Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
ADAM19	8728	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	156918883	156918885	+	In_Frame_Del	DEL	AAG	AAG	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AAG	AAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ADAM19	NM_033274	exon17	c.1944_1946del	p.648_649del	GTTTCAAAGAAGG	.	158.0	44.0	209.0	0.0	.	294
AKAP8	10270	broad.mit.edu;mdanderson.org	37	19	15484748	15484748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	AKAP8	NM_005858	exon4	c.G220T	p.A74S	GCATGGCAGGGGC	.	32.0	9.0	26.0	0.0	.	290
AKT2	208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40742001	40742001	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	AKT2	NM_001626	exon11	c.A971G	p.D324G	TCATTGTCCTCCA	.	86.0	24.0	64.0	0.0	.	978
ANAPC5	51433	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	121783834	121783834	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANAPC5	NM_016237	exon4	c.398delG	p.G133fs	AACAAACCTACAA	.	92.0	19.0	125.0	0.0	.	290
ANGPTL1	9068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	178822882	178822882	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANGPTL1	NM_004673	exon4	c.T864C	p.H288H	GACCGAATGCCCA	.	112.0	19.0	113.0	0.0	.	90
ANO8	57719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17443815	17443815	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ANO8	NM_020959	exon5	c.C510T	p.R170R	CCAGAAGCGGATG	.	85.0	29.0	98.0	0.0	.	93
APOB	338	hgsc.bcm.edu;bcgsc.ca	37	2	21229380	21229381	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	APOB,back,malignant_melanoma,+2	APOB	NM_000384	exon26	c.10360_10361insT	p.V3454fs	AAGAGACAGTAGG	.	181.0	58.0	196.0	0.0	.	175
C11orf63	79864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	122774639	122774639	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C11orf63	NM_024806	exon3	c.A351G	p.Q117Q	GCAACAACCAATA	.	66.0	24.0	86.0	0.0	.	93
C1RL	51279	ucsc.edu;bcgsc.ca	37	12	7249174	7249174	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C1RL	NM_016546	exon6	c.C1277T	p.T426M	CTTTGCGTCTCAT	.	206.0	73.0	262.0	2.0	.	91
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6693481	6693481	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C3	NM_000064	exon25	c.G3172T	p.A1058S	TGAAGGCCAGCTG	.	32.0	9.0	39.0	0.0	.	95
C7orf43	55262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99754066	99754066	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	C7orf43	NM_018275	exon8	c.A1183T	p.N395Y	GGAGATTGTTAAG	.	313.0	86.0	225.0	1.0	.	90
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181767517	181767517	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	CACNA1E,NS,carcinoma,0	CACNA1E	NM_001205293	exon48	c.G6489A	p.P2163P	CGTCCCGCCAAAG	.	111.0	34.0	89.0	1.0	.	95
CACNA2D4	93589	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1953666	1953666	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CACNA2D4	NM_172364	exon25	c.G2372A	p.S791N	AACACGCTGGCCT	.	210.0	75.0	145.0	1.0	.	23
CANX	821	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	179150758	179150758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CANX	NM_001746	exon12	c.T1496A	p.I499N	TGGTTATCCTCTT	.	103.0	34.0	149.0	1.0	.	90
CCDC30	728621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43076659	43076659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CCDC30	NM_001080850	exon10	c.G1394A	p.S465N	TCAAAAGCAACCA	.	35.0	9.0	62.0	0.0	.	90
CD1B	910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158301185	158301185	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CD1B	NM_001764	exon1	c.C29A	p.A10D	AGAACAGCTAACA	.	292.0	62.0	271.0	0.0	.	92
CDNF	441549	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14862095	14862095	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDNF	NM_001029954	exon4	c.A448G	p.I150V	GCAGGATCTGCTT	.	155.0	39.0	93.0	1.0	.	90
CDYL	9425	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	4935914	4935914	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CDYL	NM_004824	exon3	c.G857C	p.R286T	CCTACAGATACAG	.	251.0	167.0	170.0	1.0	.	90
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104066455	104066455	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CENPE	NM_001813	exon32	c.A4609G	p.I1537V	GTTTTATATTAAA	.	49.0	14.0	52.0	0.0	.	277
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88479875	88479875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CEP290	NM_025114	exon34	c.A4378C	p.I1460L	CCTTAATTTTCCT	.	48.0	16.0	47.0	0.0	.	96
CPSF3L	54973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	1257366	1257366	+	Splice_Site	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CPSF3L	.	.	.	.	GCTGCCTGCCACA	.	151.0	81.0	272.0	0.0	.	90
CTNND2	1501	broad.mit.edu;ucsc.edu	37	5	11117631	11117631	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CTNND2	NM_001332	exon13	c.T2208A	p.C736X	CCCATCACACTCT	.	228.0	72.0	236.0	1.0	.	293
CYP27A1	1593	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219674376	219674376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	CYP27A1	NM_000784	exon2	c.C332T	p.A111V	CCAGTGCCCCGCT	.	205.0	73.0	211.0	0.0	.	91
DARC	2532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159175737	159175737	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DARC	NM_001122951	exon1	c.A514T	p.T172S	GGGCTCACTGTGG	.	104.0	23.0	92.0	0.0	.	659
DCLRE1C	64421	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14951131	14951131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DCLRE1C	NM_001033855	exon14	c.G1355T	p.C452F	TCTTCACAATCTA	.	107.0	31.0	99.0	0.0	.	228
DDX11	1663	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	31249813	31249813	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DDX11	NM_030653	exon17	c.G1651A	p.E551K	GCAGACGAGAGTC	.	183.0	67.0	164.0	0.0	.	229
DEGS1	8560	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	224377758	224377758	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DEGS1	NM_003676	exon2	c.A562T	p.I188F	GAAGTTATCAATA	.	89.0	22.0	76.0	1.0	.	90
DKK3	27122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	11987381	11987381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DKK3	NM_015881	exon7	c.A805T	p.S269C	GGCCACTGGCACA	.	62.0	19.0	58.0	0.0	.	721
DNHD1	144132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6567458	6567458	+	Silent	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	DNHD1	NM_144666	exon21	c.T5289C	p.Y1763Y	CTTGTATGCCCCA	.	116.0	31.0	104.0	0.0	.	24
EHHADH	1962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184947229	184947229	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EHHADH	NM_001966	exon4	c.A454G	p.I152V	AGGTAATTAAGTC	.	106.0	40.0	120.0	0.0	.	93
EPS8L1	54869	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55598913	55598913	+	Silent	SNP	A	A	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	EPS8L1	NM_133180	exon20	c.A2103T	p.S701S	AGTGTCAGAGCTG	.	214.0	67.0	226.0	0.0	.	115
FAM120A	23196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	96233651	96233652	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FAM120A	NM_014612	exon2	c.703_704insT	p.I235fs	TTTCCTATTTTTG	.	161.0	31.0	184.0	0.0	.	90
FLT3	2322	broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28626760	28626760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FLT3	NM_004119	exon5	c.A536G	p.Q179R	GCGTCCTGGTTTT	.	73.0	36.0	140.0	1.0	.	42117
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32850640	32850640	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	FRY	NM_023037	exon57	c.G8326A	p.V2776M	TTCAGTGTGTTAG	.	82.0	35.0	161.0	0.0	.	142
GAD2	2572	hgsc.bcm.edu;bcgsc.ca	37	10	26505807	26505807	+	Silent	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GAD2	NM_000818	exon1	c.C69T	p.P23P	GAATCCCGGCACA	.	59.0	4.0	52.0	0.0	.	515
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	30819694	30819694	+	Nonsense_Mutation	SNP	C	C	A	rs145224145	alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GADL1	NM_207359	exon14	c.G1369T	p.E457X	AGAACTCGGGTCC	.	230.0	78.0	298.0	1.0	C|0.999;T|0.000	90
GOLGB1	2804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	121416717	121416717	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	GOLGB1	NM_001256486	exon13	c.C2653T	p.Q885X	AGAGCTGATCCAT	.	96.0	29.0	137.0	0.0	.	161
HIPK3	10114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33308240	33308240	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	HIPK3	NM_001048200	exon2	c.G280A	p.V94I	ACAAAGGTCATAG	.	100.0	31.0	105.0	0.0	.	336
KCNMB3	27094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	178984440	178984440	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KCNMB3	NM_171828	exon1	c.G59A	p.G20E	TACCTCCCCTGGC	.	69.0	29.0	87.0	0.0	.	90
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	117019926	117019927	+	Frame_Shift_Del	DEL	AA	AA	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	AA	AA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KPNA5	NM_002269	exon5	c.400_401del	p.134_134del	TTTGTGAAATTTC	.	49.0	23.0	109.0	0.0	.	290
KRT38	8687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39596873	39596873	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	KRT38	NM_006771	exon1	c.A301G	p.N101D	GGCCATTCAGGGT	.	153.0	70.0	170.0	0.0	.	92
LHCGR	3973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	48958372	48958372	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LHCGR	NM_000233	exon2	c.T227G	p.I76R	ATTTTTATGACCT	.	29.0	11.0	31.0	0.0	.	589
LRRN3	54674	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	110764538	110764538	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	LRRN3	NM_018334	exon2	c.1710delA	p.R570fs	TGCTCGAATACCA	.	71.0	20.0	61.0	0.0	.	154
MBOAT2	129642	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	9022691	9022691	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MBOAT2	NM_138799	exon6	c.G456A	p.M152I	CCGAAACATCCCT	.	153.0	47.0	173.0	1.0	.	90
MEGF8	1954	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	42837807	42837807	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MEGF8	NM_001271938	exon2	c.G238T	p.E80X	GACACAGAGTGCA	.	115.0	35.0	120.0	0.0	.	23
MLXIPL	51085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73013995	73013995	+	Missense_Mutation	SNP	G	G	A	rs146487355	byfrequency	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MLXIPL	NM_032954	exon8	c.C932T	p.P311L	ATGGGCGGCTGTG	.	85.0	27.0	73.0	0.0	G|0.998;A|0.002	91
MRPS35	60488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	27908279	27908279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MRPS35	NM_021821	exon8	c.G868A	p.E290K	GAAATTGAAGAGT	.	70.0	27.0	120.0	0.0	.	90
MUC5B	727897	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1267292	1267292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	.	NM_002458	exon31	c.C9182A	p.S3061Y	CCAAATCCACAGC	.	409.0	123.0	397.0	1.0	.	.
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	20	62839434	62839434	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G885A	p.E295E	AGAGGAGGAGGAA	.	96.0	7.0	89.0	0.0	.	704
MYT1	4661	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	62839416	62839416	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	MYT1	NM_004535	exon7	c.G867A	p.E289E	GGAGGAGGAGGAA	.	80.0	14.0	68.0	0.0	.	704
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	15378653	15378653	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NBAS	NM_015909	exon45	c.C5882G	p.S1961X	GCAAGTGATTTCT	.	82.0	35.0	120.0	0.0	.	94
NFS1	9054	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34263098	34263098	+	Missense_Mutation	SNP	G	G	A	rs200454792		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NFS1	NM_021100	exon8	c.C817T	p.R273W	GGGGCCGGCGACG	.	160.0	81.0	131.0	0.0	G|0.999;A|0.000	92
NLGN1	22871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173998531	173998531	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NLGN1	NM_014932	exon7	c.G1910T	p.R637I	CTTTCAGACCTAC	.	157.0	53.0	186.0	0.0	.	231
NOL7	51406	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13618350	13618350	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	NOL7	NM_016167	exon5	c.T479C	p.V160A	TTAAAGTACAAAA	.	263.0	60.0	223.0	1.0	.	90
OR5K3	403277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98109590	98109590	+	Silent	SNP	G	G	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OR5K3	NM_001005516	exon1	c.G81C	p.L27L	TGTTCTGTTTGTG	.	218.0	58.0	289.0	0.0	.	68
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4199475	4199475	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	OTOP1	NM_177998	exon5	c.G1086T	p.G362G	CGCAGCCCCCATA	.	176.0	54.0	179.0	0.0	.	92
PKD1L2	114780	broad.mit.edu;ucsc.edu;mdanderson.org	37	16	81142804	81142804	+	RNA	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PKD1L2	.	.	.	.	CCTCCTCGTAGTT	.	150.0	41.0	144.0	0.0	.	92
PTPLAD2	401494	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008070	21008070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C566T	p.S189F	TAGATGGATAAGT	.	81.0	19.0	135.0	1.0	.	91
PTPLAD2	401494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21008109	21008109	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	PTPLAD2	NM_001010915	exon6	c.C527T	p.S176L	CCAAATGATTCAA	.	84.0	21.0	133.0	0.0	.	91
RAD1	5810	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	34914910	34914910	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RAD1	NM_002853	exon2	c.A88G	p.I30V	TCAAGATAGTGGA	.	255.0	66.0	304.0	1.0	.	227
RASSF8	11228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	26217450	26217450	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RASSF8	NM_007211	exon4	c.C123A	p.T41T	GTACACCCTTATA	.	104.0	32.0	163.0	0.0	.	90
RBL1	5933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35683995	35683995	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	RBL1	NM_183404	exon11	c.G1428A	p.M476I	CTGAACCATTACA	.	79.0	39.0	71.0	0.0	.	419
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43381915	43381915	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNRK	NM_017719	exon5	c.C868G	p.L290V	AAAAATCTCTCGG	.	217.0	70.0	200.0	0.0	.	815
SNTB1	6641	hgsc.bcm.edu;broad.mit.edu	37	8	121824005	121824005	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTB1	NM_021021	exon1	c.G79T	p.E27X	AAACTTCCAGCAG	.	42.0	5.0	19.0	0.0	.	228
SNTG2	54221	hgsc.bcm.edu;broad.mit.edu	37	2	1093900	1093900	+	Missense_Mutation	SNP	C	C	T	rs192264442	alternate_allele	TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SNTG2	NM_018968	exon3	c.C229T	p.R77C	ACACTCCGCAGAC	.	88.0	4.0	116.0	0.0	C|0.998;A|0.002	136
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54876897	54876897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SPTBN1	NM_003128	exon26	c.T5348G	p.L1783R	ATGGCCTCAATGA	.	258.0	80.0	279.0	0.0	.	140
ST3GAL6	10402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98487331	98487331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	ST3GAL6	NM_001271145	exon2	c.A206C	p.Y69S	TCCTCTATTATGT	.	121.0	41.0	188.0	0.0	.	91
SULT6B1	391365	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	37414600	37414600	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	SULT6B1	NM_001032377	exon2	c.G96T	p.W32C	GAGAATCCAGTTT	.	21.0	5.0	39.0	0.0	.	91
TANC2	26115	broad.mit.edu;bcgsc.ca	37	17	61315195	61315196	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	-	-	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TANC2	NM_025185	exon6	c.568_569insA	p.E190fs	TATTCTGAAAATG	.	42.0	9.0	55.0	0.0	.	24
TGFB2	7042	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	218609331	218609331	+	Silent	SNP	A	A	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TGFB2	NM_001135599	exon6	c.A858G	p.T286T	CTCCACATATACC	.	73.0	22.0	66.0	0.0	.	710
THBS1	7057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	39886581	39886581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	THBS1	NM_003246	exon21	c.G3445A	p.G1149R	AGACTAGGGTTGT	.	95.0	29.0	108.0	0.0	.	653
TLR9	54106	broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52256679	52256679	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TLR9	NM_017442	exon2	c.C1653A	p.D551E	GCTGAGGTCCAGG	.	130.0	49.0	84.0	1.0	.	587
TMIGD1	388364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28656378	28656378	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TMIGD1	NM_206832	exon3	c.C252T	p.S84S	AGAGCTGGAATTG	.	176.0	47.0	186.0	0.0	.	90
TNXB	7148	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32063403	32063403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TNXB	NM_019105	exon3	c.G2227A	p.E743K	AGTCTTCGCCAGC	.	580.0	96.0	300.0	1.0	.	90
TPCN2	219931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	68854594	68854594	+	Silent	SNP	G	G	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TPCN2	NM_139075	exon24	c.G2100A	p.K700K	TCACAAGTGGGAC	.	69.0	22.0	67.0	0.0	.	90
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179499955	179499955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	TTN	NM_001267550	exon228	c.A41961C	p.E13987D	TGAGATTTCTGCA	.	119.0	39.0	130.0	0.0	.	636
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	93835657	93835657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBE2N	NM_003348	exon1	c.G4A	p.A2T	GCCCGGCCATCTT	.	139.0	57.0	115.0	0.0	.	659
UBQLN3	50613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5529136	5529136	+	Silent	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UBQLN3	NM_017481	exon2	c.G1653T	p.G551G	ACCCGTCCCTGCT	.	95.0	27.0	89.0	0.0	.	93
UNC119B	84747	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121151187	121151187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	UNC119B	NM_001080533	exon2	c.T355G	p.S119A	TGCGTTTCAGGTA	.	151.0	49.0	171.0	0.0	.	69
VAV3	10451	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108116734	108116734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	VAV3	NM_006113	exon26	c.G2437T	p.D813Y	CCACATCTCCTTT	.	137.0	67.0	223.0	2.0	.	1339
WASL	8976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123334793	123334793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WASL	NM_003941	exon8	c.G802A	p.V268I	TTTTAACAGCTTC	.	100.0	24.0	87.0	0.0	.	90
WEE2	494551	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	141408580	141408580	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-DD-A4NG-01A-11D-A27I-10	TCGA-DD-A4NG-10A-01D-A27I-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	03c88506-d72e-4a44-a34e-a7f0564f1799	2b8a07c1-c041-4779-b4df-4bd6a8128dd8	.	WEE2	NM_001105558	exon1	c.22delA	p.K8fs	ATTGACAAAGAAC	.	96.0	50.0	103.0	0.0	.	305
