Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	Trna_tot	Trna_ref	Trna_var	Trna_alt1	Trna_alt2
MAP3K6	9064	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	27687435	27687435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAP3K6-1523	NM_004672	exon14	c.G1897A	p.E633K	CGCCCTCCGCCTC	.	102	35	71	0	.	0	0	0	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45671664	45671664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZSWIM5-22	NM_020883	exon1	c.G359T	p.G120V	CCGGGGCCGCCCC	.	25	4	18	0	.	0	0	0	0	0
PRKACB	5567	ucsc.edu	37	1	84663465	84663465	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PRKACB-1083	NM_182948	exon7	c.T741C	p.C247C	ATTATGTGGAACT	.	37	1	44	0	.	7	7	0	0	0
TUFT1	7286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	151552139	151552139	+	Silent	SNP	A	A	G	rs201062061	alternate_allele	TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TUFT1-90	NM_020127	exon11	c.A939G	p.K313K	TTCAAAAGCTGTG	.	138	17	170	0	.	0	0	0	0	0
GATAD2B	57459	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153792180	153792180	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GATAD2B-90	NM_020699	exon3	c.C367G	p.P123A	TGTCTGGTGAGGG	.	193	17	241	0	.	0	0	0	0	0
EFNA1	1942	ucsc.edu	37	1	155104060	155104060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	EFNA1-90	NM_182685	exon2	c.C338T	p.P113L	TCACACCTTTCAC	.	249	1	338	0	.	4	4	0	0	0
CAMK1D	57118	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	12856228	12856228	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CAMK1D-334	NM_153498	exon7	c.G676A	p.D226N	GAAAATGACTCCA	.	99	10	73	0	.	0	0	0	0	0
ZNF33B	7582	ucsc.edu	37	10	43088083	43088083	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNF33B-90	NM_006955	exon5	c.T2315C	p.I772T	TCTCCTATGTGTG	.	120	1	149	0	.	4	4	0	0	0
IKZF5	64376	broad.mit.edu;bcgsc.ca	37	10	124754057	124754057	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IKZF5-90	NM_001271840	exon5	c.A499G	p.K167E	TACCTTTAATTGG	.	122	7	163	1	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1092926	1092926	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MUC2-90	NM_002457	exon30	c.C4745G	p.T1582R	CCCCAACATCGAC	.	144	6	180	0	.	0	0	0	0	0
MUC2	4583	bcgsc.ca	37	11	1093312	1093312	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MUC2-90	NM_002457	exon30	c.C5131G	p.P1711A	CCAACCCCAACAC	.	97	8	124	4	.	0	0	0	0	0
KCNQ1	3784	hgsc.bcm.edu	37	11	2466535	2466535	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	KCNQ1-515	NM_000218	exon1	c.G207T	p.A69A	GGCCGCGCCCGCC	.	4	4	0	0	.	0	0	0	0	0
TRIM68	55128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	4621750	4621750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TRIM68-91	NM_018073	exon7	c.G1214A	p.R405Q	CCTGCTCGGTACT	.	164	35	196	0	.	0	0	0	0	0
CD59	966	broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	33731752	33731752	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CD59-90	NM_203331	exon5	c.G307A	p.G103S	TCCCACCATTTTC	.	215	25	215	2	.	195	144	51	0	0
ZNHIT2	741	hgsc.bcm.edu	37	11	64884755	64884755	+	Missense_Mutation	SNP	G	G	A	rs200126440		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNHIT2-153	NM_014205	exon1	c.C371T	p.P124L	CATGGAGGCAGCA	.	13	8	1	0	.	3	1	2	0	0
DSCAML1	57453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117352683	117352683	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	DSCAML1-159	NM_020693	exon12	c.C2734G	p.L912V	CCTTCAGTGTGGA	.	97	33	110	0	.	0	0	0	0	0
IL10RA	3587	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	117869470	117869470	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IL10RA-91	NM_001558	exon7	c.G851T	p.R284L	GCCAGCGTCCCTC	.	115	18	122	0	.	16	16	0	0	0
UTP20	27340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101720912	101720912	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	UTP20-155	NM_014503	exon26	c.C3095A	p.S1032Y	GGAAATCTGCTTC	.	82	13	90	0	.	0	0	0	0	0
PAH	5053	broad.mit.edu	37	12	103271308	103271308	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PAH-72	NM_000277	exon4	c.A373T	p.I125F	CTTGAATGGTTCT	.	81	4	74	1	.	0	0	0	0	0
GCN1L1	10985	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	120572149	120572149	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GCN1L1-94	NM_006836	exon53	c.C7263G	p.A2421A	GATGACGGCATCC	.	76	9	69	1	.	8	1	7	0	0
FBRSL1	57666	hgsc.bcm.edu	37	12	133159733	133159733	+	Missense_Mutation	SNP	C	C	T	rs11550079		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FBRSL1-70	NM_001142641	exon17	c.C2507T	p.A836V	AGGAGGCCGCCAA	.	14	11	0	0	C|0.470;T|0.530	0	0	0	0	0
TNFRSF19	55504	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	24167593	24167593	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TNFRSF19-228	NM_018647	exon3	c.A179C	p.K60T	TGTCTAAGGTATA	.	122	17	147	1	.	0	0	0	0	0
HMGB1	3146	broad.mit.edu	37	13	31036768	31036768	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	HMGB1-227	NM_002128	exon4	c.G378A	p.A126A	TTTCTTCGCAACA	.	89	4	110	0	.	418	406	12	0	0
KIAA0226L	80183	broad.mit.edu;bcgsc.ca	37	13	46946278	46946278	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_025113	exon3	c.C333T	p.S111S	GCCAACGGAGTCT	.	122	6	123	0	.	0	0	0	0	0
TPP2	7174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	103328750	103328750	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TPP2-92	NM_003291	exon28	c.G3645T	p.W1215C	AAACTGGAAAAAT	.	117	11	137	0	.	40	40	0	0	0
IRS2	8660	hgsc.bcm.edu	37	13	110435073	110435073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IRS2-1334	NM_003749	exon1	c.C3328T	p.L1110F	CCATGAGGCTCAG	.	54	21	8	0	.	0	0	0	0	0
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	94052953	94052953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_020818	exon21	c.G2284C	p.D762H	AAGAATGATACCG	.	30	7	24	0	.	0	0	0	0	0
ASB2	51676	broad.mit.edu	37	14	94405527	94405527	+	Missense_Mutation	SNP	T	T	G	rs199833352		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ASB2-228	NM_001202429	exon8	c.A1544C	p.H515P	GGCGGGTGCGGGC	.	94	28	41	9	.	0	0	0	0	0
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	75500838	75500838	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	C15orf39-90	NM_015492	exon2	c.A2449G	p.K817E	CTGGCCAAGCTGC	.	42	7	22	0	.	3	3	0	0	0
UBE2I	7329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	1370453	1370453	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	UBE2I-290	NM_003345	exon6	c.A348G	p.I116M	AGGAATACAGGAA	.	36	5	25	0	.	111	92	19	0	0
CREBBP	1387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	3817823	3817823	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CREBBP-1807	NM_004380	exon16	c.G3148T	p.E1050X	TCTTTTCATCCAC	.	110	30	102	0	.	2	1	1	0	0
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30744761	30744761	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SRCAP-94	NM_006662	exon28	c.A6288G	p.E2096E	AGTTGAACAGAGA	.	100	25	105	0	.	0	0	0	0	0
CDH8	1006	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	61823266	61823266	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CDH8-161	NM_001796	exon8	c.C1398G	p.I466M	AGCAATGATTGTT	.	157	11	154	0	.	0	0	0	0	0
PKD1L2	114780	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	81197248	81197248	+	Missense_Mutation	SNP	C	C	T	rs200120814		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PKD1L2-92	.	.	.	.	TGACCACTAGGGC	.	105	26	98	0	.	0	0	0	0	0
RPH3AL	9501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	131631	131631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RPH3AL-91	NM_006987	exon6	c.A366T	p.K122N	CCCACATTTGGTG	.	231	46	211	0	.	0	0	0	0	0
TRPV3	162514	broad.mit.edu	37	17	3438998	3438998	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TRPV3-94	NM_001258205	exon7	c.C653A	p.A218E	TTCAGCGCCGTCT	.	80	7	16	0	.	0	0	0	0	0
RPL26	6154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	8283223	8283223	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RPL26-227	NM_000987	exon3	c.T200G	p.I67S	TTGCCAATTTGCT	.	117	14	101	0	.	3788	3518	269	1	0
CEP95	90799	bcgsc.ca	37	17	62528114	62528114	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CEP95-23	NM_138363	exon14	c.T1646C	p.L549P	GTGGCCTCCCAAA	.	63	4	77	0	.	16	16	0	0	0
GGA3	23163	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	73239164	73239164	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GGA3-154	NM_138619	exon6	c.G508C	p.D170H	CATCATCAAAAAC	.	284	77	240	0	.	0	0	0	0	0
UTS2R	2837	broad.mit.edu	37	17	80333066	80333066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	UTS2R-153	NM_018949	exon1	c.C866A	p.A289E	CGCTGGCGCCGCG	.	102	13	50	2	.	0	0	0	0	0
RNMT	8731	ucsc.edu	37	18	13746266	13746266	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RNMT-90	NM_003799	exon9	c.T1187C	p.L396P	CATTTCTGGAATT	.	274	1	321	0	.	0	0	0	0	0
CTAGE1	64693	broad.mit.edu	37	18	19995948	19995948	+	Silent	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CTAGE1-1	NM_172241	exon1	c.C1827G	p.L609L	ACTTCTGAGTTCT	.	120	11	156	1	.	13	13	0	0	0
GRIN3B	116444	hgsc.bcm.edu	37	19	1003374	1003374	+	Silent	SNP	G	G	A	rs34585248		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GRIN3B-90	NM_138690	exon2	c.G672A	p.A224A	GGCGGCGCCAGTG	.	60	36	5	0	G|0.966;A|0.034	0	0	0	0	0
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9058716	9058716	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MUC16-566	NM_024690	exon3	c.C28730G	p.S9577X	GACATTGACTCTA	.	155	31	154	0	.	0	0	0	0	0
ZNF257	113835	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	22271296	22271296	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNF257-90	NM_033468	exon4	c.G744A	p.K248K	ACATAAGGTAATT	.	71	7	81	1	.	0	0	0	0	0
PRKCG	5582	broad.mit.edu	37	19	54401866	54401866	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PRKCG-1367	NM_002739	exon11	c.C1265G	p.S422C	TCCACTCCACCTT	.	89	9	89	0	.	4	4	0	0	0
MBOAT7	79143	broad.mit.edu	37	19	54684811	54684811	+	Missense_Mutation	SNP	T	T	C	rs200188828		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MBOAT7-68	NM_001146082	exon6	c.A533G	p.E178G	GGCTGCTCCAGCC	.	38	9	12	0	.	5	5	0	0	0
PPP6R1	22870	broad.mit.edu	37	19	55743012	55743012	+	Silent	SNP	T	T	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PPP6R1-67	NM_014931	exon20	c.A2331C	p.S777S	AGGTGCTGAGGGG	.	68	5	60	0	.	59	51	8	0	0
ZNF814	730051	ucsc.edu	37	19	58384712	58384712	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_001144989	exon3	c.T2046C	p.H682H	TCCAGTATGGCCA	.	142	1	160	0	.	2	2	0	0	0
RMDN2	151393	bcgsc.ca	37	2	38156861	38156861	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_001170792	exon2	c.A441G	p.E147E	AGCAGAAAGTGAA	.	65	4	80	1	.	0	0	0	0	0
ALMS1	7840	broad.mit.edu	37	2	73675809	73675809	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ALMS1-142	NM_015120	exon8	c.A2152T	p.R718X	TCACATAGAGAGA	.	91	3	71	0	.	0	0	0	0	0
PHOSPHO2	493911	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	170557975	170557975	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PHOSPHO2-91	NM_001199286	exon4	c.T494A	p.L165X	AACAGTTACAACA	.	53	6	87	0	.	2	2	0	0	0
TASP1	55617	broad.mit.edu	37	20	13561621	13561621	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TASP1-90	NM_017714	exon6	c.G411A	p.K137K	TGGGTTCTTGATT	.	26	6	41	2	.	0	0	0	0	0
LAMA5	3911	broad.mit.edu	37	20	60895706	60895706	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LAMA5-93	NM_005560	exon50	c.T6668G	p.L2223R	GGGCCCAGGGGGC	.	90	25	55	5	.	3	3	0	0	0
NF2	4771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	30057329	30057329	+	Splice_Site	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NF2-4696	NM_016418	exon8	c.810+1G>A	.	AAGGAGGTAGGAC	.	42	14	68	0	.	0	0	0	0	0
MIRLET7BHG	400931	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	46501510	46501510	+	RNA	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	.	.	.	.	ACATTCCGTCACC	.	101	32	124	1	.	0	0	0	0	0
IL17RC	84818	broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	9959173	9959173	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IL17RC-92	NM_153461	exon1	c.C174T	p.S58S	CCTTAGCCTGGCT	.	193	20	160	1	.	3	0	3	0	0
ROBO1	6091	ucsc.edu	37	3	78685208	78685208	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ROBO1-67	NM_002941	exon23	c.C3088T	p.L1030L	GCATCAGATTTGT	.	199	1	163	0	.	0	0	0	0	0
CD96	10225	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	111297955	111297955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CD96-93	NM_198196	exon5	c.C673T	p.L225F	GTCAAGCTTGGTA	.	178	14	178	0	.	12	12	0	0	0
GSK3B	2932	bcgsc.ca	37	3	119642255	119642255	+	Silent	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GSK3B-978	NM_002093	exon4	c.C442A	p.R148R	TGGCTCGACTATA	.	51	4	53	0	.	3	3	0	0	0
ZIC1	7545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	147128794	147128794	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZIC1-91	NM_003412	exon1	c.G895T	p.E299X	ACGGGCGAGAAGC	.	160	36	169	0	.	0	0	0	0	0
MAEA	10296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	1332242	1332242	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAEA-91	NM_001017405	exon8	c.G932A	p.S311N	CCAAGAGCCCTGA	.	68	18	76	0	.	11	6	5	0	0
SLC30A9	10463	ucsc.edu	37	4	42077746	42077746	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SLC30A9-91	NM_006345	exon16	c.T1491C	p.D497D	TTTTGATGGGCGA	.	236	1	280	0	.	7	7	0	0	0
TLL1	7092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	166996130	166996130	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TLL1-158	NM_012464	exon17	c.T2289C	p.H763H	GCTACATGACAAT	.	161	18	223	0	.	0	0	0	0	0
FCHO2	115548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	72359736	72359736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FCHO2-23	NM_138782	exon18	c.C1414A	p.L472I	CCAAAGCTTACTT	.	139	43	193	0	.	0	0	0	0	0
IQGAP2	10788	broad.mit.edu	37	5	75960882	75960882	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	IQGAP2-96	NM_006633	exon22	c.A2561T	p.K854M	TGAACAAGAAAAA	.	134	4	143	0	.	0	0	0	0	0
NR3C1	2908	ucsc.edu	37	5	142680190	142680190	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NR3C1-92	NM_001024094	exon5	c.T1610C	p.L537S	ACCTCCAACAGTG	.	183	2	217	0	.	7	7	0	0	0
PXDC1	221749	broad.mit.edu	37	6	3751742	3751742	+	Silent	SNP	G	G	T	rs199672547	alternate_allele	TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_183373	exon1	c.C24A	p.G8G	CGACGTGCCCTCA	.	69	5	53	1	G|0.996;A|0.004	5	5	0	0	0
APOM	55937	broad.mit.edu	37	6	31625014	31625014	+	Silent	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	APOM-90	NM_019101	exon3	c.C282G	p.L94L	TGGGCTCTGTGTG	.	102	4	111	0	.	0	0	0	0	0
RARS2	57038	ucsc.edu;bcgsc.ca	37	6	88299660	88299660	+	Missense_Mutation	SNP	G	G	A	rs201899366		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RARS2-92	NM_020320	exon1	c.C16T	p.R6C	CGCGGCGAAAGCC	.	81	34	83	11	G|0.999;A|0.000	3	3	0	0	0
MTRF1L	54516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	153315714	153315714	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MTRF1L-90	NM_019041	exon4	c.G621C	p.K207N	TTCTGTCTTTGGC	.	112	14	113	0	.	1	1	0	0	0
CARD11	84433	broad.mit.edu	37	7	2956956	2956956	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CARD11-870	NM_032415	exon20	c.C2671T	p.R891X	TTGCTCGCGAGAG	.	35	5	30	1	.	8	8	0	0	0
BZW2	28969	broad.mit.edu	37	7	16721024	16721024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	BZW2-92	NM_014038	exon4	c.G334T	p.A112S	AACTATGCTCAGG	.	54	5	59	0	.	0	0	0	0	0
AUTS2	26053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	70231266	70231266	+	Silent	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	AUTS2-92	NM_001127231	exon9	c.G1635A	p.P545P	CACGCCGTTCCCC	.	90	31	63	0	.	0	0	0	0	0
MLL3	58508	broad.mit.edu	37	7	151945198	151945198	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MLL3-1398	NM_170606	exon14	c.C2321G	p.A774G	ATGTCTGCTGATG	.	627	13	771	0	.	0	0	0	0	0
WDR67	93594	broad.mit.edu;ucsc.edu	37	8	124094982	124094982	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	WDR67-226	NM_001145088	exon3	c.C265A	p.L89M	ACAGCTCTGGCCT	.	32	4	28	0	.	0	0	0	0	0
OPLAH	26873	broad.mit.edu	37	8	145111554	145111554	+	Missense_Mutation	SNP	C	C	T	rs200399200		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	OPLAH-68	NM_017570	exon13	c.G1811A	p.R604H	CCCGCACGGGGCG	.	108	3	85	0	.	0	0	0	0	0
COL27A1	85301	broad.mit.edu	37	9	117052570	117052570	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	COL27A1-94	NM_032888	exon47	c.C4327A	p.P1443T	GCTGGACCAGATG	.	155	5	138	0	.	10	10	0	0	0
TRIM32	22954	broad.mit.edu;bcgsc.ca	37	9	119461631	119461631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TRIM32-650	NM_012210	exon2	c.T1610A	p.L537Q	TCAATCTGGAGAA	.	150	12	168	1	.	1	0	1	0	0
LMX1B	4010	broad.mit.edu	37	9	129376780	129376780	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LMX1B-90	NM_001174146	exon1	c.C52A	p.Q18K	CGCGGGCAGACGG	.	125	6	62	1	.	0	0	0	0	0
LAMC3	10319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	133914285	133914285	+	Silent	SNP	G	G	A	rs201170354		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LAMC3-93	NM_006059	exon5	c.G1011A	p.T337T	ATGCACGTTTGAT	.	58	8	46	0	G|0.999;A|0.000	0	0	0	0	0
USP9X	8239	broad.mit.edu	37	X	41022128	41022128	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	USP9X-563	NM_001039591	exon15	c.T1983C	p.L661L	CTTCCTTAGGTTT	.	217	6	250	0	.	0	0	0	0	0
TFE3	7030	broad.mit.edu	37	X	48888986	48888986	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TFE3-658	NM_006521	exon9	c.C1210T	p.Q404X	AGCGCTGCTGCTC	.	76	4	104	0	.	26	26	0	0	0
DGKK	139189	broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	50144042	50144042	+	Silent	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	DGKK-227	.	.	.	.	ATCGCCTTTGGGG	.	363	93	363	0	.	0	0	0	0	0
ZXDB	158586	hgsc.bcm.edu	37	X	57618715	57618715	+	Silent	SNP	C	C	T	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZXDB-130	NM_007157	exon1	c.C234T	p.T78T	GAGGACCGATCAA	.	12	8	4	0	.	0	0	0	0	0
GLUD2	2747	ucsc.edu	37	X	120182480	120182480	+	Silent	SNP	A	A	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GLUD2-131	NM_012084	exon1	c.A942G	p.L314L	GGGCCTACACTCT	.	317	4	461	4	.	6	0	6	0	0
THOC2	57187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	122757675	122757675	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	THOC2-133	NM_001081550	exon28	c.A3466G	p.K1156E	TCTCTTTTTCTTC	.	42	7	67	0	.	10	10	0	0	0
NASP	4678	broad.mit.edu;bcgsc.ca	37	1	46073053	46073073	+	In_Frame_Del	DEL	CCAAAAAAACAGAAGACAAGT	CCAAAAAAACAGAAGACAAGT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CCAAAAAAACAGAAGACAAGT	CCAAAAAAACAGAAGACAAGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NASP-91	NM_002482	exon6	c.470_490del	p.157_164del	AAGAAGCCAAAAA	.	178	13	229	0	.	0	0	0	0	0
PHTF1	10745	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	114255942	114255943	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TT	TT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PHTF1-91	NM_006608	exon7	c.741_742del	p.247_248del	.	.	81	20	93	0	.	0	0	0	0	0
PFKP	5214	hgsc.bcm.edu	37	10	3150955	3150955	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PFKP-253	NM_002627	exon9	c.933delA	p.G311fs	.	.	156	35	168	0	.	0	0	0	0	0
PITRM1	10531	broad.mit.edu;bcgsc.ca	37	10	3207428	3207429	+	Splice_Site	DEL	AC	AC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PITRM1-91	.	.	.	.	AAACTTACAAACG	.	94	9	92	0	.	0	0	0	0	0
AHNAK	79026	broad.mit.edu;bcgsc.ca	37	11	62285795	62285796	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	AHNAK-109	NM_001620	exon5	c.16093_16094del	p.5365_5365del	CCCCTCAGTGTCA	.	153	16	180	0	.	0	0	0	0	0
MTA2	9219	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	62364175	62364176	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MTA2-92	NM_004739	exon9	c.815_816del	p.272_272del	.	.	134	24	128	0	.	0	0	0	0	0
OR8D1	283159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	124180084	124180085	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GT	GT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	OR8D1-71	NM_001002917	exon1	c.578_579del	p.193_193del	.	.	214	45	198	0	.	0	0	0	0	0
LRRK2	120892	broad.mit.edu	37	12	40742254	40742254	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LRRK2-533	NM_198578	exon43	c.6324delG	p.E2108fs	GGTTGAGAAATTA	.	148	9	211	0	.	0	0	0	0	0
LRRK2	120892	broad.mit.edu	37	12	40742257	40742259	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	LRRK2-533	NM_198578	exon43	c.6327_6329del	p.2109_2110del	TGAGAAATTAATT	.	146	9	207	0	.	0	0	0	0	0
SOAT2	8435	broad.mit.edu;bcgsc.ca	37	12	53499371	53499372	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SOAT2-91	NM_003578	exon4	c.302_303del	p.101_101del	GGAAACAGAAAGT	.	88	9	84	0	.	0	0	0	0	0
CEP128	145508	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	81251281	81251284	+	Frame_Shift_Del	DEL	CTTA	CTTA	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CTTA	CTTA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	CEP128-91	NM_152446	exon14	c.2166_2169del	p.722_723del	.	.	75	25	92	0	.	0	0	0	0	0
GLCE	26035	hgsc.bcm.edu;bcgsc.ca	37	15	69553563	69553564	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GLCE-92	NM_015554	exon4	c.724_725del	p.242_242del	.	.	105	22	157	0	.	0	0	0	0	0
SPIRE2	84501	broad.mit.edu;bcgsc.ca	37	16	89924825	89924826	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SPIRE2-90	NM_032451	exon8	c.1182_1183del	p.394_395del	AGTCACAGATGCT	.	102	12	89	0	.	0	0	0	0	0
C17orf80	55028	broad.mit.edu	37	17	71232036	71232037	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	C17orf80-91	NM_001100621	exon3	c.415_416del	p.139_139del	AAGGCTCAGTTTT	.	197	12	142	0	.	0	0	0	0	0
MAU2	23383	hgsc.bcm.edu	37	19	19431690	19431704	+	In_Frame_Del	DEL	GCGGCCCAGGCGGCG	GCGGCCCAGGCGGCG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GCGGCCCAGGCGGCG	GCGGCCCAGGCGGCG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAU2-91	NM_015329	exon1	c.22_36del	p.8_12del	.	.	40	28	2	0	.	0	0	0	0	0
SOCS5	9655	broad.mit.edu	37	2	46987222	46987224	+	In_Frame_Del	DEL	ATT	ATT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	ATT	ATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SOCS5-659	NM_144949	exon2	c.1553_1555del	p.518_519del	AGTATCATTATAA	.	212	10	233	0	.	0	0	0	0	0
ASPRV1	151516	broad.mit.edu	37	2	70188625	70188626	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ASPRV1-69	NM_152792	exon1	c.195_196del	p.65_66del	ACCCACAGAGCAG	.	163	14	173	0	.	0	0	0	0	0
TTL	150465	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113260608	113260609	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AT	AT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TTL-658	NM_153712	exon5	c.725_726del	p.242_242del	.	.	123	33	130	0	.	0	0	0	0	0
C22orf39	128977	broad.mit.edu	37	22	19435297	19435299	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	C22orf39-22	NM_173793	exon1	c.24_26del	p.8_9del	ACTGACAGAAGAA	.	305	14	259	0	.	0	0	0	0	0
NEFH	4744	hgsc.bcm.edu	37	22	29885581	29885604	+	In_Frame_Del	DEL	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGGCCAAGTCCCCAGAGAAGGAAG	AGGCCAAGTCCCCAGAGAAGGAAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NEFH-90	NM_021076	exon4	c.1952_1975del	p.651_659del	.	.	189	96	226	0	.	0	0	0	0	0
TEX33	339669	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	37396006	37396008	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TCA	TCA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	.	NM_001163857	exon4	c.507_509del	p.169_170del	.	.	88	25	92	0	.	0	0	0	0	0
SYN2	6854	broad.mit.edu	37	3	12046124	12046126	+	In_Frame_Del	DEL	AGC	AGC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGC	AGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	SYN2-24	.	.	.	.	CCAGCAAGCGCCG	.	10	3	5	0	.	0	0	0	0	0
GOLGA4	2803	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	37365077	37365078	+	Splice_Site	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	GOLGA4-93	.	.	.	.	.	.	128	33	141	0	.	0	0	0	0	0
NFKBIZ	64332	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	101572345	101572345	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	NFKBIZ-92	NM_031419	exon5	c.975delC	p.N325fs	.	.	91	17	93	0	.	0	0	0	0	0
HTT	3064	broad.mit.edu	37	4	3076604	3076606	+	In_Frame_Del	DEL	CAG	CAG	-	rs10618869		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CAG	CAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	HTT-281	NM_002111	exon1	c.52_54del	p.18_18del	TCCTTCCAGCAGC	.	9	3	4	0	.	0	0	0	0	0
RASA1	5921	hgsc.bcm.edu;bcgsc.ca	37	5	86564698	86564699	+	Frame_Shift_Del	DEL	CC	CC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	RASA1-661	NM_002890	exon1	c.430_431del	p.144_144del	.	.	35	12	38	0	.	0	0	0	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu;bcgsc.ca	37	5	139928645	139928646	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ANKHD1-EIF4EBP3-28	NM_020690	exon35	c.7834_7835del	p.2612_2612del	GGAGACAGAGGAA	.	89	12	125	0	.	0	0	0	0	0
PCDHB5	26167	broad.mit.edu;bcgsc.ca	37	5	140515133	140515134	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	PCDHB5-95	NM_015669	exon1	c.117_118del	p.39_40del	AGAAACAGAAAGT	.	102	11	141	0	.	0	0	0	0	0
FASTK	10922	bcgsc.ca	37	7	150775936	150775938	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GCT	GCT	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FASTK-359	NM_006712	exon3	c.676_678del	p.226_226del	TGCCAGGCTGCTG	.	59	6	70	0	.	0	0	0	0	0
ZNF7	7553	broad.mit.edu	37	8	146066868	146066869	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	TC	TC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZNF7-94	NM_003416	exon5	c.376_377del	p.126_126del	GACGTTTCTGATT	.	87	10	90	0	.	0	0	0	0	0
ZRSR2	8233	hgsc.bcm.edu	37	X	15841231	15841236	+	In_Frame_Del	DEL	AGCCGG	AGCCGG	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AGCCGG	AGCCGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	ZRSR2-133	NM_005089	exon11	c.1315_1320del	p.439_440del	.	.	62	19	23	0	.	0	0	0	0	0
BCOR	54880	broad.mit.edu	37	X	39913206	39913207	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	AC	AC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	BCOR-229	NM_001123385	exon14	c.4908_4909del	p.1636_1637del	ATTCAAACACATC	.	235	19	261	0	.	0	0	0	0	0
EPHA2	1969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	16459720	16459721	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	EPHA2-1419	NM_004431	exon11	c.2008_2009insCA	p.F670fs	.	.	56	13	84	0	.	0	0	0	0	0
FARP2	9855	broad.mit.edu	37	2	242433486	242433487	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	FARP2-93	NM_014808	exon27	c.3111_3112insG	p.D1037fs	GCAGGATGGCCCC	.	398	8	415	0	.	0	0	0	0	0
MAP3K1	4214	bcgsc.ca	37	5	56183244	56183245	+	Frame_Shift_Ins	INS	-	-	TA	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	-	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	MAP3K1-956	NM_005921	exon18	c.4154_4155insTA	p.R1385fs	GACTAAGAATTGC	.	116	15	130	0	.	0	0	0	0	0
TOM1	10043	broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	35723290	35723291	+	Missense_Mutation	DNP	GA	GA	TC	novel		TCGA-P4-A5EA-01A-11D-A28G-10	TCGA-P4-A5EA-11A-11D-A28G-10	GA	GA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none			Illumina HiSeq	0451b7be-d503-4cad-88a1-322496cffb25	5d70fe2b-81f9-4b9e-8410-3ccf2035292a	.	TOM1-91	NM_001135732	exon7	c.A676C	p.EM234DL	CTGGAGATGGTGA	.	72	10	101	1	.	0	0	0	0	0
