Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ATG16L1	55054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234171807	234171807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ATG16L1	NM_017974	exon3	c.C241G	p.Q81E	GACAATCAGCTAC	.	59.0	17.0	94.0	0.0	.	90
C1orf94	84970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34667861	34667861	+	Splice_Site	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C1orf94	NM_032884	exon4	c.876+1G>T	.	TATCAGGTCAGTG	.	77.0	27.0	103.0	0.0	.	90
C2orf44	80304	broad.mit.edu;bcgsc.ca	37	2	24262242	24262242	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C2orf44	NM_025203	exon2	c.T123C	p.L41L	ACTGTGAAGCCGC	.	108.0	6.0	123.0	0.0	.	154
C8orf86	389649	broad.mit.edu;bcgsc.ca	37	8	38370074	38370074	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	C8orf86	NM_207412	exon3	c.T503C	p.L168P	AAGCAGAGAGGAC	.	89.0	5.0	82.0	0.0	.	90
CA3	761	broad.mit.edu;bcgsc.ca	37	8	86360370	86360370	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CA3	NM_005181	exon7	c.T771C	p.A257A	GAGAGCTTCCTTC	.	77.0	5.0	72.0	0.0	.	514
CMYA5	202333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	79035108	79035108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CMYA5	NM_153610	exon2	c.C10520A	p.S3507Y	AAAAGTCCCAGAT	.	96.0	38.0	51.0	0.0	.	77
CORO1C	23603	ucsc.edu;bcgsc.ca	37	12	109055931	109055931	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CORO1C	NM_014325	exon4	c.C322C	p.P108P	TCTGCCATACCTG	.	45.0	4.0	35.0	0.0	.	228
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2876120	2876120	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CSMD1	NM_033225	exon52	c.G7908A	p.T2636T	TGTCAACGTTCCA	.	71.0	25.0	76.0	0.0	.	86
CTDNEP1	23399	ucsc.edu;bcgsc.ca	37	17	7150596	7150596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CTDNEP1	NM_001143775	exon2	c.G169A	p.A57T	ACTTACCTAGCCG	.	70.0	6.0	97.0	0.0	.	91
CTNNB1	1499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	41268766	41268766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	CTNNB1,NS,Wilms_tumour,0	CTNNB1	NM_001098209	exon7	c.A1004T	p.K335I	ACGAAAAACTACT	.	76.0	33.0	113.0	0.0	.	24361
CUX2	23316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111746258	111746258	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	CUX2	NM_015267	exon14	c.C1186A	p.L396I	TCACTGCTTATTG	.	88.0	41.0	103.0	0.0	.	140
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21657266	21657266	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DNAH11	.	.	.	.	AGTCCGCGTCTGG	.	49.0	17.0	73.0	0.0	.	146
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	58001190	58001190	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	DTX3	NM_178502	exon5	c.C544T	p.H182Y	TGCCGGCATTCAT	.	85.0	35.0	89.0	0.0	.	1083
EIF2B5	8893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	183855595	183855595	+	Splice_Site	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EIF2B5	NM_003907	exon3	c.506+2T>A	.	CACAGGTCAGGAT	.	119.0	47.0	108.0	0.0	.	95
ELOVL7	79993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	60083199	60083199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ELOVL7	NM_001104558	exon2	c.G26T	p.R9M	ACAGTCCTCGATG	.	54.0	28.0	73.0	0.0	.	90
EPHA6	285220	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	96706703	96706703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EPHA6	NM_001080448	exon3	c.G980A	p.R327Q	AAGTACGGGGTTC	.	120.0	47.0	138.0	2.0	.	1561
EPHX3	79852	broad.mit.edu;bcgsc.ca	37	19	15338688	15338688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	EPHX3	NM_001142886	exon7	c.A751G	p.T251A	TGCCTGTCTTGCG	.	86.0	4.0	78.0	0.0	.	90
FBXW8	26259	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117465265	117465265	+	Silent	SNP	G	G	A	rs188048498		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	FBXW8	NM_153348	exon10	c.G1608A	p.T536T	CCAGACGGTAATG	.	37.0	18.0	30.0	0.0	G|0.999;A|0.001	229
GGN	199720	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	38877740	38877740	+	Silent	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GGN	NM_152657	exon3	c.C162T	p.S54S	TGTGGCGCTGCCA	.	20.0	4.0	25.0	0.0	.	90
GPAM	57678	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	113913361	113913364	+	Frame_Shift_Del	DEL	GAGG	GAGG	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	GAGG	GAGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GPAM	NM_020918	exon22	c.2431_2434del	p.811_812del	TGCATTGAGGTAG	.	59.0	21.0	68.0	0.0	.	92
GUSB	2990	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	65435332	65435332	+	Silent	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	GUSB	NM_000181	exon9	c.A1413G	p.K471K	CAAGGATTTGGTG	.	34.0	13.0	31.0	0.0	.	90
H2AFY2	55506	hgsc.bcm.edu;bcgsc.ca	37	10	71835423	71835423	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	H2AFY2	NM_018649	exon2	c.9delC	p.G3fs	GTCGGGCCGGAGT	.	90.0	22.0	119.0	0.0	.	91
HPS1	3257	ucsc.edu;bcgsc.ca	37	10	100183612	100183612	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	HPS1	NM_000195	exon15	c.A1430G	p.Q477R	CAGAGCTGCCGCT	.	40.0	4.0	63.0	0.0	.	91
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182350624	182350624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGA4	NM_000885	exon10	c.C1058T	p.A353V	TGAATGCAATGGA	.	127.0	46.0	129.0	0.0	.	230
ITGB8	3696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20418810	20418810	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ITGB8	NM_002214	exon4	c.A525T	p.R175S	ATCTAGAAAAATG	.	104.0	47.0	113.0	0.0	.	227
KIAA1211L	343990	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99454679	99454679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_207362	exon3	c.T142C	p.S48P	CTGTGGACGACGG	.	123.0	59.0	96.0	1.0	.	.
KIAA1468	57614	hgsc.bcm.edu;bcgsc.ca	37	18	59947916	59947948	+	In_Frame_Del	DEL	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	-	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	ATTATGGAAACAGTAATTCAAAGAGAGGTAGGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIAA1468	NM_020854	exon24	c.3088_3114del	p.1030_1038del	GGCACTATTATGG	.	72.0	19.0	87.0	0.0	.	158
KIFAP3	22920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	170007568	170007568	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIFAP3	NM_014970	exon5	c.A380T	p.D127V	ACTTCATCAATCT	.	150.0	46.0	135.0	0.0	.	91
KIFC1	3833	broad.mit.edu;bcgsc.ca	37	6	33372736	33372736	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	KIFC1	NM_002263	exon7	c.A864G	p.E288E	GGAAGAACGTCTT	.	131.0	6.0	98.0	0.0	.	90
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	25398281	25398281	+	Missense_Mutation	SNP	C	C	T	rs112445441	bycluster	TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	KRAS,NS,carcinoma,-1	KRAS	NM_004985	exon2	c.G38A	p.G13D	CCTACGCCACCAG	.	138.0	65.0	190.0	0.0	.	92875
MIPEP	4285	ucsc.edu;bcgsc.ca	37	13	24330758	24330758	+	Splice_Site	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MIPEP	NM_005932	exon19	c.1971-1G>A	.	GCAGCCCTGGGGA	.	44.0	4.0	42.0	0.0	.	90
MITF	4286	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	70014270	70014270	+	Silent	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	MITF	NM_198159	exon10	c.C1434A	p.I478I	AGACATCCTGATG	.	83.0	33.0	78.0	1.0	.	524
PALD1	27143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	72301249	72301249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	.	NM_014431	exon17	c.G2080A	p.V694M	GAGCTCGTGAGTG	.	65.0	20.0	50.0	0.0	.	.
PGBD2	267002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	249211640	249211640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PGBD2	NM_170725	exon3	c.G857T	p.R286M	TGCACAGGGGGAA	.	122.0	60.0	119.0	0.0	.	91
PHF8	23133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54044138	54044138	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHF8	NM_001184896	exon5	c.T518G	p.L173R	GAGGGCAGCGTCA	.	57.0	42.0	63.0	0.0	.	133
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47630379	47630379	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PHKB	NM_000293	exon13	c.T1300A	p.C434S	AGCAACTGTGGCC	.	167.0	43.0	175.0	0.0	.	154
PSIP1	11168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15506558	15506558	+	Splice_Site	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PSIP1	NM_001128217	exon4	c.149+1G>T	.	GACTTACGTCTCA	.	58.0	14.0	47.0	0.0	.	658
PXDNL	137902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	52384855	52384855	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	PXDNL	NM_144651	exon8	c.G704A	p.R235Q	GTAATTCGGGGGC	.	80.0	30.0	72.0	0.0	.	70
RGL1	23179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	183885770	183885770	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RGL1	NM_015149	exon17	c.G2044T	p.E682X	CAGAATGAAGACA	.	75.0	30.0	99.0	0.0	.	725
RGS22	26166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101054142	101054142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	RGS22	NM_015668	exon12	c.C1826T	p.S609L	TACTTTGACCTAA	.	73.0	26.0	80.0	0.0	.	140
SP6	80320	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	45925436	45925436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	SP6	NM_001258248	exon2	c.G360T	p.W120C	GTCCCACCACGAG	.	20.0	8.0	37.0	0.0	.	91
ST8SIA2	8128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	92988127	92988127	+	Silent	SNP	C	C	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ST8SIA2	NM_006011	exon5	c.C810T	p.Y270Y	TGCATACCCCTCG	.	41.0	19.0	43.0	0.0	.	90
TCF20	6942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	42608580	42608580	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TCF20	NM_181492	exon1	c.C2732G	p.P911R	CCACCAGGAAGAA	.	160.0	62.0	143.0	0.0	.	95
TJP1	7082	broad.mit.edu;bcgsc.ca	37	15	30025368	30025368	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TJP1	NM_175610	exon13	c.T1666C	p.S556P	GCCAAGAGCCCAG	.	121.0	5.0	114.0	0.0	.	95
TMEM132E	124842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32959873	32959873	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	TMEM132E	NM_207313	exon7	c.G1363C	p.D455H	CTCTCAGATGCCC	.	64.0	14.0	43.0	0.0	.	68
UXT	8409	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47516683	47516683	+	Silent	SNP	A	A	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	UXT	NM_153477	exon4	c.T291C	p.D97D	TGAAGTATCTGGG	.	53.0	40.0	63.0	1.0	.	130
ZNF415	55786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53612315	53612315	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF415	NM_018355	exon4	c.A983T	p.Y328F	CATGTGTAAGGTT	.	54.0	19.0	79.0	0.0	.	91
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	149557719	149557719	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF862	NM_001099220	exon7	c.C1470A	p.C490X	AGCCTGCATAGAA	.	78.0	22.0	76.0	0.0	.	69
ZNF862	643641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	149557718	149557718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZNF862	NM_001099220	exon7	c.G1469T	p.C490F	CAGCCTGCATAGA	.	79.0	22.0	75.0	0.0	.	69
ZSCAN29	146050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43656356	43656356	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A3A4-01A-11D-A22F-10	TCGA-DD-A3A4-11A-11D-A22F-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	f5d3f616-5fb1-47a0-9c01-f2fb90568df4	1a2c1ffc-b1b7-48a0-a94a-ecd67bdfe211	.	ZSCAN29	NM_152455	exon4	c.A1447C	p.T483P	GACAGGTCTCTGG	.	78.0	28.0	63.0	0.0	.	91
