Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCA10	10349	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	67183861	67183861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ABCA10	NM_080282	exon20	c.T2291A	p.F764Y	TTTAAGAAGCGAA	.	162.0	35.0	147.0	1.0	.	93
ACAD11	84129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132337601	132337601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACAD11	NM_032169	exon11	c.G1291A	p.E431K	GACCCTCGACTTT	.	238.0	63.0	202.0	0.0	.	91
ACRV1	56	hgsc.bcm.edu;bcgsc.ca	37	11	125542541	125542541	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ACRV1	NM_001612	exon4	c.A745G	p.T249A	TCCTCGTTCCATG	.	88.0	4.0	76.0	0.0	.	90
ADAMTS1	9510	hgsc.bcm.edu;bcgsc.ca	37	21	28212774	28212774	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ADAMTS1	NM_006988	exon5	c.T1486C	p.S496P	GTTTGGAGTCCTC	.	70.0	4.0	64.0	0.0	.	272
ADAMTS6	11174	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	64748641	64748641	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ADAMTS6	NM_197941	exon5	c.G736A	p.V246M	TGCTCACTGATCT	.	324.0	58.0	251.0	0.0	.	226
AGL	178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	100340249	100340249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AGL	NM_000644	exon8	c.G965A	p.R322K	AAAATAGGCGAGT	.	64.0	9.0	57.0	1.0	.	92
AMPD3	272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	10503698	10503698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AMPD3	NM_000480	exon4	c.G542T	p.R181L	ACCACCGCTTCCC	.	69.0	10.0	51.0	0.0	.	291
ANXA13	312	hgsc.bcm.edu;broad.mit.edu	37	8	124705521	124705521	+	Nonsense_Mutation	SNP	C	C	T	rs146521013	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ANXA13	NM_001003954	exon9	c.G681A	p.W227X	AGTGCCCCAGCGG	.	166.0	9.0	90.0	0.0	C|1.000;A|0.000	93
AQP5	362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50357929	50357929	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	AQP5	NM_001651	exon3	c.G583C	p.V195L	GCGGTGGTCATGA	.	107.0	15.0	82.0	0.0	.	90
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157522125	157522125	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ARID1B	NM_020732	exon18	c.C4397A	p.A1466E	TGTGGGCAGCACG	.	126.0	16.0	69.0	0.0	.	154
ATAD2B	54454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	23980414	23980414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATAD2B	NM_017552	exon25	c.C3952A	p.P1318T	TTTCTGGTTTTTC	.	219.0	53.0	186.0	0.0	.	68
ATP11B	23200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	182566270	182566270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ATP11B	NM_014616	exon10	c.C776T	p.A259V	GTGTTGCGGTATA	.	232.0	59.0	190.0	0.0	.	93
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	32613893	32613893	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BIRC6	NM_016252	exon4	c.721delA	p.K241fs	CTCAAGAAAATAA	.	173.0	30.0	171.0	0.0	.	233
BMP5	653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55639030	55639030	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BMP5	NM_021073	exon4	c.A844G	p.N282D	TTACGTTGATACT	.	230.0	32.0	175.0	0.0	.	516
BTBD6	90135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105716119	105716119	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	BTBD6	NM_033271	exon5	c.G568A	p.V190I	GCCTGCGTCCTGC	.	99.0	31.0	50.0	0.0	.	90
C11orf74	119710	hgsc.bcm.edu;bcgsc.ca	37	11	36631742	36631742	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C11orf74	NM_138787	exon2	c.G89G	p.G30G	ATGAGCAAACATA	.	81.0	4.0	57.0	0.0	.	68
C2orf44	80304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	24261849	24261849	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	C2orf44	NM_025203	exon2	c.G516A	p.V172V	TGCCACCACCAGC	.	83.0	21.0	77.0	0.0	.	154
CACNA1B	774	ucsc.edu;mdanderson.org	37	9	140991051	140991051	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNA1B	NM_001243812	exon36	c.A5210G	p.D1737G	AATACGACCCGGC	.	83.0	8.0	69.0	2.0	.	138
CACNB1	782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	37341067	37341067	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CACNB1	NM_199247	exon8	c.C834A	p.I278I	CACCAGGATGATG	.	131.0	23.0	89.0	0.0	.	154
CASR	846	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	121980604	121980604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CASR	NM_001178065	exon4	c.A722T	p.E241V	TCAGTGAACTCAT	.	221.0	20.0	182.0	0.0	.	97
CELSR1	9620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46794440	46794440	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CELSR1	NM_014246	exon11	c.G5507T	p.G1836V	CGGAATCCACGGC	.	71.0	22.0	97.0	0.0	.	525
CLEC18B	497190	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	74452060	74452060	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CLEC18B	NM_001011880	exon3	c.C353G	p.A118G	AAGGACGCCAAGC	.	300.0	79.0	403.0	2.0	.	90
CNTLN	54875	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	17409335	17409335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CNTLN	NM_017738	exon16	c.T2660C	p.I887T	CAATTATTGTAGA	.	295.0	20.0	234.0	1.0	.	91
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228012135	228012135	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COL4A4	NM_000092	exon2	c.G65A	p.G22D	CAGGGACCTGTGG	.	56.0	8.0	62.0	0.0	.	142
COPS5	10987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67974167	67974167	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	COPS5	NM_006837	exon1	c.C65T	p.A22V	CTCTGAGCTTCCT	.	92.0	7.0	71.0	0.0	.	660
CPNE4	131034	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	131624109	131624109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CPNE4	NM_130808	exon2	c.A179T	p.E60V	CCTACCTCAAACC	.	133.0	27.0	126.0	0.0	.	92
CPSF1	29894	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	8	145634528	145634528	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CPSF1	NM_013291	exon2	c.C15A	p.Y5X	CTGTTTGTACACG	.	30.0	8.0	42.0	0.0	.	91
CRISPLD1	83690	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	75927121	75927121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CRISPLD1	NM_031461	exon6	c.G701A	p.G234D	GAGGGGGCTGTAG	.	143.0	31.0	141.0	0.0	.	91
CSN3	1448	broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	71115098	71115098	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CSN3	NM_005212	exon4	c.T471C	p.T157T	AGTCACTCCAGAA	.	115.0	12.0	77.0	1.0	.	93
CUL1	8454	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148456419	148456422	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	CTGT	CTGT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	CUL1	NM_003592	exon5	c.507_510del	p.169_170del	GAGAGACTGTCTG	.	184.0	29.0	125.0	0.0	.	226
DDX56	54606	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	44612257	44612257	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DDX56	NM_001257189	exon4	c.G470T	p.R157L	GAGTCACGAAGTT	.	209.0	51.0	133.0	0.0	.	227
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	49936572	49936572	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DEFB113	NM_001037729	exon2	c.A67T	p.K23X	TTTTTTTCTGTGG	.	97.0	21.0	99.0	0.0	.	90
DEFB128	245939	broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	168643	168643	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DEFB128	NM_001037732	exon2	c.G166A	p.D56N	CTTCATCATTAGC	.	459.0	108.0	321.0	2.0	.	135
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95556981	95556981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DICER1	NM_030621	exon28	c.G5623A	p.D1875N	TCCCGTCGTAAGT	.	326.0	118.0	211.0	0.0	.	961
DNAH14	127602	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	225525167	225525167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DNAH14	NM_001373	exon65	c.C10001T	p.A3334V	AAAATGCTATGAA	.	331.0	59.0	283.0	0.0	.	23
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84932627	84932627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DNAH6	NM_001370	exon52	c.C8483A	p.A2828E	CATCAGCAAAGCA	.	105.0	19.0	65.0	0.0	.	69
DOK5	55816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	53226977	53226977	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DOK5	NM_018431	exon6	c.A650C	p.E217A	ACGGGGAGGCCAT	.	171.0	20.0	143.0	0.0	.	227
DSE	29940	hgsc.bcm.edu;broad.mit.edu	37	6	116757465	116757465	+	Missense_Mutation	SNP	G	G	C	rs141851816	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DSE	NM_001080976	exon6	c.G1834C	p.G612R	AGAGATGGTCTCT	.	135.0	6.0	52.0	0.0	G|1.000;A|0.000	91
DYNC2H1	79659	hgsc.bcm.edu;bcgsc.ca	37	11	103027464	103027464	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	DYNC2H1	NM_001377	exon26	c.A4092G	p.E1364E	AAAAGAACAGACA	.	81.0	4.0	67.0	0.0	.	68
ECE1	1889	broad.mit.edu;bcgsc.ca	37	1	21599363	21599363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ECE1	NM_001397	exon4	c.A322G	p.T108A	AGCTGGTCACTGA	.	165.0	7.0	131.0	2.0	.	93
EPPK1	83481	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	8	144940354	144940354	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	EPPK1	NM_031308	exon1	c.C7068T	p.R2356R	GGGCACGCGGTGG	.	22.0	10.0	23.0	0.0	.	25
ERCC4	2072	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	14041704	14041704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ERCC4	NM_005236	exon11	c.T2251C	p.Y751H	TCCCGCTACTACA	.	85.0	33.0	82.0	1.0	.	665
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	50281167	50281167	+	Splice_Site	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAIM2	NM_012306	exon12	c.801+2T>A	.	ACACTCACCAATG	.	47.0	10.0	32.0	0.0	.	230
FAM208A	23272	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	56680996	56680996	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001112736	exon14	c.C1769T	p.S590L	GGAGCTGAGTATA	.	241.0	31.0	201.0	0.0	.	.
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92616495	92616495	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FAT3	NM_001008781	exon23	c.C12873A	p.A4291A	CCCCGCCGTGTCA	.	25.0	10.0	36.0	0.0	.	73
FATE1	89885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	150884642	150884642	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FATE1	NM_033085	exon1	c.A51G	p.A17A	CCTGGCAGAAGAA	.	146.0	39.0	175.0	0.0	.	131
FCAMR	83953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207133090	207133090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FCAMR	NM_001170631	exon7	c.A1507G	p.M503V	CCAGCATGGTAGA	.	88.0	23.0	93.0	0.0	.	91
FEV	54738	hgsc.bcm.edu;broad.mit.edu	37	2	219849754	219849754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	FEV	NM_017521	exon1	c.A44G	p.Y15C	GGCAGGTACATGT	.	73.0	4.0	48.0	0.0	.	846
GABRQ	55879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	151815446	151815446	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GABRQ	NM_018558	exon4	c.A344C	p.K115T	CTTGGAAAGATTC	.	149.0	61.0	179.0	0.0	.	133
GBF1	8729	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	104125298	104125298	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GBF1	NM_001199378	exon18	c.A2251G	p.M751V	AAGAAGATGATTG	.	117.0	6.0	131.0	0.0	.	91
GFM2	84340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	74037421	74037421	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GFM2	NM_032380	exon11	c.A863G	p.D288G	TCATCATCCAAAT	.	420.0	97.0	327.0	1.0	.	90
GLA	2717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100658874	100658874	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GLA	NM_000169	exon2	c.C294A	p.P98P	TCTTTGGGGAGCC	.	99.0	36.0	135.0	0.0	.	130
GOLGA2	2801	hgsc.bcm.edu;mdanderson.org	37	9	131020812	131020812	+	Missense_Mutation	SNP	C	C	A	rs143073995	byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GOLGA2	NM_004486	exon21	c.G2130T	p.E710D	CTCCTCCTCCTCA	.	42.0	8.0	32.0	0.0	C|0.990;A|0.010	91
GPR132	29933	hgsc.bcm.edu;bcgsc.ca	37	14	105517686	105517686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR132	NM_013345	exon4	c.T788A	p.L263H	TTGACGAGGAGAA	.	193.0	41.0	59.0	0.0	.	92
GPR132	29933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	105517685	105517686	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GPR132	NM_013345	exon4	c.789_790insA	p.L263fs	TTTGACGAGGAGA	.	193.0	39.0	59.0	0.0	.	92
GRAMD1B	57476	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	123489856	123489856	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRAMD1B	NM_020716	exon19	c.2051delC	p.S684fs	TAGAGTCCCAACA	.	51.0	14.0	50.0	0.0	.	69
GRM3	2913	broad.mit.edu;bcgsc.ca	37	7	86469096	86469096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	GRM3	NM_000840	exon4	c.T2266C	p.F756L	TACGCCTTCAAAA	.	135.0	6.0	86.0	1.0	.	528
HIST1H4K	8362	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	27799271	27799271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HIST1H4K	NM_003541	exon1	c.G35T	p.G12V	CCTTTGCCAAGAC	.	317.0	53.0	275.0	1.0	.	90
HPS1	3257	hgsc.bcm.edu;broad.mit.edu	37	10	100179909	100179909	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HPS1	NM_000195	exon18	c.T1750C	p.S584P	TCAGAGACCAGAC	.	75.0	4.0	69.0	0.0	.	91
HRG	3273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	186383833	186383833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HRG	NM_000412	exon1	c.A13G	p.I5V	GCACTCATTGCAG	.	111.0	26.0	106.0	0.0	.	91
HSPG2	3339	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22159859	22159872	+	Frame_Shift_Del	DEL	AAGTAGGGCACCAC	AAGTAGGGCACCAC	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	AAGTAGGGCACCAC	AAGTAGGGCACCAC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	HSPG2	NM_005529	exon80	c.10984_10997del	p.3662_3666del	TGCGTGAAGTAGG	.	108.0	10.0	85.0	0.0	.	141
IFT172	26160	hgsc.bcm.edu;bcgsc.ca	37	2	27679434	27679434	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IFT172	NM_015662	exon30	c.A3315G	p.R1105R	AAGCAGTCTAACT	.	81.0	4.0	74.0	0.0	.	154
IGDCC3	9543	broad.mit.edu;ucsc.edu;mdanderson.org	37	15	65621829	65621829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IGDCC3	NM_004884	exon13	c.C2104T	p.R702W	GGCCCCGCTGTCC	.	39.0	6.0	28.0	1.0	.	93
IKBKB	3551	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	42176090	42176090	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IKBKB	NM_001556	exon13	c.C1261G	p.L421V	AGGAATCTCGCCT	.	77.0	12.0	100.0	0.0	.	1164
IL1F10	84639	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	113831957	113831957	+	Silent	SNP	G	G	T	rs199770962		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	IL1F10	NM_173161	exon3	c.G84T	p.L28L	GCTGCTGGTGGGA	.	140.0	11.0	135.0	0.0	G|0.999;T|0.001	91
ITGA7	3679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56088716	56088716	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ITGA7	NM_001144996	exon15	c.G2054A	p.G685E	GGCTGCCCACTCA	.	61.0	6.0	49.0	0.0	.	229
JAK1	3716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65335078	65335078	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	JAK1	NM_002227	exon6	c.A563T	p.E188V	AGACACTCGTTCT	.	123.0	35.0	100.0	0.0	.	3900
KCND1	3750	hgsc.bcm.edu;bcgsc.ca	37	X	48823420	48823420	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCND1	NM_004979	exon2	c.A1215G	p.P405P	AATGACTGGCACA	.	88.0	6.0	82.0	0.0	.	133
KCNK9	51305	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	140630800	140630800	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KCNK9	NM_016601	exon2	c.C826T	p.P276S	CCTCAGGGATGTG	.	33.0	8.0	44.0	1.0	.	93
KDM2A	22992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66982895	66982895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KDM2A	NM_012308	exon7	c.A571T	p.M191L	TTGGAGATGCAGT	.	81.0	18.0	66.0	0.0	.	661
KIRREL	55243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158061246	158061246	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	KIRREL,NS,carcinoma,0	KIRREL	NM_018240	exon11	c.C1371T	p.T457T	GCTCACCATCAAC	.	64.0	12.0	57.0	0.0	.	91
KRT86	3892	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	52699516	52699516	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	KRT86	NM_002284	exon6	c.G970T	p.E324X	ATCAACGAGCTGA	.	127.0	24.0	93.0	1.0	.	91
KRTAP29-1	100533177	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39459053	39459053	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001257309	exon1	c.C51T	p.P17P	GATGGTGGGCACA	.	58.0	13.0	57.0	0.0	.	.
LCE1E	353135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152759984	152759984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LCE1E	NM_178353	exon2	c.C209A	p.S70Y	GCAGCTCTGGGGG	.	95.0	46.0	134.0	0.0	.	90
LCT	3938	hgsc.bcm.edu;bcgsc.ca	37	2	136566972	136566972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LCT	NM_002299	exon8	c.G2945A	p.R982Q	AAAATCCGAGACC	.	85.0	5.0	68.0	0.0	.	101
LOXL4	84171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	100013493	100013493	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LOXL4	NM_032211	exon11	c.G1652A	p.R551H	AGCGGGCGGTCCT	.	37.0	5.0	39.0	0.0	.	230
LPPR3	0	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	814544	814544	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_024888	exon6	c.T805C	p.F269L	TGGCAAAGGCGAA	.	32.0	4.0	32.0	0.0	.	.
LRP1	4035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57577928	57577928	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRP1	NM_002332	exon37	c.C5990T	p.S1997F	ATGGCTCCTTCCG	.	104.0	12.0	74.0	0.0	.	596
LRRC46	90506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	45914305	45914305	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LRRC46	NM_033413	exon8	c.C785T	p.P262L	CAGTCCCTGAGGC	.	114.0	6.0	86.0	0.0	.	91
LTV1	84946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	144184607	144184607	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	LTV1	NM_032860	exon11	c.A1371G	p.R457R	GAAAAGAAGGCAA	.	260.0	77.0	201.0	0.0	.	91
MAP4K5	11183	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	50923302	50923302	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MAP4K5	NM_006575	exon14	c.T947C	p.I316T	CGAATGATTGCAT	.	127.0	7.0	64.0	0.0	.	546
MICAL3	57553	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	18299504	18299504	+	Silent	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MICAL3	NM_015241	exon27	c.C5397G	p.L1799L	GCTGGAGAGGTCT	.	31.0	14.0	23.0	1.0	.	68
MORC1	27136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108723940	108723940	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MORC1	NM_014429	exon19	c.G1990T	p.V664F	GTTTGACATTTTC	.	119.0	25.0	108.0	0.0	.	98
MS4A6A	64231	hgsc.bcm.edu;bcgsc.ca	37	11	59947379	59947379	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MS4A6A	NM_001247999	exon4	c.T291C	p.A97A	GAAGGAAGCAGAT	.	121.0	5.0	95.0	0.0	.	90
MSRB2	22921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	23393130	23393130	+	Missense_Mutation	SNP	C	C	G	rs201493683	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MSRB2	NM_012228	exon2	c.C176G	p.T59S	AACTAACCCCGGA	.	117.0	25.0	101.0	0.0	C|0.999;T|0.001	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu	37	3	195511811	195511811	+	Missense_Mutation	SNP	G	G	T	rs71291864	bycluster;byfrequency	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MUC4	NM_018406	exon2	c.C6640A	p.P2214T	AGGAAGGGCTGGT	.	118.0	6.0	139.0	0.0	CGT|0.250;GGC|0.250;GGCT|0.250;TGTC|0.250	90
MXRA5	25878	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	3241431	3241431	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MXRA5	NM_015419	exon5	c.T2295A	p.F765L	AGATTCAAACACT	.	210.0	81.0	280.0	0.0	.	136
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	48603556	48603556	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYCBPAP	NM_032133	exon14	c.C2226T	p.S742S	GGACAGCACCAAG	.	65.0	22.0	55.0	0.0	.	230
MYH10	4628	hgsc.bcm.edu;bcgsc.ca	37	17	8480586	8480586	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	MYH10	NM_005964	exon5	c.T601C	p.S201P	TATGTGAAGAAGC	.	87.0	4.0	89.0	0.0	.	92
NCAM1	4684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	113085206	113085206	+	Silent	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	NCAM1	NM_001242608	exon9	c.T1032A	p.S344S	GACTTCTACCCGG	.	112.0	11.0	81.0	0.0	.	23
NXPE3	91775	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	101540640	101540640	+	Missense_Mutation	SNP	A	A	G	rs200530322		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_145037	exon8	c.A1522G	p.I508V	GACACCATCCTTC	.	156.0	42.0	141.0	1.0	A|1.000;G|0.000	.
OBSCN	84033	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	228511085	228511085	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OBSCN	NM_001271223	exon67	c.A18301G	p.S6101G	CCTGTGAGCTTTG	.	122.0	5.0	90.0	0.0	.	403
ODF2	4957	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	131256869	131256872	+	Frame_Shift_Del	DEL	TGAG	TGAG	-	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	TGAG	TGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ODF2	NM_153435	exon17	c.2025_2028del	p.675_676del	GCTGGCTGAGTGC	.	102.0	22.0	63.0	0.0	.	69
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	132527021	132527021	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OPCML	NM_002545	exon2	c.A361T	p.N121Y	GATGATTGTCTGT	.	243.0	54.0	175.0	0.0	.	93
OPLAH	26873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	145112137	145112137	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OPLAH	NM_017570	exon11	c.G1509A	p.L503L	CATGCCCAGGGCC	.	43.0	9.0	77.0	0.0	.	68
OR51G2	81282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936238	4936238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR51G2	NM_001005238	exon1	c.T656G	p.I219S	AAGAGGATGAGCA	.	116.0	32.0	101.0	0.0	.	70
OR51I1	390063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5462447	5462447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR51I1	NM_001005288	exon1	c.C298A	p.L100M	GGACCAGGCAAGC	.	139.0	37.0	89.0	0.0	.	69
OR6B3	150681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240984862	240984862	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	OR6B3	NM_173351	exon1	c.C628G	p.P210A	GGAGTGGAAACAC	.	279.0	55.0	256.0	0.0	.	68
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82389961	82389961	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PCLO	NM_033026	exon24	c.T15282C	p.S5094S	CTGAAGAGAATGT	.	508.0	113.0	390.0	0.0	.	29
PDCD4	27250	hgsc.bcm.edu;bcgsc.ca	37	10	112641040	112641040	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDCD4	NM_014456	exon3	c.T93C	p.A31A	AAATGCTGGGACT	.	91.0	4.0	92.0	0.0	.	291
PDIA5	10954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	122849447	122849447	+	Silent	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PDIA5	NM_006810	exon11	c.C894A	p.V298V	CCTCGTCATGTTC	.	121.0	26.0	113.0	0.0	.	91
PEG3	5178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57334962	57334962	+	Silent	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PEG3	NM_001146184	exon4	c.C480T	p.F160F	ACCACTGAAAGAA	.	70.0	15.0	47.0	0.0	.	164
PHF11	51131	hgsc.bcm.edu;bcgsc.ca	37	13	50080776	50080776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PHF11	NM_001040443	exon2	c.T100C	p.F34L	GGTGTCTTTCAGG	.	54.0	4.0	45.0	0.0	.	90
PIK3R2	5296	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	18266738	18266738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PIK3R2	NM_005027	exon2	c.C49T	p.R17W	TTCCGCCGGGAGC	.	16.0	7.0	17.0	0.0	.	1311
PKP4	8502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	159481873	159481873	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PKP4	NM_001005476	exon7	c.C1087T	p.Q363X	ATGGAGCAATTCG	.	268.0	48.0	223.0	0.0	.	97
PPP2R3C	55012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	35577440	35577440	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PPP2R3C	NM_017917	exon5	c.A407T	p.Q136L	AAAAATTGCCTAA	.	102.0	17.0	53.0	0.0	.	227
PTPRM	5797	hgsc.bcm.edu;bcgsc.ca	37	18	8384641	8384641	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	PTPRM	NM_001105244	exon30	c.A4001G	p.E1334G	TGGAAGAGGACAT	.	128.0	6.0	94.0	0.0	.	228
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	81014071	81014071	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145026	exon29	c.T5012A	p.I1671N	TCTACATCATAGG	.	177.0	35.0	165.0	0.0	.	.
RAB37	326624	ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72741039	72741039	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	RAB37	NM_001163989	exon7	c.C475G	p.R159G	GTGATCCGTTCCG	.	150.0	38.0	122.0	2.0	.	230
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	114424946	114424946	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001145346	exon1	c.C942T	p.A314A	CGCTGCCCCTGTG	.	130.0	11.0	144.0	0.0	.	.
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148846461	148846461	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SASH1	NM_015278	exon11	c.A1244G	p.N415S	TGACGAATCGCTC	.	67.0	17.0	61.0	0.0	.	90
SCFD1	23256	hgsc.bcm.edu;bcgsc.ca	37	14	31107344	31107345	+	Frame_Shift_Ins	INS	-	-	ACTAT	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCFD1	NM_016106	exon5	c.326_327insACTAT	p.Q109fs	GAAATCAACTATA	.	206.0	50.0	151.0	1.0	.	226
SCN11A	11280	hgsc.bcm.edu;bcgsc.ca	37	3	38921489	38921489	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SCN11A	NM_014139	exon19	c.A3345G	p.G1115G	ATACTTTCCAAAT	.	88.0	4.0	80.0	0.0	.	99
SETX	23064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135204112	135204112	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SETX	NM_015046	exon10	c.T2873C	p.I958T	CTGTCTATCTGAG	.	206.0	29.0	173.0	0.0	.	93
SLBP	7884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	1701341	1701341	+	Missense_Mutation	SNP	G	G	C	rs200085408		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLBP	NM_006527	exon5	c.C429G	p.N143K	CCCATAGTTGATC	.	264.0	49.0	195.0	0.0	G|0.999;C|0.001	90
SLC38A2	54407	hgsc.bcm.edu;bcgsc.ca	37	12	46756927	46756927	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC38A2	NM_018976	exon13	c.A1056G	p.E352E	AACATGTTCTACA	.	75.0	4.0	64.0	0.0	.	226
SLC50A1	55974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155110121	155110121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SLC50A1	NM_018845	exon4	c.G367A	p.E123K	AACCCTGAGGCCC	.	97.0	28.0	68.0	0.0	.	69
SLC9C2	284525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	173476077	173476077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_178527	exon25	c.T3143G	p.I1048S	ACAATGATAACAA	.	184.0	38.0	169.0	0.0	.	.
SNAP29	9342	hgsc.bcm.edu;bcgsc.ca	37	22	21235343	21235343	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNAP29	NM_004782	exon3	c.A441G	p.K147K	ATTGAAAGAAGCT	.	84.0	4.0	101.0	0.0	.	278
SNAPC1	6617	hgsc.bcm.edu;bcgsc.ca	37	14	62233751	62233751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNAPC1	NM_003082	exon2	c.A286G	p.K96E	AAACAAAAGGTAA	.	86.0	4.0	97.0	0.0	.	90
SNRK	54861	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43344896	43344896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SNRK	NM_017719	exon3	c.G201T	p.M67I	ATGCATGAAACTA	.	163.0	49.0	146.0	1.0	.	815
SOGA2	23255	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	8813094	8813094	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_015210	exon12	c.G2722C	p.V908L	AGCCTGGTCATGG	.	156.0	14.0	135.0	0.0	.	.
SP4	6671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21469601	21469601	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SP4	NM_003112	exon3	c.A818G	p.N273S	TAAACAACGTGGC	.	174.0	44.0	130.0	0.0	.	95
SRCAP	10847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30750366	30750366	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SRCAP	NM_006662	exon34	c.C9005G	p.P3002R	CGTCCCCACCCAA	.	84.0	6.0	54.0	0.0	.	94
SULT1A2	6799	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	28606943	28606943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	SULT1A2	NM_001054	exon3	c.G202A	p.E68K	ACTTTTCCAGGTC	.	121.0	47.0	99.0	0.0	.	90
TAF1	6872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	70607151	70607151	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TAF1	NM_004606	exon15	c.A2327G	p.H776R	ATCTTCATAAGAT	.	235.0	86.0	256.0	0.0	.	900
TBCD	6904	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80888501	80888501	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TBCD	NM_005993	exon33	c.A3095G	p.D1032G	TTGAGGACAACCT	.	107.0	23.0	83.0	1.0	.	22
TECTA	7007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	121058616	121058616	+	Silent	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TECTA	NM_005422	exon20	c.C6075T	p.T2025T	CGTCACCGTCTTT	.	89.0	24.0	93.0	0.0	.	225
TEK	7010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	27190548	27190548	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TEK	NM_000459	exon10	c.C1349G	p.A450G	TGAATGCCCCAAA	.	183.0	17.0	184.0	0.0	.	1584
TEN1	100134934	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	73996268	73996268	+	Silent	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001113324	exon4	c.G297T	p.G99G	GGAGGGGATGAAC	.	67.0	18.0	46.0	0.0	.	.
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	78775891	78775891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	.	NM_001098816	exon6	c.G385A	p.V129M	GACGCACGGGGTG	.	48.0	12.0	45.0	0.0	.	.
TEX15	56154	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	30701385	30701385	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TEX15	NM_031271	exon1	c.C5149T	p.R1717X	AGCTTCGCAATGT	.	91.0	30.0	99.0	1.0	.	97
TMC3	342125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	81625157	81625157	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMC3	NM_001080532	exon22	c.C2906A	p.A969D	TGAGGAGCCCGAC	.	72.0	18.0	47.0	0.0	.	70
TMEM87A	25963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42556385	42556385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	TMEM87A	NM_001110503	exon4	c.T308G	p.L103W	AAATACAACTCTA	.	220.0	69.0	211.0	0.0	.	91
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578478	7578478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	TP53,NS,carcinoma,-1	TP53	NM_000546	exon5	c.C452A	p.P151H	GGCGGGGGTGTGG	.	68.0	17.0	61.0	0.0	.	70225
USP30	84749	hgsc.bcm.edu;bcgsc.ca	37	12	109519740	109519740	+	Silent	SNP	T	T	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	USP30	NM_032663	exon9	c.T783C	p.G261G	GTAGGGTCACCCA	.	155.0	7.0	94.0	0.0	.	658
USP4	7375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49362451	49362451	+	Missense_Mutation	SNP	C	C	A	rs117411669	alternate_allele	TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	USP4	NM_199443	exon5	c.G509T	p.R170L	AGCTTCCGCATCT	.	150.0	42.0	131.0	0.0	C|0.999;T|0.001	660
VPS13B	157680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	100829851	100829851	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	VPS13B	NM_017890	exon45	c.A8256C	p.Q2752H	TGGTCAAGATGGA	.	232.0	49.0	147.0	0.0	.	301
WDHD1	11169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	55467661	55467661	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDHD1	NM_007086	exon9	c.G743A	p.G248D	ATACTACCTGCAG	.	306.0	128.0	207.0	0.0	.	91
WDR1	9948	hgsc.bcm.edu;bcgsc.ca	37	4	10099482	10099482	+	Silent	SNP	A	A	G	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WDR1	NM_017491	exon5	c.T411C	p.S137S	CACAGAAGAGCCA	.	92.0	4.0	57.0	0.0	.	48
WNK2	65268	hgsc.bcm.edu;broad.mit.edu	37	9	96021717	96021717	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	WNK2	NM_006648	exon11	c.C2887A	p.P963T	ACGCTGCCCCCTC	.	21.0	4.0	31.0	0.0	.	765
ZNF318	24149	broad.mit.edu;mdanderson.org	37	6	43325451	43325451	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF318	NM_014345	exon3	c.G601A	p.G201S	CAAGACCCCGAGA	.	106.0	24.0	68.0	0.0	.	157
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21720474	21720474	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF429	NM_001001415	exon4	c.A1619T	p.E540V	AATGTGAAGAATG	.	42.0	10.0	32.0	0.0	.	516
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	32873386	32873386	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF507	NM_001136156	exon6	c.G2374C	p.G792R	CTGTGTGGGTATG	.	196.0	37.0	178.0	0.0	.	230
ZNF541	84215	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48047823	48047823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BD-A3EP-01A-11D-A22F-10	TCGA-BD-A3EP-11A-12D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9cd66ad6-837c-48db-b3a9-ed3e2558eef5	631a4a75-d468-41a0-9bf7-693499a63901	.	ZNF541	.	.	.	.	GAACCGCGGCCAC	.	63.0	20.0	42.0	0.0	.	23
