Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
EPHA8	2046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	22903099	22903099	+	Silent	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	EPHA8-1380	NM_020526	exon3	c.G549T	p.L183L	CTACCTGGCCTTC	.	69	25	74	0	.	0	0	0	0	0
RCC1	1104	broad.mit.edu	37	1	28862497	28862497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RCC1-228	NM_001048194	exon8	c.G869A	p.G290D	ATGAGGGCCACGT	.	69	5	95	0	.	24	21	3	0	0
RAB3B	5865	bcgsc.ca	37	1	52398990	52398990	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RAB3B-228	NM_002867	exon4	c.G472T	p.G158W	ACATACCAAGCTG	.	124	9	138	2	.	0	0	0	0	0
NOTCH2	4853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	120458888	120458888	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NOTCH2-1441	NM_024408	exon34	c.T6457A	p.S2153T	CTAGGGAATCAAC	.	111	36	123	1	.	124	61	63	0	0
NBPF9	400818	broad.mit.edu	37	1	144823878	144823878	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	.	.	.	.	.	GATGTTATTCAAC	.	117	4	128	0	.	8	8	0	0	0
TNKS1BP1	85456	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	57085299	57085299	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TNKS1BP1-91	NM_033396	exon4	c.C791T	p.P264L	TCAGCAGGTAGCT	.	49	8	49	0	.	0	0	0	0	0
NAA16	79612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	41905433	41905433	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NAA16-90	NM_001110798	exon8	c.A835T	p.I279F	CTTCAAATTTATG	.	148	47	187	0	.	10	6	4	0	0
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20841196	20841196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TEP1-95	NM_007110	exon48	c.G6925A	p.E2309K	TAGCTTCCTGCCA	.	103	41	115	0	.	8	4	4	0	0
AHNAK2	113146	ucsc.edu	37	14	105415291	105415291	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	AHNAK2-47	NM_138420	exon7	c.C6497T	p.S2166F	GGGGCAGACACCC	.	485	2	539	0	.	96	96	0	0	0
NDNL2	56160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	29561225	29561225	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NDNL2-90	NM_138704	exon1	c.C685G	p.R229G	GCTGTCGCACAAA	.	134	50	149	0	.	34	17	17	0	0
ARHGAP11A	9824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	32928906	32928906	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ARHGAP11A-292	NM_014783	exon12	c.T1932G	p.F644L	TCTATTTGAAACT	.	46	25	59	0	.	0	0	0	0	0
NR2F2	7026	broad.mit.edu	37	15	96877563	96877563	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NR2F2-228	NM_021005	exon2	c.C701G	p.P234R	TCTTCCCCGACCT	.	159	6	183	0	.	357	357	0	0	0
TMC5	79838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	19490814	19490814	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TMC5-91	NM_001105249	exon14	c.C2231G	p.S744C	TGTTCTCTTTAGT	.	389	116	344	1	.	0	0	0	0	0
EEF2K	29904	ucsc.edu	37	16	22274500	22274500	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	EEF2K-856	NM_013302	exon12	c.C1369T	p.R457X	GAGCCCCGAGAAC	.	28	4	26	0	.	0	0	0	0	0
ITGAX	3687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	31383749	31383749	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ITGAX-229	NM_000887	exon18	c.G2211A	p.T737T	CTTCACGCTGGTG	.	130	68	101	1	.	25	24	1	0	0
C16orf70	80262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67168085	67168085	+	Silent	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	C16orf70-70	NM_025187	exon7	c.T465C	p.H155H	TGCCCATGGCCTG	.	175	52	109	0	.	11	8	3	0	0
MYH13	8735	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10267725	10267725	+	Silent	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MYH13-6	NM_003802	exon3	c.G123A	p.A41A	ATTATCCGCTACA	.	64	13	53	0	.	0	0	0	0	0
ERAL1	26284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	27182278	27182278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ERAL1-91	NM_005702	exon1	c.T226C	p.F76L	CTCGGATTCTCTC	.	95	56	85	0	.	110	39	71	0	0
DLGAP1	9229	broad.mit.edu;bcgsc.ca	37	18	3499238	3499238	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	DLGAP1-229	NM_004746	exon13	c.C2879A	p.T960N	CTCTCGGTGGCCG	.	25	6	16	0	.	2	2	0	0	0
ZNF559	84527	hgsc.bcm.edu;bcgsc.ca	37	19	9453293	9453293	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559-91	NM_001202406	exon6	c.C1358G	p.A453G	GAAAAGCCTTTAT	.	74	26	71	0	.	6	6	0	0	0
HSPBP1	23640	ucsc.edu	37	19	55777303	55777303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	HSPBP1-90	NM_012267	exon6	c.C844T	p.R282W	CTGTCCGCACCAG	.	34	4	33	0	.	111	111	0	0	0
ZNRF3	84133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	29445350	29445350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNRF3-69	NM_001206998	exon8	c.T1181C	p.V394A	ACCCCGTCACCTT	.	55	15	69	0	.	23	12	11	0	0
ZNF619	285267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	40529349	40529349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF619-91	NM_001145082	exon6	c.C1468T	p.H490Y	CGAGTTCACACTG	.	115	64	84	0	.	6	4	2	0	0
RPL29	6159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52029445	52029445	+	Silent	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RPL29-90	NM_000992	exon2	c.C33T	p.N11N	ACACTGGTTGTGT	.	116	26	106	0	.	0	0	0	0	0
HGD	3081	broad.mit.edu	37	3	120366724	120366724	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	HGD-68	NM_000187	exon7	c.G469C	p.V157L	ACTCACCAATCAA	.	261	7	211	0	.	0	0	0	0	0
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	121168266	121168266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	POLQ-664	NM_199420	exon26	c.A7160G	p.Y2387C	ATCCCATAGCAAA	.	395	195	343	1	.	0	0	0	0	0
KPNA4	3840	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	160249255	160249255	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KPNA4-226	NM_002268	exon6	c.T378C	p.D126D	CTTGTCATCTCTT	.	235	128	182	0	.	0	0	0	0	0
DGKG	1608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	186006591	186006591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	DGKG-714	NM_001346	exon6	c.C452T	p.S151F	CTTGAAGACCGAG	.	420	97	346	0	.	0	0	0	0	0
MUC4	4585	broad.mit.edu	37	3	195516451	195516451	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MUC4-90	NM_018406	exon2	c.C2000G	p.P667R	GAACCTGGGGTGG	.	156	5	140	0	.	0	0	0	0	0
KLHL8	57563	broad.mit.edu;bcgsc.ca	37	4	88091355	88091355	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KLHL8-90	NM_020803	exon8	c.G1413A	p.M471I	AGAAGCCATTCCA	.	127	9	120	0	.	7	6	1	0	0
GRM4	2914	ucsc.edu	37	6	34100765	34100765	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	GRM4-525	NM_001256811	exon2	c.G509A	p.R170H	AAGAGGCGAAGGA	.	31	4	53	0	.	0	0	0	0	0
RUNX2	860	hgsc.bcm.edu;broad.mit.edu	37	6	45390466	45390466	+	Silent	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	RUNX2-417	NM_001024630	exon3	c.A195G	p.Q65Q	GCAGCAACAGCAG	.	48	4	46	0	.	7180	156	7016	2	6
C7orf57	136288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48081007	48081007	+	Silent	SNP	C	C	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	C7orf57-1	NM_001100159	exon3	c.C132A	p.L44L	AGGTCTCAGCAAT	.	100	46	88	0	.	0	0	0	0	0
ST7	7982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	116863027	116863027	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ST7-515	NM_021908	exon16	c.A1751G	p.Q584R	ATTTCCAAAACTG	.	84	42	66	0	.	67	17	50	0	0
POP1	10940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	99161148	99161148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	POP1-154	NM_001145860	exon13	c.G1816A	p.V606M	GGAAAAGTGACTG	.	47	16	52	0	.	6	4	2	0	0
ASPN	54829	hgsc.bcm.edu	37	9	95237030	95237030	+	Missense_Mutation	SNP	A	A	C	rs143279922		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ASPN-514	NM_001193335	exon2	c.T150G	p.D50E	CTCATCATCATCA	.	34	5	26	0	A|1.000;C|0.000	0	0	0	0	0
SVEP1	79987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	113163288	113163288	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	SVEP1-75	NM_153366	exon40	c.T9668G	p.L3223R	CCATCAAGCTAAG	.	102	33	110	1	.	0	0	0	0	0
BEND2	139105	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	18195783	18195783	+	Silent	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	BEND2-133	NM_153346	exon10	c.T1536A	p.I512I	GAACAAAATACGA	.	291	207	265	0	.	0	0	0	0	0
KDM6A	7403	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	44733231	44733231	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KDM6A-2748	NM_021140	exon2	c.A223T	p.K75X	CTGGGCAAGGTAA	.	12	8	25	0	.	0	0	0	0	0
MUL1	79594	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	20827614	20827614	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MUL1-90	NM_024544	exon4	c.628delC	p.L210fs	.	.	142	45	145	0	.	0	0	0	0	0
KBTBD4	55709	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	47597183	47597183	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	KBTBD4-91	NM_018095	exon3	c.706delA	p.R236fs	.	.	176	44	182	0	.	0	0	0	0	0
MAPK8IP3	23162	hgsc.bcm.edu	37	16	1817800	1817807	+	Frame_Shift_Del	DEL	CCACAGGC	CCACAGGC	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	CCACAGGC	CCACAGGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MAPK8IP3-1109	NM_015133	exon28	c.3407_3408del	p.1136_1136del	.	.	66	14	93	0	.	0	0	0	0	0
TNRC6A	27327	broad.mit.edu	37	16	24807240	24807240	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	TNRC6A-92	NM_014494	exon9	c.3541delA	p.K1181fs	AGTGGCAAAAAAA	.	312	7	260	0	.	0	0	0	0	0
ZNF559	84527	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	9453288	9453288	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559-91	NM_001202406	exon6	c.1353delA	p.G451fs	.	.	72	20	70	0	.	0	0	0	0	0
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	176637880	176637880	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	NSD1-188	NM_022455	exon5	c.2480delT	p.I827fs	.	.	49	13	61	0	.	0	0	0	0	0
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	76542650	76542650	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	MYO6-92	NM_004999	exon6	c.483delA	p.T161fs	.	.	140	43	107	0	.	0	0	0	0	0
LRBA	987	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	151271258	151271259	+	Frame_Shift_Ins	INS	-	-	AT	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	LRBA-157	NM_006726	exon49	c.7281_7282insAT	p.I2427fs	.	.	70	12	81	0	.	0	0	0	0	0
ZNF559	84527	bcgsc.ca	37	19	9453288	9453289	+	Missense_Mutation	DNP	AA	AA	GG	novel		TCGA-BQ-7060-01A-11D-1961-08	TCGA-BQ-7060-11A-01D-1961-08	AA	AA	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	3a023a28-7d8a-4390-995a-a2a91db99ceb	4a037b1b-bb44-4cec-83b6-2c926f8e4859	.	ZNF559-91	NM_001202406	exon6	c.A1354G	p.K388E	TGTGGAAAAGCCT	.	72	20	67	0	.	0	0	0	0	0
