Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ABCC5	10057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	183655819	183655819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ABCC5	NM_005688	exon26	c.C3724T	p.R1242C	CCAGACGGAAGAG	.	124.0	27.0	126.0	0.0	.	137
ACOT12	134526	hgsc.bcm.edu;bcgsc.ca	37	5	80655835	80655835	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ACOT12	NM_130767	exon5	c.T383C	p.L128P	GTTAGAAGTGTGA	.	83.0	4.0	73.0	0.0	.	92
ADAMTSL1	92949	hgsc.bcm.edu;bcgsc.ca	37	9	18636002	18636002	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ADAMTSL1	NM_052866	exon6	c.T663C	p.G221G	AAAAGGTCCTGAT	.	98.0	4.0	163.0	0.0	.	230
AFF1	4299	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88052964	88052964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AFF1	NM_001166693	exon18	c.T3121A	p.S1041T	TTAAAATCCTTCT	.	104.0	19.0	181.0	0.0	.	289
AGPAT4	56895	hgsc.bcm.edu;bcgsc.ca	37	6	161567572	161567572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT4	NM_020133	exon7	c.A827G	p.K276R	TAGAGCTTGTGCA	.	64.0	4.0	68.0	0.0	.	90
AGPAT6	137964	hgsc.bcm.edu;bcgsc.ca	37	8	41472557	41472557	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AGPAT6	NM_178819	exon10	c.T1043C	p.V348A	ACCCTGTTGCTAT	.	90.0	5.0	124.0	0.0	.	90
AMPD2	271	hgsc.bcm.edu;bcgsc.ca	37	1	110173318	110173318	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	AMPD2	NM_004037	exon17	c.A2333G	p.E778G	TGATGGAGGAGTA	.	68.0	4.0	94.0	0.0	.	292
ANK3	288	hgsc.bcm.edu;bcgsc.ca	37	10	61843261	61843261	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANK3	NM_001204404	exon34	c.T4192C	p.F1398L	TGGAAAATGGCAG	.	59.0	4.0	88.0	0.0	.	107
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92028083	92028083	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ANKIB1	NM_019004	exon20	c.T3090C	p.S1030S	TGTCAGTGAAGGT	.	129.0	51.0	103.0	0.0	.	432
ARAP2	116984	hgsc.bcm.edu;bcgsc.ca	37	4	36069848	36069848	+	Missense_Mutation	SNP	T	T	C	rs202134005	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP2	NM_015230	exon33	c.A4796G	p.E1599G	ACGGACTCTTTAT	.	57.0	4.0	59.0	0.0	T|0.999;A|0.001	93
ARAP3	64411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	141059772	141059772	+	Silent	SNP	G	G	A	rs146312944		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ARAP3	NM_022481	exon2	c.C282T	p.P94P	CGGCACGGGCTTA	.	134.0	66.0	150.0	0.0	G|1.000;A|0.000	291
ARHGAP35	2909	hgsc.bcm.edu;bcgsc.ca	37	19	47424967	47424967	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_004491	exon1	c.T3035C	p.L1012P	CTAAGCTCTCTAT	.	123.0	5.0	113.0	0.0	.	.
ASAP2	8853	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	9533657	9533657	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASAP2	NM_003887	exon24	c.C2565A	p.S855R	GCCCAGCGTAATG	.	80.0	12.0	71.0	0.0	.	90
ASCC3	10973	hgsc.bcm.edu;bcgsc.ca	37	6	101109765	101109765	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ASCC3	NM_006828	exon16	c.A2620G	p.S874G	AATGGCTGAGTTT	.	110.0	5.0	108.0	0.0	.	96
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108138031	108138031	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ATM	NM_000051	exon17	c.G2600C	p.S867T	GTGTTAGTGATGC	.	68.0	31.0	124.0	0.0	.	3419
BAG6	7917	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	31610072	31610072	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BAG6	NM_004639	exon15	c.C2062T	p.P688S	CTCCAGGACTCCC	.	102.0	7.0	66.0	0.0	.	154
BAZ2B	29994	broad.mit.edu;mdanderson.org	37	2	160295184	160295184	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BAZ2B	NM_013450	exon8	c.A923G	p.D308G	TTTGGGTCTGAAA	.	18.0	3.0	25.0	0.0	.	94
BBS5	129880	hgsc.bcm.edu;bcgsc.ca	37	2	170343593	170343593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BBS5	NM_152384	exon3	c.A157G	p.T53A	TTGGTAACAAATT	.	83.0	4.0	87.0	0.0	.	90
BCL11A	53335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	60687558	60687558	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL11A	NM_022893	exon4	c.A2489C	p.N830T	ATATCATTATTCA	.	50.0	31.0	84.0	0.0	.	1149
BCL7A	605	hgsc.bcm.edu;bcgsc.ca	37	12	122492735	122492735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BCL7A	NM_020993	exon5	c.A464G	p.Q155R	ATTCACAGTCCTC	.	75.0	4.0	68.0	0.0	.	685
BICD1	636	hgsc.bcm.edu;bcgsc.ca	37	12	32369322	32369322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon2	c.A355G	p.S119G	AAACAGAGCCGGG	.	116.0	5.0	127.0	0.0	.	153
BICD1	636	hgsc.bcm.edu;bcgsc.ca	37	12	32520657	32520657	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BICD1	NM_001714	exon9	c.A2818G	p.R940G	GCCGGGAGGCAAG	.	73.0	4.0	60.0	0.0	.	153
BRWD1	54014	hgsc.bcm.edu;bcgsc.ca	37	21	40590495	40590495	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BRWD1	NM_018963	exon30	c.T3474C	p.G1158G	TTTCTGACCCCAT	.	86.0	5.0	92.0	0.0	.	94
BZRAP1	9256	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	56388536	56388536	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	BZRAP1	NM_004758	exon19	c.G3120T	p.L1040L	CTCCACCAGTACA	.	115.0	84.0	109.0	1.0	.	229
C10orf137	26098	hgsc.bcm.edu;bcgsc.ca	37	10	127431772	127431772	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C10orf137	NM_001202438	exon18	c.A2517G	p.R839R	AAAGAGAATGGGT	.	84.0	4.0	99.0	0.0	.	590
C1orf173	127254	hgsc.bcm.edu;bcgsc.ca	37	1	75078418	75078418	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C1orf173	NM_001002912	exon9	c.T1076C	p.V359A	CTGTTCACCTGCA	.	61.0	5.0	68.0	0.0	.	94
C5AR2	27202	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47844736	47844736	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001271750	exon2	c.C680A	p.A227E	GCTGGGCAGCCCG	.	38.0	16.0	27.0	0.0	.	.
C9orf41	138199	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	77614715	77614715	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	C9orf41	NM_152420	exon4	c.T662C	p.L221P	TAACCTAGCATAG	.	24.0	4.0	43.0	0.0	.	92
CCAR1	55749	hgsc.bcm.edu;bcgsc.ca	37	10	70515291	70515291	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCAR1	NM_018237	exon13	c.A1623G	p.Q541Q	CACACAATGGTAA	.	95.0	4.0	160.0	0.0	.	159
CCDC39	339829	hgsc.bcm.edu;bcgsc.ca	37	3	180361933	180361933	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC39	NM_181426	exon12	c.T1640C	p.L547P	TTATCAAGTTCTT	.	81.0	5.0	97.0	0.0	.	72
CCDC6	8030	hgsc.bcm.edu;bcgsc.ca	37	10	61612353	61612353	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC6	NM_005436	exon2	c.A411G	p.E137E	TTCTTCTTCTTTC	.	84.0	4.0	128.0	0.0	.	686
CCDC8	83987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46915065	46915065	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC8	NM_032040	exon1	c.C1003G	p.Q335E	CCCTCTGATTATC	.	160.0	20.0	205.0	0.0	.	93
CCDC88C	440193	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	91770230	91770230	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCDC88C	NM_001080414	exon20	c.C3450T	p.N1150N	GCTTTCGTTCTCC	.	76.0	5.0	104.0	0.0	.	25
CCK	885	hgsc.bcm.edu;bcgsc.ca	37	3	42305118	42305118	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CCK	NM_000729	exon4	c.A5G	p.N2S	CCGCTGTTCATGG	.	51.0	4.0	52.0	0.0	.	514
CCZ1B	221960	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	6851599	6851599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_198097	exon10	c.A938T	p.H313L	ATTAAATGGAGCT	.	254.0	39.0	250.0	1.0	.	.
CDC7	8317	hgsc.bcm.edu;bcgsc.ca	37	1	91978625	91978625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G583A	p.V195I	GCCTTGGTAGACT	.	73.0	4.0	166.0	0.0	.	1125
CDC7	8317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91978829	91978829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDC7	NM_001134419	exon7	c.G787T	p.A263S	ACAAATGCACAAA	.	125.0	20.0	192.0	0.0	.	1125
CDCP1	64866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45153758	45153758	+	Missense_Mutation	SNP	C	C	G	rs149422328	alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDCP1	NM_178181	exon3	c.G472C	p.G158R	TGACTCCGTCTGG	.	60.0	28.0	94.0	0.0	C|1.000;T|0.000	117
CDH9	1007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	26906841	26906841	+	Silent	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CDH9	NM_016279	exon4	c.G630T	p.V210V	TGGGTCCACTGAA	.	73.0	20.0	87.0	0.0	.	99
CENPW	387103	hgsc.bcm.edu;bcgsc.ca	37	6	126661441	126661441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CENPW	NM_001012507	exon1	c.T22C	p.S8P	ATAGTCTCCCAGA	.	68.0	4.0	66.0	0.0	.	90
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93489406	93489406	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.G1337C	p.S446T	TCCACAGTAGGAA	.	186.0	68.0	276.0	1.0	.	229
CHD2	1106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	93489423	93489423	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD2	NM_001042572	exon12	c.A1354G	p.T452A	TCAAAAACCATCC	.	199.0	76.0	288.0	0.0	.	229
CHD7	55636	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	61757511	61757511	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHD7	NM_017780	exon22	c.C4939G	p.L1647V	ACCATCCTGGTGT	.	99.0	5.0	78.0	0.0	.	141
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	240072218	240072218	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CHRM3	NM_000740	exon5	c.G1467A	p.A489A	GAAAGCGGCCCAG	.	147.0	36.0	148.0	0.0	.	95
CNOT2	4848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70724192	70724192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNOT2	NM_001199302	exon7	c.C512A	p.P171Q	GCTCGCCAAGCAT	.	126.0	70.0	199.0	0.0	.	226
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125192079	125192079	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CNTNAP5	NM_130773	exon5	c.T548G	p.F183C	CTGACTTTGATGG	.	185.0	86.0	232.0	0.0	.	524
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130098302	130098302	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_153264	exon4	c.C709A	p.L237I	GCTGACCTCGTGT	.	201.0	90.0	163.0	0.0	.	.
CR1	1378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	207679429	207679429	+	Splice_Site	SNP	G	G	A	rs199647026		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CR1	NM_000573	exon2	c.301+1G>A	.	GCAGACGTAAGTA	.	117.0	30.0	139.0	0.0	.	93
CREB3	10488	hgsc.bcm.edu;bcgsc.ca	37	9	35733445	35733445	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CREB3	NM_006368	exon4	c.A398G	p.E133G	AGAAGGAGGGGCT	.	84.0	4.0	125.0	0.0	.	90
CYFIP2	26999	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156755023	156755023	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	CYFIP2	NM_001037332	exon19	c.C2122G	p.Q708E	GCAGACCAGATCT	.	108.0	21.0	115.0	0.0	.	22
DCHS2	54798	hgsc.bcm.edu;bcgsc.ca	37	4	155278418	155278418	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DCHS2	NM_017639	exon6	c.A753G	p.E251E	CATTACTTCCTTG	.	33.0	4.0	42.0	0.0	.	94
DDX60L	91351	hgsc.bcm.edu;bcgsc.ca	37	4	169282339	169282339	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon37	c.A4952G	p.K1651R	AAACACTTTAAAA	.	94.0	4.0	113.0	0.0	.	69
DDX60L	91351	hgsc.bcm.edu;bcgsc.ca	37	4	169317190	169317190	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DDX60L	NM_001012967	exon27	c.A3577G	p.K1193E	GAATCTTCAGATT	.	146.0	6.0	207.0	0.0	.	69
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	76503588	76503588	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH17	NM_173628	exon28	c.G4536C	p.Q1512H	CGGGAGCTGGGTG	.	151.0	30.0	129.0	0.0	.	142
DNAH6	1768	hgsc.bcm.edu;bcgsc.ca	37	2	84924794	84924794	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAH6	NM_001370	exon47	c.A7620G	p.L2540L	GGTTTTAGCGGCC	.	64.0	4.0	83.0	0.0	.	69
DNAJC25	548645	hgsc.bcm.edu;bcgsc.ca	37	9	114411855	114411855	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DNAJC25	NM_001015882	exon3	c.A612G	p.K204K	AGAAAAAGGCAAA	.	81.0	4.0	118.0	0.0	.	22
DPP10	57628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	116593811	116593811	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DPP10	NM_001178034	exon22	c.A2041C	p.I681L	GCACCTATCACAG	.	118.0	17.0	142.0	0.0	.	142
DSEL	92126	ucsc.edu;bcgsc.ca	37	18	65180906	65180906	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DSEL	NM_032160	exon2	c.T970C	p.F324L	AATAGAACCAAAA	.	43.0	4.0	84.0	0.0	.	157
DST	667	bcgsc.ca;mdanderson.org	37	6	56418422	56418422	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DST	NM_015548	exon42	c.T7299C	p.C2433C	GCTTGCACAGGCC	.	21.0	3.0	30.0	0.0	.	523
DUS4L	11062	hgsc.bcm.edu;bcgsc.ca	37	7	107216859	107216859	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	DUS4L	NM_001270419	exon7	c.A528G	p.E176E	GGCTGAAGCAACA	.	98.0	4.0	69.0	0.0	.	90
EFNA5	1946	hgsc.bcm.edu;broad.mit.edu	37	5	106763128	106763128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EFNA5	NM_001962	exon2	c.C208A	p.P70T	CTTCTGGGACGGA	.	97.0	4.0	123.0	0.0	.	90
EGR3	1960	broad.mit.edu;ucsc.edu	37	8	22548280	22548280	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EGR3	NM_004430	exon2	c.C870T	p.D290D	CAGCTCGTCCGAA	.	48.0	12.0	21.0	1.0	.	90
EHD4	30844	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	42245961	42245961	+	Splice_Site	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EHD4	NM_139265	exon3	c.413+1G>T	.	TCCTTACCGATTC	.	66.0	36.0	77.0	0.0	.	92
EIF4G3	8672	hgsc.bcm.edu;bcgsc.ca	37	1	21221985	21221985	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EIF4G3	NM_001198802	exon15	c.A1859G	p.K620R	GTAGGCTTCCAGG	.	67.0	4.0	86.0	0.0	.	91
EPHX1	2052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226030103	226030103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPHX1	NM_001136018	exon7	c.C968A	p.A323D	TGGCTGCCTATAT	.	111.0	53.0	85.0	0.0	.	281
EPS8	2059	hgsc.bcm.edu;bcgsc.ca	37	12	15774278	15774278	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EPS8	NM_004447	exon21	c.A2442G	p.E814E	AAAAGATTCCACT	.	67.0	6.0	64.0	0.0	.	94
ESR1	2099	hgsc.bcm.edu;bcgsc.ca	37	6	152265434	152265434	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ESR1	NM_000125	exon4	c.T887C	p.L296P	GCCCGCTCATGAT	.	109.0	5.0	99.0	0.0	.	1042
ETAA1	54465	hgsc.bcm.edu;bcgsc.ca	37	2	67632242	67632242	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ETAA1	NM_019002	exon5	c.A2428G	p.S810G	GCTCAGAGCAACC	.	73.0	5.0	77.0	0.0	.	156
EXOC6B	23233	hgsc.bcm.edu;bcgsc.ca	37	2	72707813	72707813	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	EXOC6B	NM_015189	exon17	c.A1732G	p.T578A	TGTTGGTGATAAA	.	76.0	4.0	111.0	0.0	.	68
FAM149A	25854	hgsc.bcm.edu;bcgsc.ca	37	4	187077241	187077241	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM149A	NM_001006655	exon6	c.T471C	p.C157C	TGACTGTGTCAAA	.	71.0	4.0	108.0	0.0	.	90
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177247856	177247856	+	Silent	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM5B	NM_021165	exon7	c.A1170T	p.L390L	GATCCTACGCCGG	.	116.0	49.0	117.0	0.0	.	28
FAM65C	140876	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	49214133	49214133	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM65C	NM_080829	exon14	c.G1762T	p.G588C	GGGAGCCCCCAAA	.	140.0	18.0	109.0	0.0	.	92
FAM81A	145773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59801108	59801108	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM81A	NM_152450	exon6	c.G590A	p.S197N	AGCAGAGCACCAA	.	567.0	149.0	583.0	0.0	.	91
FAM83B	222584	hgsc.bcm.edu;bcgsc.ca	37	6	54805894	54805894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAM83B	NM_001010872	exon5	c.A2125G	p.S709G	TCTAAAAGCATGC	.	78.0	4.0	72.0	0.0	.	96
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	150945475	150945475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FAT2	NM_001447	exon1	c.G3018T	p.R1006S	TAGGGGCCTCCCA	.	154.0	9.0	128.0	0.0	.	96
FER1L5	90342	hgsc.bcm.edu;bcgsc.ca	37	2	97365352	97365352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FER1L5	NM_001113382	exon42	c.A4757G	p.D1586G	ACTTCGACCTATT	.	106.0	5.0	105.0	0.0	.	23
FMO1	2326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171236701	171236701	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FMO1	NM_002021	exon3	c.G152A	p.R51K	AAGGCAGAGCCAG	.	191.0	46.0	124.0	0.0	.	515
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	79204044	79204044	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRAS1	NM_001166133	exon12	c.A1178G	p.E393G	GCTACGAGCCCTC	.	97.0	6.0	131.0	0.0	.	68
FRK	2444	hgsc.bcm.edu;bcgsc.ca	37	6	116263618	116263618	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRK	NM_002031	exon8	c.A1477G	p.T493A	AGTCTGTTTCAAA	.	102.0	5.0	143.0	0.0	.	948
FRY	10129	hgsc.bcm.edu;bcgsc.ca	37	13	32698997	32698997	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	FRY	NM_023037	exon7	c.T701C	p.V234A	TTGGAGTGTTGGC	.	87.0	4.0	92.0	0.0	.	142
GJA1	2697	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	121768871	121768871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA1	NM_000165	exon2	c.G878A	p.R293K	GCGACAGAAACAA	.	50.0	6.0	85.0	0.0	.	92
GJA5	2702	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	147230516	147230516	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	GJA5	NM_005266	exon2	c.A831G	p.G277G	GAATTTTCCCCCA	.	267.0	74.0	187.0	1.0	.	91
HIST1H1E	3008	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26156843	26156843	+	Missense_Mutation	SNP	G	G	T	rs150948103	byfrequency;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HIST1H1E	NM_005321	exon1	c.G225T	p.K75N	GGAGAAGAACAAC	.	118.0	28.0	129.0	0.0	G|0.994;A|0.006	154
HKDC1	80201	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	71025391	71025391	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HKDC1	NM_025130	exon17	c.T2423C	p.L808P	TGGGCCTGGACAG	.	88.0	27.0	76.0	0.0	.	95
HMMR	3161	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	162911119	162911119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HMMR	NM_001142556	exon16	c.T1830G	p.N610K	GTTGAATGAACAT	.	133.0	9.0	127.0	0.0	.	90
HSD17B3	3293	hgsc.bcm.edu;bcgsc.ca	37	9	99006632	99006632	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	HSD17B3	NM_000197	exon9	c.A651G	p.K217K	TTTTGCTTTATAT	.	75.0	4.0	104.0	0.0	.	90
IARS	3376	hgsc.bcm.edu;bcgsc.ca	37	9	95051645	95051645	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	IARS	NM_013417	exon2	c.G57A	p.L19L	AAACTCCAAGATT	.	58.0	4.0	115.0	0.0	.	92
KAT7	11143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47874270	47874270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_007067	exon3	c.G322T	p.V108F	CAAGTGGTTGATT	.	121.0	99.0	146.0	0.0	.	.
KCNJ6	3763	hgsc.bcm.edu;bcgsc.ca	37	21	38997717	38997717	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNJ6	NM_002240	exon4	c.T1016C	p.V339A	GTCAGGACAGGTG	.	80.0	4.0	114.0	0.0	.	91
KCNMA1	3778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	78669796	78669796	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KCNMA1	NM_001161352	exon25	c.A3075G	p.E1025E	GTACAGTTCTGTA	.	39.0	4.0	61.0	0.0	.	93
KDM4D	55693	hgsc.bcm.edu;bcgsc.ca	37	11	94731384	94731384	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KDM4D	NM_018039	exon3	c.T848C	p.F283S	CTGGCTTCAACCA	.	85.0	5.0	107.0	0.0	.	226
KIAA0100	9703	hgsc.bcm.edu;bcgsc.ca	37	17	26946934	26946934	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0100	NM_014680	exon30	c.C5464T	p.R1822W	GCTGCCGCACAGC	.	82.0	4.0	69.0	0.0	.	93
KIAA0391	9692	hgsc.bcm.edu;bcgsc.ca	37	14	35593210	35593210	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIAA0391	NM_014672	exon2	c.A759G	p.G253G	CCAGGGAGCTCTC	.	68.0	4.0	95.0	0.0	.	226
KIAA1239	57495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	37447599	37447599	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001144990	exon7	c.T3989A	p.I1330N	GGGAAATCATTTA	.	129.0	6.0	127.0	0.0	.	.
KIF13A	63971	hgsc.bcm.edu;bcgsc.ca	37	6	17834225	17834225	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF13A	NM_001105567	exon12	c.A1233G	p.E411E	CTTCTCTTCCCAA	.	125.0	5.0	115.0	0.0	.	137
KIF20B	9585	hgsc.bcm.edu;bcgsc.ca	37	10	91484863	91484863	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIF20B	NM_016195	exon15	c.A1949G	p.D650G	AATGTGACACTCG	.	74.0	4.0	104.0	0.0	.	93
KIRREL2	84063	hgsc.bcm.edu;bcgsc.ca	37	19	36353409	36353409	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KIRREL2	NM_199180	exon12	c.G1525A	p.V509M	CCCACTGTGCGGA	.	74.0	4.0	50.0	0.0	.	93
KLF10	7071	hgsc.bcm.edu;bcgsc.ca	37	8	103664250	103664250	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLF10	NM_005655	exon3	c.T310C	p.S104P	CTTGAGAGGGTTC	.	87.0	4.0	80.0	0.0	.	226
KLHDC10	23008	hgsc.bcm.edu;bcgsc.ca	37	7	129762020	129762020	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHDC10	NM_014997	exon5	c.T757C	p.S253P	AACCTATCCTGTG	.	80.0	4.0	87.0	0.0	.	90
KLHL11	55175	hgsc.bcm.edu;bcgsc.ca	37	17	40010298	40010298	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLHL11	NM_018143	exon2	c.C1821T	p.Y607Y	ATCTTTGTAATAG	.	81.0	4.0	119.0	0.0	.	90
KLKB1	3818	hgsc.bcm.edu;bcgsc.ca	37	4	187175807	187175807	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KLKB1	NM_000892	exon12	c.A1379G	p.D460G	CAAAAGATACACC	.	79.0	4.0	136.0	0.0	.	227
KRI1	65095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10671691	10671691	+	Silent	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRI1	NM_023008	exon8	c.C669G	p.S223S	CTTCAGGGAATCT	.	110.0	26.0	93.0	0.0	.	69
KRIT1	889	hgsc.bcm.edu;bcgsc.ca	37	7	91851228	91851228	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	KRIT1	NM_194456	exon15	c.A1551G	p.E517E	TTCAACTTCCAAG	.	73.0	4.0	50.0	0.0	.	132
LATS1	9113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	150001056	150001058	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AGA	AGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LATS1	NM_004690	exon5	c.2546_2548del	p.849_850del	CAGTGCAGAGGCC	.	152.0	116.0	208.0	0.0	.	992
LGI4	163175	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	35622722	35622722	+	Silent	SNP	C	C	T	rs191436645		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LGI4	NM_139284	exon5	c.G429A	p.L143L	TCGGAACAGGAAT	.	147.0	77.0	190.0	1.0	C|0.999;T|0.001	91
LMNA	4000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156108485	156108485	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	LMNA	NM_170707	exon11	c.C1905T	p.G635G	GGGTGGCAGCTTC	.	242.0	50.0	191.0	0.0	.	228
MACF1	23499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	39751339	39751339	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MACF1	NM_012090	exon15	c.C1432A	p.Q478K	TACATTCAGGAGT	.	194.0	153.0	257.0	0.0	.	165
MDN1	23195	hgsc.bcm.edu;bcgsc.ca	37	6	90428856	90428856	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MDN1	NM_014611	exon41	c.A6056G	p.Q2019R	CTTACCTGAACAT	.	57.0	4.0	60.0	0.0	.	100
MLL5	55904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	104746372	104746372	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MLL5	NM_018682	exon18	c.C2518T	p.Q840X	CCCTGTCAAGAAA	.	152.0	24.0	154.0	0.0	.	93
MS4A14	84689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	60184403	60184403	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MS4A14	NM_001261828	exon6	c.G2061A	p.W687X	ATTCTGGCAATTC	.	89.0	17.0	102.0	0.0	.	90
MTRF1L	54516	hgsc.bcm.edu;bcgsc.ca	37	6	153313995	153313995	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MTRF1L	NM_019041	exon5	c.A802G	p.T268A	CACCTGTTGGAAG	.	63.0	4.0	42.0	0.0	.	90
MYH9	4627	hgsc.bcm.edu;bcgsc.ca	37	22	36696312	36696312	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYH9	NM_002473	exon24	c.2839-2A>G	.	AGCTCCTGCCGGG	.	60.0	4.0	52.0	0.0	.	292
MYOF	26509	hgsc.bcm.edu;bcgsc.ca	37	10	95109578	95109578	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	MYOF	NM_013451	exon36	c.T4070C	p.L1357P	ATGAAGAGAACAG	.	83.0	4.0	147.0	0.0	.	93
NAA16	79612	hgsc.bcm.edu;bcgsc.ca	37	13	41891035	41891035	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAA16	NM_001110798	exon2	c.T108C	p.I36I	GATGATTCTGTCG	.	81.0	4.0	86.0	0.0	.	90
NAV3	89795	hgsc.bcm.edu;bcgsc.ca	37	12	78388596	78388596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NAV3	NM_014903	exon6	c.T685C	p.Y229H	GCCAGATATGCAA	.	56.0	4.0	89.0	0.0	.	279
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35758164	35758164	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NBEA	NM_015678	exon30	c.C4883A	p.A1628D	TCCTTGCCAAGTT	.	126.0	73.0	149.0	0.0	.	144
NFX1	4799	hgsc.bcm.edu;bcgsc.ca	37	9	33351736	33351736	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NFX1	NM_147133	exon16	c.T2603C	p.M868T	CGTGTATGGCACC	.	54.0	4.0	54.0	0.0	.	91
NR5A2	2494	hgsc.bcm.edu;bcgsc.ca	37	1	199997033	199997033	+	Missense_Mutation	SNP	C	C	T	rs142187332		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	NR5A2	NM_003822	exon1	c.A58T	p.M20L	CTTACACCTATTG	.	71.0	4.0	56.0	0.0	C|1.000;T|0.000	227
OPN4	94233	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	88421086	88421086	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OPN4	NM_001030015	exon8	c.1047delC	p.I349fs	CGTCATCGCCAAG	.	94.0	34.0	112.0	0.0	.	69
OR10A7	121364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55614885	55614885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR10A7	NM_001005280	exon1	c.C77A	p.S26Y	AAGTTTCCCTCTT	.	176.0	82.0	263.0	1.0	.	72
OR2K2	26248	hgsc.bcm.edu;bcgsc.ca	37	9	114089950	114089950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR2K2	NM_205859	exon1	c.T764C	p.L255P	ATAGAGAGGGCAG	.	61.0	4.0	101.0	0.0	.	69
OR52B4	143496	hgsc.bcm.edu;bcgsc.ca	37	11	4389188	4389188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OR52B4	NM_001005161	exon1	c.A338G	p.E113G	CCTGACTCAGAGA	.	83.0	4.0	101.0	0.0	.	90
OVOL2	58495	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	18022310	18022310	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OVOL2	NM_021220	exon3	c.G379C	p.G127R	GGAAGCCCTTGCC	.	142.0	6.0	157.0	0.0	.	68
OXCT1	5019	hgsc.bcm.edu;bcgsc.ca	37	5	41794835	41794835	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	OXCT1	NM_000436	exon12	c.T1116C	p.T372T	AAGAATAGTAACT	.	66.0	4.0	46.0	0.0	.	133
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110439078	110439078	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAK3	NM_001128168	exon13	c.A1227T	p.Q409H	CCTGCAAGCTTTG	.	58.0	49.0	46.0	0.0	.	1043
PAQR5	54852	hgsc.bcm.edu;bcgsc.ca	37	15	69672244	69672244	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PAQR5	NM_001104554	exon4	c.T74C	p.L25P	GCATCCTGTTCGG	.	90.0	4.0	80.0	0.0	.	70
PCDHB14	56122	hgsc.bcm.edu;broad.mit.edu	37	5	140605206	140605206	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PCDHB14	NM_018934	exon1	c.C2129T	p.A710V	TCGTGGCGGTGCG	.	57.0	4.0	34.0	0.0	.	91
PDE10A	10846	hgsc.bcm.edu;bcgsc.ca	37	6	165863852	165863852	+	Splice_Site	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE10A	NM_001130690	exon5	c.226-2A>G	.	TGGTACTTTGGAT	.	84.0	5.0	100.0	0.0	.	519
PDE7A	5150	hgsc.bcm.edu;bcgsc.ca	37	8	66636575	66636575	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PDE7A	NM_001242318	exon11	c.A1077G	p.K359K	AGCACATTTCAAA	.	58.0	4.0	73.0	0.0	.	90
PGM3	5238	hgsc.bcm.edu;bcgsc.ca	37	6	83889643	83889643	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PGM3	NM_001199917	exon8	c.A915G	p.G305G	TGCATCTCCATCA	.	108.0	5.0	116.0	0.0	.	90
PHYH	5264	hgsc.bcm.edu;bcgsc.ca	37	10	13333891	13333891	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PHYH	NM_006214	exon5	c.T436C	p.F146L	CAGTGAAGCACTC	.	63.0	4.0	44.0	0.0	.	90
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu	37	7	47849144	47849144	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKD1L1	NM_138295	exon51	c.T7613C	p.L2538P	ACACAGAGGTGGA	.	45.0	5.0	45.0	0.0	.	145
PKN3	29941	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	9	131469012	131469012	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PKN3	NM_013355	exon4	c.T432C	p.A144A	GGCAGCTGCCCAG	.	54.0	5.0	57.0	0.0	.	521
POU4F2	5458	hgsc.bcm.edu;bcgsc.ca	37	4	147561644	147561644	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	POU4F2	NM_004575	exon2	c.T914C	p.L305P	AGTCCCTCACACT	.	51.0	4.0	76.0	0.0	.	135
PPARGC1A	10891	hgsc.bcm.edu;bcgsc.ca	37	4	23816124	23816124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPARGC1A	NM_013261	exon8	c.T982C	p.S328P	TCTTTGATGGTGG	.	79.0	4.0	100.0	0.0	.	230
PPIP5K2	23262	hgsc.bcm.edu;bcgsc.ca	37	5	102490644	102490644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPIP5K2	NM_015216	exon12	c.A1400G	p.E467G	TATTAGAGATGTG	.	55.0	4.0	68.0	0.0	.	92
PPP1R12A	4659	hgsc.bcm.edu;bcgsc.ca	37	12	80191131	80191131	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP1R12A	NM_002480	exon16	c.A2136G	p.G712G	ACTTCTTCCTATT	.	69.0	4.0	97.0	0.0	.	273
PPP2R2C	5522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6377634	6377634	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP2R2C	NM_181876	exon4	c.T359A	p.I120N	TCGGTAATCTTCC	.	190.0	92.0	208.0	0.0	.	1084
PPP3CC	5533	hgsc.bcm.edu;bcgsc.ca	37	8	22333119	22333119	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PPP3CC	NM_001243974	exon3	c.A354G	p.R118R	GGACAGAGGCTAT	.	85.0	4.0	90.0	0.0	.	227
PRKD2	25865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47207810	47207810	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PRKD2	NM_016457	exon4	c.G608C	p.S203T	TGGCCACTGGCCA	.	100.0	26.0	106.0	0.0	.	759
PSMD1	5707	hgsc.bcm.edu;bcgsc.ca	37	2	232028362	232028362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PSMD1	NM_002807	exon21	c.A2402G	p.Q801R	AAGTTCAGTATAA	.	75.0	4.0	80.0	0.0	.	92
PTCHD1	139411	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	23411906	23411906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTCHD1	NM_173495	exon3	c.A2271T	p.L757F	ATGCTTAATTTAT	.	86.0	75.0	69.0	1.0	.	135
PTPRG	5793	hgsc.bcm.edu;bcgsc.ca	37	3	62180755	62180755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRG	NM_002841	exon10	c.T1238C	p.V413A	GCCATGTCTCACC	.	80.0	6.0	131.0	0.0	.	419
PTPRK	5796	hgsc.bcm.edu;bcgsc.ca	37	6	128388889	128388889	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PTPRK	NM_001135648	exon12	c.A1932G	p.R644R	GGCTTCTCTCTTG	.	83.0	4.0	97.0	0.0	.	231
PZP	5858	hgsc.bcm.edu;bcgsc.ca	37	12	9334596	9334596	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	PZP	NM_002864	exon14	c.A1664G	p.E555G	TCAATCTCAAATT	.	123.0	6.0	132.0	0.0	.	157
QSOX1	5768	hgsc.bcm.edu;bcgsc.ca	37	1	180163522	180163522	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	QSOX1	NM_002826	exon11	c.T1463C	p.L488P	CTCGCCTTGCAGG	.	98.0	5.0	130.0	0.0	.	91
R3HCC1L	27291	hgsc.bcm.edu;bcgsc.ca	37	10	99991351	99991351	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001256619	exon7	c.T1910C	p.L637P	TTGACCTCAGTGA	.	75.0	5.0	123.0	0.0	.	.
RAD21	5885	hgsc.bcm.edu;bcgsc.ca	37	8	117870690	117870690	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RAD21	NM_006265	exon5	c.G382T	p.D128Y	CCACATCGATGTC	.	82.0	4.0	56.0	0.0	.	227
RANBP9	10048	ucsc.edu;bcgsc.ca	37	6	13642747	13642747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RANBP9	NM_005493	exon7	c.G1189A	p.V397I	CTAGAACGGTCTG	.	43.0	4.0	30.0	0.0	.	414
RBL2	5934	hgsc.bcm.edu;bcgsc.ca	37	16	53513864	53513864	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RBL2	NM_005611	exon19	c.A2842G	p.S948G	AGCAGAAGCCATC	.	98.0	4.0	141.0	0.0	.	841
RC3H2	54542	hgsc.bcm.edu;bcgsc.ca	37	9	125613389	125613389	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RC3H2	NM_001100588	exon20	c.A3351G	p.K1117K	ACTCTGTTTCTTC	.	77.0	5.0	147.0	0.0	.	523
RGS6	9628	hgsc.bcm.edu;bcgsc.ca	37	14	72945005	72945005	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RGS6	NM_001204424	exon12	c.A822G	p.R274R	CGACAGACATTGT	.	61.0	4.0	95.0	0.0	.	227
RICTOR	253260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	38958582	38958582	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RICTOR	NM_152756	exon24	c.T2383A	p.S795T	GGTGGGATAACGC	.	217.0	93.0	220.0	0.0	.	849
RNF17	56163	hgsc.bcm.edu;bcgsc.ca	37	13	25399863	25399863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RNF17	NM_001184993	exon16	c.G2198A	p.C733Y	AAGCCTGTGTAGC	.	45.0	4.0	87.0	0.0	.	228
ROR1	4919	hgsc.bcm.edu;bcgsc.ca	37	1	64605903	64605903	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ROR1	NM_001083592	exon6	c.T722C	p.V241A	CATCCGTCCCAAA	.	116.0	5.0	162.0	0.0	.	1536
RP1	6101	hgsc.bcm.edu;bcgsc.ca	37	8	55542178	55542178	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RP1	NM_006269	exon4	c.T5736C	p.A1912A	GTATGCTCTTTGT	.	58.0	4.0	77.0	0.0	.	102
RPS6KA6	27330	hgsc.bcm.edu;bcgsc.ca	37	X	83389804	83389804	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	RPS6KA6	NM_014496	exon8	c.A632G	p.H211R	TTGATATGTCCTA	.	52.0	4.0	58.0	0.0	.	615
SDAD1	55153	hgsc.bcm.edu;bcgsc.ca	37	4	76882410	76882410	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SDAD1	NM_018115	exon15	c.A1233G	p.E411E	AAGTTCTTCAGTC	.	87.0	4.0	142.0	0.0	.	91
SEPN1	57190	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26139198	26139198	+	Silent	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SEPN1	.	.	.	.	GTTCACTGAGGCC	.	94.0	67.0	126.0	0.0	.	92
SETDB1	9869	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	1	150933423	150933423	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SETDB1	NM_012432	exon16	c.C2885G	p.S962X	CTCCCTCAATCCC	.	203.0	14.0	139.0	0.0	.	228
SF1	7536	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	64534515	64534515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SF1	NM_001178030	exon12	c.C1814T	p.P605L	GGCGGCGGCGGCA	.	74.0	14.0	61.0	0.0	.	227
SFMBT1	51460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52962211	52962211	+	Silent	SNP	A	A	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SFMBT1	NM_016329	exon9	c.T1044G	p.P348P	ACCTGGAGGGGGG	.	28.0	12.0	48.0	0.0	.	91
SGCD	6444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	155935693	155935693	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_000337	exon4	c.A275T	p.K92I	ACGCCAAAGAAAT	.	63.0	32.0	70.0	0.0	.	.
SGSM1	129049	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	22	25263061	25263061	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SGSM1	NM_001098497	exon10	c.G928A	p.V310I	TCCAGCGTCTACT	.	116.0	8.0	86.0	0.0	.	27
SHISA5	51246	hgsc.bcm.edu;bcgsc.ca	37	3	48510952	48510952	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHISA5	NM_016479	exon5	c.T451C	p.S151P	TGGTGGATGTGGT	.	91.0	5.0	114.0	0.0	.	68
SHPRH	257218	hgsc.bcm.edu;bcgsc.ca	37	6	146243946	146243946	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHPRH	NM_173082	exon19	c.T3584C	p.F1195S	AGTAAGAACTGAA	.	78.0	4.0	91.0	0.0	.	92
SHROOM4	57477	hgsc.bcm.edu;bcgsc.ca	37	X	50351123	50351123	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SHROOM4	NM_020717	exon6	c.A3019G	p.N1007D	CTGGGTTCTCAAG	.	99.0	5.0	102.0	0.0	.	131
SIPA1L1	26037	ucsc.edu;bcgsc.ca	37	14	72205030	72205030	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SIPA1L1	NM_015556	exon21	c.A5259G	p.E1753E	TCGGGAAGATTTG	.	24.0	4.0	28.0	0.0	.	156
SKIDA1	387640	hgsc.bcm.edu;bcgsc.ca	37	10	21806681	21806681	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_207371	exon4	c.A71G	p.K24R	ATTTGCTTCCCTT	.	148.0	6.0	90.0	0.0	.	.
SLC24A4	123041	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	92790275	92790275	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC24A4	NM_153646	exon1	c.G101A	p.C34Y	TGGTGTGCTGTGC	.	90.0	15.0	79.0	0.0	.	93
SLC2A7	155184	hgsc.bcm.edu;ucsc.edu	37	1	9074919	9074919	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC2A7	NM_207420	exon7	c.A724G	p.R242G	TCAGCCTCCTCAG	.	37.0	4.0	17.0	0.0	.	514
SLC46A2	57864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	115652239	115652239	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLC46A2	NM_033051	exon1	c.C723T	p.P241P	CACGGCGGGGAGC	.	70.0	51.0	92.0	0.0	.	90
SLCO1A2	6579	hgsc.bcm.edu;bcgsc.ca	37	12	21453353	21453353	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1A2	NM_134431	exon9	c.A839G	p.D280G	ATGATGTCAGCAT	.	44.0	4.0	64.0	0.0	.	157
SLCO1B1	10599	hgsc.bcm.edu;bcgsc.ca	37	12	21392086	21392086	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO1B1	NM_006446	exon15	c.T2039C	p.V680A	ATTTTGTCCCTTC	.	70.0	4.0	67.0	0.0	.	97
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	101755554	101755554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SLCO6A1	NM_173488	exon8	c.C1448T	p.A483V	ATCCCAGCAAATT	.	195.0	13.0	243.0	0.0	.	96
SMARCA2	6595	hgsc.bcm.edu;bcgsc.ca	37	9	2029231	2029231	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SMARCA2	NM_139045	exon2	c.T209C	p.M70T	AAGGCATGCATCA	.	73.0	4.0	103.0	0.0	.	653
SPINT3	10816	hgsc.bcm.edu;bcgsc.ca	37	20	44144183	44144183	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_006652	exon1	c.A66G	p.E22E	TGCTAGTTCTGAT	.	107.0	5.0	100.0	0.0	.	.
SPIRE1	56907	hgsc.bcm.edu;bcgsc.ca	37	18	12453092	12453092	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPIRE1	NM_001128626	exon14	c.T1822C	p.S608P	TATAAGACCAAGT	.	59.0	4.0	111.0	0.0	.	90
SPTA1	6708	hgsc.bcm.edu;bcgsc.ca	37	1	158646052	158646052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTA1	NM_003126	exon8	c.A991G	p.T331A	AAAGTGTCAGCTT	.	148.0	6.0	128.0	0.0	.	142
SPTBN2	6712	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66472881	66472881	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SPTBN2	NM_006946	exon14	c.C1866G	p.S622R	CTCATAGCTCTGC	.	118.0	73.0	96.0	0.0	.	155
STXBP5L	9515	hgsc.bcm.edu;bcgsc.ca	37	3	120941989	120941989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	STXBP5L	NM_014980	exon11	c.A1096G	p.T366A	TGTGAAACGCCCT	.	60.0	4.0	72.0	0.0	.	77
SYNE2	23224	hgsc.bcm.edu;bcgsc.ca	37	14	64519805	64519805	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYNE2	NM_182914	exon48	c.T9174C	p.I3058I	AGCTATTGATTTG	.	84.0	4.0	146.0	0.0	.	164
SYTL5	94122	hgsc.bcm.edu;bcgsc.ca	37	X	37913595	37913595	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SYTL5	NM_001163334	exon2	c.T249C	p.A83A	TCAGGCTTGCTCA	.	67.0	4.0	45.0	0.0	.	131
SZT2	23334	hgsc.bcm.edu;bcgsc.ca	37	1	43890875	43890875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	SZT2	NM_015284	exon18	c.A2642G	p.D881G	CCAAAGACAGGTG	.	77.0	5.0	125.0	0.0	.	144
TAF2	6873	hgsc.bcm.edu;bcgsc.ca	37	8	120810035	120810035	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TAF2	NM_003184	exon7	c.T844C	p.S282P	GGTATGATGTGGT	.	95.0	4.0	91.0	0.0	.	274
TMBIM4	51643	hgsc.bcm.edu;bcgsc.ca	37	12	66531841	66531841	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMBIM4	NM_016056	exon7	c.T616C	p.S206P	CAGGTGACAGTTT	.	81.0	4.0	114.0	0.0	.	515
TMEM132A	54972	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60701185	60701185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM132A	NM_017870	exon8	c.C1531T	p.R511C	CAGGTCCGCGGCT	.	69.0	38.0	64.0	0.0	.	227
TMEM209	84928	hgsc.bcm.edu;bcgsc.ca	37	7	129818251	129818251	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TMEM209	NM_032842	exon10	c.A1237G	p.R413G	TGATCCTTTCAAA	.	54.0	4.0	60.0	0.0	.	92
TNN	63923	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	175067580	175067580	+	Silent	SNP	T	T	G	rs61747978	byfrequency;alternate_allele	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TNN	NM_022093	exon9	c.T1968G	p.S656S	CACCTCTGCTGGT	.	656.0	57.0	277.0	0.0	T|0.981;C|0.019	138
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7577534	7577534	+	Missense_Mutation	SNP	C	C	A	rs28934571	bycluster	TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	TP53,mouth,carcinoma,0	TP53	NM_000546	exon7	c.G747T	p.R249S	GATGGGCCTCCGG	.	123.0	91.0	191.0	0.0	C|1.000;|0.000	70225
TPR	7175	hgsc.bcm.edu;bcgsc.ca	37	1	186340129	186340129	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TPR	NM_003292	exon3	c.T303C	p.I101I	CTGAGCAATTTCA	.	84.0	4.0	102.0	0.0	.	228
TRAK1	22906	broad.mit.edu;bcgsc.ca	37	3	42234621	42234660	+	Frame_Shift_Del	DEL	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	-	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	AAGATGCTGCCCGCCAGCAAGAGGAGATCACACACCTGCT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TRAK1	NM_001265608	exon8	c.824_863del	p.275_288del	AGACGGAAGATGC	.	84.0	4.0	164.0	0.0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179648880	179648880	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TTN	NM_001267550	exon16	c.G2692A	p.V898M	TTTTCACCTCAAC	.	259.0	12.0	256.0	0.0	.	636
TYW3	127253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75199081	75199081	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	TYW3	NM_001162916	exon1	c.C153T	p.G51G	CGCTGGCCGCATC	.	43.0	5.0	62.0	0.0	.	70
UBOX5	22888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	3102976	3102976	+	Silent	SNP	G	G	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UBOX5	NM_014948	exon3	c.C309T	p.G103G	AGCTGGGCCCAGG	.	102.0	47.0	114.0	0.0	.	227
UCP1	7350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	141484605	141484605	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UCP1	NM_021833	exon3	c.G393A	p.G131G	GGGTTGCCCAATG	.	72.0	32.0	110.0	0.0	.	91
UNC5D	137970	broad.mit.edu;bcgsc.ca	37	8	35647893	35647893	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC5D	NM_080872	exon17	c.G2674T	p.A892S	TATTTCGCTACAC	.	78.0	31.0	77.0	1.0	.	96
UNC80	285175	hgsc.bcm.edu;bcgsc.ca	37	2	210761117	210761117	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UNC80	NM_032504	exon27	c.A4363G	p.R1455G	TACCACAGAAACA	.	93.0	5.0	98.0	0.0	.	90
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126229602	126229602	+	Silent	SNP	C	C	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	UROC1	NM_001165974	exon2	c.G162A	p.P54P	GACATCCGGGGGG	.	45.0	9.0	39.0	0.0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373462	216373462	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USH2A	NM_007123	exon17	c.T3318C	p.S1106S	TTGAATACCTGAA	.	17.0	10.0	41.0	0.0	.	115
USP34	9736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	61571021	61571021	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	USP34	NM_014709	exon16	c.C2429A	p.A810E	AGTTCCGCATGTG	.	173.0	112.0	196.0	0.0	.	579
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	108292166	108292166	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VAV3	NM_006113	exon14	c.A1310T	p.D437V	TAGTTATCACCTT	.	57.0	4.0	108.0	0.0	.	1339
VEZT	55591	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	12	95650962	95650962	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VEZT	NM_017599	exon3	c.A205G	p.S69G	ATCAAAAGTTGGA	.	42.0	4.0	75.0	0.0	.	23
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	12403094	12403094	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS13D	NM_015378	exon42	c.A8871G	p.G2957G	AAGAGGAAAGTTA	.	62.0	4.0	61.0	0.0	.	95
VPS35	55737	hgsc.bcm.edu;bcgsc.ca	37	16	46708512	46708512	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	VPS35	NM_018206	exon9	c.T975C	p.F325F	TATATCAAAAAGT	.	77.0	4.0	100.0	0.0	.	90
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	38383676	38383676	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_031951	exon4	c.G2550C	p.M850I	AAGTCTCATTTCT	.	124.0	7.0	123.0	0.0	.	.
WNT9B	7484	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	44953863	44953863	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	WNT9B	NM_003396	exon4	c.G853T	p.E285X	TACATGGAGGACT	.	137.0	76.0	144.0	0.0	.	522
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39226588	39226588	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	XIRP1	NM_194293	exon2	c.T4349C	p.M1450T	CCTTCCATGGGCT	.	49.0	14.0	64.0	0.0	.	158
ZBTB1	22890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64989571	64989571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZBTB1	NM_014950	exon2	c.G1349T	p.C450F	GTGCATGTGGTAA	.	62.0	44.0	88.0	0.0	.	91
ZFP1	162239	broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	75204019	75204019	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFP1	NM_153688	exon4	c.A1011G	p.S337S	GAACTCACAGCTC	.	16.0	4.0	34.0	0.0	.	92
ZFYVE26	23503	hgsc.bcm.edu;bcgsc.ca	37	14	68248209	68248209	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZFYVE26	NM_015346	exon22	c.T4410C	p.D1470D	AGATGCATCCTTC	.	49.0	4.0	68.0	0.0	.	162
ZNF17	7565	hgsc.bcm.edu;bcgsc.ca	37	19	57932584	57932584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF17	NM_006959	exon3	c.T1724C	p.V575A	AAAAAGTTCACAC	.	79.0	4.0	100.0	0.0	.	90
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22155053	22155053	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF208	NM_007153	exon4	c.G2783T	p.W928L	GACAACCAGCTGA	.	68.0	13.0	101.0	0.0	.	7
ZNF345	25850	hgsc.bcm.edu;bcgsc.ca	37	19	37368330	37368330	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF345	NM_001242476	exon4	c.A598G	p.K200E	GGTGAGAAACCTT	.	76.0	4.0	61.0	0.0	.	91
ZNF549	256051	hgsc.bcm.edu;bcgsc.ca	37	19	58048846	58048846	+	Silent	SNP	A	A	G	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF549	NM_001199295	exon4	c.A474G	p.K158K	AGAGAAACACATC	.	100.0	5.0	117.0	0.0	.	91
ZNF749	388567	broad.mit.edu;bcgsc.ca	37	19	57954874	57954874	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	NM_001023561	exon3	c.C358A	p.L120M	CATGACCTGCACC	.	145.0	8.0	144.0	1.0	.	.
ZNF860	344787	hgsc.bcm.edu;bcgsc.ca	37	3	32030646	32030646	+	Silent	SNP	T	T	C	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	ZNF860	NM_001137674	exon2	c.T75C	p.T25T	CTTGACTTTTAGG	.	72.0	4.0	135.0	0.0	.	1
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	8198174	8198175	+	Missense_Mutation	DNP	TG	TG	CT	novel		TCGA-CC-A3MB-01A-11D-A20W-10	TCGA-CC-A3MB-10A-01D-A20W-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	b81ffdd9-b1d2-409e-abbb-27eb123acb69	73e746f4-36ea-4aec-8af3-a825b5917e67	.	.	.	.	.	p.HM229QV	CTAGCATGTGAGA	.	108.0	46.0	134.0	0.0	.	.
