Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
ZMPSTE24	10269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40724033	40724033	+	Silent	SNP	G	G	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ZMPSTE24-226	NM_005857	exon1	c.G90C	p.V30V	GACAGTGTATCTT	.	99	32	83	0	.	0	0	0	0	0
GSTM4	2948	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	110201466	110201466	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	GSTM4-44	NM_147148	exon6	c.C391A	p.L131I	GAGGAACTTCCTA	.	303	97	327	0	.	18	16	2	0	0
IGSF3	3321	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	117120184	117120184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IGSF3-92	NM_001542	exon12	c.G3395C	p.S1132T	GTGGGACCTGAAA	.	88	30	57	0	.	0	0	0	0	0
PBXIP1	57326	broad.mit.edu	37	1	154920116	154920116	+	Splice_Site	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PBXIP1-153	NM_020524	exon9	c.738+2T>G	.	ACACATACCTGCC	.	130	27	106	18	.	0	0	0	0	0
INSRR	3645	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156824054	156824054	+	Missense_Mutation	SNP	G	G	A	rs140386495		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	INSRR-1403	NM_014215	exon2	c.C127T	p.R43C	GCTGACGAAGCTC	.	59	14	57	0	G|1.000;A|0.000	0	0	0	0	0
KLHDC9	126823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	161069269	161069269	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	KLHDC9-22	NM_001007255	exon2	c.G661A	p.G221R	GTAGCTGGGCATT	.	230	70	193	0	.	39	26	13	0	0
IARS2	55699	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	220311360	220311360	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IARS2-94	NM_018060	exon17	c.A2150G	p.N717S	TGCTCAATGCTGC	.	142	11	141	0	.	7	7	0	0	0
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	229771821	229771821	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	URB2-174	NM_014777	exon4	c.G1461A	p.Q487Q	GAGGCAGCCTGTG	.	117	55	114	0	.	0	0	0	0	0
HNRNPU	3192	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	245018785	245018785	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	HNRNPU-22	NM_031844	exon12	c.T2293C	p.Y765H	TTGAGTAACTACC	.	119	45	138	0	.	110	75	35	0	0
NRP1	8829	ucsc.edu;bcgsc.ca	37	10	33543118	33543118	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NRP1-525	NM_001244973	exon6	c.C819T	p.F273F	ACATTTGAAATCT	.	46	5	73	0	.	0	0	0	0	0
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88419072	88419072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	OPN4-69	NM_001030015	exon6	c.G680A	p.G227E	CCGAGGGGTTGCT	.	77	29	56	0	.	0	0	0	0	0
KCNA4	3739	hgsc.bcm.edu;broad.mit.edu	37	11	30034138	30034138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	KCNA4-517	NM_002233	exon2	c.C88T	p.R30W	TCTCCCGCTCCCG	.	12	5	14	0	.	0	0	0	0	0
API5	8539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	43350300	43350300	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	API5-136	NM_006595	exon9	c.A984T	p.G328G	AAATGGAGAGAAT	.	234	73	244	0	.	2	2	0	0	0
NRXN2	9379	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64428553	64428553	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NRXN2-232	NM_015080	exon10	c.T1857A	p.I619I	GTCCAGAATCTCG	.	174	72	146	2	.	0	0	0	0	0
MCAM	4162	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	119185945	119185945	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MCAM-137	NM_006500	exon2	c.G96A	p.A32A	CTCAGGCGCAGGC	.	48	5	42	0	.	0	0	0	0	0
C2CD5	9847	broad.mit.edu	37	12	22646273	22646273	+	Splice_Site	SNP	T	T	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_014802	exon12	c.1148-2A>T	.	TTCATCTGAAAAA	.	39	3	21	0	.	0	0	0	0	0
GLI1	2735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57861257	57861257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	GLI1-722	NM_005269	exon9	c.C1054A	p.Q352K	AAGCACCAGAATC	.	368	92	214	0	.	0	0	0	0	0
PAWR	5074	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	80083606	80083606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PAWR-90	NM_002583	exon2	c.C419T	p.S140L	GGGCCCGAGCTCT	.	100	5	40	0	.	0	0	0	0	0
P2RX2	22953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	133197702	133197702	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	P2RX2-68	NM_170683	exon8	c.C890T	p.S297L	CCTCGTCAGGCTA	.	182	11	124	0	.	0	0	0	0	0
POU4F1	5457	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	79175599	79175599	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	POU4F1-515	NM_006237	exon2	c.G1211T	p.C404F	TGGTTGCAAAACC	.	43	12	48	0	.	0	0	0	0	0
LINC00238	440184	ucsc.edu	37	14	66965190	66965190	+	RNA	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	.	.	.	.	GAATTAGCAGGCT	.	46	4	59	0	.	0	0	0	0	0
DCAF5	8816	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	69521317	69521317	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DCAF5-91	NM_003861	exon9	c.A2086G	p.T696A	GGCTGGTTCCTGC	.	68	21	60	0	.	14	8	6	0	0
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493794	77493794	+	Silent	SNP	T	T	C	rs28718623		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IRF2BPL-90	NM_024496	exon1	c.A342G	p.Q114Q	CTGCTGTTGCTGC	.	8	4	3	0	.	4805	8	4794	1	2
IGDCC4	57722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65684246	65684246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IGDCC4-93	NM_020962	exon12	c.G2196C	p.K732N	CTTGCCCTTCCAC	.	112	40	92	0	.	0	0	0	0	0
SLC24A1	9187	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65942809	65942809	+	Silent	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_004727	exon7	c.A2322G	p.G774G	AAGTGGAGGTGAA	.	226	72	229	2	.	3	3	0	0	0
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77472613	77472613	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_024776	exon5	c.T1656A	p.T552T	TCCACTAGTAATT	.	110	35	140	0	.	0	0	0	0	0
CARHSP1	23589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	8953055	8953055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CARHSP1-90	NM_001042476	exon2	c.C131T	p.P44L	CGAGTGGGCAGTG	.	112	42	110	0	.	90	46	44	0	0
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	27374134	27374134	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IL4R-227	NM_000418	exon11	c.G1461A	p.T487T	AGAGACGCCCCTC	.	117	40	86	0	.	0	0	0	0	0
SETD1A	9739	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30970101	30970101	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SETD1A-93	NM_014712	exon2	c.T49C	p.W17R	TTCCAGTGGCGGA	.	152	46	136	0	.	0	0	0	0	0
SALL1	6299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	51171349	51171349	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SALL1-98	NM_002968	exon3	c.T3649G	p.F1217V	TCTGGAACATTTC	.	116	29	133	0	.	7	5	2	0	0
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67761787	67761787	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	RANBP10-227	NM_020850	exon12	c.C1487A	p.P496H	CGCCGAGGATGCC	.	108	32	118	0	.	0	0	0	0	0
CDK10	8558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89760632	89760632	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CDK10-508	NM_052988	exon9	c.C660T	p.I220I	CAGCATCGACATG	.	158	65	169	0	.	32	6	26	0	0
CAMTA2	23125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4877742	4877742	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CAMTA2-91	NM_001171167	exon12	c.A2023C	p.M675L	CTGCCATCCGCTT	.	193	89	153	0	.	1	0	1	0	0
SLC5A10	125206	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18880267	18880267	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SLC5A10-91	NM_001042450	exon9	c.T947A	p.I316N	TGATCATCATGCC	.	134	73	82	1	.	0	0	0	0	0
LGALS9B	284194	broad.mit.edu	37	17	20355185	20355185	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	LGALS9B-23	NM_001042685	exon9	c.C681T	p.F227F	GGTGATGAAAGGC	.	243	7	199	0	.	0	0	0	0	0
ASB16	92591	broad.mit.edu	37	17	42255640	42255640	+	Missense_Mutation	SNP	C	C	G	rs192236945	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ASB16-227	NM_080863	exon5	c.C1244G	p.A415G	ACCTGGCCCGACT	.	25	6	15	0	C|0.999;T|0.001	0	0	0	0	0
SCRN2	90507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	45916860	45916860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SCRN2-91	NM_138355	exon4	c.C506T	p.A169V	ACCCACGCCTCAG	.	220	108	170	0	.	58	17	41	0	0
NXPH3	11248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	47656051	47656051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NXPH3-70	NM_007225	exon2	c.C148T	p.R50W	CGGAAGCGGGGCC	.	169	101	72	0	.	0	0	0	0	0
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62045582	62045582	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SCN4A-93	NM_000334	exon6	c.G837A	p.K279K	CACACACTTCTGC	.	518	129	365	0	.	0	0	0	0	0
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	62045585	62045585	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SCN4A-93	NM_000334	exon6	c.G834A	p.Q278Q	ACACTTCTGCCTC	.	504	125	359	0	.	0	0	0	0	0
DENND1C	79958	hgsc.bcm.edu	37	19	6475944	6475944	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DENND1C-67	NM_024898	exon11	c.C683T	p.T228I	CACGAGGTCAGCT	.	8	6	4	0	.	0	0	0	0	0
CYP4F22	126410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15651480	15651480	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CYP4F22-92	NM_173483	exon8	c.C891T	p.A297A	TAAGGCCAAGCAG	.	102	23	98	0	.	0	0	0	0	0
NCAN	1463	broad.mit.edu	37	19	19338433	19338433	+	Silent	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	NCAN-94	NM_004386	exon8	c.A2004C	p.P668P	GGCTCCACCCTCC	.	175	27	134	9	.	0	0	0	0	0
MLL4	8085	ucsc.edu;bcgsc.ca	37	19	36210764	36210764	+	Missense_Mutation	SNP	C	C	A	rs60207923	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MLL4-697	NM_014727	exon3	c.C515A	p.T172N	CTCCTACCCCCCC	.	200	74	254	1	C|0.998;T|0.002	0	0	0	0	0
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39226166	39226166	+	Silent	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CAPN12-91	NM_144691	exon13	c.C1602A	p.I534I	TGCGCTGATCACG	.	75	26	89	0	.	6	0	6	0	0
PSG5	5673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	43689069	43689069	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PSG5-93	NM_002781	exon2	c.G295T	p.E99X	CTGTTTCTCGTCC	.	252	79	254	0	.	0	0	0	0	0
LILRB3	11025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	54721052	54721052	+	Silent	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	LILRB3-93	NM_001081450	exon13	c.C1809A	p.T603T	TCTAAGGGTCAAG	.	189	101	180	0	.	0	0	0	0	0
OSR1	130497	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	19552164	19552164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	OSR1-257	NM_145260	exon3	c.C673T	p.H225Y	TGGAGTGAATATA	.	101	9	107	0	.	0	0	0	0	0
PNO1	56902	broad.mit.edu	37	2	68385203	68385203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PNO1-68	NM_020143	exon1	c.G137A	p.R46H	CGGGCCGCATGGA	.	45	4	42	0	.	0	0	0	0	0
ANKRD30BL	554226	bcgsc.ca	37	2	132919192	132919192	+	RNA	SNP	G	G	A	rs111295191		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	.	.	.	.	AGAGTCGTTGTTG	.	382	16	325	8	.	0	0	0	0	0
MARS2	92935	broad.mit.edu	37	2	198570300	198570300	+	Silent	SNP	G	G	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MARS2-92	NM_138395	exon1	c.G171T	p.A57A	CGCGGCGCCGCAC	.	93	9	58	1	.	0	0	0	0	0
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	210714187	210714187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	UNC80-90	NM_032504	exon22	c.T3473G	p.F1158C	ACAGTTTTGATGA	.	171	59	168	0	.	0	0	0	0	0
BCL2L1	598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	30253881	30253881	+	Silent	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	BCL2L1-1084	NM_138578	exon3	c.T573C	p.F191F	TTCCACAAAAGTA	.	137	71	84	0	.	0	0	0	0	0
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	28305272	28305272	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ADAMTS5-229	NM_007038	exon5	c.G1781C	p.C594S	TTATTACAGTGAC	.	198	57	163	0	.	0	0	0	0	0
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	26761491	26761491	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SEZ6L-95	NM_021115	exon13	c.G2753A	p.G918E	TCCTGGGACAGCC	.	149	49	174	0	.	0	0	0	0	0
IP6K2	51447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	48728866	48728866	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	IP6K2-265	NM_016291	exon4	c.T478C	p.Y160H	TGTAGTACAAGAC	.	146	51	171	0	.	14	8	6	0	0
LAMB2	3913	broad.mit.edu	37	3	49158999	49158999	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	LAMB2-93	NM_002292	exon31	c.G5127A	p.Q1709Q	CTGGTACTGATCA	.	266	6	234	0	.	291	287	4	0	0
OR5H2	79310	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98001882	98001882	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	OR5H2-71	NM_001005482	exon1	c.A151C	p.I51L	GGTCTGATTGCTC	.	275	97	252	0	.	0	0	0	0	0
TPRA1	131601	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	127292425	127292425	+	Missense_Mutation	SNP	G	G	C	rs201165800	alternate_allele	TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	TPRA1-90	NM_001136053	exon11	c.C1061G	p.P354R	TGGCAGGGCATGG	.	74	24	66	0	G|0.999;A|0.001	117	54	63	0	0
MUC4	4585	bcgsc.ca	37	3	195509322	195509322	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MUC4-90	NM_018406	exon2	c.C9129T	p.V3043V	GTCGGTGACAGGA	.	488	33	382	11	.	0	0	0	0	0
TNK2	10188	broad.mit.edu;bcgsc.ca	37	3	195615329	195615329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	TNK2-957	NM_001010938	exon2	c.A320G	p.E107G	AGGTCCTCATTCT	.	255	8	280	0	.	0	0	0	0	0
SLC26A1	10861	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	982690	982690	+	Silent	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SLC26A1-91	NM_022042	exon3	c.T2037C	p.S679S	GTGCACACTGAGG	.	114	29	106	1	.	0	0	0	0	0
ADD1	118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	2883755	2883755	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ADD1-92	NM_014190	exon3	c.C326A	p.A109D	CAGCAGCTCCGCA	.	220	91	161	0	.	0	0	0	0	0
SLC34A2	10568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	25676246	25676246	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SLC34A2-95	NM_006424	exon12	c.C1453G	p.L485V	AGTTCACTCCAGG	.	206	80	174	0	.	0	0	0	0	0
CWH43	80157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	49032879	49032879	+	Silent	SNP	T	T	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CWH43-93	NM_025087	exon11	c.T1410G	p.S470S	TGCTTCTAAGCCC	.	115	41	142	0	.	0	0	0	0	0
PRKG2	5593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	82061797	82061797	+	Silent	SNP	A	A	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PRKG2-524	NM_006259	exon11	c.T1434A	p.A478A	AGCAAAAGCAACA	.	156	37	139	0	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537018	88537018	+	Silent	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DSPP-90	NM_014208	exon5	c.T3204C	p.D1068D	CAGTGATAGCAGT	.	361	24	274	8	.	0	0	0	0	0
DSPP	1834	bcgsc.ca	37	4	88537027	88537027	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	DSPP-90	NM_014208	exon5	c.C3213A	p.D1071E	CAGTGACAGCAGT	.	338	20	253	1	.	0	0	0	0	0
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	187627969	187627969	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	FAT1-34	NM_005245	exon2	c.G3013A	p.D1005N	CCTTGTCTTTGGC	.	262	91	219	0	.	2	0	2	0	0
SKIV2L2	23517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	54635905	54635905	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	SKIV2L2-92	NM_015360	exon6	c.A583G	p.S195G	GCTCTGAGTAACC	.	80	24	102	0	.	0	0	0	0	0
VCAN	1462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	82815685	82815685	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	VCAN-238	NM_004385	exon7	c.G1560A	p.L520L	ACCATTGGTAACT	.	134	43	148	0	.	0	0	0	0	0
CHD1	1105	ucsc.edu;bcgsc.ca	37	5	98238644	98238644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CHD1-274	NM_001270	exon4	c.G397A	p.D133N	AGTCATCGGAATC	.	37	4	37	0	.	0	0	0	0	0
BTNL8	79908	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180338541	180338541	+	Silent	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	BTNL8-24	NM_001159708	exon3	c.C600T	p.N200N	AGAGAACGCCGGG	.	96	30	83	1	.	0	0	0	0	0
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	13283687	13283687	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_030948	exon13	c.G1543C	p.E515Q	CTTCGGGAAAGAA	.	124	43	78	0	.	2	2	0	0	0
ZFP57	346171	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	29643249	29643249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ZFP57-5	NM_001109809	exon3	c.A266G	p.H89R	GGCTTATGCAGAA	.	218	91	223	0	.	0	0	0	0	0
ABHD16A	7920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31657863	31657863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ABHD16A-91	NM_021160	exon11	c.G949A	p.G317R	TGCTTCCAGCAAA	.	76	25	91	0	.	0	0	0	0	0
STXBP5	134957	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	147648298	147648298	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	STXBP5-90	NM_139244	exon18	c.G1966C	p.D656H	ATGGTTGACTACC	.	86	28	83	1	.	0	0	0	0	0
GRB10	2887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	50742288	50742288	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	GRB10-1272	NM_005311	exon3	c.C207T	p.A69A	GCTGCAGGCCGAG	.	91	8	51	0	.	2	2	0	0	0
WDR91	29062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	134893687	134893687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	WDR91-137	NM_014149	exon3	c.G367T	p.A123S	ACTCAGCCTGGTT	.	521	195	290	0	.	3	0	3	0	0
CSMD1	64478	bcgsc.ca	37	8	2832127	2832127	+	Silent	SNP	T	T	C	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CSMD1-86	NM_033225	exon56	c.A8586G	p.P2862P	GACCCCTGGGTGT	.	54	4	64	0	.	0	0	0	0	0
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	77616434	77616434	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	ZFHX4-98	NM_024721	exon2	c.G111A	p.G37G	TGCAGGGATGGAG	.	274	84	238	0	.	0	0	0	0	0
TONSL	4796	hgsc.bcm.edu	37	8	145654714	145654714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	TONSL-92	NM_013432	exon26	c.G3949A	p.A1317T	GGACGGCGCAGCC	.	7	5	0	0	.	0	0	0	0	0
CD274	29126	broad.mit.edu	37	9	5457410	5457410	+	Silent	SNP	G	G	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CD274-227	NM_014143	exon3	c.G384A	p.V128V	TACTGTGAAAGTC	.	101	3	77	0	.	0	0	0	0	0
FOXD4L5	653427	broad.mit.edu	37	9	70177822	70177822	+	Silent	SNP	T	T	C	rs2921291		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_001126334	exon1	c.A162G	p.S54S	CTGGAGTGACTGC	.	234	6	194	1	C|1.000;|0.000	0	0	0	0	0
PTCHD1	139411	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23411325	23411325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PTCHD1-135	NM_173495	exon3	c.A1690G	p.I564V	GAGTCTATAGAAT	.	41	10	56	1	.	0	0	0	0	0
CTAGE5	4253	broad.mit.edu	37	14	39815176	39815179	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	CTAGE5-90	NM_001247989	exon21	c.1915_1918del	p.639_640del	GGTAGACTGTCTG	.	200	11	220	0	.	0	0	0	0	0
EZH1	2145	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	40880917	40880920	+	Frame_Shift_Del	DEL	AGTA	AGTA	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	AGTA	AGTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	EZH1-229	NM_001991	exon3	c.40_43del	p.14_15del	.	.	93	26	78	0	.	0	0	0	0	0
MYPOP	339344	broad.mit.edu	37	19	46394285	46394285	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MYPOP-90	NM_001012643	exon3	c.796delC	p.Q266fs	CCTGCTGGGCCCG	.	17	7	21	0	.	0	0	0	0	0
RAD51AP2	729475	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	17692220	17692220	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	RAD51AP2-23	NM_001099218	exon3	c.3331delA	p.S1111fs	.	.	105	17	87	0	.	0	0	0	0	0
MPHOSPH10	10199	broad.mit.edu;bcgsc.ca	37	2	71368372	71368378	+	Frame_Shift_Del	DEL	ATGTAGT	ATGTAGT	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	ATGTAGT	ATGTAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	MPHOSPH10-93	NM_005791	exon7	c.1319_1325del	p.440_442del	GGGATGATGTAGT	.	155	16	187	0	.	0	0	0	0	0
TRMT10C	54931	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	101284160	101284160	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	.	NM_017819	exon2	c.535delT	p.F179fs	.	.	46	18	30	0	.	0	0	0	0	0
VCAN	1462	broad.mit.edu	37	5	82836607	82836608	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	VCAN-238	NM_004385	exon8	c.7785_7786del	p.2595_2596del	GCAAACAGATATA	.	139	8	146	0	.	0	0	0	0	0
PLS3	5358	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	114880464	114880465	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-MH-A562-01A-11D-A26P-10	TCGA-MH-A562-10A-01D-A26P-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dddea2e4-b8c3-4157-9d92-6de472e8375a	bd8aec5f-0589-436d-9c8e-eaf4e60046e2	.	PLS3-193	NM_005032	exon12	c.1335_1336insA	p.V445fs	.	.	141	92	140	0	.	0	0	0	0	0
