Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A2ML1	144568	bcgsc.ca;mdanderson.org	37	12	8994020	8994020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	A2ML1	NM_144670	exon11	c.T1136A	p.V379E	TTCTGGTGATTTA	.	71.0	26.0	77.0	2.0	.	93
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	48431663	48431663	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ABCA13	NM_152701	exon38	c.G11800T	p.E3934X	GTCCGGGAACATT	.	56.0	21.0	67.0	0.0	.	521
ABCA5	23461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	67287403	67287403	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ABCA5	NM_018672	exon11	c.G1560A	p.K520K	TGTACTCTTTCCT	.	58.0	18.0	101.0	0.0	.	93
ACTR6	64431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	100594687	100594687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ACTR6	NM_022496	exon1	c.G58A	p.E20K	AGCCATGAAAATG	.	43.0	11.0	43.0	0.0	.	91
ADAM18	8749	broad.mit.edu;bcgsc.ca	37	8	39505935	39505935	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADAM18	NM_014237	exon12	c.G1119A	p.E373E	ATTTGAGACTAAA	.	158.0	12.0	167.0	1.0	.	228
ADAM18	8749	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39505913	39505913	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADAM18	NM_014237	exon12	c.G1097C	p.R366T	ACTATAGATATTT	.	163.0	12.0	146.0	0.0	.	228
ADRA1A	148	ucsc.edu;bcgsc.ca	37	8	26627995	26627995	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ADRA1A	NM_033303	exon2	c.T1072C	p.Y358H	GGGTGTAGCCCAG	.	28.0	4.0	43.0	0.0	.	587
AKAP4	8852	broad.mit.edu;bcgsc.ca	37	X	49957907	49957907	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	AKAP4	NM_003886	exon5	c.C1457A	p.P486Q	TTGCATGGGTCTG	.	53.0	39.0	60.0	2.0	.	540
AMOTL2	51421	broad.mit.edu;ucsc.edu;mdanderson.org	37	3	134076549	134076549	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	AMOTL2	NM_016201	exon10	c.T2341G	p.X781G	TCCTTCAGATCAG	.	33.0	5.0	44.0	0.0	.	135
AQPEP	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	115323605	115323605	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_173800	exon4	c.G1074C	p.L358F	GGATTTGTTTAAT	.	95.0	13.0	186.0	0.0	.	.
ARHGAP15	55843	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	144314011	144314011	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ARHGAP15	NM_018460	exon11	c.C960A	p.G320G	TAGTGGCAATCTG	.	50.0	24.0	68.0	1.0	.	653
ARNT2	9915	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	80762629	80762629	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ARNT2	NM_014862	exon4	c.A265G	p.M89V	TCCGACATGGTCC	.	20.0	8.0	50.0	0.0	.	175
ASCC3	10973	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	101166124	101166124	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ASCC3	NM_006828	exon12	c.G1906A	p.E636K	TGGATTCCACCTA	.	49.0	19.0	75.0	0.0	.	96
ATP2C2	9914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	84444352	84444352	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ATP2C2	NM_014861	exon6	c.G496T	p.V166F	AAGATGGTTCCTC	.	31.0	16.0	36.0	0.0	.	91
C10orf11	83938	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	77795792	77795792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	C10orf11	NM_032024	exon2	c.G74A	p.R25K	CATTCAGGAGCCT	.	33.0	14.0	56.0	1.0	.	90
C9orf156	51531	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100667207	100667207	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	C9orf156	NM_016481	exon5	c.G1134T	p.V378V	TGACAGCACAGCC	.	28.0	5.0	38.0	0.0	.	90
CBX4	8535	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	77808471	77808471	+	Missense_Mutation	SNP	G	G	A	rs138355116		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	CBX4,abdomen,malignant_melanoma,0	CBX4	NM_003655	exon5	c.C970T	p.P324S	TGGGCGGCGCCTC	.	27.0	11.0	39.0	0.0	.	228
CDRT1	374286	broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	15522794	15522794	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CDRT1	NM_006382	exon1	c.C33T	p.A11A	ATAGGGGGCATTC	.	93.0	35.0	174.0	1.0	.	68
CFI	3426	broad.mit.edu;bcgsc.ca	37	4	110682850	110682850	+	Splice_Site	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CFI	NM_000204	exon5	c.483-2A>T	.	CACCTCTGCAAAT	.	14.0	7.0	29.0	0.0	.	90
CGN	57530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151502577	151502577	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CGN	NM_020770	exon12	c.C2299T	p.L767L	GACAAGCTGCAGC	.	69.0	9.0	56.0	0.0	.	93
CHDH	55349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	53851908	53851908	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CHDH	NM_018397	exon9	c.A1681G	p.I561V	TCATGATTGTGGG	.	56.0	25.0	88.0	0.0	.	91
CLEC2A	387836	ucsc.edu;mdanderson.org	37	12	10066275	10066275	+	Nonsense_Mutation	SNP	C	C	A	rs115598241	byfrequency;alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001130711	exon5	c.G415T	p.E139X	TAATTTCAAACCT	.	20.0	4.0	18.0	0.0	C|0.984;G|0.016	.
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	137630354	137630354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	COL5A1	NM_000093	exon10	c.G1424A	p.G475D	CAGAAGGCCCCGC	.	40.0	26.0	37.0	0.0	.	524
CPNE9	151835	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9759770	9759770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CPNE9	.	.	.	.	GCGCCTATGCCAT	.	40.0	15.0	59.0	0.0	.	70
CUBN	8029	broad.mit.edu;ucsc.edu	37	10	16870834	16870834	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	CUBN	NM_001081	exon66	c.C10734A	p.S3578R	TGGAGAGCTGGCG	.	45.0	4.0	55.0	1.0	.	166
CXorf64	100130613	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	125955203	125955203	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001122716	exon2	c.G582C	p.E194D	AATGGAGGTGCCG	.	43.0	31.0	47.0	1.0	.	.
DDR1	780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30866689	30866689	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DDR1	NM_013994	exon16	c.G2494T	p.V832L	AGTGACGTGTGGG	.	78.0	31.0	83.0	0.0	.	1403
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	375432	375432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DIP2C	NM_014974	exon30	c.T3694C	p.S1232P	AGTAGGAGCAAAA	.	16.0	7.0	30.0	0.0	.	156
DNAJB5	25822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34993331	34993331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DNAJB5	NM_001135004	exon3	c.A443C	p.D148A	ACCCAGACAAGAA	.	43.0	16.0	46.0	0.0	.	226
DSPP	1834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	88535262	88535262	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DSPP	NM_014208	exon5	c.A1448G	p.N483S	GTGACAATAACAG	.	37.0	24.0	87.0	0.0	.	90
DYNC1H1	1778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	102446826	102446826	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	DYNC1H1	NM_001376	exon5	c.T900G	p.T300T	CCTGACTCTGGAT	.	28.0	11.0	50.0	0.0	.	98
ECD	11319	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	74912126	74912126	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ECD	NM_001135752	exon7	c.A837C	p.P279P	CCGGTCTGGCACA	.	44.0	9.0	46.0	0.0	.	91
ENDOG	2021	broad.mit.edu;ucsc.edu	37	9	131584861	131584861	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ENDOG	NM_004435	exon3	c.T866G	p.L289R	GCAGCCTCAAGGC	.	25.0	5.0	24.0	0.0	.	90
EPHA7	2045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	94120578	94120578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	EPHA7	NM_004440	exon3	c.G473A	p.G158D	AGGTCACCTTGGG	.	80.0	28.0	131.0	0.0	.	1453
FAHD2B	151313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97751541	97751541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FAHD2B	NM_199336	exon5	c.C580T	p.R194C	AGTCACGAGCACT	.	98.0	44.0	137.0	0.0	.	90
FAM13C	220965	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61028335	61028335	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FAM13C	NM_198215	exon8	c.T920C	p.F307S	TGTTCAAATTTTT	.	66.0	13.0	92.0	0.0	.	70
FCGR1A	2209	broad.mit.edu;bcgsc.ca	37	1	149755799	149755799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FCGR1A	NM_000566	exon3	c.T293A	p.L98Q	TACAGCTGGAAAT	.	294.0	91.0	331.0	0.0	.	23
FIGN	55137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	164468244	164468244	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FIGN	NM_018086	exon3	c.G98C	p.R33P	GGAGACCGAGTGG	.	64.0	21.0	77.0	1.0	.	156
FN1	2335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	216256381	216256381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FN1	NM_212482	exon26	c.C4226A	p.P1409H	TCTGAAGGAGAAA	.	66.0	21.0	44.0	0.0	.	584
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79295351	79295351	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FRAS1	NM_001166133	exon25	c.G3097T	p.V1033F	CAGTGTGTCCAGG	.	33.0	21.0	59.0	0.0	.	68
FREM2	341640	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39263789	39263789	+	Missense_Mutation	SNP	G	G	T	rs7327915	byfrequency;alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FREM2	NM_207361	exon1	c.G2308T	p.V770L	TCAGTCGTGGTGA	.	35.0	18.0	52.0	0.0	G|0.960;A|0.040	100
FRMD4A	55691	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	13699408	13699408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	FRMD4A	NM_018027	exon22	c.C2181A	p.S727R	GTCGGGGCTCCCG	.	25.0	10.0	18.0	0.0	.	229
GATA4	2626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	11615852	11615852	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GATA4	NM_002052	exon7	c.C1197T	p.V399V	CCCTGTCCTCTCG	.	40.0	15.0	43.0	0.0	.	90
GCLM	2730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	94354618	94354618	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GCLM	NM_002061	exon7	c.G753A	p.S251S	AATGACCGAATAC	.	47.0	19.0	73.0	0.0	.	91
GDPD3	79153	ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30116234	30116234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GDPD3	NM_024307	exon10	c.C916A	p.H306N	GGTAGTGCCGCAG	.	30.0	5.0	32.0	0.0	.	90
GPC5	2262	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	92797096	92797096	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPC5	NM_004466	exon7	c.G1415T	p.R472I	AGGGTAGATCACC	.	59.0	19.0	80.0	2.0	.	519
GPR124	25960	broad.mit.edu;ucsc.edu	37	8	37691506	37691506	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPR124	NM_032777	exon11	c.A1468G	p.M490V	GTGGACATGGCCA	.	48.0	5.0	56.0	0.0	.	157
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	89948314	89948314	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GPR98	NM_032119	exon19	c.C3568T	p.H1190Y	ATTCTCCATGCTT	.	72.0	39.0	148.0	0.0	.	103
GREB1	9687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11716535	11716535	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GREB1	NM_148903	exon5	c.T511C	p.F171L	ACGGAATTCTCCA	.	165.0	37.0	147.0	0.0	.	91
GUF1	60558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	44693809	44693809	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	GUF1	NM_021927	exon13	c.T1606C	p.Y536H	TCTGGATATGCTA	.	41.0	15.0	59.0	0.0	.	91
HELT	391723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	185941802	185941802	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HELT	NM_001029887	exon4	c.C860T	p.A287V	GCCCAGCGCAGCA	.	16.0	13.0	11.0	0.0	.	226
HEPACAM2	253012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92837990	92837990	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	HEPACAM2	NM_001039372	exon4	c.A915T	p.K305N	GGCTACTTTCTCA	.	97.0	32.0	134.0	0.0	.	157
IMPG1	3617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	76720891	76720891	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	IMPG1	NM_001563	exon8	c.A858T	p.L286F	AAATCCTAACACA	.	86.0	36.0	116.0	0.0	.	93
INPPL1	3636	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71943737	71943737	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	INPPL1	NM_001567	exon15	c.G1780T	p.D594Y	GCCTTTGACATCT	.	38.0	10.0	41.0	1.0	.	660
INSL4	3641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	5231621	5231621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	INSL4	NM_002195	exon1	c.C98A	p.P33H	GTGGTCCCCGATT	.	48.0	11.0	55.0	0.0	.	90
IPO8	10526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	30816574	30816574	+	Silent	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	IPO8	NM_006390	exon14	c.T1443G	p.L481L	TGCATGAAGTACC	.	28.0	13.0	22.0	0.0	.	227
ITGB4	3691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73723340	73723340	+	Missense_Mutation	SNP	G	G	T	rs146966502	alternate_allele	TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITGB4	NM_001005731	exon3	c.G145T	p.A49S	GACTGCGCCTACT	.	36.0	11.0	46.0	0.0	G|1.000;A|0.000	227
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226923399	226923399	+	Silent	SNP	T	T	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITPKB	NM_002221	exon2	c.A1761C	p.G587G	AGGGCTTCCCTGC	.	40.0	15.0	40.0	0.0	.	230
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33639857	33639857	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ITPR3	NM_002224	exon22	c.T2780C	p.M927T	CCACCATGGTGCT	.	31.0	11.0	33.0	0.0	.	1085
KHDC3L	154288	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	74072886	74072886	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001017361	exon2	c.G238T	p.D80Y	CGATTGGACCCTA	.	33.0	11.0	43.0	0.0	.	.
KHDC3L	154288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	74072885	74072885	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_001017361	exon2	c.G237T	p.L79F	TCGATTGGACCCT	.	32.0	10.0	43.0	0.0	.	.
KIF21B	23046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	200945972	200945972	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	KIF21B	NM_001252102	exon32	c.C4375T	p.L1459L	CCGTCAGGCACAT	.	33.0	13.0	52.0	0.0	.	96
KRTAP10-2	386679	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45970816	45970816	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	KRTAP10-2	NM_198693	exon1	c.T526A	p.S176T	ACGGGGAGGAGGT	.	18.0	7.0	25.0	0.0	.	135
LENG8	114823	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54966690	54966690	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	LENG8	NM_052925	exon8	c.G969A	p.A323A	GCAGGCGCGGCTG	.	22.0	8.0	25.0	0.0	.	91
MAP2K1	5604	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66729188	66729188	+	Silent	SNP	G	G	A	rs139364105		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MAP2K1	NM_002755	exon3	c.G396A	p.A132A	TGGTGCGTTCTAC	.	27.0	17.0	39.0	0.0	G|0.999;A|0.001	978
MAP3K7	6885	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	91269811	91269811	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MAP3K7	NM_145333	exon5	c.G466T	p.D156Y	TCAGGTCCCTGTG	.	93.0	46.0	169.0	0.0	.	980
MIR1229	100302156	ucsc.edu;mdanderson.org	37	5	179225293	179225293	+	RNA	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	.	.	.	.	GGCAGTGGTGAGA	.	19.0	9.0	14.0	0.0	.	.
MUT	4594	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49427174	49427174	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MUT	NM_000255	exon2	c.A6T	p.L2F	AGCTCTTAACATG	.	18.0	8.0	28.0	0.0	.	91
MYH9	4627	ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36689429	36689429	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MYH9	NM_002473	exon30	c.G4041A	p.E1347E	CTCCTCCTCCTCC	.	18.0	4.0	26.0	0.0	.	292
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	26462717	26462717	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	MYO3A	NM_017433	exon30	c.3524delC	p.T1175fs	AGGAAACCACCAA	.	61.0	27.0	75.0	0.0	.	1007
NBEAL2	23218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47040281	47040281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NBEAL2	NM_015175	exon23	c.A3296G	p.E1099G	CGAGGGAGTTCCT	.	31.0	9.0	48.0	1.0	.	69
NELFB	25920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140158810	140158810	+	Splice_Site	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_015456	exon6	c.896+1G>T	.	GCTGGGGTGAGGG	.	30.0	19.0	22.0	0.0	.	.
NFXL1	152518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	47850329	47850329	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NFXL1	NM_152995	exon23	c.A2587T	p.R863X	TCAGTCTGTTTTC	.	114.0	36.0	146.0	0.0	.	524
NGFR	4804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47587941	47587941	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NGFR	NM_002507	exon4	c.G736C	p.G246R	ACCCGAGGCACCA	.	30.0	15.0	33.0	0.0	.	947
NPY5R	4889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164272303	164272303	+	Missense_Mutation	SNP	C	C	T	rs146231711		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NPY5R	NM_006174	exon4	c.C878T	p.T293I	AGAAGACAGCATG	.	15.0	9.0	55.0	0.0	C|1.000;T|0.000	523
NTRK1	4914	broad.mit.edu;bcgsc.ca	37	1	156843727	156843727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NTRK1	NM_001012331	exon8	c.T1153C	p.F385L	TTCGAGTTCAACC	.	76.0	26.0	67.0	2.0	.	1393
NUP205	23165	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135300725	135300725	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NUP205	NM_015135	exon24	c.A3372G	p.L1124L	AGAGCTAAGGGTA	.	48.0	11.0	83.0	1.0	.	207
NUP210L	91181	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154067567	154067567	+	Silent	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	NUP210L	NM_001159484	exon15	c.G2031C	p.G677G	AGGACCCCCTTCA	.	60.0	23.0	98.0	1.0	.	77
OBSCN	84033	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	228496800	228496800	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OBSCN	NM_001271223	exon59	c.C15611T	p.A5204V	GTCCAGCTCCTGA	.	25.0	11.0	29.0	0.0	.	403
OGG1	4968	ucsc.edu;bcgsc.ca	37	3	9792767	9792767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OGG1	NM_016819	exon2	c.G276T	p.E92D	AGACGAGCTGGAG	.	52.0	5.0	56.0	0.0	.	660
OR10T2	128360	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	158368833	158368833	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OR10T2	NM_001004475	exon1	c.G424T	p.G142W	CCAACCCCAGCCT	.	57.0	21.0	71.0	2.0	.	70
OR4C46	119749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	51515655	51515655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	OR4C46	NM_001004703	exon1	c.G374T	p.C125F	CCATCTGCAAGCC	.	70.0	38.0	100.0	0.0	.	69
PAK3	5063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110416299	110416299	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PAK3	NM_001128168	exon9	c.A928G	p.I310V	GAAAAAATTGGTC	.	97.0	81.0	103.0	1.0	.	1043
PAX2	5076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	102584502	102584502	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PAX2	NM_003987	exon9	c.G1086A	p.V362V	AATGGTGCCTGGT	.	21.0	9.0	21.0	0.0	.	90
PCDH15	65217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	55568699	55568699	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDH15	.	.	.	.	ACAGGGGCTGGTC	.	105.0	50.0	162.0	0.0	.	193
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215989	140215989	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDHA7	NM_031852	exon1	c.A2021T	p.Q674L	GCGGCCAGGCACC	.	24.0	15.0	26.0	0.0	.	94
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	5	140573688	140573688	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCDHB10	NM_018930	exon1	c.C1563A	p.Y521X	GGACTACGAGGCC	.	59.0	17.0	71.0	0.0	.	92
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82531973	82531973	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PCLO	NM_014510	exon9	c.G13522A	p.V4508I	CTGAAACTGTGTG	.	78.0	27.0	119.0	0.0	.	29
PDZD7	79955	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	102782138	102782138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PDZD7	NM_001195263	exon5	c.G547T	p.D183Y	CCACATCCACCCT	.	25.0	13.0	37.0	1.0	.	136
PLD4	122618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105398614	105398614	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PLD4	NM_138790	exon10	c.G1243T	p.V415L	GTGCCGGTGGGGA	.	34.0	13.0	39.0	0.0	.	651
PPFIBP1	8496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	27787982	27787982	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PPFIBP1	NM_003622	exon4	c.A204T	p.E68D	GAAAGAAGGCTTG	.	91.0	33.0	78.0	0.0	.	228
PRSS50	29122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46755757	46755757	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PRSS50	NM_013270	exon4	c.G705T	p.K235N	ATGGTCCTTCAAC	.	39.0	20.0	31.0	0.0	.	90
PTX3	5806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	157160183	157160183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	PTX3	NM_002852	exon3	c.G561A	p.M187I	CCCAATGCGTTCC	.	34.0	11.0	27.0	0.0	.	514
RINT1	60561	broad.mit.edu;ucsc.edu	37	7	105189009	105189009	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RINT1	NM_021930	exon7	c.T848A	p.L283X	ATGAATTACTTAC	.	62.0	6.0	88.0	0.0	.	517
RNF135	84282	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29326075	29326075	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RNF135	NM_032322	exon5	c.T1165C	p.F389L	CTTGCCTTCTATT	.	54.0	5.0	66.0	0.0	.	227
RNF149	284996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101911551	101911551	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RNF149	NM_173647	exon2	c.A553G	p.I185V	CCCCTATGGTCAT	.	66.0	14.0	89.0	0.0	.	290
RPL18	6141	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49121059	49121059	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RPL18	NM_000979	exon2	c.C79A	p.L27M	CCAACAGCCTCAG	.	42.0	27.0	46.0	0.0	.	90
RPP40	10799	broad.mit.edu;bcgsc.ca	37	6	5000046	5000050	+	Frame_Shift_Del	DEL	ATTTC	ATTTC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	ATTTC	ATTTC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RPP40	NM_006638	exon4	c.426_430del	p.142_144del	TACTAAATTTCAT	.	93.0	9.0	122.0	0.0	.	90
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38960151	38960151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR1	NM_001042723	exon27	c.G3763A	p.E1255K	CACTATGAGGTAA	.	19.0	13.0	29.0	0.0	.	100
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237711846	237711846	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR2	NM_001035	exon26	c.G3022T	p.A1008S	GTGTGGGCGCGGG	.	56.0	16.0	74.0	1.0	.	158
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33895514	33895514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	RYR3	NM_001243996	exon18	c.G2113T	p.V705F	AATGGTGTTGGTG	.	41.0	29.0	100.0	0.0	.	520
SEPT9	10801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	75303253	75303253	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SEPT9	NM_001113491	exon2	c.G50C	p.R17P	GGCTCCGGAGGCT	.	33.0	17.0	42.0	0.0	.	659
SETD2	29072	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47164729	47164729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SETD2	NM_014159	exon3	c.A1397G	p.K466R	GTCTTCTTATACT	.	48.0	23.0	71.0	1.0	.	1273
SH2B3	10019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111885820	111885820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SH2B3	NM_005475	exon8	c.T1442C	p.L481P	TCTCCCTTCCTCA	.	32.0	9.0	47.0	0.0	.	91
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164737493	164737493	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SI	NM_001041	exon28	c.C3320A	p.P1107Q	TCTGATGGCAGGC	.	73.0	23.0	85.0	0.0	.	104
SLC6A15	55117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	85277689	85277689	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLC6A15	NM_018057	exon5	c.C705A	p.A235A	GACCCAGGCAGCC	.	48.0	21.0	60.0	0.0	.	93
SLCO1C1	53919	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	20893142	20893145	+	Frame_Shift_Del	DEL	GGAA	GGAA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GGAA	GGAA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLCO1C1	NM_017435	exon12	c.1573_1576del	p.525_526del	TGTGTGGGAATTG	.	77.0	28.0	100.0	0.0	.	97
SLCO6A1	133482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	101813521	101813521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SLCO6A1	NM_173488	exon3	c.G661A	p.G221S	ATATACCACTGCT	.	25.0	17.0	95.0	0.0	.	96
SORCS1	114815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	108459041	108459041	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SORCS1	NM_001206572	exon9	c.C1344T	p.F448F	CAGGGTGAAGTAG	.	51.0	19.0	92.0	0.0	.	153
SPHK1	8877	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74382080	74382096	+	Frame_Shift_Del	DEL	GGCGTGCTCCCGCGGCC	GGCGTGCTCCCGCGGCC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GGCGTGCTCCCGCGGCC	GGCGTGCTCCCGCGGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SPHK1	NM_182965	exon3	c.283_299del	p.95_100del	CCCCGGGGCGTGC	.	28.0	10.0	32.0	0.0	.	1107
SPRR4	163778	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152944518	152944518	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SPRR4	NM_173080	exon2	c.A152C	p.K51T	AGGTCAAGAAGCA	.	81.0	8.0	86.0	0.0	.	68
STAB1	23166	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52547186	52547186	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	STAB1	NM_015136	exon30	c.G3199T	p.A1067S	GAGCTGGCCCGGC	.	113.0	32.0	148.0	2.0	.	139
STEAP3	55240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	120005515	120005515	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	STEAP3	NM_182915	exon4	c.C783A	p.P261P	GCTGCCCGTGTCC	.	43.0	21.0	32.0	0.0	.	91
SYNE2	23224	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	64593080	64593089	+	Frame_Shift_Del	DEL	TAAAAAATTG	TAAAAAATTG	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	TAAAAAATTG	TAAAAAATTG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	SYNE2	NM_182914	exon72	c.13590_13599del	p.4530_4533del	TTTGGATAAAAAA	.	58.0	18.0	66.0	0.0	.	164
TAAR1	134864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	132966704	132966704	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TAAR1	NM_138327	exon1	c.A439G	p.S147G	TCCAACTAATGAA	.	49.0	17.0	77.0	0.0	.	90
TADA2B	93624	ucsc.edu;bcgsc.ca	37	4	7056061	7056061	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TADA2B	NM_152293	exon2	c.C543T	p.A181A	GGATGCCGAGACG	.	52.0	6.0	54.0	0.0	.	68
TDRD6	221400	bcgsc.ca;mdanderson.org	37	6	46660241	46660241	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TDRD6	NM_001168359	exon1	c.A4376T	p.E1459V	GATGGGAAGTTAT	.	31.0	10.0	37.0	1.0	.	138
TEK	7010	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	27206621	27206621	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TEK	NM_000459	exon15	c.C2406A	p.A802A	TCTGGCCCTAAAC	.	29.0	10.0	50.0	1.0	.	1584
TFAP2D	83741	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50740396	50740396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TFAP2D	NM_172238	exon8	c.C1178T	p.A393V	TATGTGCAGCTCT	.	48.0	19.0	63.0	1.0	.	159
THBS2	7058	ucsc.edu;bcgsc.ca;mdanderson.org	37	6	169637837	169637837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	THBS2	NM_003247	exon9	c.G1183A	p.V395M	ACGTCACGGAGCA	.	19.0	5.0	25.0	0.0	.	95
TLE4	7091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	82267541	82267541	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TLE4	NM_007005	exon7	c.C424A	p.H142N	CATGGACATGGTC	.	69.0	16.0	88.0	0.0	.	524
TMEM132B	114795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	125834213	125834213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMEM132B	NM_052907	exon2	c.C268T	p.P90S	TATGGCCCATTTT	.	67.0	20.0	51.0	0.0	.	185
TMEM214	54867	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	27260450	27260450	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMEM214	NM_017727	exon9	c.G1032A	p.Q344Q	GTGTCAGCTCTAC	.	55.0	25.0	91.0	1.0	.	115
TMPRSS7	344805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111764772	111764772	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TMPRSS7	NM_001042575	exon4	c.G334C	p.D112H	GACATGGACTCTG	.	151.0	45.0	177.0	0.0	.	70
TNKS1BP1	85456	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	57080487	57080489	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TNKS1BP1	NM_033396	exon5	c.1673_1675del	p.558_559del	GACTCTCCCCATC	.	43.0	15.0	68.0	0.0	.	91
TNKS	8658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	9538246	9538246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TNKS	NM_003747	exon5	c.A1043T	p.E348V	GTAATGAAGAAAA	.	121.0	46.0	143.0	0.0	.	660
TOB1	10140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	48940660	48940661	+	Frame_Shift_Ins	INS	-	-	GC	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TOB1	NM_005749	exon2	c.719_720insGC	p.P240fs	TGCTGTGGCTGCT	.	27.0	9.0	36.0	0.0	.	226
TP53	7157	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	7578264	7578270	+	Frame_Shift_Del	DEL	GATAAGA	GATAAGA	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	GATAAGA	GATAAGA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	TP53,NS,carcinoma,-2	TP53	NM_000546	exon6	c.579_585del	p.193_195del	CACTCGGATAAGA	.	23.0	9.0	61.0	0.0	.	70225
TP63	8626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	189526152	189526152	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TP63	NM_001114979	exon4	c.C416T	p.A139V	ACCACGCGCAGAA	.	59.0	15.0	62.0	0.0	.	421
TRAF1	7185	ucsc.edu;bcgsc.ca	37	9	123675908	123675908	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRAF1	NM_005658	exon5	c.G403C	p.E135Q	CAGACTCCAGGCC	.	32.0	4.0	43.0	0.0	.	229
TRDMT1	1787	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17202313	17202313	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRDMT1	NM_004412	exon6	c.T450C	p.S150S	GGTTGGAGATAAT	.	121.0	38.0	198.0	0.0	.	227
TRIP10	9322	broad.mit.edu;bcgsc.ca	37	19	6750013	6750022	+	Frame_Shift_Del	DEL	AGCCCCAGAT	AGCCCCAGAT	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	AGCCCCAGAT	AGCCCCAGAT	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRIP10	NM_004240	exon11	c.1163_1172del	p.388_391del	GCTTGGAGCCCCA	.	28.0	9.0	37.0	0.0	.	228
TRPS1	7227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	116427295	116427295	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TRPS1	NM_014112	exon7	c.C2841A	p.N947K	AATGATGTTTAAA	.	122.0	53.0	173.0	2.0	.	229
TSTD2	158427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	100365038	100365038	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TSTD2	NM_139246	exon10	c.T1264C	p.C422R	CTCCACAGTATGA	.	63.0	26.0	91.0	0.0	.	92
TTLL12	23170	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43575637	43575637	+	Silent	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TTLL12	NM_015140	exon5	c.C828T	p.A276A	GTGCTCGGCGGGC	.	20.0	9.0	24.0	0.0	.	90
TUBGCP6	85378	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	50682494	50682494	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	TUBGCP6	NM_020461	exon1	c.A395G	p.Y132C	AGGAAGTAGTCTC	.	19.0	6.0	26.0	0.0	.	93
VAPA	9218	broad.mit.edu;mdanderson.org	37	18	9914271	9914271	+	Silent	SNP	G	G	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	VAPA	NM_003574	exon1	c.G18T	p.G6G	CTCAGGGGCCATG	.	21.0	5.0	15.0	0.0	.	90
VAV1	7409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6833726	6833726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	VAV1	NM_005428	exon18	c.C1713A	p.F571L	AGATTTCCCAGGA	.	28.0	15.0	36.0	0.0	.	1276
WFS1	7466	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	6303650	6303650	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	WFS1	NM_001145853	exon8	c.A2128C	p.T710P	CGCGTGACTGACA	.	34.0	11.0	31.0	0.0	.	91
XPOT	11260	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	64814173	64814173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	XPOT	NM_007235	exon8	c.C715A	p.L239I	GAAGTTCTACGGG	.	72.0	25.0	76.0	0.0	.	652
ZCCHC6	79670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88967620	88967620	+	Silent	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZCCHC6	NM_024617	exon2	c.G495T	p.T165T	TTCTGACGTGGTT	.	140.0	37.0	201.0	0.0	.	92
ZFHX4	79776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	77768145	77768145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZFHX4	NM_024721	exon10	c.G8988A	p.M2996I	TTTCATGATCAAT	.	52.0	20.0	55.0	0.0	.	98
ZNF28	7576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53303883	53303883	+	Silent	SNP	A	A	G	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF28	NM_006969	exon4	c.T1215C	p.H405H	TCCAGTATGAATC	.	46.0	30.0	52.0	0.0	.	91
ZNF582	147948	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56896171	56896171	+	Silent	SNP	C	C	T	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF582	NM_144690	exon5	c.G615A	p.G205G	GGCCTTCCCACAT	.	70.0	16.0	70.0	0.0	.	138
ZNF697	90874	bcgsc.ca;mdanderson.org	37	1	120165473	120165473	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZNF697	NM_001080470	exon3	c.G1493T	p.C498F	TTGCCGCACTCGA	.	50.0	22.0	42.0	2.0	.	23
ZNF845	91664	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	53855612	53855612	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	.	NM_138374	exon4	c.1684delG	p.G562fs	TTTCGTGGGCAGT	.	45.0	25.0	53.0	0.0	.	.
ZSCAN5B	342933	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	56704398	56704398	+	Silent	SNP	T	T	A	novel		TCGA-G3-A7M9-01A-23D-A34Z-10	TCGA-G3-A7M9-10A-01D-A34Z-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	6df05259-d701-492f-ab3f-5fc66ecb1c34	546c2c7d-b949-4ef6-96c8-9f2479352bf3	.	ZSCAN5B	NM_001080456	exon1	c.A24T	p.S8S	ACCCCATGAGAGT	.	38.0	6.0	46.0	0.0	.	24
