Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
CHST3	9469	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	10	73767938	73767938	+	Silent	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
AMPD2	271	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	1	110168780	110168780	+	Splice_Site	SNP	A	A	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RCN1	5954	broad.mit.edu;hgsc.bcm.edu	37	11	32118784	32118784	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CHRDL2	25884	broad.mit.edu;hgsc.bcm.edu	37	11	74408313	74408316	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	CTTT	CTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CHIT1	1118	hgsc.bcm.edu;ucsc.edu	37	1	203188924	203188924	+	Silent	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RD3	343035	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	1	211654675	211654675	+	Missense_Mutation	SNP	G	G	A	rs61740157	bycluster;byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
LRRC43	254050	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	12	122672370	122672370	+	Silent	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ADCY4	196883	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	14	24793320	24793320	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RNF111	54778	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	15	59368246	59368246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
C17orf53	78995	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	17	42225428	42225428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
LAMA1	284217	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	18	6978199	6978199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
IL18RAP	8807	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	103068475	103068475	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
HSPD1	3329	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	2	198358117	198358117	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
NYAP2	57624	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	226273811	226273811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
UGT8	7368	hgsc.bcm.edu;ucsc.edu	37	4	115544546	115544546	+	Silent	SNP	T	T	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
DROSHA	29102	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	5	31521319	31521319	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CUL7	9820	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	43020113	43020113	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
PAX4	5078	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	7	127255519	127255519	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SSPO	23145	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	7	149486388	149486388	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MAL2	114569	hgsc.bcm.edu	37	8	120220776	120220776	+	Frame_Shift_Del	DEL	G	G	-	rs142782873	by1000genomes	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TIGD5	84948	broad.mit.edu;hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	8	144680424	144680424	+	Silent	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
DMD	1756	broad.mit.edu;hgsc.bcm.edu	37	X	31198540	31198550	+	Frame_Shift_Del	DEL	GACCAGAAAAA	GACCAGAAAAA	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GACCAGAAAAA	GACCAGAAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ETNK1	55500	hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	12	22824236	22824236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
DMD	1756	broad.mit.edu;hgsc.bcm.edu;mdanderson.org;bcgsc.ca	37	X	32382805	32382805	+	Missense_Mutation	SNP	G	G	C	rs146420425		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ZNF518A	9849	broad.mit.edu	37	10	97918856	97918856	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
NLRP6	171389	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	281811	281811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CTSD	1509	broad.mit.edu;mdanderson.org;bcgsc.ca	37	11	1774767	1774767	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
FOLH1B	219595	broad.mit.edu	37	11	89420569	89420569	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
KRT77	374454	broad.mit.edu;bcgsc.ca	37	12	53084953	53084953	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
BAG5	9529	broad.mit.edu	37	14	104026528	104026528	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
INO80	54617	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41313154	41313154	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RLTPR	146206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67679167	67679167	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ALOX12B	242	broad.mit.edu	37	17	7980375	7980375	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SHD	56961	broad.mit.edu	37	19	4280193	4280193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CAPN12	147968	broad.mit.edu	37	19	39226063	39226063	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SDC1	6382	broad.mit.edu	37	2	20402642	20402642	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TRIM54	57159	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	2	27527838	27527838	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SAP130	79595	broad.mit.edu;bcgsc.ca	37	2	128747329	128747329	+	Missense_Mutation	SNP	C	C	A	rs199755359	alternate_allele	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SEZ6L	23544	broad.mit.edu;mdanderson.org	37	22	26736527	26736527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ROBO2	6092	broad.mit.edu;ucsc.edu;mdanderson.org;bcgsc.ca	37	3	77645803	77645803	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ZBTB11	27107	broad.mit.edu	37	3	101395694	101395694	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
COL6A5	256076	broad.mit.edu	37	3	130114173	130114173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TOPBP1	11073	broad.mit.edu	37	3	133368474	133368474	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
OCIAD1	54940	broad.mit.edu	37	4	48859372	48859372	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TKTL2	84076	broad.mit.edu;mdanderson.org;bcgsc.ca	37	4	164394497	164394497	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
NIPBL	25836	broad.mit.edu	37	5	36985238	36985238	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
DAB2	1601	broad.mit.edu	37	5	39376947	39376947	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MSH3	4437	broad.mit.edu;mdanderson.org	37	5	79968625	79968625	+	Silent	SNP	C	C	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ADGB	79747	broad.mit.edu	37	6	147105874	147105874	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ZFHX4	79776	broad.mit.edu;mdanderson.org	37	8	77763344	77763344	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MAGEB2	4113	broad.mit.edu;mdanderson.org;bcgsc.ca	37	X	30237265	30237265	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
PRG4	10216	broad.mit.edu	37	1	186276256	186276257	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
DEAF1	10522	broad.mit.edu	37	11	694933	694934	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MICALCL	84953	broad.mit.edu	37	11	12315174	12315175	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MUC4	4585	broad.mit.edu	37	3	195512280	195512281	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
FLT4	2324	broad.mit.edu	37	5	180048849	180048850	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
FGD3	89846	ucsc.edu	37	9	95792199	95792199	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
KIF11	3832	ucsc.edu	37	10	94399586	94399586	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
LYST	1130	ucsc.edu	37	1	235964396	235964396	+	Silent	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MYCBP2	23077	ucsc.edu;mdanderson.org	37	13	77799637	77799637	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
PFKFB3	5209	ucsc.edu	37	10	6261653	6261653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RING1	6015	ucsc.edu	37	6	33179664	33179664	+	Missense_Mutation	SNP	A	A	G	rs73741545		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SBNO2	22904	ucsc.edu	37	19	1132115	1132115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SPDYE4	388333	ucsc.edu	37	17	8661681	8661681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
AEBP1	165	mdanderson.org	37	7	44147485	44147485	+	Missense_Mutation	SNP	C	C	A	rs2537188	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ANKLE1	126549	mdanderson.org	37	19	17393530	17393530	+	Missense_Mutation	SNP	T	T	A	rs8108174	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
BCAP29	55973	mdanderson.org	37	7	107253813	107253813	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CELSR2	1952	mdanderson.org	37	1	109801121	109801121	+	Silent	SNP	C	C	T	rs684138	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CHIA	27159	mdanderson.org;bcgsc.ca	37	1	111863044	111863044	+	Missense_Mutation	SNP	G	G	A	rs142653250	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CNTNAP3B	728577	mdanderson.org	37	9	43828112	43828112	+	Silent	SNP	A	A	G	rs4879137		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
EIF2B4	8890	mdanderson.org	37	2	27592316	27592316	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
FOXJ1	2302	mdanderson.org	37	17	74133974	74133974	+	Silent	SNP	C	C	T	rs894542	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
HSP90AB1	3326	mdanderson.org	37	6	44221265	44221265	+	Missense_Mutation	SNP	C	C	A	rs200104342	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
MUC4	4585	mdanderson.org	37	3	195505772	195505772	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
NAMPT	10135	mdanderson.org	37	7	105903965	105903965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
NBPF10	100132406	mdanderson.org	37	1	145299805	145299805	+	Missense_Mutation	SNP	A	A	C	rs61814629		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
PABPC1	26986	mdanderson.org	37	8	101730065	101730065	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
PI4KAP2	375133	mdanderson.org	37	22	21829555	21829555	+	RNA	SNP	T	T	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
PLEKHM1	9842	mdanderson.org	37	17	43531297	43531297	+	Missense_Mutation	SNP	G	G	A	rs2684501		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RBMXL1	494115	mdanderson.org	37	1	89448940	89448940	+	Silent	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
SLC25A45	283130	mdanderson.org;bcgsc.ca	37	11	65144406	65144406	+	Missense_Mutation	SNP	G	G	A	rs34377244		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TRIM49	57093	mdanderson.org	37	11	89537461	89537461	+	Silent	SNP	G	G	T	rs585471	bycluster;byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ZFHX4	79776	mdanderson.org;bcgsc.ca	37	8	77763346	77763346	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TPR	7175	bcgsc.ca	37	1	186283126	186283126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
RCN1	5954	bcgsc.ca	37	11	32118785	32118785	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CHRDL2	25884	bcgsc.ca	37	11	74408314	74408317	+	Frame_Shift_Del	DEL	CTTT	CTTT	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	CTTT	CTTT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
TMC5	79838	bcgsc.ca	37	16	19509242	19509242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
IMMT	10989	bcgsc.ca	37	2	86408441	86408441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ZNF133	7692	bcgsc.ca	37	20	18295937	18295951	+	In_Frame_Del	DEL	GGGAGAAGGTGCCAT	GGGAGAAGGTGCCAT	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GGGAGAAGGTGCCAT	GGGAGAAGGTGCCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
POU1F1	5449	bcgsc.ca	37	3	87311219	87311219	+	Splice_Site	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CRIPAK	285464	bcgsc.ca	37	4	1388697	1388697	+	Missense_Mutation	SNP	C	C	T	rs113316888	byfrequency	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
CD109	135228	bcgsc.ca	37	6	74468723	74468723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ND5	0	bcgsc.ca	37	MT	12631	12631	+	Missense_Mutation	SNP	T	T	C	rs41445245	alternate_allele	TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
DMD	1756	bcgsc.ca	37	X	31198541	31198551	+	Frame_Shift_Del	DEL	GACCAGAAAAA	GACCAGAAAAA	-	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	GACCAGAAAAA	GACCAGAAAAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
ND1	10625	bcgsc.ca	37	MT	3566	3567	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-KL-8343-01A-11D-2310-10	TCGA-KL-8343-11A-01D-2310-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b	34739bd6-b3be-441d-8cdb-e4233bf14080	25275f7f-a079-4c74-bec8-33b107316d1b
