Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AADAT	51166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	170991792	170991792	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AADAT	NM_182662	exon7	c.A666G	p.K222K	ATCATATTTTCTT	.	157.0	69.0	173.0	0.0	.	90
ABCA7	10347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1051046	1051046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCA7	NM_019112	exon19	c.T2679A	p.F893L	GCTGTTTGACATG	.	24.0	14.0	47.0	0.0	.	98
ABCE1	6059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	146032129	146032129	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ABCE1	NM_002940	exon8	c.623delA	p.H208fs	TAACCCACCTAAA	.	122.0	47.0	115.0	0.0	.	91
ACACA	31	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	35545226	35545226	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACACA	NM_198834	exon39	c.G4767A	p.R1589R	TGCTGTCCTGGAG	.	105.0	43.0	153.0	1.0	.	154
ACAP1	9744	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7254302	7254302	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACAP1	NM_014716	exon21	c.G2106A	p.A702A	TGAAGCGGCCCAG	.	30.0	20.0	53.0	0.0	.	153
ACSM2A	123876	broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	20476838	20476838	+	Splice_Site	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACSM2A	NM_001010845	exon4	c.178-1G>A	.	TCCTCAGGCTGGC	.	202.0	73.0	190.0	2.0	.	91
ACVR2A	92	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	148674983	148674983	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ACVR2A	NM_001616	exon6	c.A804G	p.A268A	CACAGCATTTCAT	.	110.0	29.0	127.0	0.0	.	831
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123302161	123302161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ADAD1	NM_139243	exon4	c.C187A	p.P63T	CCAGAGCCGTTGC	.	357.0	96.0	289.0	0.0	.	90
AGAP1	116987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	237032735	237032735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AGAP1	NM_001037131	exon18	c.A2543G	p.N848S	GGAACAACAGCAG	.	124.0	26.0	80.0	0.0	.	93
AGO4	192670	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36292423	36292423	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_017629	exon7	c.G835T	p.A279S	CGGCCAGCCAGTC	.	47.0	25.0	59.0	0.0	.	.
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	41574509	41574514	+	In_Frame_Del	DEL	AATATT	AATATT	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AATATT	AATATT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANK1	NM_001142446	exon13	c.1460_1465del	p.487_489del	GGAGTAAATATTT	.	225.0	49.0	240.0	0.0	.	716
ANKIB1	54467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92015870	92015870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKIB1	NM_019004	exon12	c.T1665G	p.H555Q	AAAACATAGTTCG	.	278.0	51.0	196.0	0.0	.	432
ANKS1B	56899	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	99640465	99640465	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_152788	exon13	c.C1934G	p.P645R	GGCAAAGGACTGT	.	180.0	73.0	206.0	0.0	.	.
ANKS6	203286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	101498813	101498813	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ANKS6	NM_173551	exon15	c.C2604G	p.S868R	ACAGGGGCTGTTG	.	38.0	13.0	38.0	0.0	.	92
APBB2	323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	40892391	40892391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APBB2	NM_004307	exon12	c.G1519A	p.D507N	CATTGTCGCGGCC	.	57.0	24.0	64.0	0.0	.	92
APC2	10297	hgsc.bcm.edu;broad.mit.edu	37	19	1468353	1468354	+	Nonsense_Mutation	INS	-	-	AGT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APC2	NM_005883	exon15	c.5053_5054insAGT	p.E1685delinsEX	AGCGTGGAGTGGC	.	36.0	25.0	50.0	0.0	.	290
APEX1	328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20925548	20925548	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	APEX1	NM_080648	exon5	c.T838A	p.W280R	GTTGGTTGGCGCC	.	156.0	52.0	175.0	0.0	.	661
ARID3B	10620	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74836589	74836589	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ARID3B	NM_006465	exon2	c.T312C	p.D104D	TGGGGATGATGAA	.	144.0	27.0	187.0	0.0	.	90
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177030375	177030375	+	Missense_Mutation	SNP	G	G	T	rs138326291	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ASTN1	NM_004319	exon2	c.C310A	p.P104T	CCAAAGGGATATC	.	63.0	50.0	79.0	0.0	G|1.000;C|0.000	319
ATP8A2	51761	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	26043153	26043153	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP8A2	NM_016529	exon2	c.G115T	p.D39Y	GCAGAGGATGAGA	.	66.0	20.0	51.0	1.0	.	138
ATP9A	10079	hgsc.bcm.edu;broad.mit.edu	37	20	50292712	50292712	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ATP9A	NM_006045	exon10	c.G835C	p.E279Q	GGAGTTCTCTGCC	.	132.0	7.0	105.0	0.0	.	94
AVL9	23080	ucsc.edu;bcgsc.ca;mdanderson.org	37	7	32623585	32623585	+	RNA	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	AVL9	.	.	.	.	GCTCCCAGGCTGT	.	145.0	60.0	180.0	0.0	.	90
B3GAT1	27087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134252717	134252717	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	B3GAT1	NM_054025	exon4	c.A805C	p.S269R	CCTGGCTTCGCTG	.	76.0	34.0	76.0	0.0	.	91
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	99640967	99640967	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BCL11B	NM_138576	exon4	c.C2206A	p.P736T	CGAAGGGCGACTG	.	33.0	14.0	14.0	0.0	.	1147
BNIP3	664	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	133787338	133787338	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BNIP3	NM_004052	exon2	c.T156A	p.H52Q	AGACTCATGCTGT	.	40.0	9.0	61.0	0.0	.	227
BSN	8927	hgsc.bcm.edu;broad.mit.edu	37	3	49690047	49690048	+	In_Frame_Ins	INS	-	-	AGCAGC	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	BSN	NM_003458	exon5	c.3058_3059insAGCAGC	p.K1020delinsKQQ	GAAGCAAAGCAGC	.	46.0	17.0	44.0	0.0	.	97
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29297116	29297116	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C2orf71	NM_001029883	exon1	c.A12G	p.T4T	TGAAGGTGTACAC	.	47.0	17.0	52.0	0.0	.	91
C3	718	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	6678293	6678293	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	C3	NM_000064	exon40	c.4720delG	p.D1574fs	CCTCATCCGAGCC	.	51.0	29.0	94.0	0.0	.	95
CAST	831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96083056	96083056	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CAST	NM_001042440	exon16	c.A1169G	p.D390G	ATAAAGATGGAAA	.	279.0	77.0	319.0	0.0	.	517
CCDC146	57639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76889445	76889445	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCDC146	NM_020879	exon8	c.A878T	p.E293V	TAAAGGAAGTTGA	.	178.0	31.0	146.0	0.0	.	70
CCDC33	80125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74560789	74560789	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	CCDC33,NS,carcinoma,+1	CCDC33	NM_025055	exon5	c.T536C	p.M179T	ACCACATGGCTCT	.	25.0	6.0	32.0	0.0	.	95
CCZ1	51622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5944735	5944735	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CCZ1	NM_015622	exon7	c.C533T	p.T178M	TGCAAACGCTACA	.	638.0	208.0	737.0	0.0	.	44
CEACAM3	1084	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42301829	42301829	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CEACAM3	NM_001815	exon2	c.A373T	p.I125L	CAAGTCATAAAGT	.	63.0	38.0	99.0	0.0	.	91
CELA2A	63036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	15788106	15788106	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CELA2A	NM_033440	exon3	c.G180T	p.G60G	CGGAGGGTCCCTG	.	122.0	39.0	142.0	0.0	.	92
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11056338	11056338	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CLEC16A	NM_015226	exon3	c.T236G	p.V79G	TGTTTGTTTTCTT	.	94.0	38.0	99.0	0.0	.	92
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99013614	99013614	+	Missense_Mutation	SNP	C	C	A	rs183838250		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA3	NM_001298	exon8	c.C1981A	p.R661S	AAGCAGCGTCTCA	.	49.0	20.0	48.0	0.0	C|0.999;A|0.000	96
CNGA4	1262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6261787	6261787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CNGA4	NM_001037329	exon4	c.G763A	p.V255I	CTGGCCGTCATGG	.	76.0	24.0	60.0	0.0	.	91
COL22A1	169044	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	139620230	139620230	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	COL22A1	NM_152888	exon57	c.C3981A	p.G1327G	ATTCTTGCCCTGG	.	68.0	29.0	54.0	1.0	.	103
CSF2RB	1439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37334154	37334154	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSF2RB	NM_000395	exon14	c.G2304T	p.E768D	TGTGGAGCTCCCT	.	36.0	16.0	33.0	0.0	.	93
CSNK1A1L	122011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	37679220	37679220	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CSNK1A1L	NM_145203	exon1	c.G174C	p.L58L	CTCATACAGCAAC	.	48.0	18.0	54.0	0.0	.	396
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99434099	99434099	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon2	c.T95G	p.L32R	ATAAACTTTTTAA	.	262.0	124.0	151.0	0.0	.	92
CYP3A43	64816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	99447235	99447235	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYP3A43	NM_057096	exon7	c.C588T	p.L196L	TTCTCTCAACAAT	.	246.0	145.0	173.0	0.0	.	92
CYTIP	9595	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	158283867	158283867	+	Nonsense_Mutation	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	CYTIP	NM_004288	exon6	c.542delT	p.L181X	ACCTTTAAAACCT	.	97.0	38.0	91.0	0.0	.	93
DAGLB	221955	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6474591	6474591	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DAGLB	NM_139179	exon4	c.G480A	p.G160G	CATTTTCCCCCCA	.	72.0	28.0	61.0	0.0	.	70
DBN1	1627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176893949	176893949	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DBN1	NM_080881	exon8	c.C676T	p.R226C	GGTAGCGCCGCTC	.	31.0	14.0	39.0	0.0	.	587
DEF6	50619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	35285774	35285774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEF6	NM_022047	exon6	c.C914T	p.A305V	GGACAGCTGGTGA	.	56.0	20.0	72.0	0.0	.	227
DEFB114	245928	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49928115	49928115	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DEFB114	NM_001037499	exon2	c.G100C	p.G34R	AACGACCGTAACG	.	121.0	54.0	126.0	0.0	.	91
DLGAP1	9229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	3879551	3879551	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DLGAP1	NM_001242761	exon4	c.C518T	p.A173V	GCCTGCGCCTCGT	.	31.0	11.0	26.0	0.0	.	229
DNAH17	8632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76490821	76490821	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH17	NM_173628	exon40	c.G6124C	p.A2042P	CCTCTGCCCGGCT	.	33.0	15.0	32.0	0.0	.	142
DNAH7	56171	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	196771386	196771387	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DNAH7	NM_018897	exon27	c.4332_4333insT	p.L1444fs	TACCTTCAGGTTA	.	302.0	106.0	326.0	0.0	.	102
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169111319	169111319	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DOCK2	NM_004946	exon8	c.G726C	p.M242I	CTTCATGTCTCTC	.	147.0	44.0	96.0	0.0	.	97
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096118	167096118	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	DUSP27	NM_001080426	exon5	c.G1750A	p.V584I	TCCGACGTCAGCC	.	46.0	31.0	37.0	0.0	.	71
EDNRB	1910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	78477336	78477336	+	Silent	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EDNRB	NM_001201397	exon4	c.G1026C	p.L342L	GATTCGCAGATAA	.	87.0	26.0	130.0	0.0	.	522
EFR3B	22979	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	25351059	25351060	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_014971	exon6	c.493_494insG	p.M165fs	ATTCGAATGTCAG	.	63.0	20.0	64.0	0.0	.	.
EIF4E1B	253314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176070686	176070686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001099408	exon5	c.G247T	p.D83Y	TGGCAGGACAACC	.	90.0	25.0	75.0	0.0	.	.
EMP1	2012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	13366481	13366481	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EMP1	NM_001423	exon3	c.C147A	p.C49X	TAGCTGCAGTGAC	.	254.0	69.0	294.0	0.0	.	90
ERCC3	2071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	128038082	128038082	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERCC3	NM_000122	exon9	c.G1468T	p.E490X	TGGCTTCGTAGAG	.	114.0	40.0	107.0	0.0	.	723
ERN2	10595	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23703609	23703609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ERN2	NM_033266	exon18	c.A2288G	p.Y763C	AGCACGTAGTAGA	.	21.0	8.0	21.0	0.0	.	322
EVPL	2125	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	74014610	74014611	+	Frame_Shift_Ins	INS	-	-	CCCT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EVPL	NM_001988	exon12	c.1356_1357insAGGG	p.G452fs	GCCAGGGCCCTGC	.	124.0	26.0	77.0	0.0	.	93
EXT1	2131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	118817113	118817113	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	EXT1	NM_000127	exon10	c.T1903G	p.S635A	AATGGGAGTATAG	.	177.0	74.0	101.0	0.0	.	660
F2RL3	9002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	17001135	17001135	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	F2RL3	NM_003950	exon2	c.G861T	p.V287V	CGCAGTGGTGCTG	.	36.0	19.0	18.0	0.0	.	226
FAM47A	158724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	34149528	34149528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAM47A	NM_203408	exon1	c.C868G	p.P290A	CTGTGGGTTCGTC	.	71.0	56.0	70.0	0.0	.	134
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126367528	126367528	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FAT4	NM_024582	exon8	c.G7274A	p.R2425K	TAGATAGGGAAAC	.	69.0	30.0	92.0	0.0	.	108
FBXL5	26234	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15613952	15613952	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FBXL5	NM_012161	exon10	c.G1936T	p.D646Y	CCAAATCCTGCAG	.	204.0	88.0	230.0	1.0	.	226
FGFR2	2263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	123274695	123274695	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FGFR2	NM_022970	exon9	c.A1226G	p.D409G	CTGAAGTCTGGCT	.	158.0	31.0	172.0	0.0	.	2607
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131007517	131007517	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FNIP1	NM_133372	exon14	c.T2620A	p.C874S	TTGTACACAATAT	.	135.0	58.0	110.0	0.0	.	92
FTMT	94033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121188325	121188325	+	Missense_Mutation	SNP	G	G	A	rs149286328	byfrequency;alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	FTMT	NM_177478	exon1	c.G667A	p.A223T	CCGGATGCTGGCC	.	76.0	24.0	57.0	0.0	G|0.999;T|0.001	91
GAS7	8522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9846500	9846500	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GAS7	NM_201433	exon7	c.G669T	p.L223L	CTGGAGCAGTAGT	.	36.0	24.0	84.0	0.0	.	1083
GIMAP4	55303	hgsc.bcm.edu;bcgsc.ca	37	7	150269571	150269571	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GIMAP4	NM_018326	exon3	c.T413A	p.L138Q	AGATCCTGAAAAT	.	66.0	18.0	91.0	0.0	.	91
GPR114	221188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	57604440	57604440	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR114	NM_153837	exon10	c.A1201T	p.M401L	CAGAACATGTCCA	.	20.0	8.0	18.0	0.0	.	90
GPR15	2838	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	98251158	98251158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GPR15	NM_005290	exon1	c.C281A	p.A94E	AAGAAGCATCTCT	.	85.0	32.0	115.0	0.0	.	91
GSE1	23199	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	85696964	85696964	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_014615	exon11	c.G2388A	p.L796L	GTTTTTGCAACTT	.	20.0	9.0	20.0	0.0	.	.
GTPBP1	9567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39125539	39125539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	GTPBP1	NM_004286	exon11	c.G1789T	p.G597C	AAAAAGGGCCCCC	.	70.0	18.0	76.0	0.0	.	91
HAP1	9001	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39881005	39881005	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HAP1	NM_177977	exon11	c.A1808C	p.H603P	GCCCCGTGGGGGC	.	17.0	5.0	36.0	1.0	.	92
HDAC4	9759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	240056268	240056268	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HDAC4	NM_006037	exon10	c.C1050T	p.S350S	GGGCAAGGATGGC	.	71.0	16.0	52.0	0.0	.	291
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32918508	32918508	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HLA-DMA	NM_006120	exon2	c.G161A	p.S54N	CTGGGACTCCCAT	.	46.0	13.0	45.0	0.0	.	90
HPDL	84842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	45793225	45793225	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPDL	NM_032756	exon1	c.C405T	p.R135R	GGAGCGCGCTGGC	.	104.0	40.0	80.0	0.0	.	90
HPR	3250	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	72108240	72108240	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	HPR	NM_020995	exon3	c.149delG	p.R50fs	TGTTTCGCTACCA	.	347.0	106.0	355.0	0.0	.	515
IL12B	3593	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	158753702	158753702	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IL12B	NM_002187	exon3	c.88+1G>A	.	TGGTTACCATCTT	.	111.0	31.0	69.0	1.0	.	90
IRX1	79192	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	3596419	3596419	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	IRX1	NM_024337	exon1	c.200delC	p.A67fs	CGGCGGCGGGGCC	.	38.0	13.0	28.0	0.0	.	228
ISM1	140862	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	13269286	13269286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ISM1	NM_080826	exon4	c.G743A	p.C248Y	ACGCGTGCACTGC	.	67.0	28.0	49.0	1.0	.	68
ITGA8	8516	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	15688879	15688879	+	Silent	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ITGA8	NM_003638	exon12	c.A1173C	p.A391A	TAAGTGTGCCATA	.	79.0	26.0	80.0	0.0	.	230
JKAMP	51528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	59961929	59961929	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	JKAMP	NM_016475	exon4	c.G445T	p.A149S	CATGAAGCCGTCT	.	190.0	69.0	211.0	0.0	.	67
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10610444	10610444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KEAP1	NM_012289	exon2	c.C266T	p.P89L	GCGGCCGGTGCAT	.	38.0	30.0	54.0	0.0	.	637
KIAA1211L	343990	hgsc.bcm.edu;broad.mit.edu	37	2	99439712	99439712	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_207362	exon7	c.1024delG	p.A342fs	GCTCGGCGAGCTC	.	19.0	11.0	12.0	0.0	.	.
KIAA1407	57577	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113724658	113724658	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1407	NM_020817	exon10	c.C1565T	p.T522I	CCCAGGGTCTTGT	.	198.0	69.0	210.0	2.0	.	92
KIAA1609	57707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84514214	84514214	+	Missense_Mutation	SNP	G	G	A	rs149378530	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIAA1609	NM_020947	exon7	c.C1178T	p.P393L	AGCTGCGGGCTGT	.	91.0	43.0	88.0	0.0	G|1.000;T|0.000	92
KIF1B	23095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10408742	10408742	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF1B	NM_015074	exon35	c.T3762A	p.H1254Q	TATCCATGAGAAG	.	79.0	25.0	78.0	0.0	.	93
KIF26B	55083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245530263	245530263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KIF26B	NM_018012	exon3	c.C593A	p.A198D	AGGAGGCCATCCA	.	67.0	29.0	69.0	0.0	.	25
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	39723992	39723992	+	Nonsense_Mutation	SNP	C	C	A	rs201817471	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	KRT9	NM_000226	exon7	c.G1405T	p.G469X	CAGCTCCGGAGGA	.	29.0	17.0	32.0	0.0	C|0.999;G|0.000	92
LAMA3	3909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21523852	21523852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LAMA3	NM_198129	exon69	c.C9127A	p.R3043S	AAAGGACGTCTGG	.	74.0	31.0	85.0	0.0	.	100
LHX1	3975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	35298050	35298050	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LHX1	NM_005568	exon3	c.C541T	p.R181W	AAGCGGCGGGGAC	.	39.0	14.0	28.0	0.0	.	92
LMBR1	64327	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	156619307	156619308	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LMBR1	NM_022458	exon4	c.311_312insC	p.L104fs	TGAATCAGGGAGC	.	41.0	29.0	60.0	0.0	.	90
LRFN2	57497	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	40360374	40360374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRFN2	NM_020737	exon3	c.T1678A	p.C560S	GGTTGCAGACCTT	.	51.0	21.0	52.0	0.0	.	93
LRPPRC	10128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	44162019	44162019	+	Splice_Site	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRPPRC	NM_133259	exon25	c.2505-2A>T	.	CGCCCCTTAGAAA	.	108.0	43.0	144.0	0.0	.	93
LRRC4B	94030	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51021453	51021453	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	LRRC4B	NM_001080457	exon3	c.C1517T	p.P506L	CCCCGCGGCTGCA	.	15.0	14.0	15.0	0.0	.	205
MAP3K19	80122	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	135744289	135744289	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_025052	exon7	c.A2153G	p.Q718R	TTTTTCTGAGAAA	.	303.0	119.0	312.0	2.0	.	.
MATK	4145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3783884	3783884	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MATK	NM_002378	exon6	c.C513T	p.R171R	CAGCACGCGGTAG	.	59.0	39.0	80.0	0.0	.	521
MATN3	4148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	20202976	20202976	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_002381	exon3	c.C862T	p.H288Y	CACAGTGGTGCTT	.	89.0	39.0	68.0	0.0	.	.
METTL21B	25895	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58166537	58166537	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	METTL21B	NM_015433	exon1	c.T30A	p.S10S	CGAATCTGAGTCG	.	73.0	26.0	52.0	0.0	.	514
MLL3	58508	hgsc.bcm.edu;broad.mit.edu	37	7	151927092	151927092	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MLL3	NM_170606	exon18	c.2892delC	p.G964fs	AAAACTGCCACAA	.	575.0	44.0	738.0	0.0	.	1398
MMACHC	25974	broad.mit.edu;ucsc.edu	37	1	45966041	45966041	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MMACHC	NM_015506	exon1	c.G37T	p.E13X	AAGATCGAGGACA	.	120.0	49.0	123.0	1.0	.	90
MNDA	4332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158817562	158817562	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MNDA	NM_002432	exon6	c.T1032C	p.N344N	GGATAATACAGGA	.	42.0	36.0	58.0	0.0	.	94
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59861474	59861474	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MS4A2	NM_000139	exon6	c.G575T	p.G192V	TTCTGGGACTTGG	.	89.0	38.0	113.0	0.0	.	91
MUC17	140453	hgsc.bcm.edu;bcgsc.ca	37	7	100682890	100682890	+	Silent	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.T8193C	p.S2731S	CAGTTCTTCTCCT	.	75.0	5.0	58.0	0.0	.	95
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	100682876	100682876	+	Missense_Mutation	SNP	G	G	A	rs143199514		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MUC17	NM_001040105	exon3	c.G8179A	p.A2727T	ACTTCTGCTGAAG	.	78.0	9.0	55.0	0.0	G|1.000;A|0.000	95
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	10411951	10411951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH1	NM_005963	exon16	c.G1626A	p.M542I	GGGGAACATGCAC	.	46.0	33.0	81.0	0.0	.	171
MYH8	4626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10307807	10307807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYH8	NM_002472	exon22	c.T2528A	p.L843H	CTCTTGAGGAGGG	.	257.0	169.0	411.0	1.0	.	101
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	76925722	76925722	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	MYO7A	NM_000260	exon49	c.G6629T	p.G2210V	AGCGGGGCTCCAG	.	60.0	26.0	66.0	0.0	.	138
NFATC2	4773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50071174	50071174	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NFATC2	NM_012340	exon6	c.G1760A	p.S587N	AGGCAGCTGTCTG	.	120.0	71.0	74.0	0.0	.	92
NLRP3	114548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247588229	247588229	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NLRP3	NM_183395	exon3	c.A1484G	p.Q495R	GACTGCAGAAGGC	.	40.0	28.0	21.0	0.0	.	674
NOLC1	9221	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	103917282	103917282	+	Missense_Mutation	SNP	T	T	G	rs139625185	byfrequency	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NOLC1	NM_004741	exon4	c.T411G	p.D137E	TGATGATGAGGAG	.	50.0	21.0	54.0	0.0	T|0.999;G|0.001	91
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153653014	153653014	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NPR1	NM_000906	exon2	c.C759T	p.T253T	CAGAACCCTCATG	.	97.0	82.0	88.0	0.0	.	393
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	106532406	106532406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.C26A	p.A9E	TCCCCCGCCACAG	.	25.0	17.0	23.0	0.0	.	359
NUAK1	9891	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	12	106532400	106532400	+	Missense_Mutation	SNP	T	T	G	rs201298691	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	NUAK1	NM_014840	exon1	c.A32C	p.D11A	GGGCGGTCCCCCG	.	24.0	15.0	26.0	0.0	.	359
OR14A16	284532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247978654	247978654	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR14A16	NM_001001966	exon1	c.C378A	p.H126Q	CAGAGGGTGACAT	.	60.0	46.0	88.0	0.0	.	46
OR2T8	343172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	248085221	248085221	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR2T8	NM_001005522	exon1	c.G902T	p.R301M	TGACAAGGTGTAT	.	70.0	52.0	86.0	0.0	.	68
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20215690	20215690	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A104C	p.Y35S	TTTTTTACATTGC	.	311.0	63.0	348.0	0.0	.	71
OR4Q3	441669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20216358	20216358	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR4Q3	NM_172194	exon1	c.A772T	p.I258F	GTATTCATCTATT	.	164.0	19.0	189.0	0.0	.	71
OR51M1	390059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	5410935	5410935	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR51M1	NM_001004756	exon1	c.A307T	p.S103C	TCCCATAGTATCT	.	66.0	30.0	104.0	0.0	.	68
OR5L1	219437	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55579638	55579638	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5L1	NM_001004738	exon1	c.G696T	p.E232D	TGCAGAGGGCAGG	.	85.0	34.0	96.0	1.0	.	73
OR5T2	219464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56000068	56000068	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5T2	NM_001004746	exon1	c.T594C	p.H198H	CACTGTATGTATA	.	133.0	58.0	139.0	0.0	.	70
OR5V1	81696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29323327	29323327	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR5V1	NM_030876	exon1	c.C646G	p.L216V	AGGAAAGTACGAT	.	34.0	10.0	38.0	0.0	.	72
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669510	158669510	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A933T	p.I311I	AAAAAATATCTTA	.	117.0	42.0	130.0	0.0	.	69
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158669512	158669512	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	OR6K2	NM_001005279	exon1	c.A931T	p.I311L	AAAATATCTTAGC	.	115.0	41.0	130.0	0.0	.	69
PALLD	23022	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169825044	169825044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PALLD	NM_001166108	exon15	c.C2609A	p.A870D	TTATGGCTGCAAA	.	81.0	38.0	88.0	0.0	.	94
PCDHA8	56140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140222105	140222105	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHA8	NM_031856	exon1	c.C1199T	p.T400I	TGTCCACCTTCAA	.	184.0	68.0	192.0	0.0	.	92
PCDHB8	56128	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140558291	140558291	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCDHB8	NM_019120	exon1	c.A676T	p.T226S	TCTGGCACTGCTC	.	301.0	77.0	340.0	0.0	.	131
PCF11	51585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	82895887	82895887	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCF11	NM_015885	exon16	c.C4619T	p.A1540V	GCATAGCAACACC	.	70.0	24.0	65.0	0.0	.	23
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47856895	47856895	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PCNT	NM_006031	exon40	c.A9000T	p.T3000T	CAGGACAGTTAAT	.	25.0	11.0	39.0	0.0	.	141
PDCD11	22984	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105173039	105173039	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD11	NM_014976	exon9	c.C1145A	p.A382D	CTGGGGCCACCTT	.	118.0	33.0	118.0	1.0	.	275
PDCD1	5133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	242793440	242793440	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDCD1	NM_005018	exon5	c.C637T	p.P213S	CTGAGGGGTCCTC	.	44.0	20.0	46.0	0.0	.	69
PDGFRA	5156	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	55133851	55133851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDGFRA	NM_006206	exon7	c.C1064T	p.T355I	ATCTGACTCTGAT	.	136.0	58.0	163.0	2.0	.	9497
PDXK	8566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45175644	45175644	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PDXK	NM_003681	exon10	c.A825T	p.K275N	TGCAAAAGGTACG	.	14.0	8.0	24.0	0.0	.	205
PGC	5225	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	41712472	41712472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PGC	NM_002630	exon2	c.C134T	p.T45I	TTGTGGGTCCTCA	.	50.0	14.0	58.0	1.0	.	90
PIGO	84720	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35094331	35094331	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGO	NM_001201484	exon4	c.T537G	p.D179E	GGTATCATCTCCC	.	43.0	23.0	42.0	0.0	.	290
PIGQ	9091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	625870	625870	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PIGQ	NM_148920	exon3	c.G721A	p.G241R	TTCCTCGGGAGCA	.	18.0	14.0	33.0	0.0	.	226
PLOD3	8985	bcgsc.ca;mdanderson.org	37	7	100855190	100855190	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PLOD3	NM_001084	exon11	c.G1169T	p.S390I	TCCAGGCTGAAGT	.	59.0	43.0	33.0	1.0	.	92
PNLIPRP1	5407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118360697	118360697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PNLIPRP1	NM_006229	exon10	c.G1047T	p.E349D	AGGAGAGGCTAGC	.	57.0	22.0	55.0	0.0	.	154
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127379537	127379537	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PODXL2	NM_015720	exon3	c.T666A	p.H222Q	CAGGCATGAAGAC	.	85.0	26.0	67.0	0.0	.	91
POF1B	79983	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	84561303	84561303	+	Silent	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POF1B	NM_024921	exon12	c.T1201C	p.L401L	CTTCCAATGCCTG	.	87.0	67.0	113.0	0.0	.	130
POTEG	404785	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	19553734	19553734	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	POTEG	NM_001005356	exon1	c.C318A	p.F106L	CTGCTTCCCCTGC	.	487.0	78.0	531.0	1.0	.	1
PPIL2	23759	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	22025285	22025298	+	Frame_Shift_Del	DEL	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GTCTCTCTCTGCAG	GTCTCTCTCTGCAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PPIL2	NM_014337	exon4	c.129_141del	p.43_47del	TTTTCAGTCTCTC	.	140.0	10.0	209.0	0.0	.	92
PRDM2	7799	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	14105627	14105627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRDM2	NM_015866	exon8	c.C1337T	p.S446L	ATGATTCGAGTCC	.	93.0	8.0	102.0	1.0	.	116
PRKCE	5581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	45879477	45879477	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRKCE	NM_005400	exon1	c.G238T	p.E80X	AAGATCGAGCTGG	.	30.0	15.0	27.0	0.0	.	1019
PRPF31	26121	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54626868	54626868	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRPF31	NM_015629	exon6	c.T456A	p.N152K	GAACAATGAGAAC	.	81.0	44.0	74.0	0.0	.	91
PRR14L	253143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32112941	32112941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRR14L	NM_173566	exon4	c.G884A	p.G295E	TCCTTCCCATTGT	.	181.0	39.0	201.0	0.0	.	91
PRSS57	400668	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	687104	687104	+	Missense_Mutation	SNP	G	G	A	rs201377261		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PRSS57	NM_214710	exon4	c.C466T	p.R156W	GGCACCGTGTCCC	.	59.0	38.0	83.0	0.0	G|0.999;A|0.000	90
PTPRR	5801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	71054875	71054875	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTPRR	NM_002849	exon12	c.A1611C	p.Q537H	GCTTCCTTGCTGA	.	62.0	20.0	84.0	0.0	.	652
PTX4	390667	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	1537527	1537527	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PTX4	NM_001013658	exon2	c.C571A	p.P191T	CCTCAGGCTGGGT	.	55.0	34.0	71.0	0.0	.	90
PYROXD1	79912	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	21609022	21609022	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	PYROXD1	NM_024854	exon7	c.C743A	p.T248K	AAGGAACAAAAGA	.	111.0	39.0	157.0	1.0	.	23
RAB19	401409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	140111745	140111745	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RAB19	NM_001008749	exon3	c.C273G	p.H91Q	TGCCCACGCAGCC	.	46.0	21.0	39.0	0.0	.	22
RABL6	55684	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	139722950	139722951	+	Frame_Shift_Ins	INS	-	-	AG	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001173989	exon4	c.318_319insAG	p.K106fs	AGGAAAATGCAAA	.	69.0	46.0	27.0	0.0	.	.
RASSF10	644943	hgsc.bcm.edu;bcgsc.ca	37	11	13031752	13031752	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001080521	exon1	c.629delG	p.C210fs	CGTCCTGCTCTTC	.	90.0	28.0	68.0	0.0	.	.
RCSD1	92241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167666934	167666934	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RCSD1	NM_052862	exon6	c.G1073T	p.G358V	TGAAGGGCGGAGA	.	29.0	27.0	37.0	0.0	.	517
RGMB	285704	hgsc.bcm.edu;broad.mit.edu	37	5	98109681	98109682	+	Frame_Shift_Ins	INS	-	-	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001012761	exon3	c.30_31insC	p.A10fs	AAGCGCGCCCCCC	.	28.0	14.0	9.0	0.0	.	.
RIMBP2	23504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130929724	130929724	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIMBP2	NM_015347	exon7	c.T621A	p.D207E	ATCCTCATCCATG	.	33.0	25.0	63.0	0.0	.	142
RIMBP3	85376	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	20458090	20458090	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_015672	exon1	c.C3212A	p.T1071N	GACATAGTTCCCC	.	408.0	94.0	466.0	1.0	.	.
RIPK3	11035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24807239	24807239	+	Silent	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RIPK3	NM_006871	exon6	c.C672A	p.T224T	TGGTTCGGTTGGC	.	80.0	36.0	77.0	0.0	.	946
RTTN	25914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	67802444	67802444	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	RTTN	NM_173630	exon22	c.A2861G	p.D954G	ACTTCATCAAATA	.	193.0	42.0	171.0	0.0	.	141
SEMA3E	9723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	83014738	83014738	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA3E	NM_012431	exon16	c.G1747T	p.D583Y	TCTTATCCAAAGC	.	255.0	63.0	213.0	0.0	.	93
SEMA6D	80031	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48063978	48063978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SEMA6D	NM_153618	exon19	c.A3218G	p.Y1073C	ACACATACTAGGC	.	86.0	26.0	67.0	1.0	.	138
SENP2	59343	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	185318578	185318578	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SENP2	NM_021627	exon5	c.384delT	p.S128fs	AATAAGTGACTAT	.	155.0	56.0	137.0	0.0	.	658
SERINC4	619189	broad.mit.edu;bcgsc.ca	37	15	44087217	44087217	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SERINC4	NM_001258031	exon12	c.1538delA	p.N513fs	TATTTGTTATCTG	.	14.0	9.0	22.0	0.0	.	90
SHISA3	152573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42400220	42400220	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SHISA3	NM_001080505	exon1	c.C147T	p.D49D	CTTCGACACGCTG	.	75.0	21.0	53.0	0.0	.	70
SIN3A	25942	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75705361	75705361	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SIN3A	NM_001145358	exon5	c.C499T	p.R167C	ACACACGACTAAT	.	123.0	41.0	108.0	0.0	.	230
SLC45A3	85414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205628667	205628667	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC45A3	NM_033102	exon5	c.C1357A	p.L453M	GGAGCAGGCCACT	.	76.0	60.0	73.0	0.0	.	98
SLC4A3	6508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220500505	220500505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC4A3	NM_201574	exon14	c.C2164T	p.H722Y	TACCCGCACTACC	.	66.0	31.0	63.0	0.0	.	157
SLC6A13	6540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	335639	335639	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A13	NM_016615	exon9	c.T977G	p.F326C	GCCACAAAGCTGG	.	31.0	11.0	47.0	0.0	.	90
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1422073	1422073	+	Missense_Mutation	SNP	C	C	T	rs6345	bycluster;by1000genomes	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A3	NM_001044	exon5	c.G710A	p.R237Q	TGCCACCGCGGAG	.	42.0	19.0	40.0	0.0	C|0.001;G|0.998	157
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1422086	1422086	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC6A3	NM_001044	exon5	c.C697A	p.L233M	GCCCCAGGTCGTC	.	40.0	15.0	38.0	0.0	.	157
SLC9A4	389015	hgsc.bcm.edu;broad.mit.edu	37	2	103121886	103121912	+	In_Frame_Del	DEL	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TCATCTGCTTCACCCTGGCCTTCTGCC	TCATCTGCTTCACCCTGGCCTTCTGCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLC9A4	NM_001011552	exon4	c.1154_1180del	p.385_394del	GGGCCTTCATCTG	.	41.0	10.0	47.0	0.0	.	92
SLITRK3	22865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164908256	164908256	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SLITRK3	NM_014926	exon2	c.C363T	p.F121F	ACCATTGAAAGCT	.	80.0	34.0	80.0	0.0	.	100
SPEG	10290	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	220354472	220354472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon36	c.C8732A	p.P2911Q	CACCACCAGCCCC	.	89.0	38.0	117.0	1.0	.	383
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	220326629	220326631	+	In_Frame_Del	DEL	CCC	CCC	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	CCC	CCC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon7	c.2466_2468del	p.822_823del	CAGCAGCCCCATC	.	65.0	24.0	60.0	0.0	.	383
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	2	220348586	220348586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPEG	NM_005876	exon30	c.G6401T	p.G2134V	CCCAGGGTGAGGC	.	11.0	5.0	13.0	0.0	.	383
SPIRE1	56907	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12454401	12454401	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPIRE1	NM_001128626	exon13	c.G1720A	p.E574K	CCAGCTCTGCCTT	.	174.0	63.0	183.0	0.0	.	90
SPTAN1	6709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131369944	131369944	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SPTAN1	NM_003127	exon32	c.G4108T	p.D1370Y	GCCAAGGATGTCA	.	56.0	15.0	98.0	0.0	.	158
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52553354	52553354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAB1	NM_015136	exon49	c.C5109A	p.F1703L	GCACTTCATTGAC	.	74.0	50.0	99.0	0.0	.	139
STAC3	246329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57640644	57640644	+	Silent	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	STAC3	NM_145064	exon6	c.C546T	p.R182R	CCCAGTGCGCAGG	.	125.0	40.0	122.0	0.0	.	93
SUPT20HL1	100130302	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	24383090	24383090	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001136234	exon1	c.C2213A	p.A738D	GGCAGGCCTTCCC	.	124.0	96.0	113.0	0.0	.	.
SYT17	51760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19234475	19234475	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	SYT17	NM_016524	exon6	c.A1060T	p.S354C	GATGTGAGCCAAG	.	89.0	33.0	91.0	0.0	.	69
TCTE1	202500	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	44254246	44254246	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TCTE1	NM_182539	exon3	c.C301G	p.L101V	CCGGGAGCATCTG	.	73.0	17.0	87.0	0.0	.	94
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	123540198	123540198	+	Silent	SNP	C	C	T	rs148101479		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_001163278	exon26	c.G5124A	p.T1708T	AGTTGCCGTCAAG	.	76.0	59.0	83.0	0.0	C|1.000;T|0.000	.
TFEB	7942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	41658400	41658400	+	Splice_Site	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TFEB	NM_007162	exon5	c.468+1G>A	.	CACTCACCTCCCT	.	19.0	8.0	27.0	0.0	.	659
TG	7038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	133935646	133935646	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TG	NM_003235	exon22	c.C4592G	p.A1531G	ATCGAGCCAGCCA	.	101.0	51.0	65.0	0.0	.	145
TKTL2	84076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	164394657	164394657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TKTL2	NM_032136	exon1	c.G230A	p.G77E	GCATGTCCCCTGG	.	129.0	47.0	148.0	0.0	.	95
TMC6	11322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76120809	76120809	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TMC6	NM_001127198	exon8	c.G687A	p.P229P	GCGCCACGGCATC	.	89.0	26.0	50.0	0.0	.	90
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119936632	119936632	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNFRSF11B	NM_002546	exon5	c.T1187G	p.V396G	ATTTTTACTGATT	.	151.0	55.0	111.0	0.0	.	651
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	195610026	195610026	+	Splice_Site	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TNK2	NM_005781	exon6	c.609+2T>A	.	GTACTCACCATCT	.	12.0	6.0	23.0	0.0	.	957
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	7577064	7577064	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	TP53,NS,carcinoma,+1	TP53	NM_000546	exon8	c.A874T	p.K292X	CCCCTTTCTTGCG	.	35.0	17.0	60.0	0.0	.	70225
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	30298592	30298593	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AG	AG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRIM39	NM_172016	exon4	c.488_489del	p.163_163del	TGGAACAGAAGCT	.	70.0	21.0	72.0	0.0	.	161
TRUB2	26995	broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	131072114	131072114	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TRUB2	NM_015679	exon8	c.G711A	p.K237K	AACCAACTTCCGC	.	80.0	17.0	108.0	1.0	.	91
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179472259	179472259	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon277	c.T53156A	p.V17719E	TCTATTACAACAC	.	165.0	57.0	152.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179501228	179501228	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TTN	NM_001267550	exon225	c.G41226T	p.K13742N	GTGCAGCTTTCTG	.	148.0	54.0	146.0	0.0	.	636
TUBB8	347688	broad.mit.edu;mdanderson.org	37	10	94664	94664	+	Silent	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBB8	NM_177987	exon3	c.T168A	p.G56G	CCTGCCACCTGCG	.	38.0	8.0	34.0	1.0	.	69
TUBGCP6	85378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	22	50656529	50656539	+	Frame_Shift_Del	DEL	TTCTCCGTGAG	TTCTCCGTGAG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TTCTCCGTGAG	TTCTCCGTGAG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	TUBGCP6	NM_020461	exon24	c.5176_5186del	p.1726_1729del	GCCGCCTTCTCCG	.	34.0	12.0	37.0	0.0	.	93
UBD	10537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29524084	29524084	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	UBD	NM_006398	exon2	c.C71G	p.A24G	GGGTTGGCATCAA	.	69.0	23.0	86.0	0.0	.	90
USH1C	10083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	17544442	17544442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	USH1C	NM_153676	exon12	c.G908T	p.R303L	GCCAGCCGCTCCC	.	69.0	28.0	61.0	0.0	.	91
VAC14	55697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	70778459	70778459	+	Silent	SNP	C	C	A	rs145571853	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VAC14	NM_018052	exon13	c.G1395T	p.V465V	TGCCAGCACCTCC	.	64.0	16.0	54.0	0.0	C|1.000;T|0.000	227
VPREB3	29802	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24096504	24096504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	VPREB3	NM_013378	exon1	c.C47T	p.S16L	TCACCTGACAGGA	.	74.0	24.0	100.0	0.0	.	90
WDR96	80217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105944803	105944803	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WDR96	NM_025145	exon16	c.T2112A	p.D704E	GCCATCATCTCTC	.	65.0	12.0	83.0	0.0	.	95
WT1	7490	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	32414292	32414292	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	WT1	NM_024424	exon8	c.C1259G	p.P420R	TGGTATGGTTTCT	.	81.0	28.0	90.0	0.0	.	6891
XIRP1	165904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39228092	39228092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP1	NM_001198621	exon2	c.C2845T	p.P949S	CAGCCGGGGGCTC	.	53.0	38.0	63.0	0.0	.	158
XIRP2	129446	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	168110643	168110643	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_001199143	exon10	c.C1377A	p.C459X	GTCCTGCTTCCGA	.	311.0	106.0	290.0	1.0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	168102891	168102891	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.4989delA	p.I1663fs	AGCAATAAAAAAC	.	217.0	95.0	208.0	0.0	.	104
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	168105997	168105997	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XIRP2	NM_152381	exon9	c.8095delC	p.P2699fs	CACTTGCCCCAAA	.	128.0	43.0	137.0	0.0	.	104
XKR4	114786	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	56436755	56436757	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	AGG	AGG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	XKR4	NM_052898	exon3	c.1922_1924del	p.641_642del	TTATTCAGGAGCG	.	41.0	11.0	33.0	0.0	.	92
ZBTB48	3104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6642352	6642352	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZBTB48	NM_005341	exon3	c.C925T	p.H309Y	AAAGTCCACAACA	.	63.0	27.0	84.0	0.0	.	514
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	99999574	99999574	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZCWPW1	NM_017984	exon17	c.C1562G	p.A521G	GGAGGAGCTGTGG	.	268.0	17.0	142.0	0.0	.	90
ZMYM1	79830	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35563033	35563033	+	Silent	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM1	NM_024772	exon4	c.T285A	p.I95I	AAAAATTCTCCAG	.	231.0	92.0	243.0	1.0	.	90
ZMYM2	7750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20657109	20657109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZMYM2	NM_001190964	exon24	c.A3757G	p.T1253A	CCTTTAACGATGG	.	229.0	100.0	249.0	0.0	.	685
ZNF107	51427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	64166839	64166839	+	Nonsense_Mutation	SNP	G	G	T	rs201422104	alternate_allele	TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF107	NM_016220	exon7	c.G157T	p.E53X	GTGGATGAGTGTA	.	208.0	67.0	176.0	0.0	.	69
ZNF250	58500	broad.mit.edu;bcgsc.ca	37	8	146108000	146108000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	NM_021061	exon6	c.G583A	p.G195R	TCTCTCCACTAGG	.	538.0	40.0	146.0	1.0	.	.
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52376841	52376841	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A402T	p.R134S	AACACATCTATGG	.	60.0	37.0	135.0	0.0	.	91
ZNF577	84765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52376925	52376925	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF577	NM_032679	exon7	c.A318T	p.K106N	AGAATCTTTTCCT	.	49.0	33.0	93.0	0.0	.	91
ZNF667	63934	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56952664	56952664	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF667	NM_022103	exon5	c.G1700T	p.G567V	TCTGAGCCACTGC	.	128.0	72.0	108.0	1.0	.	91
ZNF670	93474	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247201663	247201663	+	Silent	SNP	C	C	T	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF670	NM_033213	exon4	c.G258A	p.Q86Q	TGAATCCTGGCTG	.	69.0	61.0	73.0	1.0	.	91
ZNF862	643641	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149558298	149558298	+	Silent	SNP	C	C	A	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF862	NM_001099220	exon7	c.C2049A	p.I683I	GGACATCCCCTTC	.	74.0	19.0	77.0	1.0	.	69
ZNF98	148198	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	22574550	22574550	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	ZNF98	NM_001098626	exon4	c.G1487C	p.G496A	GCTTTGCCACATT	.	330.0	85.0	257.0	0.0	.	24
MS4A2	2206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	59861471	59861472	+	Missense_Mutation	DNP	TG	TG	AT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	TG	TG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.L191H	CCATTCTGGGACT	.	91.0	39.0	112.0	0.0	.	.
IRAK4	51135	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	44165082	44165083	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.W74F	TTGACTGGGGCAC	.	114.0	47.0	143.0	0.0	.	.
LINGO2	158038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	27949553	27949554	+	Missense_Mutation	DNP	GG	GG	TT	novel		TCGA-RC-A6M6-01A-11D-A32G-10	TCGA-RC-A6M6-10A-01D-A32G-10	GG	GG	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	01e01f50-bbe6-4594-a0ce-609338dc94ef	607d33ab-246a-4caa-94da-4af6591ea60e	.	.	.	.	.	p.L373M	ACTGCAGGGTGGG	.	33.0	22.0	51.0	0.0	.	.
