-68	.	.	.	.	GTAGGGGCACACC	.	45	4	107	0	.	645	644	1	0	0
ZMYND10	51364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50379017	50379017	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZMYND10-279	NM_015896	exon11	c.G1235A	p.W412X	CAATACCACTCAT	.	78	30	126	0	.	0	0	0	0	0
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	56658883	56658883	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_001112736	exon22	c.C4291G	p.Q1431E	GTTGCTGTATGTT	.	147	58	121	0	.	28	14	14	0	0
ACOX2	8309	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	58517532	58517532	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ACOX2-90	NM_003500	exon6	c.G591T	p.R197R	GGCTGACCGTCCC	.	34	18	79	0	.	0	0	0	0	0
ZBTB11	27107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101370105	101370105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZBTB11-91	NM_014415	exon11	c.G3067A	p.V1023I	CTAATACATAATT	.	168	70	181	0	.	15	6	9	0	0
KIAA2018	205717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	113376409	113376409	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KIAA2018-93	NM_001009899	exon7	c.A4120G	p.M1374V	TGACCATCATTTG	.	96	38	112	0	.	2	2	0	0	0
FSTL1	11167	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120122159	120122159	+	Silent	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FSTL1-90	NM_007085	exon8	c.T624C	p.N208N	ATCAGCATTTTCA	.	156	65	132	0	.	181	91	90	0	0
ETV5	2119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	185766603	185766603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ETV5-706	NM_004454	exon13	c.C1358T	p.A453V	AAGAGGGCATCTG	.	43	25	73	0	.	8	7	1	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187539870	187539870	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FAT1-34	NM_005245	exon10	c.G7870T	p.D2624Y	CCTCATCGGCATC	.	84	37	79	0	.	75	30	45	0	0
CLPTM1L	81037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	1335258	1335258	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	CLPTM1L-153	NM_030782	exon6	c.T710C	p.L237P	ACGGTGAGGGGCA	.	88	32	197	1	.	84	46	38	0	0
HLA-G	3135	ucsc.edu	37	6	29797394	29797394	+	Silent	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HLA-G-517	NM_002127	exon5	c.G819A	p.V273V	GGTGGTGCCTTCT	.	61	1	191	0	.	3352	379	2943	21	6
AKAP12	9590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	151626981	151626981	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	AKAP12-293	NM_005100	exon3	c.C262G	p.L88V	GGAGCCCTGAACG	.	34	13	48	0	.	21	12	9	0	0
PGAM2	5224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44105125	44105125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PGAM2-226	NM_000290	exon1	c.G4T	p.A2S	GAGTGGCCATGGT	.	107	38	136	0	.	2	2	0	0	0
TMED4	222068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	44621125	44621125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TMED4-90	NM_182547	exon3	c.T310C	p.S104P	TGTGGGAGGTGAA	.	76	41	85	0	.	144	79	65	0	0
ADAM28	10863	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	24209520	24209520	+	Silent	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ADAM28-228	NM_014265	exon21	c.T2199C	p.H733H	GCCCCATGTGTAT	.	135	56	116	0	.	3	2	1	0	0
BNIP3L	665	hgsc.bcm.edu	37	8	26240664	26240664	+	Silent	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	BNIP3L-227	NM_004331	exon1	c.C18G	p.V6V	CCTAGTCGAGCCG	.	37	2	66	0	.	51	51	0	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37729419	37729419	+	Silent	SNP	C	C	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	RAB11FIP1-92	NM_001002814	exon4	c.G2901T	p.S967S	ATCATCCGATGCG	.	176	7	164	0	.	4	4	0	0	0
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56435874	56435874	+	Silent	SNP	C	C	G	rs4263738	alternate_allele	TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	XKR4-92	NM_052898	exon3	c.C1041G	p.A347A	CCTGGCCTGGGCC	.	39	19	78	0	.	13	5	8	0	0
HNF4G	3174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	76465335	76465335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	HNF4G-187	NM_004133	exon5	c.T518C	p.I173T	CAAGTATTGGTGA	.	120	58	83	0	.	20	13	7	0	0
PTK2	5747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	141745382	141745382	+	Silent	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PTK2-1517	NM_005607	exon22	c.G2064A	p.R688R	CCTGGGCCGCCTG	.	29	15	41	0	.	56	25	30	0	1
C9orf123	90871	broad.mit.edu	37	9	7799724	7799724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	C9orf123-90	NM_033428	exon1	c.G11C	p.R4P	GACAACCGAGACC	.	35	4	53	0	.	84	84	0	0	0
SEC61B	10952	bcgsc.ca	37	9	101992685	101992685	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	SEC61B-90	NM_006808	exon4	c.G270T	p.W90C	CATTTGGGGCAAG	.	255	14	216	0	.	71	71	0	0	0
TBC1D13	54662	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131565636	131565636	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	TBC1D13-90	NM_018201	exon8	c.C651G	p.I217M	GTTCATCTACGCC	.	65	34	109	0	.	30	16	14	0	0
NXF3	56000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	102337711	102337711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	NXF3-205	NM_022052	exon8	c.G757A	p.V253I	CATGGACGTCCAG	.	91	87	155	1	.	0	0	0	0	0
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	117731503	117731503	+	Silent	SNP	A	A	T	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	DOCK11-93	NM_144658	exon21	c.A2373T	p.A791A	TGATGCAGAATCA	.	91	87	90	0	.	0	0	0	0	0
KIAA1210	57481	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	118223094	118223094	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KIAA1210-67	NM_020721	exon11	c.T2099C	p.I700T	AACTGGATATGAG	.	58	50	57	0	.	0	0	0	0	0
PLXNA3	55558	ucsc.edu	37	X	153696321	153696321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PLXNA3-132	NM_017514	exon21	c.G3797A	p.R1266H	AGTCCCGTGTGGC	.	33	4	75	0	.	11	11	0	0	0
KRT76	51350	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	53170736	53170736	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	KRT76-154	NM_015848	exon1	c.340delA	p.S114fs	.	.	54	24	72	0	.	0	0	0	0	0
GABRG3	2567	hgsc.bcm.edu	37	15	27777872	27777876	+	Frame_Shift_Del	DEL	TTCTT	TTCTT	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	TTCTT	TTCTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	.	NM_033223	exon10	c.1249_1253del	p.417_418del	.	.	42	14	63	0	.	0	0	0	0	0
PSME4	23198	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	54147352	54147352	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PSME4-275	NM_014614	exon19	c.2398delG	p.D800fs	.	.	468	189	456	0	.	0	0	0	0	0
COL6A6	131873	hgsc.bcm.edu;bcgsc.ca	37	3	130311918	130311918	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	COL6A6-76	NM_001102608	exon15	c.4385delA	p.E1462fs	.	.	395	66	413	0	.	0	0	0	0	0
RGS7BP	401190	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	63905047	63905047	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	RGS7BP-68	NM_001029875	exon6	c.742delT	p.F248fs	.	.	101	38	121	0	.	0	0	0	0	0
FBXL21	26223	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	135276238	135276238	+	Targeted_Region	DEL	A	A	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	FBXL21-226	.	.	.	.	.	.	62	19	40	0	.	0	0	0	0	0
PLEKHG1	57480	hgsc.bcm.edu;broad.mit.edu	37	6	151152656	151152656	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	PLEKHG1-92	NM_001029884	exon16	c.2409delT	p.T803fs	.	.	127	60	158	0	.	0	0	0	0	0
OPLAH	26873	broad.mit.edu	37	8	145113801	145113801	+	Splice_Site	DEL	T	T	-	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	OPLAH-68	NM_017570	exon6	c.464-2A>-	.	GCGGCCTTCCAGA	.	6	2	14	0	.	0	0	0	0	0
BHMT	635	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	78426827	78426828	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	BHMT-91	NM_001713	exon8	c.1109_1110insA	p.P370fs	.	.	276	105	276	0	.	0	0	0	0	0
IREB2	3658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	78765688	78765689	+	Missense_Mutation	DNP	GT	GT	AC	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	IREB2		exon8	c.T989C	p.V330T	CTTTTGTTACATC	.	108.0	49.0	116.0	1.0	.	0	0	0	0	0
ZNF573	126231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	38230139	38230140	+	Nonsense_Mutation	DNP	CC	CC	AA	novel		TCGA-G7-6797-01A-11D-1961-08	TCGA-G7-6797-10A-01D-1962-08	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b1bd2e14-32b6-4c57-bad1-59c0591876c2	5df531ff-b58f-4f9b-8103-b154da29a87c	.	ZNF573		exon5	c.G1251T	p.KE359N*	GCATTCCTTGCAT	.	296.0	132.0	274.0	0.0	.	0	0	0	0	0
