Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
FAM132A	388581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1179848	1179848	+	Silent	SNP	G	G	C	rs200735866	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FAM132A-68	NM_001014980	exon2	c.C207G	p.S69S	GGCGTCGGAGAAC	.	90	18	104	0	G|0.999;A|0.000	0	0	0	0	0
TTC34	100287898	bcgsc.ca	37	1	2700302	2700302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001242672	exon4	c.C539A	p.S180Y	AGGAGGGACTCAC	.	298	15	286	1	.	0	0	0	0	0
KCNAB2	8514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	6142274	6142274	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KCNAB2-514	NM_001199862	exon5	c.C320A	p.T107N	TCATGACCTTGGC	.	80	29	97	0	.	0	0	0	0	0
SPEN	23013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	16258337	16258337	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SPEN-298	NM_015001	exon11	c.T5602G	p.L1868V	TTGGAATTGAAGA	.	67	48	81	0	.	4	1	3	0	0
SLC44A3	126969	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	95360468	95360468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLC44A3-91	NM_001114106	exon15	c.T1952C	p.I651T	AGGCCATTGTGAG	.	294	58	295	0	.	53	38	15	0	0
ATXN7L2	127002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	110029635	110029635	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ATXN7L2-92	NM_153340	exon4	c.G305C	p.R102T	AAAGAAGACATGG	.	130	17	124	0	.	0	0	0	0	0
CELF3	11189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151688462	151688462	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CELF3-91	NM_007185	exon1	c.G35A	p.G12E	ATCTGCCCCACAA	.	145	95	139	1	.	0	0	0	0	0
MRPL24	79590	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156707893	156707893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MRPL24-90	NM_145729	exon4	c.C313T	p.R105W	TTCCCCGGTAATC	.	371	70	344	1	.	156	122	34	0	0
AXDND1	126859	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	179460842	179460842	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	AXDND1-93	NM_144696	exon19	c.A2261C	p.K754T	CAAGGAAGTTGTA	.	309	52	309	0	.	0	0	0	0	0
ZNF281	23528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	200376815	200376815	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF281-154	NM_012482	exon2	c.A2019G	p.Q673Q	AGCCTGTTGGAGG	.	66	13	53	0	.	1	1	0	0	0
TSNAX-DISC1	0	bcgsc.ca	37	1	232099383	232099383	+	RNA	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	.	.	.	.	ATTTATTCTCACT	.	154	88	139	0	.	0	0	0	0	0
MSS51	118490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75187422	75187422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001024593	exon3	c.G326T	p.R109I	AGTGCTCTACAGT	.	83	43	110	0	.	0	0	0	0	0
FUT11	170384	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	75533456	75533456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FUT11-90	NM_173540	exon2	c.C1217T	p.A406V	CCCACGCGGCCTC	.	98	50	128	0	.	5	4	1	0	0
KAT6B	23522	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	76781667	76781667	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_012330	exon16	c.G3050C	p.C1017S	CTAGCTGCTGGGA	.	79	29	106	1	.	0	0	0	0	0
GRID1	2894	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	87484287	87484287	+	Silent	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GRID1-142	NM_017551	exon11	c.A1680C	p.P560P	ATCAAATGGAGCA	.	36	5	40	0	.	3	3	0	0	0
MUC2	4583	broad.mit.edu	37	11	1093326	1093326	+	Silent	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC2-90	NM_002457	exon30	c.C5145A	p.G1715G	CACCGGCACACAG	.	82	4	81	0	.	0	0	0	0	0
DCHS1	8642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	6654032	6654032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DCHS1-73	NM_003737	exon6	c.C2711A	p.P904Q	TTTGGTGGTAGCA	.	233	108	189	1	.	1	1	0	0	0
FBXO3	26273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33770331	33770331	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FBXO3-227	NM_012175	exon9	c.G1040A	p.G347E	ACTACTCCAGGTC	.	51	14	50	0	.	0	0	0	0	0
PPP2R5B	5526	hgsc.bcm.edu	37	11	64694184	64694184	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PPP2R5B-660	NM_006244	exon3	c.A200G	p.D67G	CCCCAGATGTGCC	.	35	6	44	0	.	0	0	0	0	0
C11orf93	120376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	111179020	111179020	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001271458	exon5	c.C614G	p.S205W	GCGCATCGTGTGA	.	62	5	125	0	.	2	2	0	0	0
PHLDB1	23187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	118509935	118509935	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PHLDB1-90	NM_001144758	exon12	c.G2702A	p.R901K	GGGGCAGGCCTTT	.	95	77	169	1	.	31	8	23	0	0
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	1902856	1902856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CACNA2D4-23	NM_172364	exon38	c.T3379C	p.C1127R	AGGCACACACAGG	.	150	46	165	1	.	0	0	0	0	0
DDX12P	440081	ucsc.edu	37	12	9578146	9578146	+	RNA	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	.	.	.	.	CAGTGGGGAAGCT	.	329	6	245	4	.	3	3	0	0	0
C2CD5	9847	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	22670928	22670928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_014802	exon8	c.C944A	p.P315H	GTTTTGGGTGTCA	.	85	36	70	0	.	0	0	0	0	0
KIF21A	55605	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	39726729	39726729	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KIF21A-97	NM_001173464	exon19	c.C2668G	p.Q890E	AGGCCTGGACTCT	.	179	72	155	1	.	8	4	4	0	0
PRPH	5630	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49690229	49690229	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PRPH-90	NM_006262	exon3	c.C621T	p.A207A	CGATGCCACTCTG	.	151	9	168	0	.	1	1	0	0	0
KRT85	3891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52754642	52754642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KRT85-91	NM_002283	exon9	c.G1519A	p.A507T	ACTAGGCAAAGCG	.	68	29	77	0	.	0	0	0	0	0
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	70932007	70932007	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PTPRB-226	NM_001109754	exon28	c.T5874A	p.D1958E	CGTGGCATCATCT	.	184	74	145	0	.	0	0	0	0	0
TMCC3	57458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	94965249	94965249	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TMCC3-92	NM_020698	exon4	c.A1396G	p.I466V	ACAGGATATGGTC	.	139	66	176	0	.	1	1	0	0	0
BRCA2	675	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32912283	32912283	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	BRCA2-3153	NM_000059	exon11	c.A3791G	p.K1264R	CAAGTAAATGTCA	.	16	7	20	0	.	0	0	0	0	0
ABCC4	10257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	95840715	95840715	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ABCC4-515	NM_005845	exon10	c.G1345T	p.A449S	TCCCTGCTCCCAC	.	112	23	140	0	.	0	0	0	0	0
DOCK9	23348	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	99449739	99449739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DOCK9-90	.	.	.	.	CCAGCATTGACCT	.	116	18	122	0	.	0	0	0	0	0
ACIN1	22985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	23549484	23549484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ACIN1-156	NM_001164814	exon6	c.G1234C	p.E412Q	TCTCCTCCTCGCT	.	239	111	222	0	.	1	1	0	0	0
SAMD4A	23034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	55203876	55203876	+	Missense_Mutation	SNP	C	C	T	rs138744574	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SAMD4A-90	NM_015589	exon3	c.C850T	p.L284F	CAGTGCCTCCCAT	.	130	52	140	0	C|0.999;A|0.001	0	0	0	0	0
SYNE2	23224	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64522891	64522891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SYNE2-164	NM_182914	exon49	c.C9974A	p.A3325D	CCGAAGCCAAACT	.	132	59	144	1	.	2	2	0	0	0
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64610587	64610587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SYNE2-164	NM_182914	exon83	c.A15404G	p.Y5135C	AGCGCTATGAAAG	.	169	88	216	1	.	2	2	0	0	0
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	64924942	64924942	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MTHFD1-92	NM_005956	exon27	c.T2729C	p.M910T	GCACAATGCCTGG	.	57	24	67	0	.	3	2	1	0	0
RDH11	51109	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	68159767	68159767	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RDH11-91	NM_001252650	exon2	c.A77C	p.K26T	AGCATTTTCCTGC	.	93	35	96	0	.	0	0	0	0	0
FLVCR2	55640	broad.mit.edu;bcgsc.ca	37	14	76107380	76107380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FLVCR2-90	NM_017791	exon7	c.G1318A	p.G440S	TCCTCCGGCCTCC	.	227	7	200	0	.	3	3	0	0	0
WDR20	91833	broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	102675669	102675669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	WDR20-90	NM_001242417	exon4	c.C1255A	p.L419I	GATATCCTTTTCC	.	155	59	166	1	.	2	1	1	0	0
C15orf41	84529	broad.mit.edu;bcgsc.ca	37	15	37002072	37002072	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	C15orf41-46	NM_001130010	exon10	c.T626A	p.I209K	GGCACATAATTCA	.	131	59	131	2	.	1	0	1	0	0
NUSAP1	51203	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	41657726	41657726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_016359	exon7	c.A787G	p.T263A	CAGAGTACCTTGG	.	88	32	72	0	.	4	3	1	0	0
TP53BP1	7158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43771711	43771711	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TP53BP1-294	NM_001141980	exon7	c.A672G	p.E224E	CTGTTCTTCATGC	.	287	103	270	0	.	0	0	0	0	0
CATSPER2	117155	broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	43940128	43940128	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CATSPER2-91	NM_172097	exon2	c.C132T	p.I44I	CTCCCTGATAGTG	.	454	183	486	2	.	1	1	0	0	0
DAPK2	23604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	64204316	64204316	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DAPK2-333	NM_014326	exon10	c.G939C	p.R313S	CCACCGCCTGCGG	.	64	38	47	0	.	0	0	0	0	0
SENP8	123228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72432461	72432461	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SENP8-660	NM_001166340	exon2	c.A497T	p.Y166F	GGATGTACGTGAT	.	33	10	33	0	.	1	1	0	0	0
PARP6	56965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	72543559	72543559	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PARP6-522	NM_020214	exon16	c.C1297T	p.P433S	TGAGAGGTAGTTT	.	100	48	90	0	.	0	0	0	0	0
OR4F6	390648	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	102346642	102346642	+	Silent	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	OR4F6-69	NM_001005326	exon1	c.G720T	p.L240L	TATGCTGTCAGCT	.	124	42	180	0	.	0	0	0	0	0
PLK1	5347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	23690422	23690422	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PLK1-766	NM_005030	exon1	c.C169A	p.R57S	CGGGGCCGCTTTT	.	157	60	98	0	.	8	5	3	0	0
LONP2	83752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	48311386	48311386	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	LONP2-90	NM_031490	exon8	c.T1379G	p.L460R	CTCTGCTTGAGGT	.	188	63	123	0	.	0	0	0	0	0
MINK1	50488	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	4789856	4789856	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MINK1-943	NM_170663	exon10	c.A884G	p.E295G	CCACGGAGCGGCA	.	118	37	136	1	.	7	4	3	0	0
GUCY2D	3000	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7910749	7910749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GUCY2D-319	NM_000180	exon6	c.G1469A	p.R490Q	GGCACCGGCTACT	.	88	6	90	0	.	0	0	0	0	0
MAP2K3	5606	broad.mit.edu;bcgsc.ca	37	17	21208389	21208389	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MAP2K3-790	NM_145109	exon9	c.C723A	p.N241K	GCTGAACCAGAAG	.	131	19	126	2	.	35	35	0	0	0
SGK494	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26938587	26938587	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001174103	exon9	c.T809C	p.M270T	TCACCCATGTACT	.	116	39	89	0	.	2	2	0	0	0
EFCAB5	374786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28296149	28296149	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EFCAB5-70	NM_198529	exon4	c.A531T	p.K177N	TGACAAACTTCTA	.	118	52	162	0	.	0	0	0	0	0
PTRF	284119	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	40557359	40557359	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PTRF-153	NM_012232	exon2	c.A519T	p.K173N	CGACTCTTTCAGC	.	20	4	16	0	.	47	37	10	0	0
MBTD1	54799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	49302371	49302371	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MBTD1-92	NM_017643	exon3	c.T152G	p.M51R	TCACCCATGCCAG	.	86	26	100	0	.	0	0	0	0	0
AKAP1	8165	ucsc.edu;bcgsc.ca	37	17	55197616	55197616	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	AKAP1-227	NM_001242902	exon12	c.G2643A	p.V881V	GGTGGTGTTGATA	.	215	71	233	2	.	1	0	1	0	0
BZRAP1	9256	broad.mit.edu;bcgsc.ca	37	17	56382447	56382447	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	BZRAP1-229	NM_004758	exon30	c.C5519T	p.P1840L	GTCCTGGGTTCCC	.	151	6	136	0	.	0	0	0	0	0
MED13	9969	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	60042511	60042511	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MED13-136	NM_005121	exon20	c.A4700G	p.N1567S	GCAGCATTACTGT	.	252	98	246	1	.	3	2	1	0	0
KCNH6	81033	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	61623068	61623068	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KCNH6-91	NM_030779	exon14	c.A2790G	p.A930A	TCTGGCACCATCC	.	123	51	112	1	.	7	3	4	0	0
NAT9	26151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	72768142	72768142	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NAT9-90	NM_015654	exon6	c.A446C	p.N149T	GGTTCATTTCCTT	.	126	54	108	0	.	25	11	14	0	0
CARD14	79092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	78166392	78166392	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CARD14-231	NM_024110	exon9	c.G1330A	p.D444N	GACAGCGACTGCA	.	203	43	210	0	.	0	0	0	0	0
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	29038453	29038453	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DSG3-98	NM_001944	exon4	c.T262G	p.S88A	CGAATCTCTGGAG	.	108	56	102	0	.	0	0	0	0	0
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1059069	1059069	+	Silent	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ABCA7-98	NM_019112	exon40	c.G5448T	p.G1816G	CCTGGGGATTCCC	.	118	28	116	0	.	38	12	26	0	0
MFSD12	126321	broad.mit.edu;bcgsc.ca	37	19	3546268	3546268	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001042680	exon7	c.C1179T	p.L393L	ACCGATGAGGTCG	.	13	4	32	0	.	124	102	21	1	0
ZNF799	90576	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	12502558	12502558	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF799-74	NM_001080821	exon4	c.G654A	p.T218T	AGTGTGCGTTCTC	.	99	39	160	1	.	0	0	0	0	0
CD97	976	hgsc.bcm.edu;broad.mit.edu	37	19	14517156	14517156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CD97-570	NM_078481	exon15	c.G1835T	p.C612F	TGCGCTGCCGCCT	.	28	15	18	0	.	22	11	11	0	0
IFI30	10437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18288015	18288015	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	IFI30-226	NM_006332	exon5	c.C549T	p.R183R	GGACCGCGGCATG	.	160	34	215	0	.	67	54	13	0	0
ZNF507	22847	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	32873421	32873421	+	Silent	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF507-230	NM_001136156	exon6	c.T2409A	p.S803S	GAAGTCTCATATG	.	202	106	203	2	.	5	2	3	0	0
CEACAM20	125931	broad.mit.edu;bcgsc.ca	37	19	45016957	45016957	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CEACAM20-67	NM_001102600	exon9	c.G1482A	p.P494P	CTCCTTCGGGATG	.	204	7	206	0	.	0	0	0	0	0
FAM83E	54854	broad.mit.edu	37	19	49114033	49114033	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FAM83E-91	NM_017708	exon2	c.C537T	p.R179R	CCAGCGGCGCGTG	.	180	6	191	0	.	6	6	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385790	58385790	+	Missense_Mutation	SNP	G	G	T	rs111727691		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144989	exon3	c.C968A	p.P323H	TCATAAGGTCTTT	.	131	13	108	0	G|0.500;T|0.500	2	2	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385793	58385793	+	Missense_Mutation	SNP	C	C	T	rs113623532		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144989	exon3	c.G965A	p.R322K	TAAGGTCTTTTCC	.	122	12	103	0	C|0.500;T|0.500	1	1	0	0	0
HS1BP3	64342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	20818857	20818857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HS1BP3-91	NM_022460	exon7	c.G1069C	p.A357P	GCCCAGCCACAGC	.	210	93	153	0	.	149	84	65	0	0
CCDC121	79635	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27850548	27850548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CCDC121-68	NM_001142683	exon2	c.T605C	p.L202P	TATTCCAGAAAGA	.	129	39	125	0	.	1	0	1	0	0
ALK	238	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	29420473	29420473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ALK-3833	NM_004304	exon27	c.G4008T	p.Q1336H	AACTTCCTGGTTG	.	82	37	74	0	.	0	0	0	0	0
LOC285033	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	96906416	96906416	+	RNA	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	.	.	.	.	TTCCTTCCCTGCA	.	44	14	32	0	.	0	0	0	0	0
RGPD3	653489	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	107073432	107073432	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RGPD3-23	NM_001144013	exon4	c.C400T	p.L134L	CCTTTAGTTTATA	.	384	132	342	0	.	0	0	0	0	0
RABL2A	11159	broad.mit.edu	37	2	114391751	114391751	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RABL2A-86	NM_013412	exon4	c.G159A	p.T53T	GTCCACGTACGCC	.	215	7	181	0	.	34	33	1	0	0
SCN2A	6326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	166153545	166153545	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SCN2A-142	NM_001040143	exon2	c.A286T	p.K96X	TTGAATAAAGGGA	.	200	105	174	0	.	0	0	0	0	0
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170055306	170055306	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	LRP2-175	NM_004525	exon45	c.T8568C	p.P2856P	ATAAGTAGGGTTT	.	149	49	119	0	.	0	0	0	0	0
PGAP1	80055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197784853	197784853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PGAP1-93	NM_024989	exon2	c.C169A	p.L57M	TTGCCAGTTTCTT	.	56	28	43	0	.	0	0	0	0	0
COL6A3	1293	broad.mit.edu;bcgsc.ca	37	2	238275565	238275565	+	Silent	SNP	C	C	T	rs140699766		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	COL6A3-526	NM_004369	exon11	c.G5265A	p.S1755S	TTCCACCGACTTT	.	266	10	196	1	C|1.000;T|0.000	3	3	0	0	0
FARP2	9855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242407764	242407764	+	Silent	SNP	C	C	G	rs138469271	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FARP2-93	NM_014808	exon18	c.C2103G	p.P701P	CAGCCCCGGGCAC	.	93	36	89	0	C|1.000;T|0.000	1	0	1	0	0
FAM182A	284800	broad.mit.edu	37	20	26061816	26061816	+	RNA	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	.	.	.	.	TTTCTCCTGCTTA	.	140	22	123	0	.	0	0	0	0	0
FRG1B	284802	bcgsc.ca	37	20	29625947	29625947	+	RNA	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FRG1B-22	.	.	.	.	ATGCAATTGGACC	.	157	10	188	6	.	14	14	0	0	0
CHD6	84181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	40143495	40143495	+	Silent	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CHD6-238	NM_032221	exon4	c.G651T	p.T217T	TGGGTTCGTCAGG	.	99	38	92	0	.	3	0	3	0	0
MYBL2	4605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	42328636	42328636	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MYBL2-415	NM_002466	exon7	c.C903T	p.I301I	CCTCATCCCTGCT	.	82	34	92	0	.	0	0	0	0	0
WFDC8	90199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	44181865	44181865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	WFDC8-90	NM_181510	exon5	c.C496A	p.P166T	AAGGTGGACACTC	.	131	51	147	0	.	0	0	0	0	0
BCAS4	55653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	49458324	49458324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	BCAS4-204	NM_198799	exon4	c.C376T	p.H126Y	GTTGGACACCACG	.	250	109	333	0	.	9	6	3	0	0
NTSR1	4923	broad.mit.edu;bcgsc.ca	37	20	61389632	61389632	+	Missense_Mutation	SNP	G	G	A	rs201489051		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NTSR1-524	NM_002531	exon3	c.G931A	p.A311T	GTCATCGCCTTTG	.	201	10	149	0	G|0.999;A|0.000	0	0	0	0	0
URB1	9875	bcgsc.ca	37	21	33757860	33757860	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_014825	exon2	c.A276C	p.E92D	TTCACTTTCAGGT	.	77	32	98	2	.	0	0	0	0	0
POTEH	23784	broad.mit.edu;bcgsc.ca	37	22	16266950	16266950	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POTEH-1	NM_001136213	exon9	c.C1499A	p.T500N	TTCTCAGTGTCAG	.	1342	145	1499	1	.	0	0	0	0	0
CECR2	27443	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	18029082	18029082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CECR2-70	.	.	.	.	GTGGCTGCCCTCC	.	62	30	63	0	.	1	0	1	0	0
ZDHHC8	29801	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20128194	20128194	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZDHHC8-91	NM_001185024	exon6	c.A715T	p.N239Y	TGTGGGAATGTGG	.	32	16	40	0	.	7	7	0	0	0
MKRN2	23609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	12611673	12611673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MKRN2-90	NM_014160	exon3	c.G259A	p.V87I	TCCGAGGTCACTG	.	83	77	76	0	.	2	0	2	0	0
POC1A	25886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52181040	52181040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POC1A-90	NM_015426	exon5	c.G527T	p.S176I	TCCCGGCTGCTCT	.	127	32	150	0	.	0	0	0	0	0
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52637647	52637647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PBRM1-575	NM_018313	exon18	c.C2669A	p.A890E	CTGAGTGCCGGTG	.	32	28	23	0	.	2	1	1	0	0
SLMAP	7871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	57743531	57743531	+	Silent	SNP	A	A	G	rs147270008		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLMAP-90	NM_007159	exon1	c.A153G	p.L51L	AGTGCTATCAAGG	.	282	236	317	2	A|1.000;G|0.000	0	0	0	0	0
THPO	7066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	184090635	184090635	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	THPO-91	NM_000460	exon6	c.T728G	p.I243S	CCGGGGATTTGGT	.	150	49	126	0	.	0	0	0	0	0
EIF4A2	1974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186503770	186503770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EIF4A2-291	NM_001967	exon5	c.G447T	p.Q149H	ACTGCAGGCTGAA	.	149	34	121	0	.	39	32	7	0	0
MUC4	4585	bcgsc.ca	37	3	195505787	195505787	+	Missense_Mutation	SNP	C	C	T	rs11915935		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.G12664A	p.A4222T	GGGTGGCGTGACC	.	376	41	387	16	.	1	1	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507744	195507744	+	Silent	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.T10707G	p.L3569L	GACAGGAAGAGGG	.	81	32	224	16	.	2	2	0	0	0
MUC4	4585	bcgsc.ca	37	3	195507851	195507851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.G10600A	p.A3534T	GCGTGGCGTGACC	.	117	35	516	18	.	0	0	0	0	0
MUC4	4585	bcgsc.ca	37	3	195511874	195511874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MUC4-90	NM_018406	exon2	c.C6577G	p.L2193V	CAGGAAGAGGGGT	.	682	19	541	7	.	0	0	0	0	0
SLC30A9	10463	bcgsc.ca	37	4	42051440	42051440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLC30A9-91	NM_006345	exon9	c.G784T	p.G262C	TATACCGGTTCAG	.	68	4	88	0	.	3	3	0	0	0
TMPRSS11A	339967	bcgsc.ca	37	4	68777112	68777112	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TMPRSS11A-69	NM_182606	exon10	c.A1214T	p.Y405F	TGTGTGTAGACTC	.	163	70	205	0	.	0	0	0	0	0
ZNF622	90441	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16465479	16465479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF622-91	NM_033414	exon1	c.T296C	p.V99A	GCCTGCACGGCCT	.	155	31	148	0	.	22	16	6	0	0
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	16685914	16685914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MYO10-3	NM_012334	exon29	c.T3923G	p.V1308G	GCGTGGACCTGAC	.	56	24	60	0	.	4	2	2	0	0
CDH9	1007	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	26915851	26915851	+	Missense_Mutation	SNP	C	C	T	rs150604531		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CDH9-99	NM_016279	exon3	c.G410A	p.R137Q	ACCTGCCGCCCAG	.	112	37	112	1	C|1.000;T|0.000	0	0	0	0	0
GDNF	2668	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	37834925	37834925	+	Splice_Site	SNP	C	C	A	rs13169425		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GDNF-90	NM_001190469	exon3	c.26-1G>T	.	CGGCACCTGCGCG	.	48	19	82	0	C|1.000;|0.000	0	0	0	0	0
PRRC1	133619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	126860514	126860514	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PRRC1-68	NM_130809	exon3	c.G395C	p.G132A	TATCAGGATTTTC	.	182	83	145	0	.	4	3	1	0	0
MATR3	9782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	138643239	138643239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MATR3-91	NM_018834	exon2	c.G135A	p.M45I	AAGGATGAACCAG	.	198	84	210	0	.	6	3	3	0	0
PCDHB13	56123	broad.mit.edu	37	5	140595249	140595249	+	Silent	SNP	T	T	C	rs144959109	byfrequency;alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PCDHB13-93	NM_018933	exon1	c.T1554C	p.S518S	CAGGTCTCTGGAC	.	89	3	123	1	T|0.999;G|0.001	0	0	0	0	0
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148730494	148730494	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GRPEL2-91	NM_152407	exon4	c.C327T	p.F109F	GAGTTTCTGTAAG	.	81	20	69	0	.	0	0	0	0	0
MDC1	9656	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30681013	30681013	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MDC1-273	NM_014641	exon5	c.G706T	p.A236S	TGGCAGCTGAGGA	.	126	7	126	0	.	3	3	0	0	0
TCP11	6954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	35086064	35086064	+	Silent	SNP	T	T	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TCP11-95	NM_001093728	exon10	c.A1533C	p.T511T	CACTTTTGTTTCC	.	202	87	179	0	.	0	0	0	0	0
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43041648	43041648	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KLC4-94	NM_201523	exon15	c.T1808C	p.M603T	GCAACATGAAGCG	.	128	40	149	0	.	2	2	0	0	0
YIPF3	25844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	43480515	43480515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	YIPF3-90	NM_015388	exon7	c.T764C	p.L255P	GTGGACAGTCCAC	.	189	75	165	0	.	101	66	35	0	0
SNAP91	9892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	84371294	84371294	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SNAP91-23	NM_001242794	exon5	c.T379A	p.Y127N	TACTATAGCGCCT	.	100	59	95	0	.	0	0	0	0	0
SPACA1	81833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	88775941	88775941	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SPACA1-90	NM_030960	exon7	c.C773A	p.P258H	CTACACCTGAGGT	.	39	14	67	0	.	0	0	0	0	0
MDN1	23195	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	90402313	90402313	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MDN1-100	NM_014611	exon63	c.C10436G	p.S3479X	CCTCCTGAGCGCT	.	208	44	180	1	.	0	0	0	0	0
HACE1	57531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	105298839	105298839	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HACE1-663	NM_020771	exon3	c.T164A	p.F55Y	ACATCAAATTTTG	.	105	61	128	0	.	0	0	0	0	0
SOBP	55084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	107827527	107827527	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SOBP-91	NM_018013	exon3	c.C317A	p.A106D	GGCTTGCCACTGG	.	89	16	96	0	.	0	0	0	0	0
NUS1	116150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	118015319	118015319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NUS1-108	NM_138459	exon3	c.G667A	p.V223I	TTGGATGTAGATA	.	87	50	125	0	.	3	2	1	0	0
GPR126	57211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	142691578	142691578	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	GPR126-91	NM_198569	exon4	c.C717T	p.V239V	ACCTGTCAAAGAA	.	38	8	65	0	.	0	0	0	0	0
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	160445676	160445676	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	IGF2R-118	NM_000876	exon5	c.T586C	p.Y196H	GGTGCCTACTTGG	.	172	47	198	0	.	0	0	0	0	0
CARD11	84433	broad.mit.edu	37	7	2959068	2959068	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CARD11-870	NM_032415	exon18	c.C2448T	p.C816C	CCGCGCGCACAGC	.	290	8	226	0	.	2	2	0	0	0
CCDC129	223075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31682718	31682718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001257968	exon11	c.C1812A	p.D604E	GCAGGACAGTTTT	.	138	61	136	0	.	0	0	0	0	0
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	35733937	35733937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HERPUD2-93	NM_022373	exon2	c.G4A	p.D2N	TTTGGTCCATGGT	.	166	62	156	0	.	5	3	2	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47853600	47853600	+	Missense_Mutation	SNP	C	C	T	rs147316882		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PKD1L1-145	NM_138295	exon48	c.G7102A	p.G2368R	TTCCTCCAAGAGC	.	51	26	39	0	C|1.000;T|0.000	0	0	0	0	0
VWC2	375567	hgsc.bcm.edu	37	7	49815193	49815193	+	Silent	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	VWC2-514	NM_198570	exon2	c.C162T	p.D54D	TCGGGACGGCCCG	.	8	7	5	0	.	0	0	0	0	0
RHBDD2	57414	broad.mit.edu;bcgsc.ca	37	7	75511278	75511278	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RHBDD2-90	NM_001040456	exon2	c.G310A	p.V104M	TTCACCGTGATCT	.	399	22	337	1	.	82	81	1	0	0
POMZP3	22932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	76240801	76240801	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POMZP3-90	NM_012230	exon6	c.C545A	p.S182Y	GACGTGGACCACT	.	382	118	373	1	.	18	10	8	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	82585266	82585266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PCLO-29	NM_014510	exon5	c.A5003G	p.K1668R	ATTGTTTTAAATC	.	99	44	92	0	.	0	0	0	0	0
ANKIB1	54467	ucsc.edu;bcgsc.ca	37	7	91957150	91957150	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ANKIB1-432	NM_019004	exon5	c.T723C	p.I241I	GCTTATTGTGGAA	.	67	30	56	1	.	1	0	1	0	0
PRKAR2B	5577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	106799967	106799967	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PRKAR2B-1083	NM_002736	exon11	c.T1197A	p.Y399X	TACCTATGAAGAA	.	114	42	111	0	.	0	0	0	0	0
ADCK2	90956	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140380887	140380887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ADCK2-333	NM_052853	exon4	c.G1255T	p.D419Y	CCCGTGGACTTGA	.	287	122	278	0	.	31	16	15	0	0
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101276971	101276971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RNF19A-229	NM_015435	exon7	c.C1234T	p.R412W	AATTCCGTTTGTG	.	98	23	100	0	.	9	7	2	0	0
RSPO2	340419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	108970372	108970372	+	Silent	SNP	T	T	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RSPO2-231	NM_178565	exon5	c.A552G	p.T184T	CAGTATTGTGTCT	.	239	112	217	0	.	0	0	0	0	0
MROH5	389690	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142486196	142486196	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	.	.	.	.	GAAGCAGGTGGAC	.	133	71	130	0	.	0	0	0	0	0
EEF1D	1936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	144661995	144661995	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EEF1D-228	NM_001130053	exon10	c.G1911C	p.Q637H	GACACTCTGCACC	.	112	42	99	0	.	0	0	0	0	0
STOML2	30968	broad.mit.edu	37	9	35101165	35101165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	STOML2-90	NM_013442	exon7	c.G691T	p.A231S	TTTCTGCTTCGGA	.	108	7	89	0	.	123	121	2	0	0
MELK	9833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36583634	36583634	+	Silent	SNP	A	A	G	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	MELK-760	NM_001256688	exon3	c.A69G	p.A23A	CTTTGCAAAGGTC	.	31	13	34	0	.	0	0	0	0	0
ACOT9	23597	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	23723676	23723676	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ACOT9-133	NM_001037171	exon13	c.C969T	p.F323F	CATAAGGAAACCA	.	66	48	130	2	.	5	2	3	0	0
POLA1	5422	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	24744126	24744126	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	POLA1-229	NM_016937	exon13	c.T1328A	p.I443K	TTGAGATACCTGA	.	34	26	99	0	.	0	0	0	0	0
OPHN1	4983	bcgsc.ca	37	X	67283721	67283721	+	Silent	SNP	G	G	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	OPHN1-110	NM_002547	exon21	c.C2133T	p.P711P	GGGCCGGGGAGCT	.	68	62	28	1	.	0	0	0	0	0
SLC25A53	401612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	103349337	103349337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001012755	exon2	c.G604A	p.G202S	CCAGGCCATCCTG	.	84	12	66	0	.	0	0	0	0	0
COL4A5	1287	broad.mit.edu;bcgsc.ca	37	X	107938134	107938134	+	Missense_Mutation	SNP	G	G	A	rs104886424		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	COL4A5-133	NM_000495	exon49	c.G4786A	p.G1596S	TGGATTGGTTATT	.	219	9	184	0	.	12	11	1	0	0
CASZ1	54897	broad.mit.edu	37	1	10699156	10699158	+	In_Frame_Del	DEL	TCG	TCG	-	rs201089181	alternate_allele	TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TCG	TCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CASZ1-113	NM_001079843	exon21	c.5121_5123del	p.1707_1708del	TCGTCCTCGTCGT	.	6	2	28	0	-|0.032;TCGTCG|0.968	0	0	0	0	0
RCAN3	11123	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	24840954	24840954	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RCAN3-90	NM_001251980	exon1	c.92delA	p.E31fs	.	.	264	121	325	0	.	0	0	0	0	0
DNALI1	7802	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	38027791	38027793	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DNALI1-154	NM_003462	exon5	c.752_754del	p.251_252del	.	.	110	56	119	0	.	0	0	0	0	0
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	47144193	47144194	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_014774	exon11	c.1427_1428del	p.476_476del	.	.	56	21	89	0	.	0	0	0	0	0
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	112999419	112999419	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CTTNBP2NL-92	NM_018704	exon6	c.1305delG	p.K435fs	.	.	142	88	120	0	.	0	0	0	0	0
ZNF648	127665	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	182026912	182026918	+	Frame_Shift_Del	DEL	TTCCTCT	TTCCTCT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTCCTCT	TTCCTCT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ZNF648-91	NM_001009992	exon2	c.228_234del	p.76_78del	.	.	160	31	121	0	.	0	0	0	0	0
SUFU	51684	broad.mit.edu	37	10	104263976	104263982	+	Frame_Shift_Del	DEL	CCCCCGG	CCCCCGG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CCCCCGG	CCCCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SUFU-2246	NM_001178133	exon1	c.67_73del	p.23_25del	ACTGCCCCCCCGG	.	12	10	12	0	.	0	0	0	0	0
PDCD11	22984	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	105205187	105205189	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TTC	TTC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PDCD11-275	NM_014976	exon36	c.5497_5499del	p.1833_1833del	.	.	209	56	218	0	.	0	0	0	0	0
CD6	923	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	60778597	60778605	+	In_Frame_Del	DEL	AGTCACTAT	AGTCACTAT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AGTCACTAT	AGTCACTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	CD6-227	NM_006725	exon6	c.1140_1148del	p.380_383del	.	.	171	38	230	0	.	0	0	0	0	0
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62491416	62491416	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HNRNPUL2-22	NM_001079559	exon3	c.721delG	p.E241fs	.	.	157	95	215	0	.	0	0	0	0	0
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	93797512	93797529	+	In_Frame_Del	DEL	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	ATTCAGGGACACGGAATG	ATTCAGGGACACGGAATG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	HEPHL1-71	NM_001098672	exon4	c.644_661del	p.215_221del	.	.	72	18	141	0	.	0	0	0	0	0
ARID2	196528	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	46205220	46205221	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ARID2-100	NM_152641	exon4	c.304_305del	p.102_102del	.	.	82	33	85	0	.	0	0	0	0	0
KCNH3	23416	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	49951017	49951018	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KCNH3-90	NM_012284	exon14	c.2627_2628del	p.876_876del	.	.	126	51	131	0	.	0	0	0	0	0
CCDC42B	387885	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	113593105	113593106	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144872	exon6	c.731_732del	p.244_244del	.	.	80	35	62	0	.	0	0	0	0	0
PXN	5829	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	120653013	120653013	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PXN-660	NM_001243756	exon7	c.1039delC	p.Q347fs	.	.	68	28	84	0	.	0	0	0	0	0
FANCI	55215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	89801970	89801970	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FANCI-92	NM_001113378	exon3	c.120delA	p.G40fs	.	.	102	46	82	0	.	0	0	0	0	0
LRRC37B	114659	hgsc.bcm.edu;bcgsc.ca	37	17	30349520	30349520	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	LRRC37B-92	NM_052888	exon1	c.1355delC	p.A452fs	.	.	268	45	231	0	.	0	0	0	0	0
NPTX1	4884	hgsc.bcm.edu;bcgsc.ca	37	17	78449367	78449367	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NPTX1-90	NM_002522	exon2	c.596delT	p.V199fs	.	.	130	55	98	0	.	0	0	0	0	0
EPS15L1	58513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	16548668	16548669	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	EPS15L1-95	NM_021235	exon5	c.221_222del	p.74_74del	.	.	113	34	103	0	.	0	0	0	0	0
C22orf42	150297	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	32555017	32555019	+	In_Frame_Del	DEL	CTG	CTG	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CTG	CTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	C22orf42-92	NM_001010859	exon1	c.184_186del	p.62_62del	.	.	274	49	290	0	.	0	0	0	0	0
RPSA	3921	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	39453553	39453556	+	Splice_Site	DEL	GTAT	GTAT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	GTAT	GTAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RPSA-278	.	.	.	.	.	.	23	17	39	0	.	0	0	0	0	0
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68777111	68777111	+	Nonsense_Mutation	DEL	G	G	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TMPRSS11A-69	NM_182606	exon10	c.1215delC	p.Y405X	.	.	163	70	206	0	.	0	0	0	0	0
TMPRSS11A	339967	hgsc.bcm.edu	37	4	68777111	68777112	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	TMPRSS11A-69	NM_182606	exon10	c.1214_1215del	p.405_405del	.	.	165	48	207	0	.	0	0	0	0	0
DSP	1832	hgsc.bcm.edu;bcgsc.ca	37	6	7562996	7562996	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	DSP-518	NM_004415	exon5	c.709delA	p.K237fs	.	.	103	29	113	0	.	0	0	0	0	0
SLC17A3	10786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	25850278	25850278	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SLC17A3-91	NM_001098486	exon9	c.1121delT	p.L374X	.	.	99	41	95	0	.	0	0	0	0	0
ARID1B	57492	broad.mit.edu	37	6	157099342	157099342	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	ARID1B-154	NM_017519	exon1	c.279delC	p.H93fs	CCACCACCACCAC	.	6	2	21	0	.	0	0	0	0	0
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	82579041	82579041	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	PCLO-29	NM_014510	exon6	c.10863delA	p.K3621fs	.	.	111	46	87	0	.	0	0	0	0	0
HECTD4	283450	broad.mit.edu	37	12	112623045	112623046	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001109662	exon61	c.9323_9324insG	p.A3108fs	GCCGCCGCCCCCC	.	14	6	12	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47163966	47163967	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	SETD2-1273	NM_014159	exon3	c.2160_2161insG	p.G720fs	.	.	49	37	71	0	.	0	0	0	0	0
STAB1	23166	hgsc.bcm.edu	37	3	52555670	52555671	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	STAB1-139	NM_015136	exon57	c.6117_6118insT	p.C2039fs	.	.	92	14	108	0	.	0	0	0	0	0
KLC4	89953	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	43041642	43041643	+	Frame_Shift_Ins	INS	-	-	CAACACGA	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	KLC4-94	NM_201523	exon15	c.1802_1803insCAACACGA	p.S601fs	.	.	126	24	146	0	.	0	0	0	0	0
RBM33	155435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	155534581	155534582	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	RBM33-23	NM_053043	exon13	c.2118_2119insA	p.S706fs	.	.	165	69	190	0	.	0	0	0	0	0
FUT10	84750	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	33246682	33246683	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	FUT10-92	NM_032664	exon4	c.1011_1012insT	p.I337fs	.	.	311	126	301	0	.	0	0	0	0	0
ZNF814	730051	hgsc.bcm.edu	37	19	58385798	58385799	+	Missense_Mutation	DNP	CC	CC	TT	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	.	NM_001144989	exon3	c.G959A	p.G320E	CTTTTCCCAGTGT	.	119.0	13.0	96.0	0.0	.	0	0	0	0	0
NEUROD6	63974	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	31378439	31378440	+	Missense_Mutation	DNP	TT	TT	AA	novel		TCGA-B9-A44B-01A-11D-A25F-10	TCGA-B9-A44B-10A-01D-A25F-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	88e35d25-d98d-4576-8ebe-1cd74010ecd8	5d028c99-a58c-419a-b566-610dcba9cd5c	.	NEUROD6-92	NM_022728	exon2	c.A443T	p.E148V	AGAATTTCAGAAA	.	97	36	80	1	.	0	0	0	0	0
