Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
H6PD	9563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9305536	9305536	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	H6PD-90	NM_004285	exon2	c.C543T	p.F181F	CCACTTCTCAGCC	.	101	39	108	0	.	10	5	5	0	0
NCMAP	400746	broad.mit.edu;bcgsc.ca	37	1	24921934	24921934	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	NM_001010980	exon2	c.A13T	p.T5S	ACAGCCACCCCTC	.	78	36	93	3	.	1	1	0	0	0
KANK4	163782	bcgsc.ca	37	1	62740358	62740358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KANK4-74	NM_181712	exon3	c.T418A	p.L140M	CTTCCAACTGTCT	.	61	27	51	1	.	0	0	0	0	0
RABGGTB	5876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	76253203	76253203	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	RABGGTB-227	NM_004582	exon2	c.A25G	p.I9V	GATGTTATTATCA	.	162	72	127	0	.	113	56	57	0	0
OVGP1	5016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	111957940	111957940	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	OVGP1-135	NM_002557	exon11	c.T1183G	p.F395V	GCCAAAATTGTGG	.	98	38	91	0	.	63	34	29	0	0
NOTCH2	4853	bcgsc.ca	37	1	120506375	120506375	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NOTCH2-1441	NM_024408	exon11	c.C1737A	p.C579X	ATGGTGGCAAGGA	.	93	5	74	0	.	14	14	0	0	0
CCT3	7203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156294858	156294858	+	Silent	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CCT3-92	NM_005998	exon6	c.T327C	p.A109A	GTGCTCAGCTACA	.	36	17	30	0	.	172	88	84	0	0
HHIPL2	79802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	222705394	222705394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	HHIPL2-69	NM_024746	exon6	c.G1637A	p.C546Y	CCCAGGCAAAGAT	.	65	31	56	0	.	0	0	0	0	0
C1orf95	375057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	226784625	226784625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	C1orf95-91	NM_001003665	exon2	c.G325A	p.V109I	GCCATCGTCATGG	.	91	38	84	0	.	0	0	0	0	0
CYP26C1	340665	broad.mit.edu	37	10	94828244	94828244	+	Silent	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CYP26C1-90	NM_183374	exon6	c.C1359A	p.G453G	GTTCGGCGGCGGT	.	54	4	42	0	.	0	0	0	0	0
MUC5B	727897	hgsc.bcm.edu	37	11	1276776	1276776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	NM_002458	exon37	c.G16054T	p.G5352C	GCAACCGGTGGCC	.	62	4	53	0	.	0	0	0	0	0
OSBPL5	114879	ucsc.edu	37	11	3143330	3143330	+	Splice_Site	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	OSBPL5-113	NM_001144063	exon6	c.301-2A>G	.	TGCGCCTGGGCCC	.	39	4	33	0	.	0	0	0	0	0
DTX4	23220	ucsc.edu;bcgsc.ca	37	11	58949824	58949824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DTX4-501	NM_015177	exon2	c.C824T	p.A275V	CTCCTGCCAGTCC	.	32	4	30	0	.	2	2	0	0	0
SF3B2	10992	broad.mit.edu;bcgsc.ca	37	11	65826742	65826742	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	SF3B2-92	NM_006842	exon11	c.C1253T	p.A418V	CTGCAGCCCCCAA	.	141	6	132	0	.	153	152	1	0	0
VPS26B	112936	broad.mit.edu;bcgsc.ca	37	11	134095054	134095054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	VPS26B-90	NM_052875	exon1	c.A38T	p.E13V	AGGTGGAAATCCT	.	89	44	92	2	.	7	5	2	0	0
WNT10B	7480	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	49362081	49362081	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	WNT10B-565	NM_003394	exon4	c.C359A	p.S120Y	GAGAAGGAAAAAG	.	16	12	16	0	.	0	0	0	0	0
BAZ2A	11176	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	57006901	57006901	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	BAZ2A-22	NM_013449	exon5	c.A1039T	p.N347Y	TAGCATTATTGAG	.	122	57	88	1	.	8	2	6	0	0
TMTC2	160335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	83251132	83251132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TMTC2-92	NM_152588	exon2	c.G427T	p.G143W	GATGTCGGGGCCA	.	84	37	82	0	.	1	0	1	0	0
FOXA1	3169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	38060788	38060788	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FOXA1-226	NM_004496	exon2	c.T1201A	p.S401T	TGATGGAGAACGG	.	116	63	98	0	.	1	1	0	0	0
C14orf169	79697	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	73959009	73959009	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	.	.	.	.	TGGGGTGACTTCT	.	53	24	45	0	.	13	8	5	0	0
IRF2BPL	64207	hgsc.bcm.edu	37	14	77493794	77493794	+	Silent	SNP	T	T	C	rs28718623		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	IRF2BPL-90	NM_024496	exon1	c.A342G	p.Q114Q	CTGCTGTTGCTGC	.	6	5	3	0	.	9962	69	9878	4	11
MOK	5891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102718326	102718326	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	NM_014226	exon5	c.G290T	p.R97I	GGGTATCTTCTCC	.	130	60	124	0	.	0	0	0	0	0
C15orf56	644809	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40544920	40544920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	C15orf56-68	NM_001039905	exon1	c.G170A	p.R57Q	GAGGTTCGCGGCG	.	137	59	121	0	.	1	1	0	0	0
EME2	197342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1826070	1826070	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	EME2-229	NM_001257370	exon8	c.C971T	p.A324V	CCTAGGCGCTGGA	.	62	22	39	0	.	0	0	0	0	0
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2369834	2369834	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ABCA3-1015	NM_001089	exon8	c.C621G	p.I207M	TTCCCGGATGTAC	.	33	10	34	0	.	0	0	0	0	0
PRM3	58531	hgsc.bcm.edu	37	16	11367405	11367405	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	.	NM_021247	exon1	c.C48G	p.H16Q	TGGGCTGTGGCCT	.	21	7	15	0	.	0	0	0	0	0
DCTPP1	79077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30435583	30435583	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DCTPP1-90	NM_024096	exon3	c.T484A	p.C162S	AGTCACAGGGAAT	.	80	43	54	0	.	77	35	42	0	0
DHX38	9785	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	72142801	72142801	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DHX38-227	NM_014003	exon24	c.C3358T	p.H1120Y	GTGTATCACGAGT	.	62	23	80	0	.	26	14	12	0	0
NCOR1	9611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	15971431	15971431	+	Silent	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NCOR1-229	NM_001190440	exon31	c.A4566C	p.T1522T	AGAAATTGTAACT	.	117	32	90	0	.	0	0	0	0	0
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	38711306	38711306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CCR7-659	NM_001838	exon3	c.C825A	p.F275L	CAGCTGGAAGACT	.	129	41	72	0	.	0	0	0	0	0
SLC4A1	6521	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42335911	42335911	+	Silent	SNP	T	T	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	SLC4A1-92	NM_000342	exon10	c.A957T	p.L319L	CAGCACTAGGCTG	.	189	56	118	1	.	0	0	0	0	0
PPP1R9B	84687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48216644	48216644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PPP1R9B-90	.	.	.	.	AGCTGCTGGATCT	.	55	16	39	0	.	52	37	15	0	0
KIF2B	84643	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	51901648	51901648	+	Silent	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KIF2B-98	NM_032559	exon1	c.C1254T	p.V418V	ACCTGTCAACGCT	.	221	68	137	0	.	0	0	0	0	0
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61613115	61613115	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KCNH6-91	NM_030779	exon6	c.A1187G	p.Y396C	CTGAGTATGGGGC	.	98	56	72	1	.	0	0	0	0	0
LAMA1	284217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	6992669	6992669	+	Silent	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	LAMA1-149	NM_005559	exon36	c.C5059T	p.L1687L	TGGGTAGTAGGAA	.	137	69	118	1	.	6	5	1	0	0
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9257703	9257703	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ANKRD12-92	NM_015208	exon9	c.C4438G	p.Q1480E	TGTGCTCAGGATC	.	104	40	118	0	.	3	2	1	0	0
MBP	4155	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	74700845	74700845	+	Silent	SNP	C	C	T	rs112511603		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MBP-515	NM_001025101	exon6	c.G705A	p.P235P	CTGCGACGGGGGT	.	65	28	80	0	C|0.500;T|0.500	0	0	0	0	0
ZNF43	7594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	21990696	21990696	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ZNF43-154	NM_001256653	exon4	c.T2170A	p.F724I	GGTTAAAAGCTTT	.	37	20	27	0	.	7	6	1	0	0
FBXO46	23403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46215847	46215847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FBXO46-159	NM_001080469	exon2	c.A907G	p.K303E	TGATCTTGTCCTT	.	101	47	75	0	.	5	0	5	0	0
FANCL	55120	broad.mit.edu	37	2	58386912	58386912	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FANCL-661	NM_001114636	exon14	c.A1131G	p.G377G	TTTCCTTCCAGAC	.	158	6	142	0	.	11	11	0	0	0
CTNNA2	1496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	80136916	80136916	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CTNNA2-368	NM_001164883	exon7	c.T1049C	p.M350T	AGTACATGAATAA	.	169	70	156	0	.	0	0	0	0	0
ZNF804A	91752	hgsc.bcm.edu	37	2	185802211	185802211	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ZNF804A-163	NM_194250	exon4	c.C2088A	p.N696K	AAAGAACACAATA	.	570	32	137	0	.	0	0	0	0	0
ZNF804A	91752	hgsc.bcm.edu	37	2	185802216	185802216	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ZNF804A-163	NM_194250	exon4	c.T2093C	p.I698T	ACACAATACTTTT	.	569	30	137	0	.	0	0	0	0	0
WDR75	84128	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	190306269	190306269	+	Missense_Mutation	SNP	G	G	C	rs201125667		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	WDR75-92	NM_032168	exon1	c.G51C	p.L17F	CGAGTTGAACTTT	.	406	80	173	1	G|0.999;C|0.001	20	13	7	0	0
CUL3	8452	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	225362540	225362540	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CUL3-229	NM_001257198	exon12	c.G1655C	p.R552P	AGCTGTCGACCAC	.	52	48	122	0	.	33	0	33	0	0
TRIP12	9320	bcgsc.ca	37	2	230675639	230675639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TRIP12-572	NM_004238	exon14	c.G2034A	p.M678I	GGAACACATCAGA	.	167	149	262	4	.	7	0	7	0	0
FRG1B	284802	bcgsc.ca	37	20	29625956	29625956	+	RNA	SNP	G	G	A	rs147809085		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FRG1B-22	.	.	.	.	GACCAAGAGAACA	.	462	15	415	6	.	92	92	0	0	0
EDN3	1908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57876603	57876603	+	Missense_Mutation	SNP	G	G	T	rs457651	alternate_allele	TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	EDN3-91	NM_207034	exon2	c.G191T	p.G64V	GCGAGGGGACTGT	.	94	43	77	0	G|1.000;A|0.000	0	0	0	0	0
CISH	1154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	50645901	50645901	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CISH-710	NM_013324	exon3	c.G195T	p.E65D	GGTACCCTCTGCC	.	49	28	64	0	.	64	35	29	0	0
DNAH1	25981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52380547	52380547	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DNAH1-67	NM_015512	exon11	c.C1716A	p.S572R	CAGCAGCCTGCGC	.	42	11	36	0	.	1	1	0	0	0
A4GNT	51146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	137849689	137849689	+	Splice_Site	SNP	A	A	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	A4GNT-90	NM_016161	exon3	c.408+2T>G	.	ACACTTACTTGAT	.	195	96	136	0	.	0	0	0	0	0
PLS1	5357	ucsc.edu;bcgsc.ca	37	3	142403182	142403182	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PLS1-91	NM_001172312	exon8	c.A833G	p.Y278C	TGAACTACCATCT	.	230	112	212	2	.	57	30	27	0	0
ACTL6A	86	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179298770	179298770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ACTL6A-91	NM_004301	exon10	c.G919T	p.G307X	CCAGAAGGATTAT	.	304	158	306	2	.	17	17	0	0	0
KLB	152831	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	39435920	39435920	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KLB-69	NM_175737	exon2	c.G916T	p.E306X	TGGATCGAGCCAA	.	185	76	175	1	.	0	0	0	0	0
WDFY3	23001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	85722839	85722839	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	WDFY3-93	NM_014991	exon17	c.G2786T	p.R929L	GCTAATCGTTCAA	.	36	16	24	0	.	3	1	2	0	0
ADAMTS12	81792	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	33534943	33534943	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ADAMTS12-232	NM_030955	exon23	c.G4601T	p.S1534I	CCGGCACTTTTCT	.	91	44	65	0	.	0	0	0	0	0
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140605127	140605127	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PCDHB14-91	NM_018934	exon1	c.G2050A	p.D684N	CAGGCCGACTCCC	.	73	5	85	0	.	3	3	0	0	0
E2F3	1871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	20490451	20490451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	E2F3-414	NM_001949	exon7	c.C1188G	p.N396K	GGGAAACCTTTCT	.	101	52	83	0	.	2	1	1	0	0
HLA-A	3105	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29910554	29910554	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	HLA-A-92	NM_001242758	exon2	c.T94G	p.F32V	AGGTATTTCTTCA	.	134	38	109	0	.	958	958	0	0	0
BRD2	6046	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	6	32944714	32944714	+	Splice_Site	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	BRD2-398	NM_005104	exon7	c.1200+1G>A	.	GTCAAGGTACCCA	.	42	21	29	0	.	21	1	20	0	0
CAPN11	11131	broad.mit.edu	37	6	44148401	44148401	+	Splice_Site	SNP	T	T	G	rs200836901	alternate_allele	TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CAPN11-136	NM_007058	exon16	c.1746+2T>G	.	GAGAGGTGAGCAG	.	76	21	89	15	T|0.999;A|0.000	0	0	0	0	0
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90392973	90392973	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MDN1-100	NM_014611	exon73	c.A11980C	p.K3994Q	CTTCCTTGTCACT	.	113	46	99	1	.	0	0	0	0	0
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	101075824	101075824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ASCC3-96	NM_006828	exon28	c.G4415T	p.R1472L	TTTGTTCGAGATA	.	69	30	74	0	.	10	1	9	0	0
NRCAM	4897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	107807453	107807453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NRCAM-156	NM_001037132	exon27	c.A3379G	p.M1127V	CTGGCATTAGACC	.	133	50	123	0	.	0	0	0	0	0
OR6V1	346517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142750247	142750247	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	OR6V1-23	NM_001001667	exon1	c.G810C	p.K270N	CAGGAAGGTCGTG	.	80	41	72	0	.	0	0	0	0	0
DNAJB6	10049	broad.mit.edu;bcgsc.ca	37	7	157177601	157177601	+	Silent	SNP	T	T	C	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DNAJB6-93	NM_058246	exon7	c.T519C	p.T173T	CCTCACTTCATTC	.	95	37	78	1	.	31	31	0	0	0
DNAJB6	10049	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	157177612	157177612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DNAJB6-93	NM_058246	exon7	c.C530T	p.S177F	TCTCTTCCACGTC	.	104	43	96	1	.	61	61	0	0	0
SNAI2	6591	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	49833817	49833817	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	SNAI2-188	NM_003068	exon1	c.G8C	p.R3P	AAGGAGCGCGGCA	.	38	22	36	0	.	0	0	0	0	0
RFX3	5991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	3301560	3301560	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	RFX3-93	NM_134428	exon6	c.C535T	p.L179F	TGAGAAGAGAGCT	.	87	44	75	0	.	0	0	0	0	0
RASEF	158158	broad.mit.edu;bcgsc.ca	37	9	85637283	85637283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	RASEF-280	NM_152573	exon3	c.A637C	p.I213L	CCTGAATCCTCTG	.	69	27	95	2	.	7	4	3	0	0
GLUD2	2747	ucsc.edu	37	X	120183026	120183026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	GLUD2-131	NM_012084	exon1	c.T1488G	p.S496R	AGACAGTATATCG	.	176	2	145	0	.	157	5	151	1	0
ATP11C	286410	broad.mit.edu;bcgsc.ca	37	X	138857091	138857091	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ATP11C-198	NM_001010986	exon19	c.G1983C	p.E661D	AATGGTCTCTGCA	.	97	54	94	1	.	2	2	0	0	0
CNGA2	1260	bcgsc.ca	37	X	150912596	150912596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CNGA2-193	NM_005140	exon7	c.C1621A	p.R541S	AATATCCGCAGCC	.	97	5	90	1	.	0	0	0	0	0
KANK4	163782	bcgsc.ca	37	1	62740357	62740357	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KANK4-74	NM_181712	exon3	c.419delT	p.L140fs	GCTTCCAACTGTC	.	61	24	50	1	.	0	0	0	0	0
KANK4	163782	hgsc.bcm.edu	37	1	62740357	62740358	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	KANK4-74	NM_181712	exon3	c.418_419del	p.140_140del	.	.	62	15	51	0	.	0	0	0	0	0
CASC5	57082	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	40914359	40914359	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CASC5-660	NM_170589	exon11	c.1975delA	p.S659fs	.	.	111	45	103	0	.	0	0	0	0	0
ADCY9	115	hgsc.bcm.edu;bcgsc.ca	37	16	4042307	4042307	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ADCY9-139	NM_001116	exon5	c.2047delG	p.E683fs	.	.	76	26	69	0	.	0	0	0	0	0
MYH13	8735	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	10215392	10215392	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MYH13-6	NM_003802	exon32	c.4367delT	p.V1456fs	.	.	93	30	63	0	.	0	0	0	0	0
DLX2	1746	broad.mit.edu	37	2	172967129	172967131	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	GCT	GCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	DLX2-515	NM_004405	exon1	c.136_138del	p.46_46del	GTGGAGGCTGCTG	.	280	12	78	0	.	0	0	0	0	0
TFPI	7035	broad.mit.edu	37	2	188332481	188332481	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TFPI-91	NM_006287	exon7	c.807delA	p.K269fs	TATACCTTTTTTA	.	615	9	118	0	.	0	0	0	0	0
FAM117B	150864	broad.mit.edu	37	2	203500041	203500043	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	FAM117B-91	NM_173511	exon1	c.131_133del	p.44_45del	AGCTGAAGCAGCA	.	13	4	19	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	114	47	242	0	.	0	0	0	0	0
ULK4	54986	hgsc.bcm.edu;bcgsc.ca	37	3	41795965	41795965	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	ULK4-297	NM_017886	exon22	c.2209delA	p.I737fs	.	.	123	42	106	0	.	0	0	0	0	0
IL17RB	55540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	53886139	53886147	+	In_Frame_Del	DEL	CCCTCTGGT	CCCTCTGGT	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	CCCTCTGGT	CCCTCTGGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	IL17RB-229	NM_018725	exon4	c.340_348del	p.114_116del	.	.	103	35	126	0	.	0	0	0	0	0
PRKCI	5584	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	170020905	170020905	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	PRKCI-1378	NM_002740	exon18	c.1781delA	p.E594fs	.	.	86	36	71	0	.	0	0	0	0	0
CD83	9308	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	14133946	14133946	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	CD83-90	NM_004233	exon4	c.449delC	p.A150fs	.	.	107	49	73	0	.	0	0	0	0	0
MTSS1	9788	hgsc.bcm.edu;bcgsc.ca	37	8	125570101	125570101	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	MTSS1-91	NM_014751	exon11	c.1051delT	p.S351fs	.	.	56	17	67	0	.	0	0	0	0	0
EXOSC2	23404	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	133579154	133579154	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	EXOSC2-91	NM_014285	exon9	c.875delA	p.E292fs	.	.	92	46	67	0	.	0	0	0	0	0
TMEM97	27346	broad.mit.edu	37	17	26653806	26653807	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	TMEM97-90	NM_014573	exon3	c.518_519insA	p.R173fs	AGAAAAGAAAAAA	.	87	8	52	0	.	0	0	0	0	0
AR	367	hgsc.bcm.edu	37	X	66765207	66765208	+	Missense_Mutation	DNP	GC	GC	AG	novel		TCGA-A4-A5Y0-01A-11D-A31X-10	TCGA-A4-A5Y0-11A-11D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	257fa140-0c01-4edc-8247-82c96ecfb384	6022828f-21e4-4e71-8abd-439d01decea4	.	AR-661	NM_000044	exon1	c.C220G	p.Q74E	CAGCAGCAGCAGC	.	104.0	8.0	97.0	0.0	.	0	0	0	0	0
