Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
RER1	11079	broad.mit.edu	37	1	2332308	2332308	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	RER1-90	NM_007033	exon5	c.C299G	p.S100W	GTCCTTCGCTACC	.	183	4	184	0	.	354	354	0	0	0
NFIA	4774	broad.mit.edu	37	1	61554264	61554264	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	NFIA-92	NM_001145512	exon3	c.T606C	p.S202S	ATGCTCTAATCCA	.	108	3	135	0	.	17	17	0	0	0
TMED5	50999	ucsc.edu	37	1	93620447	93620447	+	Splice_Site	SNP	T	T	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TMED5-91	NM_016040	exon5	c.472-2A>T	.	GATTCCTGGAGAT	.	123	1	165	0	.	0	0	0	0	0
ANKRD35	148741	bcgsc.ca	37	1	145555716	145555716	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ANKRD35-95	NM_144698	exon2	c.C64A	p.Q22K	CATGATCAGAAGC	.	102	6	62	0	.	0	0	0	0	0
FMOD	2331	broad.mit.edu	37	1	203311609	203311609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	FMOD-137	NM_002023	exon3	c.C993A	p.S331R	GAAGCTGCTGATG	.	58	6	38	0	.	0	0	0	0	0
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	108427534	108427534	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SORCS1-153	NM_001206572	exon17	c.A2216G	p.N739S	TGGCCATTGCTGT	.	34	31	36	0	.	0	0	0	0	0
OR52J3	119679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5068288	5068288	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	OR52J3-71	NM_001001916	exon1	c.A533T	p.H178L	TAGCCCATTCCTA	.	117	112	163	0	.	0	0	0	0	0
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117866403	117866403	+	Missense_Mutation	SNP	G	G	A	rs145975996		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IL10RA-91	NM_001558	exon6	c.G788A	p.R263Q	GGCGCCGAAAGAA	.	42	20	43	0	G|1.000;A|0.000	9	9	0	0	0
ART4	420	broad.mit.edu	37	12	14993941	14993941	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ART4-90	NM_021071	exon2	c.G291A	p.W97X	TTTTTGCCACATC	.	439	6	311	1	.	0	0	0	0	0
TDG	6996	hgsc.bcm.edu	37	12	104378526	104378526	+	Splice_Site	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TDG-661	NM_003211	exon8	c.793-1G>T	.	ATTCTAGCTCTGC	.	76	4	50	0	.	0	0	0	0	0
ATXN2	6311	hgsc.bcm.edu	37	12	112036797	112036797	+	Silent	SNP	C	C	T	rs4098854		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ATXN2-136	NM_002973	exon1	c.G522A	p.Q174Q	CTGCTGCTGCTGC	.	5	3	2	1	C|0.429;T|0.571	421	379	41	1	0
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	22088516	22088516	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	EFHA1-90	NM_152726	exon7	c.G639A	p.V213V	AGTTTTCACTGTC	.	93	9	98	0	.	97	94	3	0	0
KL	9365	hgsc.bcm.edu;broad.mit.edu	37	13	33591068	33591068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KL-155	NM_004795	exon1	c.G490C	p.V164L	GCGGGCGTCCCCA	.	24	10	24	0	.	53	1	52	0	0
COX8C	341947	hgsc.bcm.edu	37	14	93813725	93813725	+	Silent	SNP	G	G	T	rs201840112		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	COX8C-226	NM_182971	exon1	c.G111T	p.R37R	CCAGCGGCCCCTG	.	13	12	4	2	G|0.996;T|0.004	0	0	0	0	0
AKT1	207	hgsc.bcm.edu	37	14	105237141	105237141	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	AKT1-9189	NM_005163	exon13	c.C1304G	p.T435S	TACCTGGTGTCAG	.	36	2	44	0	.	144	144	0	0	0
PKD1	5310	hgsc.bcm.edu	37	16	2168405	2168405	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PKD1-91	NM_000296	exon5	c.C588T	p.S196S	TGAAAAGGACACT	.	37	8	27	0	.	51	48	3	0	0
RANBP10	57610	hgsc.bcm.edu;broad.mit.edu	37	16	67840335	67840335	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	RANBP10-227	NM_020850	exon1	c.G105A	p.L35L	CCGGCTCAGCTCC	.	18	6	14	0	.	15	9	6	0	0
ZFHX3	463	broad.mit.edu	37	16	72984648	72984648	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZFHX3-72	NM_006885	exon3	c.T2936G	p.V979G	CCCATCACCGCCT	.	113	8	69	1	.	7	6	0	0	1
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	793	114	496	71	.	97	12	85	0	0
AKAP10	11216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	19861611	19861611	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	AKAP10-226	NM_007202	exon4	c.T593C	p.F198S	GTTAAAAAAGACG	.	99	49	73	0	.	26	17	9	0	0
SLC14A1	6563	bcgsc.ca	37	18	43319599	43319599	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SLC14A1-515	NM_001146037	exon7	c.G1086A	p.W362X	CACCTGGCAAACC	.	91	5	124	0	.	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9065718	9065718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MUC16-566	NM_024690	exon3	c.C21728A	p.S7243Y	CTCAGGGAGGAAA	.	220	16	198	0	.	0	0	0	0	0
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53958709	53958709	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZNF761-91	NM_001008401	exon7	c.T948A	p.H316Q	AAGACATAGGATA	.	114	97	114	0	.	0	0	0	0	0
ZNF761	388561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53958711	53958711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ZNF761-91	NM_001008401	exon7	c.G950A	p.R317K	GACATAGGATAAT	.	114	98	115	0	.	0	0	0	0	0
XPO1	7514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	61709536	61709536	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	XPO1-229	NM_003400	exon23	c.C2951T	p.S984L	AAGGCCGACTTAA	.	128	12	156	0	.	123	107	16	0	0
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	141643776	141643776	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	LRP1B-311	NM_018557	exon24	c.C3895G	p.Q1299E	AACTTTGATTGAA	.	97	80	97	0	.	0	0	0	0	0
ARL6IP6	151188	broad.mit.edu	37	2	153591621	153591621	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ARL6IP6-90	NM_152522	exon3	c.C568T	p.L190F	ACTCCTCTTTCAC	.	134	5	179	0	.	34	33	1	0	0
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	186671400	186671400	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	FSIP2-90	NM_173651	exon17	c.T17634C	p.D5878D	AGAAGATGTTATT	.	62	60	89	1	.	0	0	0	0	0
ACADL	33	bcgsc.ca	37	2	211057527	211057527	+	Splice_Site	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACADL-90	NM_001608	exon11	c.1199+1G>C	.	TACTTACTTTGCA	.	67	63	63	0	.	0	0	0	0	0
GGTLC1	92086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	23967129	23967129	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	GGTLC1-23	NM_178311	exon2	c.G120A	p.L40L	CACAGACAGGTGA	.	101	56	56	0	.	0	0	0	0	0
MATN4	8785	broad.mit.edu	37	20	43927153	43927153	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MATN4-90	NM_003833	exon7	c.C1083T	p.F361F	TAGCTCGAAGTTT	.	236	7	83	0	.	0	0	0	0	0
OGFR	11054	hgsc.bcm.edu	37	20	61443716	61443716	+	Missense_Mutation	SNP	G	G	A	rs41309371		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	OGFR-68	NM_007346	exon7	c.G749A	p.R250Q	GGGTGCGGCAGAG	.	18	10	6	2	G|0.989;A|0.011	112	76	36	0	0
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	19685347	19685347	+	Silent	SNP	T	T	G	rs111276490	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TMPRSS15-160	NM_002772	exon18	c.A2080C	p.R694R	GGATTCTGAACCG	.	114	107	119	0	T|0.500;C|0.500	0	0	0	0	0
TXNRD2	10587	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	19870863	19870863	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	TXNRD2-92	.	.	.	.	GTCACCAATGGCG	.	85	74	102	0	.	52	1	51	0	0
CCDC116	164592	broad.mit.edu;bcgsc.ca	37	22	21989095	21989095	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	CCDC116-92	NM_152612	exon4	c.C743G	p.S248X	TGGGCTCAAGCTC	.	165	7	160	0	.	0	0	0	0	0
SH3BP1	23616	hgsc.bcm.edu	37	22	38051328	38051328	+	Silent	SNP	C	C	A	rs61678571	alternate_allele	TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SH3BP1-90	NM_018957	exon18	c.C1743A	p.S581S	GGTCTCCGGCTCC	.	25	2	16	0	C|0.984;T|0.016	3	3	0	0	0
OXTR	5021	ucsc.edu;bcgsc.ca	37	3	8809676	8809676	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	OXTR-68	NM_000916	exon3	c.C198T	p.T66T	GCGTGTGGTGCGC	.	20	4	22	0	.	0	0	0	0	0
CCR5	1234	broad.mit.edu;bcgsc.ca	37	3	46415326	46415326	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	CCR5-993	NM_000579	exon3	c.C933T	p.F311F	AGTCTTCTTCCAA	.	283	8	300	0	.	3	3	0	0	0
ACTL6A	86	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	179304341	179304341	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACTL6A-91	NM_004301	exon13	c.G1130A	p.R377Q	GTATGCGGTTGAA	.	61	53	75	0	.	2	0	2	0	0
SH3BP2	6452	hgsc.bcm.edu	37	4	2824707	2824707	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SH3BP2-514	NM_001145856	exon3	c.T353C	p.F118S	ACTACTTCAAGAG	.	34	2	26	0	.	5	5	0	0	0
MAML3	55534	hgsc.bcm.edu	37	4	140811129	140811129	+	Silent	SNP	T	T	C	rs62344941		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	MAML3-455	NM_018717	exon2	c.A1461G	p.Q487Q	TTGCTGTTGCTGT	.	18	3	27	1	.	2	2	0	0	0
HAND2	9464	broad.mit.edu	37	4	174449979	174449979	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	HAND2-91	NM_021973	exon1	c.G462A	p.L154L	GGCCAGCAGGTCC	.	86	4	102	0	.	0	0	0	0	0
KLHL3	26249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	136963990	136963990	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KLHL3-90	NM_017415	exon13	c.C1587T	p.N529N	ACCTGCGTTGCGC	.	260	90	145	0	.	0	0	0	0	0
PCDHGA1	56114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140711928	140711928	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PCDHGA1-137	NM_018912	exon1	c.G1677A	p.A559A	CAACGCGCCCGAG	.	431	204	320	0	.	6	4	2	0	0
DRD1	1812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	174870046	174870046	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	DRD1-93	NM_000794	exon2	c.C57T	p.D19D	AGAGAAGTCCCTC	.	190	77	122	0	.	0	0	0	0	0
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	42657391	42657391	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	UBR2-94	NM_015255	exon46	c.G5109A	p.E1703E	TGGGGAGACCGAC	.	393	351	495	0	.	48	0	48	0	0
DOPEY1	23033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	83862077	83862077	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	DOPEY1-155	NM_015018	exon30	c.A6120G	p.L2040L	GACATTACTCTCT	.	66	4	62	0	.	0	0	0	0	0
USP45	85015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	99930682	99930682	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	USP45-637	NM_001080481	exon8	c.G792T	p.E264D	TTCAGTCTCCTTC	.	86	80	100	0	.	2	0	2	0	0
HOXA5	3202	broad.mit.edu	37	7	27182685	27182685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	HOXA5-514	NM_019102	exon1	c.G542A	p.R181H	AGCTTGCGCATCC	.	459	5	275	0	.	18	18	0	0	0
C7orf41	222166	broad.mit.edu	37	7	30197075	30197075	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	C7orf41-90	NM_152793	exon3	c.G307A	p.D103N	GATGCAGATGACG	.	492	7	297	0	.	39	38	0	0	1
IRF5	3663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	128587532	128587532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	IRF5-226	NM_001098629	exon6	c.C730T	p.P244S	AGCCTGCCCCCTG	.	54	23	40	0	.	84	47	37	0	0
PODXL	5420	hgsc.bcm.edu	37	7	131241029	131241029	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	PODXL-136	NM_001018111	exon1	c.C90G	p.P30P	CTGGGAGGGCGAC	.	7	3	5	0	.	0	0	0	0	0
KIAA1429	25962	broad.mit.edu	37	8	95503873	95503873	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KIAA1429-92	NM_015496	exon22	c.A5073G	p.S1691S	ATTGCCTGAAAAC	.	142	3	153	0	.	39	38	1	0	0
BAAT	570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	104125282	104125282	+	Missense_Mutation	SNP	C	C	T	rs141722672		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	BAAT-228	NM_001127610	exon4	c.G685A	p.V229I	CCCCAACGCCTGA	.	71	26	91	0	C|0.999;T|0.001	1	1	0	0	0
ADAMTSL2	9719	hgsc.bcm.edu	37	9	136419613	136419613	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ADAMTSL2-91	NM_014694	exon10	c.C1074T	p.A358A	CGGGGCCGGGCTG	.	4	4	5	0	.	2	0	2	0	0
SHROOM4	57477	hgsc.bcm.edu	37	X	50350698	50350698	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SHROOM4-131	NM_020717	exon6	c.G3444A	p.E1148E	CTCCTCCTCCTCT	.	23	6	15	1	.	11	11	0	0	0
COL4A6	1288	broad.mit.edu	37	X	107434729	107434729	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	COL4A6-199	NM_001847	exon19	c.A1218G	p.P406P	CAGCCCTGGAAAT	.	218	5	242	0	.	0	0	0	0	0
SCAF11	9169	broad.mit.edu	37	12	46320707	46320708	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SCAF11-93	NM_004719	exon11	c.2776_2777del	p.926_926del	CTCCTTTCTCTCT	.	498	11	272	0	.	0	0	0	0	0
ACADL	33	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	211057526	211057526	+	Splice_Site	DEL	A	A	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACADL-90	NM_001608	exon11	c.1199+2T>-	.	.	.	66	63	65	0	.	0	0	0	0	0
ACADL	33	hgsc.bcm.edu	37	2	211057526	211057527	+	Splice_Site	DEL	AC	AC	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	ACADL-90	.	.	.	.	.	.	67	34	67	0	.	0	0	0	0	0
SETD2	29072	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	47162849	47162850	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	SETD2-1273	NM_014159	exon3	c.3276_3277del	p.1092_1093del	.	.	141	121	167	0	.	0	0	0	0	0
KL	9365	bcgsc.ca	37	13	33591076	33591077	+	Missense_Mutation	DNP	CC	CC	TG	novel		TCGA-BQ-5891-01A-11D-1589-08	TCGA-BQ-5891-11A-01D-1589-08	CC	CC	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	37d4ff42-0161-4f83-bd6f-13eb19d4eabf	28824279-2be9-45db-867a-b165d8191d0c	.	KL-155	NM_004795	exon1	c.C499G	p.R167G	CCCAACCGCGAGG	.	15	4	21	0	.	0	0	0	0	0
