Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
SNIP1	79753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	38005993	38005993	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SNIP1-227	NM_024700	exon3	c.G691C	p.A231P	GAAGTGCCCCAGA	.	118	63	113	0	.	2	1	1	0	0
DBT	1629	ucsc.edu;bcgsc.ca	37	1	100676255	100676255	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DBT-91	NM_001918	exon8	c.T1012C	p.Y338H	CCTTATATGTTAT	.	351	166	353	3	.	0	0	0	0	0
CRTC2	200186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	153926765	153926765	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CRTC2-228	NM_181715	exon4	c.T400C	p.Y134H	ATAAGTAGGCAGG	.	46	16	70	0	.	4	4	0	0	0
C1orf27	54953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	186355194	186355194	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	C1orf27-23	NM_001164245	exon4	c.T309C	p.D103D	AAATGATTTTCAA	.	84	37	117	0	.	0	0	0	0	0
PHYHIPL	84457	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	60936661	60936661	+	Silent	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PHYHIPL-90	NM_032439	exon1	c.C48A	p.P16P	CAGCCCCTGTGAG	.	46	17	40	0	.	3	2	1	0	0
PALD1	27143	ucsc.edu	37	10	72289809	72289809	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_014431	exon4	c.G453T	p.Q151H	ACTCCAGAAGGAC	.	38	4	35	0	.	0	0	0	0	0
PIPSL	266971	ucsc.edu	37	10	95718760	95718760	+	RNA	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	.	.	.	.	GTCCATGGCTGAG	.	100	2	109	0	.	411	0	411	0	0
MCMBP	79892	broad.mit.edu	37	10	121591063	121591063	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MCMBP-93	NM_024834	exon16	c.C1852A	p.L618M	CTCTCAGCCATCG	.	81	4	81	1	.	27	27	0	0	0
INSC	387755	broad.mit.edu;bcgsc.ca	37	11	15197495	15197495	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	INSC-94	NM_001031853	exon3	c.C406A	p.R136S	GAGCTGCGCAGGA	.	47	22	53	2	.	0	0	0	0	0
MRPL11	65003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	66204727	66204727	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MRPL11-90	NM_170739	exon4	c.G321C	p.E107D	TGCCACCTCTTTC	.	41	22	38	0	.	0	0	0	0	0
MTL5	9633	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	68518126	68518126	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MTL5-155	NM_001039656	exon2	c.G3T	p.M1I	CTCCTCCATGGCG	.	33	18	33	0	.	0	0	0	0	0
P2RY6	5031	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	73007583	73007583	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	P2RY6-501	NM_176796	exon4	c.C20A	p.T7K	ATGGCACAGGCCA	.	60	24	80	1	.	2	2	0	0	0
MAML2	84441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	95825407	95825407	+	Silent	SNP	C	C	T	rs61901862		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MAML2-850	NM_032427	exon2	c.G1788A	p.Q596Q	CTGCTGCTGCTGC	.	88	10	63	0	C|0.250;T|0.750	913	904	9	0	0
SRGAP1	57522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	64377795	64377795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SRGAP1-653	NM_020762	exon2	c.C136T	p.L46F	CAGCTTCTCCAGG	.	59	24	84	0	.	0	0	0	0	0
SCYL2	55681	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	100731225	100731225	+	Silent	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SCYL2-336	NM_017988	exon17	c.C2086T	p.L696L	CAGAAGCTGAAAA	.	50	26	60	1	.	0	0	0	0	0
ARL1	400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101799660	101799660	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ARL1-205	NM_001177	exon2	c.A104G	p.Y35C	AATCTGTACAAAA	.	83	39	123	0	.	31	19	12	0	0
USP30	84749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109490532	109490532	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	USP30-658	NM_032663	exon1	c.A49T	p.I17F	AGGGCCATCCAGC	.	55	26	72	0	.	0	0	0	0	0
BRCA2	675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32972588	32972588	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BRCA2-3153	NM_000059	exon27	c.A9938C	p.K3313T	CCATAAAGAAAAA	.	125	51	104	0	.	0	0	0	0	0
SPRY2	10253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	80911824	80911824	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SPRY2-659	NM_005842	exon2	c.A17G	p.Q6R	CCACTCTGAGCTC	.	32	17	13	0	.	4	0	4	0	0
ITPK1	3705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	93408247	93408247	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ITPK1-115	NM_001142593	exon11	c.T904A	p.Y302N	CCTCGTAGCCTGG	.	31	18	42	0	.	0	0	0	0	0
HSP90AA1	3320	broad.mit.edu;ucsc.edu	37	14	102548766	102548766	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HSP90AA1-949	NM_001017963	exon11	c.C2137T	p.R713X	CCAATCGGTTTGA	.	34	14	44	0	.	113	110	2	0	1
WDR20	91833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675840	102675840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	WDR20-90	NM_001242417	exon4	c.A1426G	p.S476G	GCTGGCAGCAAAA	.	73	31	78	0	.	6	2	4	0	0
GLCE	26035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	69548696	69548696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	GLCE-92	NM_015554	exon3	c.T551C	p.V184A	TGGAAGTCCGAGA	.	46	16	58	0	.	0	0	0	0	0
MYO9A	4649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72190184	72190184	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MYO9A-93	NM_006901	exon25	c.G4660C	p.V1554L	TCTCTACTCTTTG	.	93	42	76	0	.	1	0	1	0	0
TMEM202	338949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72698982	72698982	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TMEM202-69	NM_001080462	exon3	c.T377A	p.V126D	TCTCTGTCTTTAC	.	115	55	124	0	.	0	0	0	0	0
SCAMP5	192683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75309011	75309011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SCAMP5-23	NM_001178111	exon5	c.G214T	p.G72C	AACTTTGGCCTCG	.	39	17	47	0	.	0	0	0	0	0
SMG1	23049	broad.mit.edu	37	16	18864921	18864921	+	Silent	SNP	G	G	T	rs188559863	byfrequency;alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SMG1-1160	NM_015092	exon31	c.C4752A	p.I1584I	ACTCTCGATCCGA	.	108	4	116	0	G|0.999;A|0.001	0	0	0	0	0
ITGAD	3681	broad.mit.edu;bcgsc.ca	37	16	31414858	31414858	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ITGAD-226	NM_005353	exon7	c.A596C	p.H199P	AGATCCACTTCAC	.	64	32	51	1	.	0	0	0	0	0
LCAT	3931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67976796	67976796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	LCAT-44	NM_000229	exon3	c.C395A	p.S132Y	TCCACAGAGTAGG	.	29	12	40	0	.	10	8	2	0	0
KRTAP4-7	100132476	broad.mit.edu	37	17	39240627	39240627	+	Missense_Mutation	SNP	T	T	C	rs189343211		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_033061	exon1	c.T169C	p.S57P	TGCCAGTCTGTGT	.	69	13	40	2	.	0	0	0	0	0
FAM134C	162427	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40734802	40734802	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FAM134C-70	NM_178126	exon8	c.G833T	p.R278M	AATTCCCTGGCAA	.	101	34	84	1	.	7	4	3	0	0
HEXIM1	10614	broad.mit.edu	37	17	43226748	43226748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HEXIM1-23	NM_006460	exon1	c.A191G	p.E64G	AGGGGGAAGGGAG	.	182	7	154	0	.	54	54	0	0	0
PPP1R9B	84687	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48221032	48221032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PPP1R9B-90	.	.	.	.	AGGCCCATGTCTG	.	58	35	61	0	.	18	11	7	0	0
TMEM104	54868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72781730	72781730	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TMEM104-90	NM_017728	exon3	c.T155A	p.L52Q	TGTTCCTGGGCTT	.	60	34	52	0	.	0	0	0	0	0
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6312214	6312214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ACER1-90	NM_133492	exon3	c.G296A	p.G99D	CTATAGCCACTGC	.	68	24	87	0	.	0	0	0	0	0
SNRNP70	6625	ucsc.edu	37	19	49604725	49604725	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SNRNP70-90	NM_003089	exon7	c.C472T	p.H158Y	GACATGCACTGTG	.	32	4	46	0	.	0	0	0	0	0
UBE2S	27338	broad.mit.edu	37	19	55913035	55913035	+	Silent	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	UBE2S-226	NM_014501	exon4	c.T438C	p.A146A	GGCCCGAGCCGCA	.	103	17	92	3	.	85	85	0	0	0
ZNF71	58491	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57133380	57133380	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ZNF71-91	NM_021216	exon3	c.A725T	p.Y242F	AGCCCTACGCGTG	.	76	30	120	1	.	4	1	3	0	0
DNAJC27	51277	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	25180723	25180723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DNAJC27-228	NM_016544	exon4	c.C361A	p.H121N	TTCCATGAGGTCC	.	134	56	156	1	.	0	0	0	0	0
SLC3A1	6519	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44547379	44547379	+	Silent	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SLC3A1-90	NM_000341	exon10	c.A1659G	p.Q553Q	ATATCAAGATTTA	.	112	38	117	1	.	348	182	166	0	0
RGPD3	653489	broad.mit.edu	37	2	107049632	107049632	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RGPD3-23	NM_001144013	exon16	c.C2315T	p.A772V	GAATCCGCATTTC	.	656	7	725	1	.	0	0	0	0	0
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	128051097	128051097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ERCC3-723	NM_000122	exon2	c.C226A	p.L76I	CCCAGAGGGGCCT	.	51	18	59	0	.	1	1	0	0	0
WDR33	55339	ucsc.edu;bcgsc.ca	37	2	128522273	128522273	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	WDR33-90	NM_001006622	exon6	c.C755T	p.T252I	AATATTGTGTTTA	.	248	121	303	2	.	6	2	4	0	0
NEB	4703	broad.mit.edu	37	2	152359325	152359325	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	NEB-145	NM_001271208	exon168	c.T24015A	p.N8005K	CTCTTGATTGCGT	.	82	6	94	2	.	0	0	0	0	0
SSFA2	6744	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	182780851	182780851	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SSFA2-153	NM_001130445	exon11	c.T2484C	p.T828T	AAGGACTCCTACC	.	100	44	81	1	.	2	2	0	0	0
C21orf2	755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	45750162	45750162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	C21orf2-90	NM_001271441	exon7	c.G1047T	p.E349D	CAGCCCCTCTGCA	.	55	23	46	0	.	189	104	85	0	0
MN1	4330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	28192976	28192976	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MN1-993	NM_002430	exon1	c.G3556A	p.A1186T	CGACGGCGCACTC	.	35	16	26	0	.	0	0	0	0	0
CSNK1E	1454	ucsc.edu	37	22	38690182	38690182	+	Missense_Mutation	SNP	G	G	A	rs200745813		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CSNK1E-1193	NM_001894	exon9	c.C1151T	p.A384V	GCGGGCGCACCCC	.	39	4	41	0	G|1.000;A|0.000	11	11	0	0	0
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	383612	383612	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CHL1-583	NM_001253388	exon5	c.C526A	p.Q176K	ATCGAACAAGATG	.	190	89	199	0	.	0	0	0	0	0
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	46000087	46000087	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FYCO1-91	NM_024513	exon13	c.C3612G	p.Y1204X	GCAGTAGTAACAG	.	117	62	146	0	.	1	1	0	0	0
CELSR3	1951	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	48699894	48699894	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CELSR3-523	NM_001407	exon1	c.C174T	p.G58G	GGCTCCGCCACCG	.	36	17	61	0	.	0	0	0	0	0
FRMD4B	23150	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	69230503	69230503	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FRMD4B-72	NM_015123	exon21	c.C2398T	p.P800S	AAGACGGTGGCTC	.	102	6	72	0	.	1	1	0	0	0
SERPINI2	5276	bcgsc.ca	37	3	167189527	167189527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SERPINI2-228	NM_001012303	exon3	c.T126A	p.D42E	ATAAAGATCCACT	.	76	35	85	0	.	0	0	0	0	0
TP63	8626	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	189612036	189612036	+	Silent	SNP	G	G	C	rs148577576	byfrequency;alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TP63-421	NM_003722	exon14	c.G1788C	p.A596A	ACATGCGATCTGG	.	75	30	85	0	G|0.998;A|0.002	0	0	0	0	0
AFAP1	60312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	7783233	7783233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	AFAP1-90	NM_001134647	exon13	c.C1652A	p.P551H	TCAGCAGGAGAGT	.	106	40	121	0	.	0	0	0	0	0
UGT2B17	7367	broad.mit.edu	37	4	69403575	69403575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	UGT2B17-91	NM_001077	exon6	c.C1361A	p.P454Q	TTCACCGGTTGAT	.	135	5	151	0	.	0	0	0	0	0
ANXA10	11199	bcgsc.ca	37	4	169108558	169108558	+	Silent	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ANXA10-90	NM_007193	exon12	c.C948A	p.I316I	TGCCATCTGTGCT	.	360	148	435	4	.	0	0	0	0	0
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	10992734	10992734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CTNND2-293	NM_001332	exon19	c.G3140A	p.R1047Q	CTTTGCCGGTCCC	.	49	25	47	0	.	1	0	1	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33891915	33891915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ADAMTS12-232	NM_030955	exon1	c.C47A	p.A16D	AGCTGAGCCACCA	.	244	5	303	0	.	0	0	0	0	0
BPHL	670	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3137663	3137663	+	Silent	SNP	C	C	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BPHL-90	NM_004332	exon5	c.C600T	p.D200D	GTATGACTACTTT	.	132	54	178	1	.	13	10	3	0	0
BMP6	654	broad.mit.edu;bcgsc.ca	37	6	7727541	7727541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BMP6-578	NM_001718	exon1	c.A353T	p.Q118L	AGCAGCAGCTGCC	.	75	5	58	0	.	0	0	0	0	0
PHACTR1	221692	bcgsc.ca	37	6	13228185	13228185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_030948	exon9	c.A1124G	p.N375S	ATGACAATAAAGA	.	80	38	94	2	.	1	0	1	0	0
SYNE1	23345	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	152453307	152453307	+	Missense_Mutation	SNP	C	C	A	rs201664645	alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SYNE1-607	NM_182961	exon144	c.G26044T	p.G8682W	CAGACCCTGAGGT	.	111	46	121	1	C|1.000;G|0.000	18	7	11	0	0
HGC6.3	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	168377288	168377288	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_001129895	exon1	c.A45G	p.G15G	GGTCATTCCCCCT	.	129	34	164	0	.	0	0	0	0	0
MEOX2	4223	hgsc.bcm.edu	37	7	15725797	15725797	+	Silent	SNP	A	A	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MEOX2-515	NM_005924	exon1	c.T231C	p.H77H	GTGGTGATGGTGG	.	69	7	41	0	.	0	0	0	0	0
MEOX2	4223	hgsc.bcm.edu	37	7	15725800	15725800	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MEOX2-515	NM_005924	exon1	c.C228T	p.H76H	GTGATGGTGGTGG	.	35	9	11	0	.	0	0	0	0	0
DFNA5	1687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	24784199	24784199	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DFNA5-91	NM_001127453	exon3	c.T386A	p.I129N	TCTCTGATGAGCT	.	66	12	70	0	.	13	8	5	0	0
HOXA9	3205	broad.mit.edu;bcgsc.ca	37	7	27203455	27203455	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HOXA9-1082	NM_152739	exon2	c.C586A	p.P196T	CTGCTGGGTTATC	.	76	19	43	1	.	1	1	0	0	0
HECW1	23072	broad.mit.edu;bcgsc.ca	37	7	43490498	43490498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	HECW1-669	NM_015052	exon12	c.T2470C	p.Y824H	CATCACTACCCAA	.	67	37	46	1	.	0	0	0	0	0
POR	5447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	75615290	75615290	+	Silent	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	POR-23	NM_000941	exon14	c.T1719C	p.D573D	CTCGGATGAGGAC	.	81	18	58	0	.	161	107	54	0	0
ATP5J2-PTCD1	100526740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	99022430	99022430	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_001198879	exon7	c.C1872T	p.L624L	GTCTGTGAGAAGC	.	30	9	35	0	.	0	0	0	0	0
MET	4233	ucsc.edu;bcgsc.ca	37	7	116423413	116423413	+	Missense_Mutation	SNP	T	T	C	rs121913247		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MET-5874	NM_001127500	exon19	c.T3742C	p.Y1248H	GACATGTATGATA	.	151	89	117	2	.	4	1	3	0	0
POT1	25913	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	124503439	124503439	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	POT1-227	NM_015450	exon8	c.A511G	p.K171E	CTGCTTTGCCCAA	.	176	49	116	1	.	0	0	0	0	0
MLL3	58508	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151884405	151884405	+	Silent	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MLL3-1398	NM_170606	exon33	c.T4950A	p.T1650T	GGCAACAGTTGCC	.	138	38	102	1	.	0	0	0	0	0
CTSB	1508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	11705226	11705226	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	CTSB-90	NM_147780	exon9	c.C638A	p.P213H	TAGCCAGGCTCAC	.	53	24	62	0	.	186	96	90	0	0
TRPA1	8989	ucsc.edu	37	8	72958841	72958841	+	Silent	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	TRPA1-230	NM_007332	exon17	c.C1968T	p.I656I	ATACTCGATCTGT	.	39	4	66	0	.	0	0	0	0	0
LRRCC1	85444	ucsc.edu;bcgsc.ca	37	8	86027335	86027335	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	LRRCC1-90	NM_033402	exon5	c.G545A	p.G182E	TCCAAGGGTACAG	.	116	52	153	2	.	0	0	0	0	0
DCAF4L2	138009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	88885869	88885869	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	DCAF4L2-91	NM_152418	exon1	c.G331C	p.E111Q	GGAGCTCAGGGGT	.	85	32	88	0	.	0	0	0	0	0
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110488892	110488892	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PKHD1L1-145	NM_177531	exon52	c.C8913G	p.Y2971X	ATATTACTTGGGT	.	123	50	142	1	.	0	0	0	0	0
OTC	5009	broad.mit.edu	37	X	38260574	38260574	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	OTC-172	NM_000531	exon5	c.C433A	p.Q145K	TATAAACAATCAG	.	88	12	125	8	.	0	0	0	0	0
MID1IP1	58526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	38664368	38664368	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	MID1IP1-130	NM_021242	exon2	c.G169T	p.G57C	GAGGTAGGCGGCA	.	151	74	151	0	.	53	2	51	0	0
RPA4	29935	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	96139635	96139635	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RPA4-227	NM_013347	exon1	c.G326A	p.G109D	GGTTTGGTAGAGA	.	61	33	70	0	.	0	0	0	0	0
RBMX2	51634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	129546641	129546641	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RBMX2-134	NM_016024	exon6	c.A788T	p.K263M	AAGAAAAGACCAG	.	201	91	233	1	.	53	53	0	0	0
FCGR1B	2210	broad.mit.edu	37	1	120927211	120927212	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	.	NM_001017986	exon5	c.768_769del	p.256_257del	ATTTCAGCTCTTC	.	511	66	618	0	.	0	0	0	0	0
FCGR1A	2209	broad.mit.edu	37	1	149762998	149762999	+	Frame_Shift_Del	DEL	GC	GC	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	GC	GC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	FCGR1A-23	NM_000566	exon6	c.1050_1051del	p.350_351del	AGAAGAGCTGAAA	.	420	26	433	0	.	0	0	0	0	0
BCL6B	255877	hgsc.bcm.edu	37	17	6928020	6928031	+	In_Frame_Del	DEL	CAGCAGCAGCAG	CAGCAGCAGCAG	-	rs66978918	alternate_allele	TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	CAGCAGCAGCAG	CAGCAGCAGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BCL6B-227	NM_181844	exon4	c.702_713del	p.234_238del	.	.	67	23	64	0	.	0	0	0	0	0
ACSBG2	81616	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6165945	6165945	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ACSBG2-23	NM_030924	exon7	c.657delG	p.Q219fs	.	.	56	18	70	0	.	0	0	0	0	0
BARD1	580	hgsc.bcm.edu;bcgsc.ca	37	2	215610468	215610468	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	BARD1-415	NM_000465	exon8	c.1788delA	p.K596fs	.	.	75	23	81	0	.	0	0	0	0	0
SERPINI2	5276	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	167189524	167189526	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SERPINI2-228	NM_001012303	exon3	c.127_129del	p.43_43del	.	.	75	35	89	0	.	0	0	0	0	0
SERPINI2	5276	hgsc.bcm.edu	37	3	167189524	167189527	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAGA	AAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	SERPINI2-228	NM_001012303	exon3	c.126_129del	p.42_43del	.	.	79	30	87	0	.	0	0	0	0	0
ADD1	118	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	2930230	2930232	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	ADD1-92	NM_014189	exon15	c.2287_2289del	p.763_763del	.	.	117	50	157	0	.	0	0	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	145547749	145547751	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	TCC	TCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	LARS-90	NM_020117	exon5	c.372_374del	p.124_125del	.	.	88	28	105	0	.	0	0	0	0	0
RPS2	6187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	2014483	2014484	+	In_Frame_Ins	INS	-	-	CGGCCT	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	RPS2-90	NM_002952	exon2	c.144_145insAGGCCG	p.R48delinsRGR	.	.	59	19	55	0	.	0	0	0	0	0
COIL	8161	broad.mit.edu	37	17	55028117	55028118	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	COIL-91	NM_004645	exon2	c.486_487insA	p.N162fs	TCTCTTGTTTTTT	.	122	7	95	0	.	0	0	0	0	0
PCDHGC5	56097	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	140870632	140870633	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B1-A654-01A-11D-A31X-10	TCGA-B1-A654-10A-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	de661caf-c510-4b30-860a-a6b90ce03bdb	d5f5011d-91bc-4ca2-b4ff-2b456e1e1cbb	.	PCDHGC5-25	NM_018929	exon1	c.1825_1826insT	p.L609fs	.	.	38	19	40	0	.	0	0	0	0	0
