Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
WASF2	10163	hgsc.bcm.edu	37	1	27736340	27736340	+	Silent	SNP	A	A	G	rs71584884	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	WASF2-228	NM_006990	exon8	c.T1185C	p.P395P	AGGAGGAGGGGGA	.	132	7	108	0	A|0.500;T|0.500	25	25	0	0	0
FOXJ3	22887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	42744042	42744042	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	FOXJ3-228	NM_001198852	exon3	c.A346T	p.R116X	CCTCTCTATAATA	.	88	34	111	0	.	4	4	0	0	0
RHOC	389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	113244309	113244309	+	Silent	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RHOC-848	NM_175744	exon6	c.G435C	p.R145R	CATGTCCCGGCCT	.	153	59	184	0	.	429	255	173	0	1
IVL	3713	broad.mit.edu	37	1	152882868	152882868	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	IVL-93	NM_005547	exon2	c.C595G	p.Q199E	GAGCAGCAGGAGG	.	100	8	121	2	.	0	0	0	0	0
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214815619	214815619	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CENPF-567	NM_016343	exon12	c.A3938T	p.E1313V	AGGCTGAAAAGTA	.	169	81	204	0	.	0	0	0	0	0
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88227091	88227091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	WAPAL-91	NM_015045	exon9	c.T2315C	p.I772T	CTTCGGATTTTTT	.	114	59	151	0	.	8	4	4	0	0
MUC6	4588	bcgsc.ca	37	11	1016801	1016801	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	MUC6-23	NM_005961	exon31	c.C6000G	p.H2000Q	CTGAGGGTGTGAT	.	754	20	837	15	.	0	0	0	0	0
LSP1	4046	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	1887915	1887915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	LSP1-90	NM_001242932	exon2	c.G211T	p.D71Y	CCAGGGGACGCTG	.	52	23	49	0	.	0	0	0	0	0
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62301415	62301415	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	AHNAK-109	NM_001620	exon5	c.G474A	p.T158T	GTAGGCCGTGACC	.	32	19	48	0	.	23	12	11	0	0
CAPN5	726	broad.mit.edu	37	11	76796027	76796027	+	Missense_Mutation	SNP	T	T	C	rs201256547		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CAPN5-90	NM_004055	exon2	c.T95C	p.F32S	CCCTCTTCCCCGC	.	62	22	63	17	.	4	4	0	0	0
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	94341805	94341805	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PIWIL4-91	NM_152431	exon15	c.C1896T	p.D632D	CAAGGACGTGATG	.	162	64	191	0	.	5	4	1	0	0
FAM60A	58516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	31448170	31448170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	FAM60A-90	NM_021238	exon4	c.C226T	p.H76Y	TAACATGATTCCA	.	439	248	440	0	.	0	0	0	0	0
FAM186A	121006	broad.mit.edu	37	12	50746116	50746116	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	FAM186A-68	NM_001145475	exon4	c.C4499T	p.A1500V	GCCTGGGCCTGCT	.	181	7	135	0	.	0	0	0	0	0
KRT8	3856	broad.mit.edu	37	12	53298675	53298675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KRT8-92	NM_001256282	exon2	c.T175G	p.S59A	TGCGGGAACCGGG	.	94	6	66	2	.	1882	1881	0	0	1
METAP2	10988	broad.mit.edu	37	12	95867964	95867964	+	Silent	SNP	T	T	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	METAP2-90	NM_006838	exon1	c.T9G	p.G3G	GGCGGGTGTGGAG	.	157	41	111	27	.	23	20	3	0	0
KCTD10	83892	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	109889450	109889450	+	Silent	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KCTD10-90	NM_031954	exon7	c.C892A	p.R298R	TCCTCCGCACGCG	.	55	4	41	0	.	28	28	0	0	0
ELL3	80237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	44067740	44067740	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ELL3-91	NM_025165	exon5	c.G552A	p.M184I	CTGTGCCATGTGC	.	60	8	91	0	.	9	9	0	0	0
PEAK1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	77450971	77450971	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	.	NM_024776	exon6	c.G3205T	p.D1069Y	TGCCATCTTGCTT	.	59	25	79	0	.	0	0	0	0	0
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3860637	3860637	+	Silent	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CREBBP-1807	NM_001079846	exon3	c.C942T	p.I314I	ATTCTTGATATCT	.	108	36	93	0	.	5	5	0	0	0
ABCC1	4363	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	16180696	16180696	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ABCC1-94	NM_004996	exon18	c.G2308A	p.G770R	CTGTCTGGGGGCC	.	35	5	47	0	.	8	5	3	0	0
TNRC6A	27327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	24788620	24788620	+	Missense_Mutation	SNP	C	C	G	rs201630200	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	TNRC6A-92	NM_014494	exon5	c.C530G	p.A177G	GCAGTGCTTTAAC	.	59	24	57	0	.	8	3	5	0	0
COG4	25839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	70548271	70548271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	COG4-90	NM_015386	exon4	c.T511A	p.S171T	TGACCGACTTGTC	.	44	14	94	0	.	24	12	12	0	0
KIAA0100	9703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	26943696	26943696	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KIAA0100-93	NM_014680	exon35	c.C6097G	p.R2033G	CACTTCGGCCAGG	.	140	85	117	0	.	69	29	40	0	0
HOXB4	3214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	46654346	46654346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	HOXB4-515	NM_024015	exon2	c.C494A	p.S165Y	GTCCGAGAGCGCT	.	101	57	44	0	.	16	5	11	0	0
NOG	9241	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	54672182	54672182	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	NOG-90	NM_005450	exon1	c.C598G	p.L200V	GTGCACCTCACGG	.	177	105	129	1	.	1	0	1	0	0
KIAA0195	9772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73487468	73487468	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	KIAA0195-91	NM_014738	exon13	c.G1318T	p.E440X	AAGGTGGAGCCCC	.	74	22	61	0	.	27	25	2	0	0
SS18	6760	ucsc.edu	37	18	23658090	23658090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	SS18-1968	NM_001007559	exon3	c.C181A	p.L61I	TAGCAAGGTATAC	.	42	4	65	0	.	15	15	0	0	0
ACER1	125981	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	6307219	6307219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ACER1-90	NM_133492	exon5	c.C571A	p.R191S	GCAGACGGTCACT	.	34	9	49	0	.	0	0	0	0	0
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	39226808	39226808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CAPN12-91	NM_144691	exon12	c.G1525A	p.A509T	CGCCGGCGTGGGC	.	17	8	20	0	.	7	5	2	0	0
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	42795850	42795850	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CIC-591	NM_015125	exon11	c.C2839T	p.P947S	GTGAGCCCGCCCT	.	88	32	69	0	.	39	21	18	0	0
TMEM145	284339	broad.mit.edu	37	19	42819592	42819592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	TMEM145-90	NM_173633	exon8	c.G646T	p.V216F	GTAGAGGGTGAGG	.	57	3	72	0	.	0	0	0	0	0
ZNF814	730051	bcgsc.ca	37	19	58385788	58385788	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	.	NM_001144989	exon3	c.T970C	p.Y324H	ATTCATAAGGTCT	.	78	6	103	0	.	1	1	0	0	0
SLC3A1	6519	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44539791	44539791	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	SLC3A1-90	NM_000341	exon8	c.A1399G	p.M467V	ATGAACATGCTTC	.	121	45	147	0	.	422	213	208	1	0
TM9SF4	9777	broad.mit.edu	37	20	30729306	30729306	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	TM9SF4-514	NM_014742	exon4	c.T236G	p.V79G	GAGAGGTGCTGAG	.	81	27	51	14	.	0	0	0	0	0
ARFGEF2	10564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	47587774	47587774	+	Silent	SNP	C	C	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ARFGEF2-358	NM_006420	exon10	c.C1308G	p.L436L	ATATCTCTGTGTG	.	115	47	98	0	.	3	2	1	0	0
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	22710734	22710734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	NCAM2-94	NM_004540	exon8	c.A924C	p.K308N	GCTTAAAAATGAA	.	148	61	188	0	.	0	0	0	0	0
DCBLD2	131566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	98600601	98600601	+	Silent	SNP	A	A	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	DCBLD2-92	NM_080927	exon2	c.T216C	p.C72C	GTGTCCACATCCA	.	144	51	186	0	.	0	0	0	0	0
EXOSC9	5393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	122722615	122722615	+	Silent	SNP	C	C	T	rs150604288	alternate_allele	TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	EXOSC9-90	NM_001034194	exon1	c.C36T	p.R12R	ACGCCGCTTCCTA	.	112	51	117	0	C|1.000;G|0.000	11	6	5	0	0
ARHGEF28	64283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	73207182	73207182	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	.	NM_001080479	exon35	c.A4730T	p.N1577I	CATTTAACACTTT	.	132	45	166	0	.	26	12	14	0	0
MAML1	9794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	179201053	179201053	+	Silent	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	MAML1-848	NM_014757	exon5	c.G2226A	p.V742V	GGGTGTGGCTCAG	.	43	17	50	0	.	5	1	4	0	0
DSP	1832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	7584156	7584156	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	DSP-518	NM_004415	exon24	c.G6661C	p.E2221Q	GTCACTGAGCTAG	.	54	19	69	0	.	46	20	26	0	0
ZP3	7784	ucsc.edu	37	7	76069823	76069823	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ZP3-90	NM_001110354	exon7	c.T955A	p.C319S	GACATCTGTCAAT	.	347	39	218	16	.	3	3	0	0	0
ZAN	7455	broad.mit.edu	37	7	100350474	100350474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ZAN-142	.	.	.	.	ACCATCTCCACGG	.	558	41	341	23	.	0	0	0	0	0
RBM33	155435	broad.mit.edu	37	7	155532557	155532557	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RBM33-23	NM_053043	exon12	c.A1886C	p.H629P	CACAGCACCCGCC	.	58	16	26	5	.	0	0	0	0	0
NAT1	9	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	18080420	18080420	+	Silent	SNP	T	T	C	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	NAT1-90	NM_001160176	exon4	c.T1050C	p.F350F	ATTTTTTACTATT	.	210	83	278	1	.	6	4	2	0	0
RNF139	11236	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	125487509	125487509	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RNF139-226	NM_007218	exon1	c.C159T	p.L53L	CGTGCTCCAGATC	.	56	23	75	1	.	19	13	6	0	0
ELAVL2	1993	broad.mit.edu	37	9	23762097	23762097	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ELAVL2-516	NM_001171195	exon2	c.C136A	p.L46I	GAGGAAGGTAGTT	.	134	4	166	0	.	0	0	0	0	0
CLTA	1211	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	36209297	36209297	+	Silent	SNP	C	C	T	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	CLTA-90	NM_001076677	exon5	c.C519T	p.F173F	ACCCTTCGCTGAC	.	89	38	128	0	.	0	0	0	0	0
PRUNE2	158471	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	79318374	79318374	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRUNE2-157	NM_015225	exon9	c.C8155T	p.H2719Y	TGTCATGGGTGAC	.	51	32	63	0	.	12	0	12	0	0
RBM3	5935	broad.mit.edu	37	X	48434952	48434952	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	RBM3-131	NM_006743	exon5	c.T373G	p.Y125D	GGAGGGTATGGAT	.	46	15	64	12	.	310	306	1	3	0
PAQR7	164091	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	26189753	26189755	+	In_Frame_Del	DEL	TTG	TTG	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	TTG	TTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PAQR7-71	NM_178422	exon2	c.576_578del	p.192_193del	.	.	105	44	105	0	.	0	0	0	0	0
AHDC1	27245	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27876672	27876673	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	AHDC1-90	NM_001029882	exon6	c.1954_1955del	p.652_652del	.	.	41	16	53	0	.	0	0	0	0	0
PRB1	5542	broad.mit.edu	37	12	11506653	11506653	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRB1-90	.	.	.	.	TTGAGGTCTGTTG	.	94	7	63	0	.	0	0	0	0	0
ZNF529	57711	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	37038841	37038841	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	ZNF529-67	NM_001145649	exon6	c.619delA	p.T207fs	.	.	47	15	123	0	.	0	0	0	0	0
MLL3	58508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	151874152	151874158	+	Frame_Shift_Del	DEL	TTTTTGG	TTTTTGG	-	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	TTTTTGG	TTTTTGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	MLL3-1398	NM_170606	exon38	c.8380_8386del	p.2794_2796del	.	.	95	30	69	0	.	0	0	0	0	0
PRB1	5542	broad.mit.edu	37	12	11506632	11506633	+	In_Frame_Ins	INS	-	-	GGA	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRB1-90	.	.	.	.	CTTTCCTGGAGGT	.	79	8	46	0	.	0	0	0	0	0
PRB1	5542	broad.mit.edu	37	12	11506655	11506656	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	PRB1-90	.	.	.	.	GAGGTCTGTTGCC	.	94	7	63	0	.	0	0	0	0	0
AP1S1	1174	broad.mit.edu	37	7	100802404	100802405	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-G7-A4TM-01A-11D-A31X-10	TCGA-G7-A4TM-10B-01D-A31X-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	d7e8ac41-c79b-4372-92d4-4df7a9fdcdb7	e79e18b2-3037-4c27-bbeb-21d6df3720fb	.	AP1S1-226	NM_001283	exon4	c.356_357insG	p.M119fs	TTTTGATGGGGGG	.	110	7	48	0	.	0	0	0	0	0
