Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65344759	65344759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	JAK1-3900	NM_002227	exon4	c.G278A	p.R93H	ATGGTGCGATTTG	.	45	25	53	0	.	137	95	42	0	0
ARHGAP29	9411	bcgsc.ca	37	1	94696978	94696978	+	Missense_Mutation	SNP	C	C	T	rs200189126		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ARHGAP29-296	NM_004815	exon2	c.G190A	p.E64K	TGGCTTCTTTCAA	.	74	18	90	1	.	21	21	0	0	0
SNX7	51375	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	99150445	99150445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SNX7-229	NM_015976	exon2	c.C185A	p.A62D	AGGATGCCTCATT	.	104	37	105	0	.	0	0	0	0	0
ANKRD35	148741	bcgsc.ca	37	1	145560900	145560900	+	Missense_Mutation	SNP	G	G	A	rs202165652		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANKRD35-95	NM_144698	exon9	c.G757A	p.V253I	AGGCTAGTCCAGC	.	101	21	134	0	.	0	0	0	0	0
NTRK1	4914	broad.mit.edu	37	1	156837966	156837966	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	NTRK1-1393	NM_001012331	exon5	c.C499A	p.L167M	GAGGGACTGGGCG	.	154	4	104	0	.	0	0	0	0	0
FCGR2A	2212	bcgsc.ca	37	1	161480669	161480669	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FCGR2A-91	NM_001136219	exon5	c.T665G	p.V222G	TGGCTGTGGTCAT	.	260	35	238	1	.	2	2	0	0	0
PRRC2C	23215	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	171501662	171501662	+	Silent	SNP	A	A	C	rs14798	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_015172	exon12	c.A1429C	p.R477R	GAACAAAGGAAGG	.	14	14	21	1	A|1.000;T|0.000	128	8	119	0	1
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	173505010	173505010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_178527	exon15	c.C1734A	p.F578L	TTCCAAGAAAGTT	.	113	29	77	0	.	0	0	0	0	0
PRG4	10216	broad.mit.edu	37	1	186276981	186276981	+	Silent	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PRG4-91	NM_005807	exon7	c.A2130G	p.K710K	CCCTAAAGGGACT	.	230	5	166	0	.	0	0	0	0	0
PTGS2	5743	hgsc.bcm.edu	37	1	186649374	186649374	+	Missense_Mutation	SNP	T	T	C	rs199946406		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PTGS2-227	NM_000963	exon1	c.A49G	p.T17A	CACCTGTATGGCT	.	6	6	6	1	.	0	0	0	0	0
AKT3	10000	hgsc.bcm.edu	37	1	243668589	243668589	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	AKT3-1423	NM_005465	exon13	c.T1402C	p.F468L	GAGGGAAATGCGG	.	57	3	95	0	.	35	35	0	0	0
OR13G1	441933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	247835611	247835611	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR13G1-69	NM_001005487	exon1	c.G733C	p.V245L	GGGTCACCACTGT	.	122	32	122	0	.	0	0	0	0	0
PIP4K2A	5305	bcgsc.ca	37	10	22856802	22856802	+	Missense_Mutation	SNP	C	C	T	rs201266267		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PIP4K2A-665	NM_005028	exon6	c.G656A	p.R219K	GCTTCTCTAGCCA	.	115	20	177	1	.	36	36	0	0	0
SVIL	6840	bcgsc.ca	37	10	29813511	29813511	+	Missense_Mutation	SNP	A	A	G	rs201719880		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SVIL-96	NM_021738	exon14	c.T2476C	p.S826P	GCTGGGACAATTT	.	138	32	157	8	.	30	30	0	0	0
OR13A1	79290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	45799786	45799786	+	Missense_Mutation	SNP	C	C	T	rs200530280	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR13A1-68	NM_001004297	exon4	c.G85A	p.E29K	TGAACTCGGTTAC	.	84	38	95	0	C|0.999;A|0.001	0	0	0	0	0
AGAP9	642517	broad.mit.edu	37	10	47207813	47207813	+	Missense_Mutation	SNP	T	T	C	rs79933604		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_001190810	exon4	c.A395G	p.H132R	CTTACATGGTTTG	.	80	3	40	0	T|1.000;|0.000	0	0	0	0	0
ADAMTS14	140766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	72517740	72517740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ADAMTS14-232	NM_139155	exon20	c.G2969T	p.G990V	GAGAGGGCATCCA	.	138	46	122	1	.	0	0	0	0	0
MUC2	4583	hgsc.bcm.edu	37	11	1092966	1092966	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MUC2-90	NM_002457	exon30	c.C4785A	p.T1595T	CCCAACCCCAACA	.	30	5	2	0	.	0	0	0	0	0
LOC338651	0	broad.mit.edu	37	11	1619504	1619504	+	RNA	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	.	.	.	.	GGTGGAGCAGGTA	.	232	5	218	1	.	1	1	0	0	0
OR52N4	390072	bcgsc.ca	37	11	5776805	5776805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR52N4-2	NM_001005175	exon1	c.G835T	p.V279L	ATCATTGTAGCCA	.	144	16	186	0	.	0	0	0	0	0
PPFIBP2	8495	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	7618800	7618800	+	Missense_Mutation	SNP	C	C	G	rs17851928	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PPFIBP2-273	NM_003621	exon5	c.C382G	p.L128V	AGTGTCCTCACAG	.	19	9	33	0	.	0	0	0	0	0
TTC17	55761	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	43380551	43380551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TTC17-95	NM_018259	exon1	c.G47A	p.C16Y	CGCCTTGCTCCGG	.	20	10	25	0	.	2	1	1	0	0
PICALM	8301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	85714416	85714416	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PICALM-659	NM_007166	exon9	c.G886T	p.A296S	TGCTTGCAGCTGT	.	99	27	74	0	.	0	0	0	0	0
USP28	57646	broad.mit.edu	37	11	113679909	113679909	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	USP28-706	NM_020886	exon17	c.C2040A	p.Y680X	CTGAATGTAATGC	.	568	7	591	0	.	12	12	0	0	0
OR8G2	26492	broad.mit.edu	37	11	124095997	124095997	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_001007249	exon1	c.C600A	p.L200L	GGGGCTCTCCTGC	.	249	5	268	0	.	0	0	0	0	0
MLL2	8085	hgsc.bcm.edu	37	12	49427265	49427265	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MLL2-612	NM_003482	exon39	c.A11223G	p.Q3741Q	CTGCTGTTGCTGC	.	24	2	34	0	.	25	7	18	0	0
LRP1	4035	broad.mit.edu	37	12	57566959	57566959	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	LRP1-596	NM_002332	exon21	c.C3172A	p.P1058T	ACGAGGCCCCCTG	.	37	5	83	1	.	0	0	0	0	0
ZCCHC8	55596	bcgsc.ca	37	12	122958214	122958214	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZCCHC8-90	NM_017612	exon14	c.A1954C	p.T652P	TGGCCGTTGAAGG	.	208	29	313	2	.	36	36	0	0	0
SPATA13	221178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	24825881	24825881	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SPATA13-229	NM_001166271	exon4	c.C2045A	p.A682D	TGCCTGCTCACCA	.	118	49	117	0	.	4	3	1	0	0
SHISA2	387914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	26620708	26620708	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SHISA2-69	NM_001007538	exon2	c.G831C	p.Q277H	GGGGGACTGAATC	.	85	30	87	0	.	1	1	0	0	0
TTBK2	146057	bcgsc.ca	37	15	43132600	43132600	+	Missense_Mutation	SNP	A	A	C	rs141523080		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TTBK2-338	NM_173500	exon4	c.T249G	p.C83W	CCTCCCACAGCCA	.	132	26	187	0	.	1	1	0	0	0
DENND4A	10260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	65983020	65983020	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DENND4A-229	NM_001144823	exon23	c.G3909A	p.V1303V	AAGTCTCACTGGC	.	100	29	133	0	.	8	4	4	0	0
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	75692465	75692465	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SIN3A-230	NM_001145358	exon12	c.G1770A	p.S590S	AGACCACGAAGGG	.	87	32	86	0	.	7	3	4	0	0
ZNF598	90850	hgsc.bcm.edu	37	16	2059674	2059674	+	Missense_Mutation	SNP	T	T	C	rs71384660		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZNF598-432	NM_178167	exon2	c.A74G	p.E25G	CCGCCTTCCCGCT	.	2	2	0	0	T|0.007;C|0.993	10	0	10	0	0
PKD1	5310	broad.mit.edu	37	16	2142592	2142592	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PKD1-91	NM_001009944	exon39	c.T11158G	p.S3720A	CCTCAGACCTGCC	.	27	11	38	6	.	5	4	1	0	0
NLRC3	197358	hgsc.bcm.edu	37	16	3613197	3613197	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	NLRC3-96	NM_178844	exon5	c.C1741T	p.R581C	CGCTGCGGGCCAG	.	17	14	19	2	.	0	0	0	0	0
CIITA	4261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	10992850	10992850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CIITA-226	NM_000246	exon5	c.C427A	p.Q143K	AAAAGTCAGAAAA	.	137	29	115	0	.	0	0	0	0	0
B3GNT9	84752	hgsc.bcm.edu	37	16	67184342	67184342	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_033309	exon2	c.T47C	p.L16P	CCAAGGAGCAGCG	.	9	2	5	0	.	0	0	0	0	0
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	89349917	89349917	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANKRD11-139	NM_001256183	exon9	c.G3033C	p.K1011N	ATCCTTCTTCTCC	.	122	69	187	0	.	12	2	10	0	0
TVP23C	201158	ucsc.edu	37	17	15457087	15457087	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_145301	exon3	c.G152A	p.C51Y	AGAAGACAGACGA	.	647	69	308	18	.	53	14	39	0	0
MYO15A	51168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	18082124	18082124	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYO15A-97	NM_016239	exon65	c.C10533A	p.N3511K	GGAGAACCTGCTC	.	100	55	80	1	.	0	0	0	0	0
ASIC2	40	hgsc.bcm.edu	37	17	31618997	31618997	+	Missense_Mutation	SNP	C	C	A	rs112647385		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_183377	exon1	c.G137T	p.R46L	AGCGCCCGCTCGC	.	5	5	0	0	C|0.740;A|0.260	0	0	0	0	0
KIAA1468	57614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59888685	59888685	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIAA1468-158	NM_020854	exon5	c.C813T	p.N271N	GAATAACTATAAG	.	98	28	68	0	.	1	0	1	0	0
RHPN2	85415	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	33503622	33503622	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	RHPN2-516	NM_033103	exon5	c.C399G	p.I133M	TTCCAGGATAAAA	.	54	24	50	0	.	0	0	0	0	0
KIAA0355	9710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	34832921	34832921	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIAA0355-91	NM_014686	exon10	c.G2082A	p.L694L	GTCACTGCCTGTG	.	111	35	133	0	.	9	9	0	0	0
IGFLR1	79713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36230750	36230750	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	IGFLR1-90	NM_024660	exon4	c.C582G	p.A194A	GGGGTCGGCTTTC	.	159	66	197	0	.	1	0	1	0	0
CNFN	84518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42893120	42893120	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CNFN-90	NM_032488	exon2	c.T70C	p.W24R	TGTGCCAGTCACT	.	37	22	50	0	.	1	1	0	0	0
ZNF285	26974	bcgsc.ca	37	19	44896602	44896602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZNF285-94	NM_152354	exon3	c.T44G	p.V15G	AAGACAACAGCCA	.	102	19	151	0	.	1	1	0	0	0
DMPK	1760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	46280763	46280763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DMPK-546	NM_001081563	exon7	c.C998T	p.T333I	AGCCGTGTCTCCG	.	76	31	82	0	.	67	27	40	0	0
VN1R2	317701	broad.mit.edu	37	19	53762720	53762720	+	Silent	SNP	T	T	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	VN1R2-90	NM_173856	exon1	c.T1092C	p.P364P	TAGCCCTTTTGTT	.	240	3	217	1	.	0	0	0	0	0
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	54385815	54385815	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PRKCG-1367	NM_002739	exon1	c.G67T	p.G23W	AGAAAGGGGGCCC	.	156	72	175	0	.	0	0	0	0	0
KIR3DL3	115653	hgsc.bcm.edu	37	19	55239373	55239373	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	KIR3DL3-46	NM_153443	exon4	c.G652A	p.V218I	GTGGTCGTAGGTG	.	146	65	181	0	.	0	0	0	0	0
CEP250	11190	bcgsc.ca	37	20	34092577	34092577	+	Missense_Mutation	SNP	A	A	C	rs200640167		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CEP250-27	NM_007186	exon30	c.A6380C	p.H2127P	TACCCCACAGCCA	.	117	22	149	0	.	11	11	0	0	0
SAMHD1	25939	hgsc.bcm.edu	37	20	35563508	35563508	+	Missense_Mutation	SNP	G	G	C	rs121434517	alternate_allele	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SAMHD1-90	NM_015474	exon4	c.C433G	p.R145G	TGTATCGAAGACG	.	73	4	114	0	.	34	34	0	0	0
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	bycluster	TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PIK3CA-27752	NM_006218	exon10	c.G1633A	p.E545K	ATCACTGAGCAGG	.	68	4	92	0	.	12	12	0	0	0
ANXA3	306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	79531260	79531260	+	Silent	SNP	A	A	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ANXA3-90	NM_005139	exon13	c.A963T	p.G321G	TGGTGGAGATGAC	.	78	39	94	1	.	111	71	40	0	0
GAB1	2549	hgsc.bcm.edu	37	4	144354854	144354854	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GAB1-1146	NM_207123	exon3	c.A578G	p.K193R	GCAAGAAGCCCGA	.	59	3	70	0	.	13	13	0	0	0
CCNB1	891	bcgsc.ca	37	5	68470159	68470159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CCNB1-650	NM_031966	exon5	c.G628A	p.V210I	TGGCTAGTACAGG	.	150	19	193	1	.	45	45	0	0	0
PCDHB2	56133	hgsc.bcm.edu	37	5	140476195	140476195	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PCDHB2-96	NM_018936	exon1	c.G1821T	p.Q607H	GTACCAGCTGCTC	.	181	23	232	0	.	14	14	0	0	0
PCDHB3	56132	bcgsc.ca	37	5	140481333	140481333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PCDHB3-92	NM_018937	exon1	c.T1100G	p.V367G	TGGCTGTTTTCAG	.	105	23	110	0	.	1	1	0	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517124	140517124	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PCDHB5-95	NM_015669	exon1	c.C2108G	p.S703W	TCTTTTCGGTGCT	.	211	6	311	0	.	8	8	0	0	0
LARS	51520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145533344	145533344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	LARS-90	NM_020117	exon12	c.G1183A	p.D395N	GGGAGTCGGAAGG	.	67	31	35	0	.	49	23	26	0	0
GRPEL2	134266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	148730749	148730749	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GRPEL2-91	NM_152407	exon4	c.C582T	p.T194T	TGGCACCGTGGCA	.	105	37	150	0	.	11	9	2	0	0
HLA-G	3135	ucsc.edu	37	6	29797247	29797247	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	HLA-G-517	NM_002127	exon5	c.C672T	p.T224T	GGCCACCCTGAGG	.	288	1	158	0	.	0	0	0	0	0
CCDC28A	25901	bcgsc.ca	37	6	139106480	139106480	+	Missense_Mutation	SNP	A	A	C	rs77141562		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CCDC28A-90	NM_015439	exon4	c.A709C	p.T237P	AGAAAAACAGCCA	.	150	31	177	0	.	95	94	0	1	0
HIVEP2	3097	broad.mit.edu	37	6	143090729	143090729	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	HIVEP2-95	NM_006734	exon5	c.G5147A	p.G1716D	AGCTTGCCGGTTC	.	129	4	91	0	.	8	8	0	0	0
SAMD5	389432	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	147830100	147830100	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SAMD5-68	NM_001030060	exon1	c.G36A	p.A12A	CAAAGCGCTGCAG	.	55	12	73	0	.	4	1	3	0	0
AP5Z1	9907	hgsc.bcm.edu	37	7	4820940	4820940	+	Missense_Mutation	SNP	G	G	A	rs200423282		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_014855	exon2	c.G176A	p.R59Q	ACAGCCGGAGGTG	.	40	2	76	0	.	0	0	0	0	0
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	47970797	47970797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PKD1L1-145	NM_138295	exon6	c.C641T	p.T214M	TCCATCGTGACAG	.	85	27	110	0	.	0	0	0	0	0
TPK1	27010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	144245631	144245631	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TPK1-188	NM_022445	exon8	c.G566T	p.G189V	GGCTGTCCAACAG	.	145	65	172	0	.	11	8	3	0	0
ZNF767	79970	broad.mit.edu;bcgsc.ca	37	7	149318520	149318520	+	RNA	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	ZNF767-90	.	.	.	.	ACGGCTGTCTTCT	.	125	57	194	0	.	11	8	3	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	151845739	151845739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MLL3-1398	NM_170606	exon52	c.G13273T	p.D4425Y	ACAGATCCAAGTC	.	102	45	128	0	.	27	20	7	0	0
MYOM2	9172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2044224	2044224	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYOM2-95	NM_003970	exon18	c.A2263G	p.K755E	CACCATAAAAACT	.	73	23	74	0	.	1	1	0	0	0
EBF2	64641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	25766022	25766022	+	Missense_Mutation	SNP	C	C	A	rs200594181		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	EBF2-26	NM_022659	exon7	c.G601T	p.A201S	TTCCTGCTGTTTT	.	53	25	45	0	C|0.999;A|0.000	0	0	0	0	0
FAM110B	90362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	59059734	59059734	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FAM110B-153	NM_147189	exon5	c.C945T	p.S315S	GATCAGCTCAGAC	.	45	19	60	0	.	48	16	31	0	1
MYBL1	4603	broad.mit.edu;bcgsc.ca	37	8	67477040	67477040	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MYBL1-395	NM_001080416	exon16	c.A2151T	p.T717T	AACCACTGTTTCC	.	11	4	18	0	.	5	3	2	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113249531	113249531	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSMD3-1132	NM_198123	exon67	c.C10515A	p.Y3505X	GAAATTGTAAGAG	.	104	38	99	0	.	0	0	0	0	0
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113249566	113249566	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	CSMD3-1132	NM_198123	exon67	c.G10480T	p.V3494L	CAAATACATCATC	.	80	25	82	0	.	0	0	0	0	0
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	142186773	142186773	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	DENND3-91	NM_014957	exon15	c.C2379T	p.F793F	AGTCTTCGAAGCC	.	91	40	121	0	.	8	7	1	0	0
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	144809117	144809117	+	Silent	SNP	G	G	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	FAM83H-92	NM_198488	exon5	c.C2514G	p.A838A	GCTCTGGGCAGAG	.	22	8	28	0	.	17	10	7	0	0
SMARCA2	6595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	2110312	2110312	+	Silent	SNP	C	C	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SMARCA2-653	NM_139045	exon24	c.C3351T	p.S1117S	TGGATCCCAGTAT	.	102	32	64	0	.	20	16	4	0	0
MELK	9833	bcgsc.ca	37	9	36651842	36651842	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	MELK-760	NM_014791	exon12	c.C1021A	p.Q341K	TGTGGACAAGCCA	.	312	43	293	5	.	6	6	0	0	0
SPATA31D1	389763	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	84607771	84607771	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	.	NM_001001670	exon4	c.G2386T	p.D796Y	GACAAGGATCTGA	.	102	37	157	0	.	0	0	0	0	0
PALM2-AKAP2	445815	ucsc.edu	37	9	112899612	112899612	+	Missense_Mutation	SNP	C	C	A	rs201181068		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	PALM2-AKAP2-475	NM_007203	exon8	c.C1788A	p.D596E	CTCAGACAAGCCA	.	98	10	124	5	.	31	22	9	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113141740	113141740	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	SVEP1-75	NM_153366	exon44	c.A10295G	p.Y3432C	TATTGATAATGTA	.	71	33	79	0	.	6	6	0	0	0
OR1B1	347169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	125391500	125391500	+	Silent	SNP	G	G	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	OR1B1-68	NM_001004450	exon1	c.C315T	p.F105F	ATAGAAGAAAAAG	.	55	21	60	0	.	0	0	0	0	0
EIF1AX	1964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	20152121	20152121	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	EIF1AX-131	NM_001412	exon4	c.G209T	p.W70L	TTTATCCAAACCT	.	33	20	37	0	.	0	0	0	0	0
GPR34	2857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41555435	41555435	+	Silent	SNP	T	T	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GPR34-131	NM_001097579	exon3	c.T549A	p.L183L	TGCTCTTGGTGGA	.	58	49	60	0	.	1	1	0	0	0
GPRASP1	9737	broad.mit.edu	37	X	101908967	101908967	+	Silent	SNP	C	C	A	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	GPRASP1-131	NM_001099411	exon3	c.C126A	p.T42T	TAGGACCCAGGCC	.	125	4	145	0	.	0	0	0	0	0
TXNRD1	7296	broad.mit.edu;bcgsc.ca	37	12	104721450	104721453	+	Splice_Site	DEL	GTGA	GTGA	-	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	GTGA	GTGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	TXNRD1-90	.	.	.	.	GTCAAGGTGAGTG	.	21	9	45	0	.	0	0	0	0	0
COL4A3BP	10087	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	74712823	74712828	+	In_Frame_Del	DEL	TACCAT	TACCAT	-	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	TACCAT	TACCAT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	COL4A3BP-226	NM_001130105	exon8	c.1094_1099del	p.365_367del	.	.	73	26	89	0	.	0	0	0	0	0
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	IL32-92	NM_001012632	exon7	c.515_516insG	p.D172fs	GGGGGGACAAGGA	.	447	21	227	0	.	0	0	0	0	0
BCORL1	63035	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	129173153	129173154	+	Frame_Shift_Ins	INS	-	-	CTGG	novel		TCGA-BQ-5893-01A-11D-1589-08	TCGA-BQ-5893-11A-01D-1589-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c3f8ab09-b776-4ca3-9b9d-f9848542f3dd	bbfe1ddb-1749-401c-b2f8-9b0854ae7d23	.	BCORL1-294	NM_021946	exon9	c.4514_4515insCTGG	p.I1505fs	.	.	38	22	74	0	.	0	0	0	0	0
