Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
A1CF	29974	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52603787	52603787	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	A1CF	NM_001198820	exon5	c.A219T	p.R73R	AAGGTCTCGGGGA	.	133.0	55.0	185.0	0.0	.	68
ABCA1	19	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	107620923	107620923	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA1	NM_005502	exon7	c.A600T	p.S200S	CTCTTCTGATTTT	.	81.0	70.0	139.0	0.0	.	1016
ABCA12	26154	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	215813373	215813373	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA12	NM_173076	exon47	c.C7051A	p.H2351N	ACAAATGTTCTTC	.	143.0	68.0	147.0	1.0	.	99
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	48559635	48559635	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon53	c.13798-2A>T	.	CTGTGCAGAATTT	.	39.0	10.0	62.0	0.0	.	521
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48314790	48314790	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon17	c.G5527T	p.V1843F	TGCAATGTCCATG	.	66.0	27.0	84.0	0.0	.	521
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48412076	48412076	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon33	c.T11115C	p.F3705F	AAGTTTTGTTAAT	.	53.0	21.0	48.0	0.0	.	521
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48431709	48431709	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon38	c.A11846T	p.K3949M	GGACCAAGAAGGA	.	126.0	53.0	127.0	0.0	.	521
ABCA13	154664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48528889	48528889	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA13	NM_152701	exon48	c.C13239A	p.N4413K	TCTAAACAACCTT	.	169.0	62.0	205.0	0.0	.	521
ABCA3	21	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2348543	2348543	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA3	NM_001089	exon16	c.1742-2A>G	.	GAGACCTGGGGCC	.	74.0	31.0	62.0	0.0	.	1015
ABCA7	10347	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	1042061	1042061	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCA7	NM_019112	exon5	c.303-2A>T	.	GTCCCCAGGGTCT	.	13.0	4.0	19.0	0.0	.	98
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20683101	20683101	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCB5	NM_001163941	exon7	c.G524C	p.S175T	AAATCAGTGATGG	.	96.0	11.0	102.0	0.0	.	158
ABCB5	340273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20778743	20778743	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCB5	NM_001163941	exon24	c.G3005T	p.S1002I	GCCGCAGTCAAGA	.	70.0	25.0	54.0	0.0	.	158
ABCD2	225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	40010969	40010969	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABCD2	NM_005164	exon2	c.T941A	p.V314E	ATTTCTACCTATA	.	71.0	34.0	71.0	0.0	.	95
ABHD2	11057	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89694906	89694906	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ABHD2	NM_152924	exon4	c.195-2A>G	.	TTCTTTAGATACA	.	64.0	32.0	81.0	0.0	.	227
ACAN	176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	89388804	89388804	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ACAN	NM_001135	exon7	c.A1120G	p.T374A	GTCCAGACAGTGA	.	75.0	36.0	92.0	0.0	.	25
ACSM3	6296	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	20788756	20788756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ACSM3	NM_005622	exon4	c.A492T	p.Q164H	ACTACAATCTTCA	.	91.0	46.0	107.0	0.0	.	91
ADAD1	132612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123336766	123336766	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAD1	NM_139243	exon11	c.T1482A	p.T494T	GATCACTGAAAGG	.	82.0	36.0	98.0	0.0	.	90
ADAD2	161931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	84230327	84230327	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAD2	NM_139174	exon10	c.T1847C	p.V616A	GGGCTGTGGGGAA	.	26.0	24.0	58.0	0.0	.	68
ADAM17	6868	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	9668050	9668050	+	Missense_Mutation	SNP	T	T	G	rs34431503	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM17	NM_003183	exon5	c.A484C	p.K162Q	TTCTTTTGTCTTT	.	75.0	41.0	83.0	0.0	T|0.996;C|0.004	659
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	207346034	207346034	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon3	c.509+2T>C	.	AACAAGTGAGTAT	.	241.0	112.0	238.0	0.0	.	228
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207424750	207424750	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon11	c.T1077A	p.I359I	TCAGATTGACATC	.	60.0	21.0	87.0	0.0	.	228
ADAM23	8745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207436495	207436495	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM23	NM_003812	exon17	c.G1611T	p.G537G	CAACGGGGCTCAC	.	50.0	18.0	45.0	0.0	.	228
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175897487	175897487	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.A811C	p.K271Q	TATTGCAAGTGGA	.	117.0	50.0	152.0	0.0	.	729
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175897603	175897603	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.A927T	p.P309P	TACACCACACCGT	.	155.0	56.0	243.0	0.0	.	729
ADAM29	11086	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175899050	175899050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM29	NM_001130703	exon4	c.C2374A	p.P792T	TTGACGCCTTCCC	.	108.0	28.0	174.0	0.0	.	729
ADAM7	8756	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	24346837	24346837	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAM7	NM_003817	exon12	c.C1257T	p.G419G	CTGTGGCCCTGCT	.	32.0	24.0	53.0	0.0	.	230
ADAMTS2	9509	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	178566986	178566986	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS2	NM_014244	exon11	c.G1680C	p.R560R	GCCGTCCCGTTTG	.	22.0	10.0	59.0	0.0	.	228
ADAMTS3	9508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	73414452	73414452	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS3	NM_014243	exon3	c.A247G	p.N83D	TGATGTTAAAGAA	.	92.0	42.0	131.0	0.0	.	651
ADAMTS5	11096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	28306845	28306845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS5	NM_007038	exon4	c.A1629T	p.G543G	CCCCTTTCCACAA	.	83.0	38.0	114.0	0.0	.	229
ADAMTS8	11095	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130278692	130278692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTS8	NM_007037	exon7	c.A1894T	p.R632W	CGCTCCTCCCCCG	.	49.0	20.0	74.0	0.0	.	226
ADAMTSL1	92949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	18892464	18892464	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTSL1	NM_001040272	exon26	c.A4721G	p.K1574R	GTCAAAAGCTGAA	.	66.0	27.0	61.0	0.0	.	230
ADAMTSL4	54507	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150526448	150526448	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAMTSL4	NM_019032	exon6	c.C981A	p.R327R	GCCCCGCCTGGAG	.	102.0	27.0	44.0	0.0	.	92
ADAR	103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	154573591	154573591	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADAR	NM_015840	exon2	c.A1527G	p.L509L	ATATTCTAACAGC	.	204.0	65.0	83.0	0.0	.	157
ADC	113451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33557811	33557811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADC	NM_052998	exon6	c.A440T	p.H147L	AGAGCCACCCCAG	.	166.0	69.0	219.0	0.0	.	92
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45632453	45632453	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY1	NM_021116	exon2	c.G735T	p.Q245H	CCTGCAGGCCCGG	.	124.0	62.0	111.0	0.0	.	95
ADCY1	107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	45717819	45717819	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY1	NM_021116	exon10	c.C1855T	p.L619L	CTCATCCTGGCTG	.	114.0	48.0	105.0	0.0	.	95
ADCY2	108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7817092	7817092	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY2	NM_020546	exon23	c.G2997C	p.V999V	GCGAGTGGGTACG	.	104.0	42.0	169.0	0.0	.	97
ADCY4	196883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	24792119	24792119	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADCY4	NM_001198592	exon19	c.T2333A	p.L778X	GAGTCCAAGGGGC	.	68.0	41.0	55.0	0.0	.	93
ADRA1D	146	broad.mit.edu;mdanderson.org	37	20	4202598	4202598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRA1D	NM_000678	exon2	c.T1291G	p.W431G	CACGCCAGAGAGG	.	19.0	6.0	13.0	0.0	.	522
ADRA1D	146	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4228555	4228555	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRA1D	NM_000678	exon1	c.G1050T	p.L350L	GATGGCCAGAGTC	.	165.0	70.0	218.0	1.0	.	522
ADRB2	154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148206948	148206948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ADRB2	NM_000024	exon1	c.A554G	p.Y185C	ACTGCTATGCCAA	.	51.0	19.0	53.0	0.0	.	523
AFF2	2334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	147967466	147967466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AFF2	NM_002025	exon8	c.A1310T	p.E437V	ACCTTGAGCCTGT	.	48.0	43.0	55.0	0.0	.	135
AGAP2	116986	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58121778	58121778	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGAP2	NM_001122772	exon15	c.A2708T	p.Q903L	ATGGCCTGGACCC	.	59.0	26.0	49.0	0.0	.	716
AGAP7	653268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	51465326	51465326	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001077685	exon7	c.A1130G	p.K377R	TGTTTCTTTTTAT	.	73.0	36.0	96.0	0.0	.	.
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86702252	86702252	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152336	exon4	c.A345C	p.A115A	CCAAGCAATCAGG	.	81.0	41.0	86.0	0.0	.	.
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	86823010	86823010	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152336	exon15	c.T2078A	p.L693H	CAGCCCTCATGGT	.	110.0	54.0	106.0	0.0	.	.
AGBL1	123624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	87097675	87097675	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152336	exon20	c.C2763A	p.S921S	AGCTTCCACGGCC	.	63.0	30.0	77.0	0.0	.	.
AGFG1	3267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228398301	228398301	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AGFG1	NM_001135187	exon8	c.A923T	p.H308L	TTGCTCATTTTGA	.	86.0	39.0	109.0	0.0	.	228
AGO1	26523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36383941	36383941	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_012199	exon17	c.A2182G	p.I728V	GGTAACATCCCAG	.	108.0	47.0	135.0	0.0	.	.
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105413692	105413692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK2	NM_138420	exon7	c.A8096T	p.Q2699L	GGGGGCTGAATGC	.	120.0	49.0	214.0	0.0	.	47
AHNAK2	113146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	105420987	105420987	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK2	NM_138420	exon7	c.A801G	p.I267M	GCTCTTTATGGAT	.	24.0	19.0	48.0	0.0	.	47
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62285505	62285505	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A16384G	p.K5462E	TCCCTTTCACTTT	.	82.0	41.0	86.0	0.0	.	109
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62288328	62288328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A13561G	p.M4521V	CACTCATGGAGAT	.	98.0	29.0	111.0	0.0	.	109
AHNAK	79026	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62289734	62289734	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AHNAK	NM_001620	exon5	c.A12155G	p.H4052R	GGGCCATGAACAT	.	70.0	34.0	81.0	0.0	.	109
AIM2	9447	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	159038418	159038418	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AIM2	NM_004833	exon3	c.A336T	p.A112A	GATGGCTGCAGAT	.	162.0	108.0	84.0	0.0	.	93
AKAP13	11214	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	15	86286977	86286977	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP13	NM_006738	exon36	c.C8325A	p.T2775T	CTCTACCCGCCTG	.	101.0	15.0	138.0	0.0	.	258
AKAP1	8165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	55187406	55187406	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP1	NM_001242902	exon4	c.G1735T	p.D579Y	AGCATGGATTCCG	.	77.0	27.0	77.0	0.0	.	227
AKAP9	10142	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	91724335	91724335	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKAP9	NM_005751	exon40	c.9579-2A>T	.	TGACTTAGGTTGG	.	60.0	29.0	85.0	0.0	.	755
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117106039	117106039	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKNA	NM_030767	exon19	c.A3706G	p.N1236D	TGCCATTGCCTTT	.	63.0	44.0	113.0	0.0	.	94
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	117118383	117118383	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AKNA	NM_030767	exon14	c.A2880T	p.A960A	CACAGATGCAGCA	.	30.0	21.0	75.0	0.0	.	94
ALG10B	144245	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	38710709	38710709	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALG10B	NM_001013620	exon1	c.A14G	p.E5G	AGCTAGAGGGTTA	.	64.0	27.0	61.0	1.0	.	93
ALPK1	80216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	113303587	113303587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALPK1	NM_001102406	exon4	c.A155T	p.Q52L	TGATCCAGGAGGC	.	215.0	105.0	243.0	1.0	.	337
ALS2CR8	79800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	203834660	203834660	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALS2CR8	NM_024744	exon11	c.A972G	p.V324V	AAAGGTACAGAAG	.	200.0	108.0	256.0	0.0	.	136
ALX4	60529	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	44297157	44297157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ALX4	NM_021926	exon2	c.T518A	p.V173E	ATCCCCACAGTGT	.	52.0	26.0	45.0	0.0	.	90
AMPD1	270	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115218238	115218238	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AMPD1	NM_000036	exon12	c.A1691T	p.Q564L	CACTCCTGGGGCT	.	58.0	31.0	50.0	0.0	.	293
AMPH	273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	38500915	38500915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AMPH	NM_139316	exon11	c.G985T	p.V329F	CTGGAACAAAGTT	.	75.0	37.0	73.0	0.0	.	95
ANK1	286	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	41519015	41519015	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK1	NM_000037	exon42	c.A5612T	p.K1871M	GCCCGCTTCACTA	.	44.0	16.0	44.0	0.0	.	716
ANK2	287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	114278661	114278661	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK2	NM_001148	exon38	c.A8887G	p.T2963A	TCTGTTACCATCA	.	87.0	39.0	114.0	0.0	.	583
ANK3	288	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61956318	61956318	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK3	NM_020987	exon15	c.A1755C	p.L585L	TTTCTGTAGCAGG	.	41.0	19.0	48.0	1.0	.	107
ANK3	288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	61829458	61829458	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANK3	NM_020987	exon37	c.T11181G	p.S3727S	GGATGCAGAAATT	.	66.0	24.0	101.0	0.0	.	107
ANKRD11	29123	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89348451	89348451	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD11	NM_001256183	exon9	c.A4499C	p.Q1500P	GGCTTCTGCTCGT	.	11.0	10.0	36.0	0.0	.	139
ANKRD11	29123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89350278	89350278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD11	NM_001256183	exon9	c.A2672G	p.D891G	CGGCTGTCCCGCC	.	41.0	38.0	79.0	0.0	.	139
ANKRD24	170961	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4207906	4207906	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANKRD24	NM_133475	exon10	c.G773A	p.G258E	TGGCGGGGGACAA	.	82.0	38.0	88.0	0.0	.	68
ANKUB1	389161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	149485426	149485426	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001144960	exon5	c.A1023G	p.A341A	AACTTTTGCCCCA	.	44.0	21.0	44.0	0.0	.	.
ANLN	54443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	36436005	36436005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANLN	NM_018685	exon2	c.A149T	p.Q50L	GTAACCAGCAGCC	.	143.0	69.0	187.0	0.0	.	517
ANO9	338440	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	430368	430368	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANO9	NM_001012302	exon8	c.T575A	p.V192D	AGCCAGACGAAGT	.	97.0	85.0	233.0	1.0	.	227
ANTXR1	84168	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	69304560	69304560	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANTXR1	NM_032208	exon8	c.T582C	p.S194S	GGACAGTAAGGAT	.	63.0	26.0	78.0	0.0	.	94
ANTXR2	118429	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	80899212	80899212	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ANTXR2	NM_001145794	exon15	c.A1296T	p.R432R	TTTGGGTCGAGGT	.	127.0	45.0	171.0	1.0	.	23
AOC3	8639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41004309	41004309	+	Missense_Mutation	SNP	T	T	A	rs438287	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AOC3	NM_003734	exon1	c.T949A	p.Y317N	CAGTTCTATCCCC	.	55.0	26.0	42.0	0.0	T|0.720;C|0.280	516
AOX1	316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	201469552	201469552	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AOX1	NM_001159	exon9	c.A803G	p.N268S	TGGGAAACACCTC	.	71.0	29.0	102.0	0.0	.	96
AP4E1	23431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	51289653	51289653	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AP4E1	NM_007347	exon18	c.A2477G	p.Y826C	TGGCATATGAAGA	.	88.0	31.0	74.0	0.0	.	90
APC2	10297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	1460853	1460853	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APC2	NM_005883	exon12	c.C1518G	p.H506Q	GCTCCACCAGGTA	.	81.0	11.0	109.0	0.0	.	290
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	21231036	21231036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOB	NM_000384	exon26	c.A8704T	p.S2902C	CCTGACTAGAGAA	.	107.0	49.0	106.0	0.0	.	175
APOBEC3D	140564	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39421150	39421150	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOBEC3D	NM_152426	exon3	c.A286C	p.R96R	GCTAACAGGCGCT	.	77.0	28.0	97.0	0.0	.	180
APOD	347	broad.mit.edu;bcgsc.ca	37	3	195306268	195306268	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APOD	NM_001647	exon2	c.C65A	p.A22E	TGAAATGCTTGTC	.	94.0	31.0	95.0	2.0	.	516
APP	351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	27277345	27277345	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APP	NM_000484	exon15	c.A1954G	p.T652A	GTCGAGTGGTCAG	.	98.0	34.0	104.0	0.0	.	91
APPL2	55198	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	105605024	105605024	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	APPL2	NM_018171	exon5	c.A357T	p.R119R	CTTTTCTCGGAAT	.	56.0	28.0	84.0	1.0	.	91
AQP10	89872	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	154294415	154294415	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AQP10	NM_080429	exon2	c.A112T	p.T38S	CTCCTCACCCAAG	.	271.0	42.0	128.0	0.0	.	90
AR	367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	66937427	66937427	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	AR	NM_000044	exon5	c.A2281C	p.R761R	AACTCCAGGATGC	.	58.0	52.0	58.0	0.0	.	661
ARHGAP22	58504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	49687696	49687696	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP22	NM_001256025	exon4	c.G452T	p.W151L	GGGGCCCAGATGA	.	117.0	56.0	119.0	0.0	.	228
ARHGAP24	83478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	86916311	86916311	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP24	NM_001025616	exon9	c.A1504T	p.S502C	AACATGAGCTGGC	.	58.0	21.0	76.0	1.0	.	227
ARHGAP31	57514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119133814	119133814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP31	NM_020754	exon12	c.T3038A	p.L1013Q	CTGGCCTGAAAGG	.	65.0	23.0	65.0	0.0	.	92
ARHGAP33	115703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36276186	36276186	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGAP33	NM_052948	exon18	c.A1817T	p.K606M	CTCGAAAGAAGCC	.	92.0	43.0	98.0	0.0	.	229
ARHGAP35	2909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	47425269	47425269	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_004491	exon1	c.C3337T	p.Q1113X	AGCACCCAAGGCA	.	101.0	43.0	154.0	0.0	.	.
ARHGEF12	23365	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	120349051	120349051	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF12	NM_015313	exon37	c.A3719T	p.H1240L	ATTCACACCTGCC	.	60.0	25.0	73.0	0.0	.	661
ARHGEF17	9828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	73066691	73066691	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF17	NM_014786	exon4	c.A3567G	p.L1189L	GTTCCTAGAGGTA	.	53.0	20.0	57.0	0.0	.	227
ARHGEF4	50649	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	131674130	131674130	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARHGEF4	.	.	.	.	GCAGGGCCGGCAG	.	31.0	10.0	47.0	1.0	.	292
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	157528624	157528624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARID1B	NM_020732	exon20	c.A6349T	p.R2117W	TTAGTTAGGTACG	.	47.0	21.0	56.0	0.0	.	154
ARID5B	84159	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	63760062	63760062	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARID5B	NM_032199	exon4	c.A715G	p.S239G	AACGAGAGTATAT	.	71.0	29.0	91.0	0.0	.	94
ARL13B	200894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	93754239	93754239	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARL13B	NM_182896	exon4	c.C445G	p.L149V	CTATCTCTGGAAA	.	156.0	67.0	153.0	0.0	.	91
ARMC5	79798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31477974	31477974	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMC5	NM_001105247	exon6	c.A2572T	p.I858F	GGCCGCATCCACC	.	47.0	20.0	50.0	0.0	.	24
ARMCX1	51309	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	100808409	100808409	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMCX1	NM_016608	exon4	c.A496G	p.S166G	AGGGCAAGTGGAA	.	76.0	60.0	95.0	1.0	.	134
ARMCX3	51566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	100880234	100880234	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARMCX3	NM_016607	exon5	c.A265T	p.R89X	GGAACCAGAGCTA	.	30.0	29.0	37.0	0.0	.	131
ARPC1A	10552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	98946489	98946489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ARPC1A	NM_006409	exon5	c.A407G	p.H136R	GCAAGCACATTAA	.	158.0	84.0	155.0	0.0	.	91
ARRDC5	645432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4902726	4902726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001080523	exon1	c.C154A	p.P52T	CTATGGGGTCCAC	.	120.0	62.0	139.0	0.0	.	.
ART4	420	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	14993397	14993397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ART4	NM_021071	exon2	c.A835G	p.N279D	GACAGTTATATGT	.	49.0	21.0	57.0	0.0	.	90
ASAH2	56624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	52005188	52005188	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASAH2	NM_001143974	exon2	c.A154T	p.T52S	TTTGGGTGGTTGA	.	83.0	35.0	105.0	0.0	.	90
ASAP1	50807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	131130809	131130809	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASAP1	NM_018482	exon19	c.A1720T	p.R574W	AATCCCTGGATTT	.	87.0	36.0	112.0	0.0	.	95
ASCC3	10973	broad.mit.edu;mdanderson.org	37	6	101173567	101173567	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASCC3	NM_006828	exon11	c.A1750C	p.T584P	CTGGTGTGGTCAC	.	86.0	11.0	89.0	1.0	.	96
ASH1L	55870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155451023	155451023	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASH1L	NM_018489	exon3	c.A1638G	p.P546P	ACTGAATGGGGAT	.	133.0	26.0	54.0	0.0	.	234
ASIC1	41	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	50474966	50474966	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001095	exon10	c.1377+2T>A	.	ACGAGGTAAGCGG	.	69.0	33.0	65.0	0.0	.	.
ASIC1	41	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50473727	50473727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001256830	exon6	c.T1196C	p.M399T	GTGAAATGCCTTG	.	123.0	49.0	155.0	0.0	.	.
ASTL	431705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96795631	96795631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASTL	NM_001002036	exon8	c.C806T	p.A269V	TCCGAGGCACTCA	.	117.0	54.0	130.0	0.0	.	90
ASTN1	460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177001594	177001594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ASTN1	NM_004319	exon3	c.C863T	p.P288L	CCACCTGGTGTGA	.	68.0	23.0	32.0	0.0	.	319
ATG16L2	89849	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	72538273	72538273	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATG16L2	NM_033388	exon14	c.G1407T	p.V469V	TGACGTGGTGTGT	.	68.0	24.0	90.0	0.0	.	90
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108175446	108175446	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATM	NM_000051	exon37	c.T5541C	p.H1847H	GATTCATGATATT	.	47.0	20.0	70.0	0.0	.	3419
ATOH1	474	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94750985	94750985	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATOH1	NM_005172	exon1	c.C908A	p.T303K	CCCTGACAGCGAT	.	57.0	28.0	38.0	0.0	.	90
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193128796	193128796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP13A4	NM_032279	exon28	c.T3272C	p.I1091T	TCTGGTATATCAG	.	342.0	148.0	382.0	1.0	.	92
ATP13A4	84239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193232491	193232491	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP13A4	NM_032279	exon2	c.C230A	p.T77K	ACCGTTGTCCTCA	.	72.0	31.0	77.0	0.0	.	92
ATP1A2	477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160097597	160097597	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A2	NM_000702	exon8	c.T1004A	p.L335Q	GGCTTCTGGCCAC	.	107.0	77.0	56.0	0.0	.	518
ATP1A3	478	broad.mit.edu;mdanderson.org	37	19	42471493	42471493	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A3	NM_001256213	exon23	c.2955-1G>T	.	CTGGGCCTGCAGA	.	21.0	8.0	21.0	0.0	.	92
ATP1A4	480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160144010	160144010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP1A4	NM_144699	exon14	c.C2101A	p.P701T	ACCTCCCCTCAGC	.	329.0	236.0	196.0	0.0	.	94
ATP2B2	491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	10370618	10370618	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP2B2	NM_001001331	exon23	c.A3612T	p.S1204S	GAGGGATGACGGC	.	98.0	46.0	139.0	0.0	.	95
ATP2C1	27032	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	130714897	130714897	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP2C1	NM_001199181	exon22	c.G2170T	p.E724X	GCAATCGAAGAGG	.	23.0	10.0	30.0	0.0	.	91
ATP6V1A	523	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113524316	113524316	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP6V1A	NM_001690	exon14	c.A1705G	p.I569V	TGGTCCATTATTC	.	176.0	74.0	182.0	0.0	.	93
ATP8A1	10396	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42446619	42446619	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP8A1	NM_006095	exon32	c.A2991G	p.G997G	CTCCAATCCAGCT	.	58.0	26.0	95.0	0.0	.	92
ATP8A2	51761	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	13	26349095	26349095	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ATP8A2,arm,malignant_melanoma,-2	ATP8A2	NM_016529	exon27	c.G2677T	p.E893X	ATTATTGAGGTAA	.	38.0	12.0	49.0	1.0	.	138
ATP8B1	5205	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	55338765	55338765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATP8B1	NM_005603	exon17	c.A1867C	p.T623P	TAACAGTGTCAGC	.	130.0	54.0	154.0	0.0	.	587
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142253962	142253962	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATR	NM_001184	exon21	c.A3905T	p.H1302L	AGAGCATGAATAC	.	106.0	55.0	99.0	0.0	.	1139
ATR	545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142281191	142281191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATR	NM_001184	exon4	c.G1053T	p.Q351H	GAAATACTGCAGT	.	190.0	97.0	224.0	0.0	.	1139
ATRX	546	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	76938245	76938245	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ATRX	NM_000489	exon9	c.A2503T	p.R835X	TGGTTCTGGCAGC	.	53.0	52.0	54.0	0.0	.	248
B3GALTL	145173	broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	31789221	31789221	+	Missense_Mutation	SNP	A	A	G	rs112402968		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GALTL	NM_194318	exon2	c.A104G	p.E35G	AGAAAGAGGTCAA	.	28.0	15.0	53.0	1.0	A|0.500;G|0.500	92
B3GAT3	26229	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62384649	62384649	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GAT3	NM_012200	exon3	c.A428T	p.Q143L	AGCCGCTGGGCTT	.	50.0	27.0	57.0	0.0	.	90
B3GNT3	10331	broad.mit.edu;bcgsc.ca	37	19	17919063	17919063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B3GNT3	NM_014256	exon2	c.A447T	p.T149T	GGGCACAGCCTCC	.	72.0	31.0	88.0	1.0	.	91
B4GALNT3	283358	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	668524	668524	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon19	c.G2825C	p.G942A	GGATTGGGGGCAT	.	168.0	72.0	173.0	1.0	.	92
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	660161	660161	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon11	c.T1071C	p.D357D	GGTGGATGGGCTT	.	65.0	29.0	114.0	0.0	.	92
B4GALNT3	283358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	662644	662644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	B4GALNT3	NM_173593	exon14	c.A1555G	p.S519G	AAACCCAGCCCTG	.	51.0	23.0	78.0	0.0	.	92
BACH2	60468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90661011	90661011	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BACH2	NM_021813	exon7	c.A814T	p.R272W	GCCCCCTGGCAAG	.	44.0	24.0	55.0	0.0	.	231
BAI3	577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	69949085	69949085	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BAI3	NM_001704	exon20	c.C2781T	p.L927L	TATCCTCATACTG	.	89.0	35.0	98.0	0.0	.	1148
BBS5	129880	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	170354147	170354147	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BBS5	NM_152384	exon8	c.A629G	p.K210R	CAATAAAGATTAG	.	262.0	13.0	304.0	0.0	.	90
BBS7	55212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	122756329	122756329	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BBS7	NM_018190	exon14	c.A1481G	p.H494R	CTTTGATGGAGTG	.	95.0	29.0	140.0	0.0	.	91
BCAN	63827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	156622305	156622305	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BCAN	NM_198427	exon8	c.A1563T	p.P521P	ATCACCACTTCCT	.	125.0	23.0	84.0	0.0	.	516
BCLAF1	9774	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	136599666	136599666	+	Missense_Mutation	SNP	C	C	T	rs147857152	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BCLAF1	NM_014739	exon4	c.G353A	p.R118K	ACGGATCTTCTTT	.	139.0	33.0	129.0	0.0	C|1.000;G|0.000	228
BEND3	57673	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	107390413	107390413	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BEND3	NM_001080450	exon5	c.A1982G	p.H661R	GGCACGTGGACCT	.	46.0	21.0	58.0	0.0	.	71
BFSP2	8419	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133169265	133169265	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BFSP2	NM_003571	exon4	c.T848C	p.V283A	GAGATGTTGAAAA	.	48.0	19.0	56.0	0.0	.	90
BICC1	80114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	60553242	60553242	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BICC1	NM_001080512	exon9	c.1048-2A>G	.	TTTTCTAGGGTTG	.	96.0	33.0	92.0	0.0	.	72
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32726807	32726807	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC6	NM_016252	exon47	c.A9059C	p.H3020P	CTAAACATGAAAA	.	88.0	28.0	94.0	0.0	.	233
BIRC6	57448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32750644	32750644	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC6	NM_016252	exon59	c.A11869C	p.N3957H	GCTGCCAACAAAA	.	112.0	37.0	109.0	0.0	.	233
BIRC7	79444	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	61867542	61867542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC7	NM_139317	exon1	c.C94A	p.P32T	TGTGGACCCCGCT	.	48.0	44.0	73.0	1.0	.	659
BIRC8	112401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	53793261	53793261	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BIRC8	NM_033341	exon1	c.T367A	p.F123I	AATCAAATCCCAT	.	93.0	39.0	118.0	0.0	.	227
BLNK	29760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	97976426	97976426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BLNK	NM_001114094	exon7	c.C590T	p.S197L	GGAGGTGAACTGC	.	68.0	49.0	156.0	0.0	.	92
BMP7	655	broad.mit.edu;mdanderson.org	37	20	55841042	55841042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BMP7	NM_001719	exon1	c.T137C	p.L46P	CTGCGGAGGCGCC	.	30.0	10.0	30.0	0.0	.	187
BMPER	168667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	33976943	33976943	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BMPER	NM_133468	exon4	c.T262C	p.S88P	GTGCTGTCCCGAG	.	60.0	24.0	106.0	0.0	.	92
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	16437127	16437127	+	Silent	SNP	G	G	T	rs183551262	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BNC2	NM_017637	exon6	c.C1065A	p.P355P	AAGGCTGGGTTCC	.	110.0	38.0	110.0	0.0	G|0.999;A|0.000	92
BNIPL	149428	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151018276	151018276	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BNIPL	NM_138278	exon8	c.A855G	p.L285L	CAGGCTACGGAAA	.	153.0	54.0	68.0	0.0	.	227
BPI	671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36956045	36956045	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BPI	NM_001725	exon11	c.T1229A	p.L410H	GAGAGCTCAAGCT	.	67.0	40.0	64.0	1.0	.	94
BPIFA1	51297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31827623	31827623	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_016583	exon4	c.A335G	p.D112G	TCACTGACCCCCA	.	104.0	34.0	104.0	0.0	.	.
BPIFB2	80341	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	31604907	31604907	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025227	exon7	c.T576C	p.I192I	CTTAATTGGTAAG	.	39.0	10.0	54.0	0.0	.	.
BPIFC	254240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32828474	32828474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_174932	exon10	c.G1035T	p.E345D	GGGAGGCTCTGTG	.	99.0	46.0	111.0	0.0	.	.
BPTF	2186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	65907751	65907751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BPTF	NM_004459	exon13	c.A4129G	p.S1377G	TCCAAGAGTGCTT	.	122.0	49.0	126.0	0.0	.	94
BRD9	65980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	878542	878542	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRD9	NM_023924	exon11	c.A1199T	p.D400V	TTCAAGTCGCCAA	.	59.0	13.0	72.0	0.0	.	90
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	92442752	92442752	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRDT	NM_001242806	exon6	c.T783C	p.S261S	AGATTCTCAGCAA	.	202.0	78.0	238.0	0.0	.	374
BRIP1	83990	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	59793426	59793426	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRIP1	NM_032043	exon18	c.2380-2A>T	.	TCAACCTAATAAT	.	39.0	16.0	54.0	0.0	.	660
BRWD3	254065	broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	79999579	79999579	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRWD3	NM_153252	exon8	c.A765G	p.A255A	AACGGGTGCACAA	.	220.0	16.0	260.0	1.0	.	134
BRWD3	254065	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	79979304	79979304	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BRWD3	NM_153252	exon16	c.A1593G	p.T531T	AGAATCTGTGCAG	.	47.0	45.0	52.0	0.0	.	134
BSG	682	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	578005	578005	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BSG	NM_001728	exon2	c.A299T	p.E100V	TCGTGGAGGAGGA	.	49.0	10.0	57.0	1.0	.	90
BTBD1	53339	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	83718868	83718868	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BTBD1	NM_025238	exon3	c.A621G	p.T207T	ATCCATTGTGCTT	.	60.0	31.0	79.0	0.0	.	91
BUB1B	701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40491906	40491906	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BUB1B	NM_001211	exon10	c.A1379T	p.Q460L	CTACTCAGCAAGA	.	285.0	122.0	320.0	0.0	.	1509
BVES	11149	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	105572512	105572512	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	BVES	NM_001199563	exon5	c.A558T	p.R186R	ATGTCCTCGATAG	.	30.0	10.0	45.0	0.0	.	90
C10orf107	219621	broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	63441009	63441009	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf107	NM_173554	exon2	c.C9A	p.F3L	GGATTTCTCTATT	.	47.0	6.0	54.0	0.0	.	90
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	50532101	50532101	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf71	NM_001135196	exon3	c.A1511T	p.K504M	ACCTCAAGGACGT	.	58.0	32.0	85.0	0.0	.	90
C10orf71	118461	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50530956	50530956	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C10orf71	NM_001135196	exon3	c.C366T	p.V122V	GCCAGTCCAGAGG	.	127.0	62.0	128.0	0.0	.	90
C11orf65	160140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	108253873	108253873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C11orf65	NM_152587	exon9	c.A817C	p.I273L	TATATATGTTTTT	.	64.0	23.0	78.0	0.0	.	91
C14orf105	55195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	57960276	57960276	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C14orf105	NM_018168	exon1	c.A158G	p.Q53R	TTATTCTGGTCCT	.	47.0	20.0	43.0	0.0	.	90
C15orf39	56905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75499850	75499850	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C15orf39	NM_015492	exon2	c.A1461T	p.P487P	TCTTCCACAGAAG	.	43.0	18.0	66.0	0.0	.	90
C16orf54	283897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29755668	29755668	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_175900	exon2	c.A605T	p.Q202L	CGTGGCTGGAGGC	.	99.0	52.0	93.0	0.0	.	.
C16orf89	146556	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	5112500	5112500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C16orf89	NM_001098514	exon2	c.T284A	p.L95Q	TCCCCCAGCATCC	.	60.0	30.0	61.0	0.0	.	92
C17orf104	284071	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	42750732	42750732	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C17orf104	NM_001145080	exon7	c.2458-2A>C	.	TCCCTCAGGTTGT	.	63.0	24.0	49.0	0.0	.	22
C18orf8	29919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	21104400	21104400	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C18orf8	NM_013326	exon12	c.A1014G	p.S338S	TTCTTCATCTTGG	.	55.0	21.0	64.0	0.0	.	91
C19orf21	126353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	757065	757065	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.C119T	p.A40V	CCGAGGCCAGCGG	.	72.0	38.0	77.0	1.0	.	91
C19orf21	126353	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758002	758002	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.G1056T	p.Q352H	CGTGCAGCGGGAC	.	13.0	6.0	22.0	0.0	.	91
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758534	758534	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.G1588T	p.V530L	TGGGAGGTGGCTG	.	77.0	33.0	86.0	0.0	.	91
C19orf21	126353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	758601	758601	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C19orf21	NM_173481	exon2	c.A1655T	p.E552V	AGAGGGAGAGTGT	.	129.0	58.0	153.0	0.0	.	91
C1orf106	55765	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	200877954	200877954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf106	NM_018265	exon7	c.C968T	p.P323L	CAGGACCTGAGGC	.	157.0	13.0	291.0	0.0	.	93
C1orf173	127254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	75065565	75065565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf173	NM_001002912	exon11	c.A1540G	p.N514D	CTTCATTAGATTT	.	110.0	54.0	123.0	0.0	.	94
C1orf94	84970	broad.mit.edu;ucsc.edu;mdanderson.org	37	1	34662932	34662932	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1orf94	NM_001134734	exon2	c.G427T	p.E143X	TCTGGGGAGCTGG	.	72.0	31.0	108.0	1.0	.	90
C1QTNF7	114905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15444181	15444181	+	Missense_Mutation	SNP	C	C	A	rs140339349	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C1QTNF7	NM_001135170	exon3	c.C649A	p.L217M	ATCGGACTGGTAC	.	72.0	21.0	93.0	0.0	C|1.000;A|0.000	90
C20orf141	128653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	2796253	2796253	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C20orf141	NM_080739	exon2	c.T330A	p.G110G	TGAAGGTCCTGGA	.	77.0	30.0	87.0	0.0	.	90
C21orf58	54058	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47735441	47735441	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C21orf58	NM_058180	exon4	c.G391A	p.D131N	GGGCATCGTCCGG	.	35.0	28.0	77.0	0.0	.	91
C2CD5	9847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	22606848	22606848	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_014802	exon24	c.G2853A	p.E951E	TGGATTCTCCATG	.	92.0	40.0	124.0	0.0	.	.
C2orf71	388939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	29296302	29296302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C2orf71	NM_001029883	exon1	c.A826T	p.S276C	GCTTGCTGACTGT	.	53.0	22.0	60.0	0.0	.	91
C2orf80	389073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	209047758	209047758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C2orf80	NM_001099334	exon4	c.T137C	p.L46S	ATGGCCAAGTCAT	.	77.0	33.0	103.0	0.0	.	69
C3	718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6710810	6710810	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3	NM_000064	exon13	c.A1526G	p.E509G	CCGGGCTCTCGCA	.	100.0	44.0	85.0	0.0	.	95
C3orf20	84077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14813588	14813588	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3orf20	NM_032137	exon16	c.T2510C	p.V837A	ACTCTGTCCTGAG	.	66.0	27.0	63.0	0.0	.	94
C3P1	388503	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10169609	10169609	+	RNA	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C3P1	.	.	.	.	CAAGCCAACGACT	.	105.0	47.0	90.0	0.0	.	90
C4orf26	152816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	76489571	76489571	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C4orf26	NM_178497	exon2	c.T315G	p.Y105X	ATTTTATTGGCCA	.	206.0	77.0	280.0	0.0	.	90
C6	729	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	41143008	41143008	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6	NM_001115131	exon18	c.A2724T	p.T908T	GTTCAATGTTTTC	.	82.0	34.0	89.0	0.0	.	95
C6orf165	154313	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	88128124	88128124	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf165	NM_001031743	exon7	c.A830T	p.Q277L	TCCTTCAGATCAT	.	61.0	28.0	71.0	0.0	.	90
C6orf170	221322	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121563461	121563461	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf170	NM_152730	exon18	c.A2043T	p.L681F	ATCATCTAACAAA	.	63.0	29.0	59.0	1.0	.	92
C6orf170	221322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	121447529	121447529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C6orf170	NM_152730	exon26	c.A2978G	p.Y993C	CCTGTATACTCCA	.	48.0	27.0	62.0	0.0	.	92
C7orf63	79846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89917620	89917620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C7orf63	NM_001039706	exon15	c.G1729T	p.G577C	CAGAGTGGCTTAG	.	94.0	34.0	116.0	0.0	.	91
C7orf63	79846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	89936396	89936396	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C7orf63	NM_001039706	exon20	c.A2447G	p.Q816R	ATGAACAAAAAGT	.	135.0	54.0	133.0	0.0	.	91
C8orf4	56892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	40011185	40011185	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C8orf4	NM_020130	exon1	c.A134C	p.Q45P	CAGACCAAGAATC	.	70.0	39.0	102.0	0.0	.	69
C9orf153	389766	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	88842778	88842778	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf153	NM_001276368	exon4	c.T234A	p.P78P	GATAACAGGTTGG	.	99.0	43.0	97.0	0.0	.	90
C9orf3	84909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	97522798	97522798	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf3	NM_001193331	exon2	c.A733T	p.R245W	GCTATCAGGATAT	.	60.0	22.0	54.0	0.0	.	91
C9orf96	169436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136270407	136270407	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	C9orf96	NM_153710	exon18	c.T1905C	p.S635S	CAGTAGTATGAAG	.	12.0	10.0	23.0	0.0	.	334
CA12	771	broad.mit.edu;mdanderson.org	37	15	63673907	63673907	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CA12	NM_206925	exon1	c.A13C	p.S5R	GCAGGCTGCGCCG	.	30.0	8.0	33.0	1.0	.	515
CA9	768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35674105	35674105	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CA9	NM_001216	exon1	c.G149T	p.G50V	CCTTGGGAGGAGG	.	75.0	38.0	58.0	0.0	.	95
CAB39	51719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231655654	231655654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAB39	NM_001130849	exon3	c.A182T	p.E61V	AAAAAGAGCCTCA	.	152.0	60.0	178.0	0.0	.	226
CABLES1	91768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	20774494	20774494	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CABLES1	NM_001100619	exon3	c.A1000G	p.R334G	GATACCAGGAATG	.	53.0	29.0	62.0	0.0	.	522
CABP1	9478	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	121098923	121098923	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CABP1	NM_001033677	exon5	c.C989A	p.A330D	GAGAGGCTATGAG	.	96.0	31.0	107.0	1.0	.	90
CACHD1	57685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	65142576	65142576	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACHD1	NM_020925	exon22	c.2823-2A>G	.	CTGCACAGAAACC	.	202.0	90.0	197.0	0.0	.	92
CACNA1A	773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13411364	13411364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1A	NM_001127221	exon18	c.T2282A	p.V761E	ACTTACACAGCTA	.	74.0	23.0	87.0	0.0	.	67
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181680158	181680158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1E	NM_001205293	exon8	c.A1124T	p.Q375L	AGCAGCAGATTGA	.	75.0	29.0	43.0	0.0	.	95
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	181767600	181767600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1E	NM_001205293	exon48	c.A6572T	p.E2191V	GCGAGGAGGGCTC	.	82.0	22.0	54.0	0.0	.	95
CACNA1H	8912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1270071	1270071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA1H	NM_021098	exon35	c.A6139G	p.R2047G	CCGGTGAGGCCGG	.	84.0	39.0	109.0	0.0	.	67
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	2027475	2027475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA2D4	NM_172364	exon1	c.G165T	p.W55C	CAGCAGCCACAGG	.	47.0	20.0	71.0	0.0	.	23
CACNA2D4	93589	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	1987485	1987485	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNA2D4	NM_172364	exon16	c.C1715G	p.P572R	ACCAGGGGCCGGA	.	61.0	31.0	82.0	0.0	.	23
CACNG3	10368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	24373102	24373102	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNG3	NM_006539	exon4	c.T866A	p.L289Q	CTTTTCTACAGTT	.	94.0	40.0	96.0	0.0	.	90
CACNG7	59284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54444786	54444786	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CACNG7	NM_031896	exon4	c.A487C	p.R163R	ATGAACAGGCCCA	.	55.0	30.0	67.0	0.0	.	91
CADM1	23705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	115080321	115080321	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADM1	NM_014333	exon8	c.A1051G	p.T351A	TGGTGGTGGTGGT	.	56.0	33.0	53.0	0.0	.	92
CADM2	253559	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	85961527	85961527	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADM2	NM_001167675	exon6	c.A534T	p.V178V	AGATGTAAAATAT	.	254.0	118.0	224.0	0.0	.	228
CADPS	8618	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	62631427	62631427	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CADPS	NM_003716	exon6	c.A1295G	p.Q432R	TCAGTCTGTAGTT	.	86.0	31.0	102.0	0.0	.	281
CALD1	800	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	134613624	134613624	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CALD1	NM_033157	exon4	c.A191T	p.D64V	TGACCGACCAGGT	.	85.0	40.0	95.0	0.0	.	226
CALHM3	119395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	105236257	105236257	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CALHM3	NM_001129742	exon2	c.T337A	p.W113R	GGATCCAGACCAG	.	56.0	39.0	140.0	0.0	.	67
CAMK2A	815	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	149602599	149602599	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAMK2A	NM_015981	exon18	c.G1419A	p.W473X	GATCTGCCATTTG	.	39.0	20.0	61.0	0.0	.	333
CAND1	55832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	67703830	67703830	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAND1	NM_018448	exon12	c.A3175T	p.R1059X	AAAGTTAGAAAGG	.	112.0	44.0	121.0	0.0	.	516
CAND2	23066	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12848860	12848860	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAND2	NM_001162499	exon3	c.A268C	p.T90P	GTGGACACCCTGT	.	147.0	66.0	160.0	2.0	.	72
CAPN13	92291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	30966296	30966296	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPN13	NM_144575	exon13	c.A1398T	p.S466S	CTCCGCTGATTTT	.	104.0	44.0	132.0	0.0	.	136
CAPN8	388743	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	223717520	223717520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	GGTCTGCTGCACC	.	17.0	16.0	41.0	0.0	.	.
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75692738	75692738	+	Missense_Mutation	SNP	C	C	T	rs200022333		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon11	c.G920A	p.R307H	GCATCACGTCCAT	.	71.0	27.0	91.0	0.0	C|0.999;T|0.000	92
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75716791	75716791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon5	c.G311T	p.C104F	GTTTGACATGGTG	.	278.0	95.0	282.0	0.0	.	92
CAPS2	84698	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75720286	75720286	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CAPS2	NM_032606	exon2	c.G50C	p.G17A	TGAGTTCCTGTGT	.	53.0	14.0	69.0	0.0	.	92
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2987406	2987406	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CARD11	NM_032415	exon3	c.T23G	p.M8R	TCATCCATCTCTG	.	103.0	45.0	102.0	0.0	.	870
CARD11	84433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	2983944	2983944	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CARD11	NM_032415	exon5	c.A586T	p.K196X	TCACCTTGACCAG	.	99.0	45.0	127.0	0.0	.	870
CASQ2	845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116244009	116244009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CASQ2	NM_001232	exon11	c.T1053A	p.D351E	TGGAAGATCGTCA	.	97.0	39.0	105.0	0.0	.	91
CCBE1	147372	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	57122130	57122130	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCBE1	NM_133459	exon6	c.A607T	p.K203X	ACTCCTTGCATGT	.	64.0	27.0	76.0	0.0	.	93
CCDC102B	79839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	66678301	66678301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC102B	NM_001093729	exon9	c.T1394C	p.V465A	TACGAGTGGAAGA	.	135.0	50.0	159.0	0.0	.	93
CCDC103	388389	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42979908	42979908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC103	NM_001258395	exon4	c.T452A	p.L151Q	TGGCACTGGCTGA	.	58.0	23.0	82.0	1.0	.	69
CCDC113	29070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58293762	58293762	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC113	NM_014157	exon5	c.A551T	p.N184I	AGGATAATATGAA	.	89.0	81.0	190.0	0.0	.	90
CCDC13	152206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42775068	42775068	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC13	NM_144719	exon11	c.A1405T	p.S469C	GGCCACTGGACCC	.	31.0	15.0	29.0	0.0	.	91
CCDC136	64753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128449649	128449649	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC136	NM_022742	exon11	c.A1751T	p.E584V	AGGAAGAGCTGCA	.	118.0	60.0	149.0	0.0	.	24
CCDC140	151278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	223168828	223168828	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC140	NM_153038	exon2	c.A207T	p.P69P	GGGGCCAAGCCCG	.	231.0	116.0	281.0	0.0	.	68
CCDC166	100130274	broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144789934	144789934	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001162914	exon1	c.T346G	p.Y116D	CGTGGTAGAGCGA	.	12.0	9.0	17.0	0.0	.	.
CCDC168	643677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103383046	103383046	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001146197	exon4	c.T20001C	p.I6667I	TGTATCAATGGAA	.	60.0	55.0	79.0	0.0	.	.
CCDC168	643677	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	13	103392604	103392604	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001146197	exon4	c.T10443C	p.H3481H	AGTTTTATGGTAT	.	54.0	29.0	49.0	0.0	.	.
CCDC174	51244	ucsc.edu;bcgsc.ca;mdanderson.org	37	3	14711539	14711539	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_016474	exon10	c.A1051T	p.R351W	CAGGAGAGGAAGG	.	258.0	124.0	286.0	2.0	.	.
CCDC176	80127	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	74514721	74514721	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025057	exon7	c.C736T	p.L246L	GACGCTCTACAAA	.	165.0	38.0	246.0	1.0	.	.
CCDC176	80127	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	74514746	74514757	+	In_Frame_Del	DEL	AAGAGAGTCATA	AAGAGAGTCATA	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	AAGAGAGTCATA	AAGAGAGTCATA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025057	exon7	c.761_772del	p.254_258del	AGTTGCAAGAGAG	.	156.0	24.0	231.0	0.0	.	.
CCDC178	374864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	30672732	30672732	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001105528	exon20	c.A2381T	p.K794M	TGTTTCTTATCTC	.	200.0	104.0	254.0	0.0	.	.
CCDC27	148870	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	3683112	3683112	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC27	NM_152492	exon9	c.G1466A	p.R489Q	ACCTCCGAGAAGA	.	109.0	9.0	122.0	1.0	.	91
CCDC27	148870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3680278	3680278	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC27	NM_152492	exon8	c.G1330T	p.A444S	GTGATTGCGTCTT	.	177.0	24.0	278.0	0.0	.	91
CCDC50	152137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	191078935	191078935	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC50	NM_174908	exon4	c.A317G	p.E106G	TTCAGGAGAAGAA	.	384.0	157.0	442.0	0.0	.	90
CCDC78	124093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	774367	774367	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC78	NM_001031737	exon9	c.T908A	p.L303Q	TCCACCAGCCTCT	.	41.0	20.0	37.0	0.0	.	91
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112357721	112357721	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC80	NM_199511	exon2	c.T1032A	p.P344P	TGAGGGAGGTTGG	.	29.0	9.0	45.0	0.0	.	92
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86103710	86103710	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC81	NM_001156474	exon4	c.A426T	p.Q142H	GAAACAAAATGTG	.	106.0	38.0	130.0	0.0	.	91
CCDC81	60494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	86108753	86108753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC81	NM_001156474	exon6	c.A726T	p.K242N	GTTAAAAGACCAG	.	40.0	16.0	45.0	0.0	.	91
CCDC90A	63933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13791091	13791091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC90A	NM_001031713	exon9	c.A1030G	p.I344V	TAAATATAGACCC	.	218.0	92.0	190.0	0.0	.	90
CCDC94	55702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	4249223	4249223	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCDC94	NM_018074	exon2	c.25-2A>G	.	CCCTGCAGAAATA	.	72.0	34.0	86.0	0.0	.	90
CCL11	6356	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32612882	32612882	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL11	NM_002986	exon1	c.C55A	p.P19T	TTCAGCCCCCAGG	.	43.0	21.0	44.0	0.0	.	90
CCL18	6362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	34398401	34398401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL18	NM_002988	exon3	c.A270T	p.X90C	TGCCTGAGGGGCC	.	130.0	72.0	146.0	0.0	.	514
CCL2	6347	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	32583296	32583296	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCL2	NM_002982	exon2	c.A132G	p.S44S	GATCTCAGTGCAG	.	36.0	12.0	49.0	0.0	.	91
CCNE2	9134	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95906153	95906153	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCNE2	NM_057749	exon4	c.A131T	p.E44V	ACCTCCTCTCTTC	.	118.0	46.0	151.0	0.0	.	414
CCR6	1235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	167550197	167550197	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR6	NM_004367	exon3	c.C479A	p.T160K	CCAGAACACTACC	.	58.0	18.0	78.0	0.0	.	227
CCR7	1236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38721654	38721654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR7	NM_001838	exon1	c.T8A	p.L3Q	TCACCCAGGTCCA	.	58.0	15.0	71.0	0.0	.	659
CCR8	1237	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	39374403	39374403	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CCR8	NM_005201	exon2	c.G581T	p.W194L	TGAAGTGGAAGAT	.	60.0	25.0	63.0	0.0	.	659
CCSER1	401145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	91549369	91549369	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145065	exon6	c.A1918G	p.R640G	ATGAAGAGAGTTC	.	117.0	64.0	146.0	0.0	.	.
CCSER2	54462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	86259681	86259681	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018999	exon10	c.G2376A	p.G792G	CCAGGGGATCCCA	.	56.0	24.0	87.0	0.0	.	.
CD276	80381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73994758	73994758	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD276	NM_025240	exon3	c.A242G	p.E81G	TTGCTGAGGGCCA	.	58.0	28.0	67.0	0.0	.	91
CD38	952	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	15850179	15850179	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD38	NM_001775	exon8	c.A857T	p.Q286L	TTCTTCAGTGTGT	.	49.0	15.0	63.0	0.0	.	92
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803106	157803106	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD5L	NM_005894	exon5	c.T915G	p.V305V	GCGGCCAACCCCA	.	250.0	174.0	146.0	0.0	.	91
CD5L	922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157803162	157803162	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD5L	NM_005894	exon5	c.T859A	p.C287S	TCCCACAGCCCAG	.	227.0	160.0	144.0	0.0	.	91
CD6	923	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	60739381	60739381	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD6	NM_006725	exon1	c.T44A	p.L15H	CAGCCCTCTCAGG	.	23.0	7.0	39.0	1.0	.	227
CD86	942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121828150	121828150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CD86	NM_175862	exon5	c.T742C	p.W248R	ATTCCTTGGATTA	.	93.0	38.0	106.0	0.0	.	92
CDC14B	8555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	99286009	99286009	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC14B	NM_001077181	exon11	c.836-2A>G	.	GCCAGCTAGGAAA	.	153.0	134.0	188.0	0.0	.	228
CDC40	51362	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	110522886	110522886	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC40	NM_015891	exon3	c.A402G	p.T134T	TGCAACATATGGT	.	52.0	26.0	75.0	0.0	.	90
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64601242	64601242	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDC42BPG	NM_017525	exon22	c.A2533T	p.R845W	CCGGCCTCAGATC	.	27.0	11.0	42.0	0.0	.	528
CDH15	1013	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	89246648	89246648	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH15	NM_004933	exon3	c.G242C	p.S81T	TCTACAGCATCCA	.	37.0	27.0	84.0	0.0	.	523
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	18	59166656	59166656	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH20	NM_031891	exon2	c.G484T	p.E162X	GACAATGAGCCCA	.	101.0	54.0	113.0	0.0	.	155
CDH23	64072	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	73269837	73269837	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH23	NM_001171931	exon4	c.146-2A>T	.	TACTCCAGGTTCT	.	41.0	18.0	59.0	0.0	.	563
CDH26	60437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58563998	58563998	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH26	NM_177980	exon9	c.A1063G	p.I355V	CTCATCATTGTCG	.	70.0	29.0	64.0	0.0	.	93
CDH5	1003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66431975	66431975	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH5	NM_001795	exon9	c.A1451T	p.Q484L	CCTACCAGCCCAA	.	51.0	43.0	128.0	0.0	.	525
CDH6	1004	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	31313451	31313451	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDH6	NM_004932	exon8	c.T1280C	p.M427T	CAGATATGGACAG	.	123.0	43.0	152.0	1.0	.	159
CDK15	65061	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	202672587	202672587	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDK15	NM_001261435	exon3	c.A280T	p.S94C	AGGAAGAGCCTCC	.	53.0	27.0	54.0	0.0	.	664
CDK5R2	8941	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	219825484	219825484	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDK5R2	NM_003936	exon1	c.942delC	p.D314fs	CGCCGACCCCCAC	.	77.0	32.0	71.0	0.0	.	227
CDKL3	51265	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133644327	133644327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDKL3	NM_001113575	exon8	c.A973T	p.R325W	CTTTCCTGAGTTC	.	47.0	26.0	57.0	0.0	.	389
CDX2	1045	broad.mit.edu;mdanderson.org	37	13	28542995	28542995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CDX2	NM_001265	exon1	c.C149A	p.A50E	GCCGCTGCAGCTG	.	13.0	7.0	11.0	0.0	.	658
CEACAM6	4680	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	42265920	42265920	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEACAM6	NM_002483	exon4	c.C747G	p.Y249X	CAATTACCGTCCA	.	110.0	44.0	130.0	0.0	.	91
CEBPE	1053	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	23587945	23587945	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEBPE	NM_001805	exon1	c.C356A	p.A119E	TTCACCGCCACAG	.	42.0	18.0	39.0	0.0	.	92
CENPF	1063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	214818921	214818921	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CENPF	NM_016343	exon13	c.A6008T	p.Q2003L	GCATTCAGGTGGC	.	73.0	60.0	134.0	0.0	.	567
CENPV	201161	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16253335	16253335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CENPV	NM_181716	exon2	c.A419G	p.Q140R	AGGCCCTGGTATT	.	132.0	111.0	302.0	1.0	.	90
CEP250	11190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	34065725	34065725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP250	NM_007186	exon17	c.C1893G	p.S631R	GTGCAGCAGAATG	.	97.0	48.0	118.0	0.0	.	27
CEP290	80184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	88513944	88513944	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP290	NM_025114	exon15	c.A1469G	p.E490G	TTCAATTCAAGTT	.	275.0	119.0	311.0	0.0	.	96
CEP55	55165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	95259889	95259889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP55	NM_001127182	exon2	c.A81T	p.L27F	TACATTAGAAAAA	.	47.0	38.0	147.0	1.0	.	90
CEP63	80254	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	134265095	134265095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CEP63	NM_001042383	exon8	c.G894T	p.K298N	AGTAAAGGCAACT	.	424.0	210.0	403.0	0.0	.	493
CER1	9350	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14722169	14722169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CER1	NM_005454	exon1	c.A502T	p.S168C	CCTGGCTGAAGGG	.	67.0	31.0	72.0	0.0	.	226
CERKL	375298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	182413408	182413408	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CERKL	NM_001030311	exon8	c.A1150T	p.K384X	CTTACTTAAGTTT	.	191.0	82.0	226.0	0.0	.	228
CFH	3075	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	196714988	196714988	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CFH	NM_000186	exon21	c.3352delG	p.G1118fs	GACAATGGGGACA	.	114.0	87.0	240.0	0.0	.	566
CHD1L	9557	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	146747893	146747893	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHD1L	NM_004284	exon14	c.A1511T	p.Q504L	GAGCCCAGAAACC	.	129.0	102.0	76.0	0.0	.	231
CHEK2	11200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	29130640	29130640	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHEK2	NM_145862	exon2	c.A70T	p.S24C	TAACGCTGCCATG	.	94.0	33.0	110.0	0.0	.	1515
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	369957	369957	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHL1	NM_001253388	exon3	c.A305T	p.H102L	TATCTCACTTTCA	.	163.0	85.0	187.0	0.0	.	583
CHPF	79586	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220406616	220406616	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHPF	NM_024536	exon2	c.A610T	p.T204S	CCTCGGTGTAGGT	.	55.0	25.0	77.0	0.0	.	90
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	136700927	136700927	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CHRM2	NM_001006632	exon3	c.T1315A	p.C439S	CCTGCCTGCTATG	.	148.0	63.0	163.0	0.0	.	94
CIC	23152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42793207	42793207	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CIC	NM_015125	exon7	c.G1099C	p.E367Q	GGCGGAGAAGTAG	.	31.0	18.0	34.0	0.0	.	591
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	19651056	19651056	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CILP2	NM_153221	exon3	c.A207T	p.G69G	CCCCGGAGGCGAC	.	30.0	15.0	27.0	0.0	.	91
CILP2	148113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19655120	19655120	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CILP2	NM_153221	exon8	c.G1766T	p.G589V	CTTCTGGCGCTTT	.	56.0	33.0	71.0	0.0	.	91
CKAP2L	150468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113518343	113518343	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CKAP2L	NM_152515	exon4	c.105-2A>T	.	AAGGCCTATAAAA	.	269.0	114.0	335.0	0.0	.	90
CLASP2	23122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	33552159	33552159	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLASP2	NM_015097	exon37	c.A4235G	p.D1412G	GGGTAGTCTGCAG	.	106.0	45.0	126.0	0.0	.	93
CLCA1	1179	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	86961307	86961307	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLCA1	NM_001285	exon12	c.G2062T	p.V688L	CGGAGAGTGATAC	.	87.0	43.0	95.0	0.0	.	91
CLDN16	10686	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	190120151	190120151	+	Missense_Mutation	SNP	G	G	T	rs104893732	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLDN16	NM_006580	exon2	c.G350T	p.W117L	GCCTCTGGTGGGA	.	65.0	20.0	83.0	0.0	.	227
CLEC16A	23274	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	11076808	11076808	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLEC16A	NM_015226	exon9	c.A1031T	p.E344V	TGTCTGAGATGTA	.	57.0	25.0	51.0	0.0	.	92
CLEC2B	9976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10005916	10005916	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLEC2B	NM_005127	exon5	c.A433T	p.R145W	TTTTCCTGCAAAT	.	59.0	29.0	51.0	0.0	.	90
CLK2	1196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155234093	155234093	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLK2	NM_003993	exon12	c.1144-2A>T	.	TGGGTCTGGGAAA	.	345.0	239.0	175.0	1.0	.	333
CLSTN1	22883	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	9795215	9795215	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CLSTN1	NM_001009566	exon14	c.C1901T	p.T634I	ATGCAGGTGGCCT	.	37.0	15.0	59.0	0.0	.	523
CMTM4	146223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	66670433	66670433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CMTM4	NM_178818	exon2	c.C238T	p.P80S	CACACGGGGAGCA	.	34.0	29.0	62.0	0.0	.	227
CNBD1	168975	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87899824	87899824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBD1	NM_173538	exon2	c.T143A	p.I48N	GCCACATTAGAGG	.	284.0	124.0	346.0	2.0	.	3
CNBD1	168975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	88365947	88365947	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBD1	NM_173538	exon10	c.T1236G	p.P412P	AGTTCCTTTCACG	.	451.0	189.0	516.0	0.0	.	3
CNBP	7555	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	128890513	128890513	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNBP	NM_003418	exon2	c.A88T	p.R30X	GGCTTCTCATTCC	.	293.0	141.0	367.0	1.0	.	226
CNGA3	1261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98994248	98994248	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNGA3	NM_001298	exon3	c.G200T	p.G67V	TCACCGGCCAGGG	.	70.0	27.0	80.0	0.0	.	96
CNGB1	1258	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	57935438	57935438	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNGB1	NM_001297	exon28	c.C2886T	p.L962L	CTGAAAGAGTGCG	.	37.0	32.0	59.0	0.0	.	137
CNR2	1269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24201051	24201051	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNR2	NM_001841	exon2	c.A1057G	p.R353G	GATCTCTGGAATC	.	58.0	22.0	50.0	0.0	.	228
CNTN6	27255	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	1425084	1425084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTN6	NM_014461	exon19	c.G2509T	p.G837C	GTGCTGGGCTATG	.	42.0	24.0	52.0	0.0	.	345
CNTNAP4	85445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	76523604	76523604	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTNAP4	NM_138994	exon12	c.A1685T	p.Q562L	TCATACAGCACAA	.	49.0	40.0	119.0	0.0	.	70
CNTNAP5	129684	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	125175023	125175023	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CNTNAP5	NM_130773	exon4	c.T385A	p.F129I	CAGACCTTTGCAG	.	65.0	35.0	94.0	0.0	.	524
COBL	23242	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	51095619	51095619	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COBL	NM_015198	exon10	c.A3174C	p.T1058T	GCTTTCTGTGCCA	.	138.0	66.0	174.0	0.0	.	95
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103461545	103461545	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A1	NM_080629	exon27	c.G2331A	p.K777K	CGTTACCTTTACT	.	153.0	64.0	181.0	0.0	.	586
COL11A1	1301	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	103484377	103484377	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A1	NM_080629	exon10	c.T1383A	p.P461P	TACTGCAGGTCCT	.	506.0	252.0	547.0	1.0	.	586
COL11A2	1302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33143844	33143844	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL11A2	NM_080680	exon29	c.T2217C	p.G739G	ATCCTCACCCTGA	.	91.0	25.0	93.0	1.0	.	95
COL16A1	1307	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32124125	32124125	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL16A1	NM_001856	exon64	c.A3984C	p.P1328P	CTGGCCTGGGAGG	.	50.0	23.0	73.0	1.0	.	98
COL16A1	1307	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	32161363	32161363	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL16A1	NM_001856	exon10	c.A944T	p.E315V	CTTACCTCATCGG	.	86.0	38.0	130.0	0.0	.	98
COL17A1	1308	broad.mit.edu;bcgsc.ca	37	10	105794488	105794488	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL17A1	NM_000494	exon51	c.T3657A	p.P1219P	ACCAGGAGGTCCT	.	99.0	7.0	199.0	0.0	.	95
COL21A1	81578	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55940292	55940292	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL21A1	NM_030820	exon19	c.A1896G	p.G632G	TGGGGCTCCTTTT	.	138.0	55.0	183.0	1.0	.	24
COL28A1	340267	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	7530242	7530242	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL28A1	NM_001037763	exon12	c.A1062T	p.P354P	AGCTCCTGGAGAA	.	87.0	39.0	62.0	0.0	.	93
COL3A1	1281	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	189864285	189864285	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL3A1	NM_000090	exon31	c.T2211A	p.P737P	AAGTCCTGGTCCA	.	48.0	25.0	43.0	0.0	.	581
COL4A4	1286	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	227875174	227875174	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL4A4	NM_000092	exon46	c.C4377A	p.G1459G	TCCAGGGCCAAAC	.	135.0	64.0	144.0	0.0	.	142
COL4A5	1287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	107821343	107821343	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL4A5	NM_000495	exon12	c.T681A	p.G227G	CAAAGGTGAAAAA	.	159.0	145.0	192.0	0.0	.	133
COL6A2	1292	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47552138	47552138	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A2	NM_001849	exon28	c.T2732A	p.L911Q	AATACCTGAACTC	.	23.0	21.0	41.0	0.0	.	515
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	238303641	238303641	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A3	NM_004369	exon3	c.298delC	p.Q100fs	CTTCTTGTTTAGT	.	132.0	63.0	159.0	0.0	.	526
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	238275483	238275483	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A3	NM_004369	exon11	c.T5347A	p.S1783T	CCTCCGAGTCGAT	.	129.0	53.0	199.0	0.0	.	526
COL6A5	256076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130092493	130092493	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_153264	exon2	c.G12A	p.L4L	GATCTTGCTAATT	.	388.0	150.0	456.0	0.0	.	.
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130281939	130281939	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A6	NM_001102608	exon2	c.T92C	p.L31S	TGTTTTTGGTGGA	.	87.0	46.0	104.0	0.0	.	76
COL6A6	131873	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	130284329	130284329	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL6A6	NM_001102608	exon3	c.C1153A	p.Q385K	GCTGAGCAGTATG	.	101.0	46.0	117.0	0.0	.	76
COL9A1	1297	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	70935655	70935655	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A1	NM_001851	exon37	c.C2561A	p.P854H	GCTCCAGGCAAAC	.	66.0	36.0	83.0	0.0	.	94
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40769263	40769263	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon28	c.G1487A	p.G496D	CGAGGGCCGGGGG	.	41.0	20.0	36.0	0.0	.	92
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	40777173	40777173	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon10	c.T518C	p.L173P	CTCACCAGGAAAT	.	46.0	20.0	65.0	0.0	.	92
COL9A2	1298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	40777786	40777786	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COL9A2	NM_001852	exon9	c.364-2A>T	.	GGCCCCTGGGGAG	.	63.0	22.0	88.0	0.0	.	92
CORO2B	10391	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	69006317	69006317	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CORO2B	NM_006091	exon6	c.G702T	p.M234I	GAACATGAAGCGG	.	61.0	20.0	94.0	0.0	.	158
COX6A1	1337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120875944	120875944	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	COX6A1	NM_004373	exon1	c.T15C	p.G5G	AGTTGGTGTGTCC	.	37.0	20.0	58.0	0.0	.	90
CPB1	1360	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	148558665	148558665	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CPB1	NM_001871	exon5	c.A377T	p.E126V	AGATAGAGGCTTG	.	83.0	40.0	78.0	0.0	.	92
CPVL	54504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	29103852	29103852	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CPVL	NM_019029	exon12	c.964-2A>T	.	GGTTCCTGGCAGA	.	72.0	30.0	65.0	0.0	.	92
CR1	1378	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	207741308	207741308	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CR1	NM_000651	exon25	c.A4092G	p.G1364G	CATTGGAGAGAGC	.	143.0	108.0	257.0	0.0	.	93
CREB3L1	90993	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	46334468	46334468	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CREB3L1	NM_052854	exon8	c.C1029A	p.N343K	TGCCAACAGGTGG	.	38.0	14.0	39.0	0.0	.	92
CRHR2	1395	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	30739585	30739585	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRHR2	NM_001202475	exon1	c.G65A	p.C22Y	AGGAGGCAGAGCA	.	39.0	17.0	63.0	0.0	.	524
CRYBA4	1413	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	27026355	27026355	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRYBA4	NM_001886	exon6	c.A495T	p.E165D	GCTGGAATGCGAT	.	45.0	15.0	53.0	0.0	.	90
CRYBB1	1414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26995533	26995533	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CRYBB1	NM_001887	exon6	c.A680T	p.Q227L	AGGGACTGCATCT	.	97.0	40.0	112.0	0.0	.	91
CSDE1	7812	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115275369	115275369	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSDE1	NM_001242891	exon11	c.A1044T	p.K348N	CGTATCTTTGTCT	.	220.0	106.0	237.0	0.0	.	227
CSE1L	1434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47675054	47675054	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSE1L	NM_001256135	exon2	c.A54G	p.T18T	GAAAACACTTGAT	.	52.0	29.0	68.0	0.0	.	290
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	2964161	2964161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon46	c.G6838T	p.D2280Y	CAAAATCTCCTAG	.	49.0	38.0	121.0	0.0	.	86
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2823327	2823327	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon59	c.A9250T	p.R3084W	TCCACCTGCCGTC	.	61.0	43.0	134.0	0.0	.	86
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	2944651	2944651	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon49	c.A7442T	p.Y2481F	CACTGGTACATGC	.	17.0	14.0	64.0	0.0	.	86
CSMD1	64478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	3216815	3216815	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD1	NM_033225	exon21	c.C3163A	p.R1055R	TTCTTCGGCTGAA	.	59.0	48.0	110.0	0.0	.	86
CSMD2	114784	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34190207	34190207	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon18	c.A2674T	p.S892C	CACAGCTGAAGGT	.	109.0	41.0	139.0	1.0	.	103
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	34123600	34123600	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon27	c.T4273A	p.C1425S	TCACACAGCTGAT	.	52.0	26.0	81.0	0.0	.	103
CSMD2	114784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	34128580	34128580	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD2	NM_052896	exon26	c.A4045T	p.K1349X	GGTCCTTGGGCAG	.	96.0	56.0	136.0	0.0	.	103
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113237150	113237150	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD3	NM_198123	exon71	c.T10974A	p.P3658P	TGTTTTAGGTGCA	.	102.0	32.0	105.0	0.0	.	1132
CSMD3	114788	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	113702110	113702110	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSMD3	NM_198123	exon14	c.A2142T	p.I714I	GATGGGTATGTTT	.	89.0	43.0	99.0	0.0	.	1132
CSN3	1448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71113535	71113535	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CSN3	NM_005212	exon3	c.G55T	p.A19S	CCCCAGGCTGTGG	.	278.0	85.0	318.0	0.0	.	93
CST9	128822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23586297	23586297	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CST9	NM_001008693	exon1	c.A205C	p.R69R	ACAGCCTGTAGGC	.	121.0	56.0	107.0	0.0	.	91
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11098804	11098804	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTNND2	NM_001332	exon15	c.G2520T	p.M840I	CCACAGCATCTGG	.	63.0	28.0	71.0	0.0	.	293
CTNND2	1501	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	11117662	11117662	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTNND2	NM_001332	exon13	c.G2177T	p.G726V	TCCTCTCCGGCCG	.	78.0	29.0	122.0	0.0	.	293
CTSC	1075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	88042455	88042455	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CTSC	NM_001814	exon4	c.A517T	p.N173Y	CAAAGTTGTGATC	.	55.0	23.0	73.0	0.0	.	90
CUBN	8029	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	17151661	17151661	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CUBN	NM_001081	exon10	c.T1089A	p.D363E	TGAGGCATCTGGG	.	76.0	27.0	67.0	0.0	.	166
CUL9	23113	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	43155009	43155009	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CUL9	NM_015089	exon6	c.T1413A	p.P471P	GAATCCTATGGAT	.	86.0	35.0	72.0	0.0	.	529
CXCL1	2919	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	74735406	74735406	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CXCL1	NM_001511	exon2	c.C121A	p.L41M	ACTGAACTGCGCT	.	134.0	54.0	153.0	0.0	.	204
CXCL17	284340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42937971	42937971	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CXCL17	NM_198477	exon2	c.T117C	p.S39S	TCTCCTAGAAGCC	.	31.0	18.0	46.0	0.0	.	68
CYBASC3	220002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61124109	61124109	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYBASC3	NM_001161454	exon4	c.A128T	p.Y43F	ATCCAGTAGATAG	.	87.0	44.0	89.0	0.0	.	90
CYLC2	1539	broad.mit.edu;bcgsc.ca	37	9	105767509	105767509	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.G596A	p.G199D	ACAAAGGCAAAGA	.	93.0	6.0	180.0	0.0	.	91
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	105767380	105767380	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.A467C	p.D156A	AGCTAGATGCAAA	.	71.0	9.0	134.0	0.0	.	91
CYLC2	1539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	105767379	105767379	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYLC2	NM_001340	exon5	c.G466T	p.D156Y	AAGCTAGATGCAA	.	71.0	59.0	135.0	0.0	.	91
CYP1A1	1543	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	75013936	75013936	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYP1A1	NM_000499	exon3	c.A948G	p.G316G	ACCAGCTCCAAAG	.	62.0	26.0	80.0	0.0	.	156
CYP21A2	1589	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	32007351	32007351	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	CYP21A2	.	.	.	.	ATTACAAATGTAT	.	613.0	159.0	557.0	0.0	.	68
DAB2IP	153090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	124522473	124522473	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DAB2IP	NM_032552	exon6	c.A841C	p.K281Q	GTGGAGAAGTGGT	.	27.0	22.0	60.0	0.0	.	91
DACH2	117154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	85769362	85769362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DACH2	NM_053281	exon3	c.G608T	p.G203V	TCCCAGGCCTCTT	.	197.0	176.0	224.0	0.0	.	136
DAO	1610	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	109286766	109286766	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DAO	NM_001917	exon6	c.A461T	p.E154V	TAACTGAGAGGGG	.	53.0	21.0	68.0	0.0	.	92
DAW1	164781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	228762991	228762991	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_178821	exon6	c.A534T	p.A178A	TACAGCAGAAATA	.	384.0	143.0	451.0	0.0	.	.
DCAF11	80344	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24586232	24586232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_025230	exon3	c.G262T	p.G88W	CGTCTTGGGGATC	.	147.0	69.0	186.0	0.0	.	.
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6644033	6644033	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DCHS1	NM_003737	exon21	c.A8874T	p.L2958L	AAGTCCTAGGACC	.	29.0	25.0	72.0	0.0	.	73
DCHS1	8642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6653396	6653396	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DCHS1	NM_003737	exon6	c.A3347T	p.E1116V	TGGTTCTCAGCCA	.	30.0	29.0	58.0	0.0	.	73
DDB1	1642	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	61091480	61091480	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDB1	NM_001923	exon7	c.A892T	p.K298X	GATCCTTGAGAGT	.	170.0	75.0	169.0	0.0	.	661
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53521180	53521180	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDHD1	NM_001160147	exon12	c.A2434T	p.S812C	CAGAACTGCTATG	.	134.0	65.0	218.0	0.0	.	92
DDHD1	80821	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53521253	53521253	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDHD1	NM_001160147	exon12	c.A2361G	p.S787S	TTCCATTGAGTCT	.	178.0	78.0	222.0	0.0	.	92
DDRGK1	65992	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	3180750	3180750	+	Splice_Site	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDRGK1	NM_023935	exon5	c.409-2A>C	.	TCTGCCTGGAGAG	.	71.0	29.0	62.0	0.0	.	90
DDX20	11218	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	112305597	112305597	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX20	NM_007204	exon10	c.A1280G	p.Q427R	TTGCCCAGAAATG	.	74.0	9.0	68.0	0.0	.	227
DDX46	9879	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	134109540	134109540	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX46	NM_014829	exon5	c.A602G	p.E201G	GTTTAGAGGACGA	.	116.0	69.0	175.0	0.0	.	227
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70666604	70666604	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX50	NM_024045	exon2	c.A225G	p.E75E	CACTGAAGAAGGA	.	212.0	81.0	231.0	0.0	.	91
DDX50	79009	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70670895	70670895	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX50	NM_024045	exon4	c.A532T	p.I178L	GATTTAATAGCTC	.	190.0	104.0	195.0	1.0	.	91
DDX53	168400	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	23019627	23019627	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX53	NM_182699	exon1	c.A1453G	p.S485G	TTGTCAAGCGACT	.	80.0	74.0	115.0	0.0	.	228
DDX60L	91351	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	169299546	169299546	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DDX60L	NM_001012967	exon33	c.G4444T	p.A1482S	ATTTTGCTGGAAT	.	253.0	87.0	331.0	1.0	.	69
DEF8	54849	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	90021593	90021593	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DEF8	NM_207514	exon4	c.G324A	p.L108L	TGAGCTGCCCCCT	.	13.0	11.0	30.0	0.0	.	68
DEFB113	245927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	49937307	49937307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DEFB113	NM_001037729	exon1	c.T32C	p.V11A	GTGAAGACAAAGG	.	72.0	31.0	84.0	0.0	.	90
DENND1C	79958	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	6478804	6478804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND1C	NM_024898	exon6	c.C356T	p.A119V	TCCTGGGCTAGGA	.	119.0	51.0	179.0	0.0	.	67
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142185462	142185462	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND3	NM_014957	exon14	c.A2199T	p.L733L	AAACCTAGGCGTT	.	76.0	32.0	102.0	0.0	.	91
DENND3	22898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	142188201	142188201	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DENND3	NM_014957	exon16	c.C2502A	p.V834V	CAACGTCTTGCTG	.	38.0	25.0	51.0	0.0	.	91
DES	1674	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220285630	220285630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DES	NM_001927	exon5	c.C978A	p.H326Q	CCGACACCAGATC	.	61.0	26.0	68.0	0.0	.	514
DGKI	9162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	137170144	137170144	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DGKI	NM_004717	exon24	c.T2403A	p.S801S	GGAGCCAGAAGAA	.	190.0	97.0	237.0	0.0	.	228
DHRS7C	201140	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	9674809	9674809	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001220493	exon6	c.G935T	p.G312V	AGTTACCCCTCCT	.	27.0	17.0	42.0	0.0	.	.
DIAPH3	81624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	60490362	60490362	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIAPH3	NM_001042517	exon19	c.G2192C	p.R731P	GGCACCCGAAAAG	.	66.0	32.0	81.0	0.0	.	516
DIP2C	22982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	395294	395294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIP2C	NM_014974	exon25	c.A3086T	p.H1029L	GCCACGTGGTCGC	.	33.0	16.0	29.0	0.0	.	156
DIS3L2	129563	broad.mit.edu;bcgsc.ca	37	2	232894749	232894749	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_001257282	exon5	c.G325T	p.D109Y	AATGGGGATCTGG	.	131.0	7.0	143.0	0.0	.	136
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	232889007	232889007	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_001257282	exon4	c.A231T	p.P77P	TAATCCAAAGAAG	.	389.0	164.0	473.0	0.0	.	136
DIS3L2	129563	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	233001416	233001416	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DIS3L2	NM_152383	exon8	c.A937G	p.N313D	GACTGCAATTTTG	.	126.0	63.0	113.0	0.0	.	136
DISP2	85455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40660858	40660858	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DISP2	NM_033510	exon8	c.A2545T	p.S849C	AGCCCCAGCTGCG	.	33.0	14.0	28.0	0.0	.	92
DKC1	1736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	153996705	153996705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DKC1	NM_001363	exon8	c.A769G	p.K257E	AGTGAAAAGGTAT	.	30.0	27.0	40.0	0.0	.	227
DLG5	9231	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	79601686	79601686	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DLG5	NM_004747	exon7	c.A1390G	p.T464A	CAGATGTGCTGCT	.	43.0	17.0	54.0	0.0	.	98
DMBT1	1755	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	124402796	124402796	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DMBT1	NM_007329	exon53	c.A7124G	p.Y2375C	GCTGCTACCGAGG	.	72.0	52.0	144.0	0.0	.	494
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	124285839	124285839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH10	NM_207437	exon15	c.G2120A	p.G707E	CAGCTGGGATACA	.	74.0	38.0	76.0	0.0	.	95
DNAH10	196385	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124383215	124383215	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH10	NM_207437	exon55	c.T9140A	p.L3047Q	AGCGTCTGGATGG	.	92.0	44.0	92.0	0.0	.	95
DNAH11	8701	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	21646303	21646303	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH11	.	.	.	.	ACACTATGCCCCT	.	57.0	26.0	65.0	0.0	.	146
DNAH11	8701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	21630534	21630534	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH11	NM_001277115	exon13	c.2170-2A>T	.	TTTAATAGCTAGT	.	194.0	99.0	236.0	0.0	.	146
DNAH3	55567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21136500	21136500	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH3	NM_017539	exon9	c.A1400C	p.H467P	ACTTTGTGTATCA	.	68.0	35.0	51.0	0.0	.	167
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	84954900	84954900	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH6	NM_001370	exon61	c.A10080G	p.R3360R	TTCAAGAGGACTT	.	77.0	35.0	78.0	0.0	.	69
DNAH6	1768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	85024758	85024758	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH6	NM_001370	exon70	c.T11457A	p.H3819Q	AATGCATGAAAAT	.	57.0	33.0	65.0	0.0	.	69
DNAH8	1769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	38816528	38816528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH8	NM_001206927	exon37	c.A5150G	p.Y1717C	GGGTTTATCTTGA	.	107.0	48.0	107.0	0.0	.	615
DNAH9	1770	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	11809030	11809030	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAH9	NM_001372	exon61	c.G11653A	p.D3885N	GCCCTAGATTTTG	.	39.0	32.0	84.0	0.0	.	168
DNAJB6	10049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	157160147	157160147	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJB6	NM_058246	exon5	c.G316T	p.G106X	TTTGGTGGAAGGG	.	59.0	29.0	75.0	0.0	.	93
DNAJC13	23317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132153447	132153447	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC13	NM_015268	exon2	c.A53G	p.H18R	CAAAACATTCATG	.	26.0	15.0	43.0	0.0	.	272
DNAJC18	202052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	138760775	138760775	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC18	NM_152686	exon5	c.A588G	p.T196T	GTCATCTGTCACA	.	53.0	27.0	57.0	0.0	.	227
DNAJC6	9829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	65852603	65852603	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNAJC6	NM_001256864	exon8	c.A1104G	p.L368L	CCGGCTACAGGCT	.	118.0	47.0	122.0	0.0	.	272
DNM3	26052	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	172007520	172007520	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DNM3	NM_001136127	exon7	c.T911C	p.L304S	GACAGTTGCTCTC	.	549.0	125.0	293.0	1.0	.	90
DOCK10	55619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	225635277	225635277	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK10	NM_014689	exon54	c.T6290G	p.L2097W	TCCTTCAAAAGCT	.	95.0	37.0	106.0	0.0	.	92
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117722105	117722105	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK11	NM_144658	exon17	c.A1801G	p.I601V	GATTGTATTACTT	.	47.0	45.0	54.0	0.0	.	93
DOCK11	139818	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	117722147	117722147	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK11	NM_144658	exon17	c.T1843G	p.C615G	AAGAATTGCCAAA	.	46.0	41.0	57.0	0.0	.	93
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169122911	169122911	+	Silent	SNP	G	G	T	rs199921409	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon10	c.G948T	p.T316T	GTGCACGCAGGGA	.	56.0	16.0	75.0	0.0	G|0.999;A|0.001	97
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169144485	169144485	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon21	c.A2129T	p.Y710F	TGGCTTACAAGTA	.	64.0	35.0	96.0	0.0	.	97
DOCK2	1794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	169188534	169188534	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOCK2	NM_004946	exon25	c.A2459C	p.Y820S	TCCTGTATGAGTT	.	52.0	20.0	77.0	0.0	.	97
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37572789	37572789	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOPEY2	NM_005128	exon4	c.A481T	p.I161F	TCCGAGATCTCCG	.	31.0	14.0	27.0	0.0	.	91
DOPEY2	9980	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37605269	37605269	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DOPEY2	NM_005128	exon15	c.A2518G	p.S840G	TATAAGAGCTCTG	.	158.0	74.0	191.0	0.0	.	91
DPCR1	135656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30919181	30919181	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPCR1	NM_080870	exon2	c.T2940A	p.P980P	AGAGCCTACAGAA	.	70.0	36.0	62.0	0.0	.	90
DPP3	10072	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66258740	66258740	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPP3	NM_130443	exon7	c.T684C	p.S228S	GGACTCTGAGGTG	.	104.0	47.0	162.0	1.0	.	46
DPP4	1803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162851476	162851476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPP4	NM_001935	exon25	c.G2194T	p.A732S	CCATTGCCTGGAA	.	183.0	89.0	203.0	0.0	.	93
DPRX	503834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54139945	54139945	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPRX	NM_001012728	exon3	c.T279A	p.G93G	AGAGGGTGGGGTC	.	65.0	25.0	98.0	0.0	.	90
DPY19L1	23333	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35053222	35053222	+	Silent	SNP	G	G	A	rs184995902		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DPY19L1	NM_015283	exon4	c.C288T	p.P96P	GACAAGGGGGTAT	.	237.0	112.0	222.0	0.0	G|0.999;A|0.000	68
DRAP1	10589	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65688799	65688799	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DRAP1	NM_006442	exon7	c.513-2A>T	.	CCCTGCAGCCCCC	.	148.0	80.0	168.0	0.0	.	90
DSE	29940	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116747748	116747748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSE	NM_001080976	exon3	c.A428G	p.D143G	TGAAAGATGCTCC	.	33.0	5.0	50.0	0.0	.	91
DSEL	92126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	65180193	65180193	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSEL	NM_032160	exon2	c.T1683C	p.F561F	ACTCACAAATACC	.	109.0	44.0	105.0	0.0	.	157
DSG3	1830	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	29039011	29039011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DSG3	NM_001944	exon5	c.C388A	p.L130I	CGGGCTCTAAATG	.	165.0	67.0	176.0	0.0	.	98
DTNA	1837	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	32444004	32444004	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DTNA	NM_001390	exon16	c.A1640T	p.E547V	AGTTGGAGGGTCT	.	35.0	19.0	35.0	0.0	.	153
DTX3	196403	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	58001020	58001020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DTX3	NM_178502	exon5	c.T374A	p.L125H	CCCCTCTCCGAGC	.	44.0	21.0	50.0	0.0	.	1083
DUSP27	92235	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	167096996	167096996	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DUSP27	NM_001080426	exon5	c.A2628T	p.E876D	CAAGGAAGATGAG	.	100.0	73.0	60.0	0.0	.	71
DYDC1	143241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	82102044	82102044	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYDC1	NM_001269053	exon4	c.C323G	p.A108G	TCTTGAGCTCTCT	.	67.0	29.0	84.0	0.0	.	68
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102984375	102984375	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYNC2H1	NM_001377	exon2	c.A305T	p.E102V	TGTTAGAGTCACC	.	122.0	53.0	140.0	0.0	.	68
DYNC2H1	79659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	103018556	103018556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYNC2H1	NM_001377	exon19	c.G2758T	p.D920Y	GTGATTGATGATC	.	43.0	21.0	49.0	0.0	.	68
DYSF	8291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	71780941	71780941	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DYSF	NM_001130982	exon22	c.C2031T	p.C677C	AGGGTGCCACTAC	.	53.0	21.0	49.0	0.0	.	158
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108396342	108396342	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DZIP3	NM_014648	exon26	c.2782-2A>T	.	TCTACCAGACACA	.	207.0	95.0	248.0	1.0	.	91
DZIP3	9666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108396438	108396438	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	DZIP3	NM_014648	exon26	c.A2876T	p.E959V	GTCCTGAGATACT	.	194.0	88.0	291.0	0.0	.	91
E4F1	1877	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	2282755	2282755	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	E4F1	NM_004424	exon6	c.731-2A>C	.	CTCTGCAGATGAG	.	36.0	21.0	56.0	0.0	.	187
ECE2	9718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184009911	184009911	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ECE2	NM_014693	exon19	c.G2537T	p.S846I	CCCACAGCCCTGC	.	106.0	26.0	119.0	0.0	.	94
ECSCR	641700	broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	138837135	138837135	+	Missense_Mutation	SNP	G	G	T	rs199523425	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	CCTGGGGTACCAG	.	73.0	43.0	105.0	1.0	.	.
ECT2L	345930	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	139164260	139164260	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ECT2L	NM_001195037	exon5	c.A487G	p.T163A	GCTGCTACTTATG	.	64.0	19.0	68.0	0.0	.	22
EDAR	10913	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	109527291	109527291	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDAR	NM_022336	exon8	c.A671T	p.H224L	CCCGGGTGGCTGG	.	80.0	42.0	90.0	1.0	.	92
EDC4	23644	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67909967	67909967	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDC4	NM_014329	exon2	c.A202G	p.T68A	CTTCGGACCATGC	.	30.0	25.0	96.0	0.0	.	92
EDEM2	55741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33714169	33714169	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EDEM2	NM_018217	exon8	c.A854G	p.K285R	ATGGCTTTGTTAT	.	68.0	26.0	99.0	0.0	.	90
EFHA1	221154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	22113457	22113457	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFHA1	NM_152726	exon4	c.A450T	p.R150S	AAGGTCTCTGAAA	.	182.0	84.0	197.0	0.0	.	90
EFHB	151651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	19921298	19921298	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFHB	NM_144715	exon14	c.2329-2A>G	.	GCAATCTAGAAAA	.	47.0	25.0	40.0	0.0	.	22
EFTUD1	79631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82444096	82444096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EFTUD1	NM_024580	exon18	c.G2699A	p.S900N	AATTTACTTAGGT	.	98.0	41.0	84.0	0.0	.	91
EHMT1	79813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	140695341	140695341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EHMT1	NM_024757	exon18	c.G2617T	p.G873C	GACGGAGGCTGGA	.	58.0	45.0	134.0	0.0	.	154
EIF3D	8664	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	36920644	36920644	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EIF3D	NM_003753	exon4	c.A305T	p.Q102L	CCTACCTGGGCAA	.	56.0	28.0	75.0	0.0	.	69
ELANE	1991	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	853327	853327	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELANE	NM_001972	exon3	c.A290C	p.Q97P	CCCGGCAGGTGTT	.	138.0	54.0	152.0	1.0	.	91
ELFN2	114794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	37769351	37769351	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELFN2	NM_052906	exon3	c.A2224T	p.T742S	AGTAGGTGGAGTC	.	44.0	18.0	51.0	0.0	.	70
ELMOD2	255520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	141448650	141448650	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELMOD2	NM_153702	exon3	c.171+2T>C	.	ATAAGGTAGGATA	.	272.0	115.0	375.0	0.0	.	91
ELSPBP1	64100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48519284	48519284	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ELSPBP1	NM_022142	exon4	c.T343G	p.C115G	AAATTCTGTGAAA	.	57.0	19.0	82.0	0.0	.	90
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	89154769	89154769	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EML5	NM_183387	exon18	c.2588delA	p.N863fs	GTGTCATTTTTCC	.	56.0	23.0	62.0	0.0	.	93
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14749129	14749129	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EMR3	NM_032571	exon11	c.T1272A	p.G424G	CAAAGCACCGGCG	.	55.0	30.0	78.0	0.0	.	528
EMR3	84658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14755018	14755018	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EMR3	NM_032571	exon9	c.A952T	p.R318W	CATCCCTGGACCA	.	66.0	30.0	75.0	0.0	.	528
EN1	2019	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	119600649	119600649	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EN1	NM_001426	exon2	c.G1044T	p.K348N	CCAGATCTTGATC	.	44.0	18.0	53.0	0.0	.	154
ENPP2	5168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	120594814	120594814	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ENPP2	NM_006209	exon19	c.T1728C	p.N576N	CCCATTATTAGGA	.	89.0	34.0	63.0	0.0	.	292
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	5396213	5396213	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB41L3	NM_012307	exon19	c.A2960G	p.Y987C	GATTCATATGTGA	.	36.0	31.0	80.0	0.0	.	95
EPB41L3	23136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	5416315	5416315	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB41L3	NM_012307	exon13	c.A1569G	p.T523T	GGGAGATGTGGGG	.	26.0	19.0	35.0	0.0	.	95
EPB42	2038	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	43500883	43500883	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPB42	NM_000119	exon7	c.A1013G	p.Y338C	TCATTATAGTATT	.	139.0	65.0	120.0	0.0	.	92
EPHB3	2049	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	184298263	184298263	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPHB3	NM_004443	exon12	c.T2246A	p.L749Q	AGTACCTGTCCGA	.	80.0	35.0	105.0	0.0	.	1455
EPS15	2060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	51864724	51864724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EPS15	NM_001981	exon20	c.A2032G	p.N678D	TATTGTTGGCTGC	.	46.0	21.0	49.0	0.0	.	1082
ERI3	79033	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	44713653	44713653	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ERI3	NM_024066	exon8	c.G889T	p.G297C	TGAGGCCCTTGTT	.	64.0	29.0	74.0	0.0	.	92
ESM1	11082	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54281099	54281099	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ESM1	NM_001135604	exon1	c.T247G	p.C83G	GCTGACACCTCAG	.	91.0	52.0	124.0	1.0	.	90
EXOSC7	23016	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	45046818	45046818	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EXOSC7	NM_015004	exon6	c.G527C	p.G176A	AAGAGGGGTCGAA	.	114.0	47.0	132.0	0.0	.	90
EYS	346007	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	65301602	65301602	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EYS	NM_001142800	exon26	c.T4158G	p.D1386E	TCTCCTATCAGGA	.	74.0	28.0	95.0	1.0	.	660
EYS	346007	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	66204911	66204911	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	EYS	NM_001142801	exon4	c.393delA	p.K131fs	CATTCCTTTTAGT	.	99.0	44.0	102.0	0.0	.	660
F2RL3	9002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	17000522	17000522	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	F2RL3	NM_003950	exon2	c.T248A	p.L83H	CCGCCCTCTATGG	.	25.0	13.0	20.0	0.0	.	226
F5	2153	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169521814	169521814	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	F5	NM_000130	exon8	c.A1277T	p.Q426L	CTGACCTGGGCTC	.	184.0	138.0	116.0	0.0	.	157
FAHD2B	151313	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	97757306	97757306	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAHD2B	NM_199336	exon2	c.A138T	p.T46T	ATTCCCTGTCTCC	.	178.0	75.0	225.0	2.0	.	90
FAIM2	23017	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	50294962	50294962	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAIM2	NM_012306	exon2	c.A162T	p.P54P	GGGGGCTGGGGGG	.	33.0	12.0	23.0	0.0	.	230
FAM102B	284611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109171192	109171192	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM102B	NM_001010883	exon8	c.A828T	p.S276S	AGCTTCAGAAAAA	.	128.0	65.0	129.0	0.0	.	135
FAM107B	83641	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	14563994	14563994	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM107B	NM_031453	exon4	c.A678T	p.P226P	CAATTCTGGTTTG	.	59.0	26.0	73.0	0.0	.	156
FAM120B	84498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	170627636	170627636	+	Missense_Mutation	SNP	G	G	T	rs201916124		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM120B	NM_032448	exon2	c.G1158T	p.R386S	ACCCAGGCAAGAA	.	166.0	77.0	244.0	0.0	G|0.999;T|0.001	91
FAM131B	9715	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	143054107	143054107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM131B	NM_001031690	exon7	c.G619T	p.A207S	CTTGAGCCAGGGC	.	99.0	44.0	132.0	0.0	.	90
FAM157B	100132403	broad.mit.edu;ucsc.edu;mdanderson.org	37	9	141109873	141109873	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145249	exon3	c.A502C	p.K168Q	GCCACGAAGCGCA	.	369.0	109.0	587.0	0.0	.	.
FAM168B	130074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	131813019	131813019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM168B	NM_001009993	exon5	c.G301A	p.G101S	ACGTGCCTTGCTG	.	111.0	48.0	117.0	0.0	.	90
FAM171B	165215	broad.mit.edu;bcgsc.ca	37	2	187627316	187627316	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM171B	NM_177454	exon8	c.A2247G	p.G749G	GAGTGGAACCACC	.	125.0	7.0	145.0	1.0	.	141
FAM181A	90050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94395161	94395161	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM181A	NM_138344	exon3	c.T716A	p.L239Q	AGCCCCTGGGACC	.	22.0	15.0	42.0	0.0	.	90
FAM194A	131831	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	150396254	150396254	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM194A	NM_152394	exon10	c.A1199C	p.Q400P	CTTAGTTGAAAAT	.	230.0	87.0	222.0	0.0	.	93
FAM205A	259308	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	34723610	34723610	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001141917	exon4	c.T3627G	p.S1209S	GAAGCTAGACTCT	.	34.0	12.0	29.0	0.0	.	.
FAM214A	56204	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	52879347	52879347	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_019600	exon12	c.2877+1G>A	.	CACATACCACTTG	.	63.0	25.0	114.0	0.0	.	.
FAM227B	196951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	49867301	49867301	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152647	exon8	c.A552C	p.R184S	AAAAACTCTTTCC	.	271.0	115.0	329.0	0.0	.	.
FAM47C	442444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	37027900	37027900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM47C	NM_001013736	exon1	c.C1417T	p.H473Y	GTGTCCCATCTCT	.	50.0	46.0	54.0	0.0	.	111
FAM5B	57795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177226313	177226313	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM5B	NM_021165	exon4	c.A462G	p.G154G	CATAGGAGAAGAG	.	309.0	234.0	191.0	0.0	.	28
FAM69C	125704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	72114218	72114218	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM69C	NM_001044369	exon2	c.A499T	p.S167C	CCAGGCTGCTGTT	.	61.0	32.0	60.0	0.0	.	68
FAM71B	153745	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	156593123	156593123	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM71B	NM_130899	exon1	c.T57A	p.S19R	GAACGCACTCATT	.	79.0	33.0	140.0	1.0	.	96
FAM74A3	728495	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	40716160	40716160	+	RNA	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM74A3	.	.	.	.	GACATGGAGAGAG	.	594.0	137.0	532.0	0.0	.	23
FAM83H	286077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	144808647	144808647	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM83H	NM_198488	exon5	c.A2984T	p.Q995L	TCGGGTTGGCCGT	.	27.0	13.0	31.0	0.0	.	92
FAM9A	171482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	8767070	8767070	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAM9A	NM_174951	exon3	c.A157T	p.R53W	CCTTCCTGCTGCG	.	72.0	62.0	106.0	0.0	.	130
FAN1	22909	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	31197069	31197069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAN1	NM_001146095	exon2	c.A203T	p.D68V	ACAATGACTTCGT	.	157.0	63.0	140.0	0.0	.	90
FANCM	57697	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45658267	45658267	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FANCM	NM_020937	exon20	c.A5042T	p.N1681I	ATGTAAATGATAA	.	106.0	44.0	111.0	0.0	.	569
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187538294	187538294	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT1	NM_005245	exon11	c.G8940A	p.V2980V	TTTCTTCACATAT	.	47.0	36.0	126.0	0.0	.	34
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	187539226	187539226	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT1	NM_005245	exon10	c.A8514T	p.S2838S	GGTTCCTGAGTCA	.	48.0	29.0	83.0	0.0	.	34
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150945854	150945854	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT2	NM_001447	exon1	c.A2639C	p.H880P	TCCAGGTGTCCTG	.	84.0	33.0	107.0	0.0	.	96
FAT2	2196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150946124	150946124	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT2	NM_001447	exon1	c.T2369C	p.V790A	ACTGTTACATTGA	.	51.0	24.0	52.0	0.0	.	96
FAT3	120114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	92523226	92523226	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT3	NM_001008781	exon7	c.A4453T	p.T1485S	GAAGCCACAGATA	.	131.0	61.0	138.0	0.0	.	73
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126242079	126242079	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon1	c.A4513T	p.I1505L	GTGCCAATAGAAA	.	93.0	32.0	138.0	2.0	.	108
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126328166	126328166	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon3	c.A5439T	p.L1813L	ACTGCTAGTTCGT	.	80.0	12.0	116.0	1.0	.	108
FAT4	79633	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	126241950	126241950	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon1	c.C4384A	p.Q1462K	ATTCAACAGATGC	.	176.0	19.0	231.0	1.0	.	108
FAT4	79633	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	126328165	126328165	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FAT4	NM_024582	exon3	c.T5438C	p.L1813P	CACTGCTAGTTCG	.	80.0	12.0	117.0	0.0	.	108
FAXDC2	10826	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154200873	154200873	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032385	exon8	c.C792T	p.G264G	GTGGTAGCCACAG	.	164.0	83.0	217.0	1.0	.	.
FBN1	2200	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48756135	48756135	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN1	NM_000138	exon41	c.C5026A	p.P1676T	AGTCTGGAGGACA	.	57.0	24.0	77.0	0.0	.	92
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127609596	127609596	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN2	NM_001999	exon61	c.A7776C	p.P2592P	ACTGCCTGGAGTG	.	150.0	78.0	202.0	0.0	.	146
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	127653902	127653902	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN2	NM_001999	exon36	c.T4656C	p.G1552G	ATAGCGACCAGGC	.	181.0	94.0	236.0	0.0	.	146
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	8175948	8175948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBN3	NM_032447	exon32	c.T4204A	p.C1402S	CCTGGCAGGCCCG	.	50.0	17.0	63.0	0.0	.	100
FBRS	64319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	30680873	30680873	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBRS	NM_001105079	exon12	c.G1290C	p.P430P	CCCACCGGGAGCC	.	72.0	32.0	64.0	0.0	.	23
FBXO27	126433	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39517611	39517611	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBXO27	NM_178820	exon5	c.A607T	p.R203X	GGAGTCTGTACAT	.	85.0	26.0	88.0	0.0	.	227
FBXW10	10517	broad.mit.edu;mdanderson.org	37	17	18653220	18653220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FBXW10	NM_001267585	exon3	c.T856C	p.S286P	CACCTCTCCAAGT	.	506.0	156.0	652.0	0.0	.	91
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157488541	157488541	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRL5	NM_031281	exon14	c.A2692T	p.T898S	GATAGGTGGGCTC	.	182.0	34.0	96.0	0.0	.	156
FCRL5	83416	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	157514159	157514159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRL5	NM_031281	exon5	c.A737T	p.Q246L	GTAATCTGGAAAT	.	274.0	198.0	145.0	1.0	.	156
FCRLA	84824	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161682966	161682966	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FCRLA	NM_001184866	exon6	c.T945A	p.P315P	TGGGCCTCTGCCT	.	161.0	118.0	91.0	0.0	.	226
FER1L5	90342	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	97315365	97315365	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L5	NM_001113382	exon5	c.T345C	p.T115T	GTGTACTGTCACC	.	74.0	28.0	76.0	0.0	.	23
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124987506	124987506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L6	NM_001039112	exon8	c.A643T	p.T215S	TTGAAGACCAGCC	.	216.0	95.0	323.0	0.0	.	100
FER1L6	654463	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124998413	124998413	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FER1L6	NM_001039112	exon12	c.A1516G	p.I506V	GTTTCTATTGGTA	.	60.0	19.0	72.0	0.0	.	100
FERD3L	222894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	19184845	19184845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FERD3L	NM_152898	exon1	c.A141T	p.R47R	TCCCTCTCGGAGC	.	37.0	18.0	44.0	0.0	.	153
FGF21	26291	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	49261303	49261303	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FGF21	NM_019113	exon3	c.A456T	p.P152P	GTCCCCACACCGG	.	164.0	59.0	188.0	0.0	.	522
FHDC1	85462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153897040	153897040	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FHDC1	NM_033393	exon11	c.C2597A	p.S866Y	GAGGCTCCCTGAA	.	177.0	83.0	243.0	0.0	.	136
FKBP4	2288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	2909266	2909266	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FKBP4	NM_002014	exon7	c.A824G	p.E275G	TGAAAGAGCGGGG	.	50.0	22.0	49.0	0.0	.	226
FLG	2312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152286887	152286887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLG	NM_002016	exon3	c.A475G	p.K159E	TTTCTTTTTTTTC	.	111.0	80.0	58.0	0.0	.	106
FLJ33360	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	6312538	6312538	+	RNA	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	CCAGCCTGGCAGG	.	76.0	37.0	90.0	0.0	.	.
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128488063	128488063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLNC	NM_001127487	exon26	c.A4521T	p.P1507P	CACCCCAGCCACT	.	138.0	50.0	152.0	0.0	.	141
FLNC	2318	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	128494857	128494857	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLNC	NM_001458	exon42	c.T7026A	p.A2342A	GGAGGCTGGCGCT	.	56.0	24.0	66.0	0.0	.	141
FLRT2	23768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	86089087	86089087	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLRT2	NM_013231	exon2	c.A1229G	p.D410G	TTCCTGACTGGGA	.	189.0	75.0	211.0	0.0	.	94
FLT3	2322	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	28601380	28601380	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLT3	NM_004119	exon18	c.2054-2A>G	.	TGGTCCTGAAATA	.	52.0	29.0	67.0	0.0	.	42117
FLT4	2324	broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	180037027	180037027	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FLT4	NM_182925	exon29	c.3687-2A>T	.	AATACCTGTGGGG	.	47.0	17.0	62.0	1.0	.	1490
FMN1	342184	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33091016	33091016	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FMN1	NM_001103184	exon15	c.A3450G	p.I1150M	TTTAGATATGTTT	.	62.0	27.0	77.0	0.0	.	23
FMO2	2327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171174726	171174726	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FMO2	NM_001460	exon7	c.T1136C	p.F379S	CCATTTTCCCAAC	.	116.0	80.0	76.0	0.0	.	91
FNDC3A	22862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49781371	49781371	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FNDC3A	NM_001079673	exon26	c.A3437T	p.Q1146L	TCTCTCAGAGGAC	.	136.0	126.0	158.0	0.0	.	278
FNIP1	96459	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	131066598	131066598	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FNIP1	NM_001008738	exon3	c.A353T	p.Q118L	CTTACCTGGTACT	.	115.0	46.0	172.0	0.0	.	92
FOLR1	2348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	71907162	71907162	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOLR1	NM_016729	exon4	c.T715A	p.W239R	GGGCCCTGGGCAG	.	84.0	39.0	99.0	0.0	.	91
FOLR4	390243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94040439	94040439	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOLR4	NM_001199206	exon3	c.T457A	p.W153R	TCCAACTGGCGTG	.	65.0	30.0	97.0	0.0	.	23
FOS	2353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75747981	75747981	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOS	NM_005252	exon4	c.A997T	p.S333C	ACTCCCAGCTGCA	.	34.0	16.0	39.0	0.0	.	847
FOXJ1	2302	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74133497	74133497	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXJ1	NM_001454	exon3	c.G1203T	p.E401D	CCCAGCCTCAAAG	.	10.0	4.0	19.0	0.0	.	227
FOXK1	221937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	4794986	4794986	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXK1	NM_001037165	exon4	c.A1022G	p.Y341C	ACCCCTACTACCG	.	99.0	29.0	105.0	0.0	.	516
FOXS1	2307	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	30432970	30432970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FOXS1	NM_004118	exon1	c.C376T	p.P126S	TGGCGGGGCCCCG	.	27.0	13.0	27.0	0.0	.	69
FPR1	2357	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	52249744	52249744	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FPR1	NM_001193306	exon3	c.T504A	p.P168P	TTTACCAGGTACT	.	48.0	24.0	54.0	0.0	.	524
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79229364	79229364	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_001166133	exon15	c.1678+1G>T	.	GTAGCGGTGAGTG	.	76.0	27.0	115.0	0.0	.	68
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79285157	79285157	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_001166133	exon22	c.A2671T	p.S891C	ACCTGCAGCACCA	.	80.0	33.0	100.0	0.0	.	68
FRAS1	80144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	79458286	79458286	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRAS1	NM_025074	exon72	c.T11230A	p.Y3744N	ACAATCTACAATG	.	87.0	31.0	119.0	0.0	.	68
FREM1	158326	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	14808126	14808126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM1	NM_144966	exon18	c.A2900G	p.E967G	CCAATCTCGCCAC	.	112.0	82.0	105.0	1.0	.	138
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39262741	39262741	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM2	NM_207361	exon1	c.A1260T	p.A420A	AGGAGCAGCTTCA	.	60.0	28.0	77.0	0.0	.	100
FREM2	341640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	39357294	39357294	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FREM2	NM_207361	exon5	c.T5729A	p.V1910E	GAGATGTGAGCCA	.	103.0	42.0	104.0	0.0	.	100
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32812069	32812069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRY	NM_023037	exon44	c.A6364T	p.S2122C	CTCTTCAGTCTGC	.	55.0	27.0	88.0	0.0	.	142
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	32841436	32841436	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FRY	NM_023037	exon55	c.G8076C	p.M2692I	GCTTATGTGTGAC	.	36.0	15.0	51.0	0.0	.	142
FSHR	2492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	49190265	49190265	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSHR	NM_000145	exon10	c.T1695C	p.S565S	GTCACTAGAGGAG	.	76.0	36.0	85.0	0.0	.	527
FSIP2	401024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	186671974	186671974	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSIP2	NM_173651	exon17	c.A18208G	p.K6070E	GAATCTAAGGATG	.	98.0	38.0	91.0	0.0	.	90
FSTL5	56884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	162954782	162954782	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FSTL5	NM_020116	exon3	c.T155A	p.V52D	CCTTTGACTCTTG	.	107.0	50.0	147.0	0.0	.	158
FXYD4	53828	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43870979	43870979	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FXYD4	NM_001184963	exon6	c.T130G	p.C44G	CTGATCTGCGGAG	.	83.0	38.0	88.0	0.0	.	90
FYCO1	79443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	46011256	46011256	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FYCO1	NM_024513	exon7	c.A541G	p.R181G	GCGTCCTCCTGTG	.	34.0	17.0	57.0	0.0	.	91
FZD2	2535	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	42635241	42635241	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	FZD2	NM_001466	exon1	c.G185T	p.G62V	TTCTGGGCCACAC	.	69.0	36.0	85.0	0.0	.	660
GABBR1	2550	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	29595353	29595353	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABBR1	NM_001470	exon6	c.G567A	p.Q189Q	CGCGGGCTGGCAG	.	27.0	11.0	21.0	1.0	.	521
GABRB2	2561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	160753450	160753450	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRB2	NM_021911	exon10	c.T1116C	p.Y372Y	GGATCGATATTGG	.	55.0	16.0	53.0	0.0	.	91
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	46066495	46066495	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG1	NM_173536	exon5	c.C588A	p.P196P	ATCCATGGGAAAG	.	328.0	137.0	403.0	0.0	.	92
GABRG1	2565	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	46099287	46099287	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GABRG1	NM_173536	exon2	c.G184T	p.G62X	TATCTCCTTCATG	.	126.0	66.0	204.0	1.0	.	92
GABRG3	2567	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	27777744	27777744	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_033223	exon10	c.1123-2A>T	.	GCTTGCAGAACTA	.	57.0	29.0	72.0	0.0	.	.
GADL1	339896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	30903131	30903131	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GADL1	NM_207359	exon2	c.T164C	p.L55P	ATTATTAGCCTAC	.	129.0	70.0	117.0	0.0	.	90
GALC	2581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88401194	88401194	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALC	NM_000153	exon17	c.A1940T	p.D647V	GACTTGTCATTCA	.	61.0	21.0	70.0	0.0	.	90
GALNT16	57452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	69727044	69727044	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001168368	exon1	c.A37T	p.T13S	ATCCTGACCGTAG	.	49.0	26.0	68.0	0.0	.	.
GALNTL6	442117	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	173730577	173730577	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GALNTL6	NM_001034845	exon6	c.A619G	p.K207E	CGCACCAAGAAAA	.	85.0	27.0	104.0	0.0	.	137
GAPVD1	26130	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	128124887	128124887	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GAPVD1	NM_015635	exon27	c.A4326G	p.A1442A	CTAGGCAAATCCA	.	30.0	23.0	62.0	0.0	.	93
GAS2L3	283431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	101018227	101018227	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GAS2L3	NM_174942	exon10	c.A1644C	p.P548P	AAAGCCAGTCCCA	.	95.0	37.0	102.0	0.0	.	227
GATA6	2627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	19757000	19757000	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GATA6	NM_005257	exon3	c.G1220A	p.G407D	GCACCGGCCACTA	.	27.0	6.0	24.0	0.0	.	514
GBAP1	2630	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155185393	155185393	+	RNA	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	ATCCCAGGAGCCT	.	193.0	66.0	111.0	0.0	.	.
GCN1L1	10985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	120594786	120594786	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GCN1L1	NM_006836	exon27	c.A3098T	p.E1033V	AGCAACTCCGGGC	.	56.0	18.0	73.0	0.0	.	94
GCNT7	140687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	55071851	55071851	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	TTAAGTTATGGGG	.	221.0	94.0	208.0	0.0	.	.
GDF2	2658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48416370	48416370	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GDF2	NM_016204	exon1	c.T324C	p.I108I	CCGCACAATGTTG	.	48.0	19.0	59.0	0.0	.	229
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154287223	154287223	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEMIN5	NM_015465	exon16	c.A2323G	p.N775D	CACCATTCTCAAC	.	89.0	28.0	132.0	0.0	.	228
GEMIN5	25929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	154317547	154317547	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEMIN5	NM_015465	exon1	c.A147G	p.P49P	TGTCCCTGGACTC	.	127.0	60.0	139.0	0.0	.	228
GEN1	348654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	17959314	17959314	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GEN1	NM_182625	exon12	c.A1248T	p.I416I	TGAAATAGAATGG	.	290.0	145.0	276.0	0.0	.	359
GGPS1	9453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	235505654	235505654	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GGPS1	NM_001037277	exon4	c.G470A	p.G157E	TGTTTGGATTAGC	.	55.0	46.0	114.0	0.0	.	90
GGT5	2687	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24629889	24629889	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GGT5	NM_001099782	exon2	c.T257A	p.M86K	AGGCCCATGCTCT	.	111.0	54.0	101.0	0.0	.	71
GHDC	84514	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	40345476	40345476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GHDC	NM_001142622	exon3	c.G124T	p.G42W	GGGCCCCCCATGC	.	29.0	12.0	33.0	0.0	.	90
GIMAP4	55303	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	150269617	150269617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GIMAP4	NM_018326	exon3	c.C459A	p.F153L	CATATTCACCCGG	.	88.0	29.0	115.0	1.0	.	91
GJA4	2701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	35259856	35259856	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJA4	NM_002060	exon2	c.C42A	p.V14V	CCAGGTCCAGGAG	.	79.0	30.0	84.0	0.0	.	90
GJA8	2703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	147380840	147380840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJA8	NM_005267	exon2	c.A758T	p.H253L	CCCTCCACTCCAT	.	184.0	136.0	91.0	0.0	.	138
GJB5	2709	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	35223306	35223306	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GJB5	NM_005268	exon2	c.T375A	p.G125G	GCGGGGTGGGCTC	.	66.0	36.0	83.0	2.0	.	91
GLB1L3	112937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	134177095	134177095	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLB1L3	NM_001080407	exon10	c.T954C	p.D318D	TAAAGATGCAAAG	.	58.0	22.0	61.0	0.0	.	69
GLIPR1L1	256710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	75728612	75728612	+	Missense_Mutation	SNP	A	A	T	rs143627655	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLIPR1L1	NM_152779	exon1	c.A104T	p.D35V	TTATAGACAACTG	.	107.0	48.0	109.0	0.0	A|0.999;G|0.001	90
GLP1R	2740	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	39040694	39040694	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLP1R	NM_002062	exon6	c.T566A	p.L189Q	TCATCCTGCGAGC	.	71.0	43.0	62.0	0.0	.	659
GLP2R	9340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	9774103	9774103	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLP2R	NM_004246	exon10	c.A1096G	p.I366V	CTTCTCATTTCTA	.	48.0	34.0	134.0	0.0	.	524
GLRA3	8001	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	175565106	175565106	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLRA3	NM_006529	exon10	c.T1226A	p.V409E	GGCATTACCTGGA	.	114.0	50.0	144.0	1.0	.	93
GLTSCR1	29998	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	48197947	48197947	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GLTSCR1	NM_015711	exon8	c.G2859T	p.L953L	AGCGCTGCCCCAG	.	39.0	18.0	34.0	0.0	.	48
GMIP	51291	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19749243	19749243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GMIP	NM_016573	exon8	c.A586G	p.K196E	GCTCCTTGAACTC	.	92.0	33.0	113.0	0.0	.	91
GNB1L	54584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	19808139	19808139	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GNB1L	NM_053004	exon4	c.A236T	p.Q79L	CGCCCCTGGGGCA	.	82.0	32.0	107.0	0.0	.	290
GP6	51206	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55538983	55538983	+	Missense_Mutation	SNP	C	C	A	rs41301959	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GP6	NM_016363	exon4	c.G573T	p.W191C	GGCTGACCACAGG	.	56.0	34.0	78.0	0.0	.	92
GPR137C	283554	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	53100355	53100355	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR137C	NM_001099652	exon5	c.G975T	p.Q325H	GGCACAGAGATTA	.	69.0	30.0	75.0	0.0	.	68
GPR139	124274	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	20084903	20084903	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR139	NM_001002911	exon1	c.C36G	p.S12R	CAGCGAGCTGTTG	.	115.0	52.0	126.0	0.0	.	92
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154145340	154145340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR149	NM_001038705	exon2	c.A1139G	p.Q380R	GCGTTCTGCCTGC	.	49.0	21.0	52.0	0.0	.	96
GPR149	344758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154145356	154145356	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR149	NM_001038705	exon2	c.A1123G	p.I375V	TGATGATGCAGCC	.	56.0	23.0	58.0	0.0	.	96
GPR156	165829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	119886437	119886437	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR156	NM_153002	exon9	c.T1887A	p.P629P	TGCCCCAGGAACA	.	43.0	24.0	53.0	0.0	.	92
GPR158	57512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	25887814	25887814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR158	NM_020752	exon11	c.C3259A	p.L1087I	GAGAAGCTTTTGA	.	76.0	30.0	88.0	0.0	.	141
GPR173	54328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	53106453	53106453	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR173	NM_018969	exon2	c.T650C	p.M217T	GCAAGATGAAGCC	.	30.0	27.0	20.0	0.0	.	130
GPR179	440435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36485679	36485679	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR179	NM_001004334	exon11	c.G3773T	p.S1258I	TTGCCACTGTCTG	.	44.0	20.0	43.0	0.0	.	93
GPR65	8477	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88478190	88478190	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR65	NM_003608	exon2	c.A999T	p.L333F	GGAATTAGAGGTC	.	80.0	37.0	92.0	0.0	.	90
GPR83	10888	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94113896	94113896	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR83	NM_016540	exon4	c.C691A	p.P231T	CAGCTGGCTCAGG	.	31.0	12.0	41.0	0.0	.	92
GPR85	54329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112724069	112724069	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR85	NM_001146265	exon3	c.T708A	p.S236R	CTGGCCACTGGCT	.	55.0	23.0	72.0	0.0	.	91
GPR98	84059	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90059134	90059134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon59	c.G12133A	p.E4045K	ATTGATGAATCCC	.	28.0	11.0	54.0	0.0	.	103
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90055290	90055290	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon58	c.A12005G	p.N4002S	CGTTCAATATTTC	.	72.0	24.0	107.0	0.0	.	103
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	90077396	90077396	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPR98	NM_032119	exon65	c.13231+1G>T	.	TCGAAGGTAGGTT	.	182.0	60.0	262.0	0.0	.	103
GPRC5A	9052	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13061653	13061653	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPRC5A	NM_003979	exon2	c.T470C	p.M157T	TGACCATGAATAG	.	64.0	34.0	81.0	0.0	.	90
GPRC6A	222545	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117114124	117114124	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPRC6A	NM_148963	exon6	c.A1962T	p.P654P	GTCTTGTGGTTCT	.	87.0	45.0	120.0	0.0	.	96
GPSM3	63940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	32159648	32159648	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GPSM3	NM_022107	exon7	c.G183T	p.Q61H	TTCAGTCTGCAGG	.	106.0	21.0	105.0	0.0	.	90
GRAMD2	196996	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	72455799	72455799	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRAMD2	NM_001012642	exon10	c.T764C	p.V255A	GAAGCTACTTGGG	.	85.0	38.0	87.0	0.0	.	90
GRHL2	79977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	102611327	102611327	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRHL2	NM_024915	exon8	c.A1046G	p.E349G	TTGAAGAGATTGC	.	71.0	29.0	69.0	0.0	.	93
GRIA2	2891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	158262575	158262575	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA2	NM_000826	exon12	c.T2004C	p.Y668Y	TGCTTATGGAACA	.	86.0	43.0	82.0	0.0	.	515
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105732861	105732861	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077244	exon5	c.A599T	p.E200V	TAGAAGAACTTGA	.	90.0	41.0	98.0	0.0	.	230
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105769103	105769103	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077244	exon7	c.T835A	p.W279R	GATCGCTGGAAGA	.	143.0	61.0	153.0	0.0	.	230
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105795169	105795169	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077243	exon12	c.A1521G	p.R507R	GGTACGAGAGGAG	.	64.0	31.0	99.0	0.0	.	230
GRIA4	2893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	105795274	105795274	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRIA4	NM_001077243	exon12	c.T1626A	p.P542P	GGATCCTCTGGCC	.	127.0	63.0	128.0	0.0	.	230
GRID2	2895	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	94436432	94436432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRID2	NM_001510	exon13	c.A2063G	p.Y688C	CGGTATATGAGCA	.	80.0	38.0	88.0	0.0	.	159
GRID2IP	392862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6560210	6560210	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145118	exon7	c.A1267T	p.R423W	GCCACCTGTGCTG	.	67.0	28.0	65.0	0.0	.	.
GRK1	6011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	114324036	114324036	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRK1	NM_002929	exon2	c.T734A	p.V245E	TGAAAGTACACAG	.	55.0	32.0	58.0	0.0	.	614
GRXCR1	389207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	43022411	43022411	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GRXCR1	NM_001080476	exon3	c.T668A	p.L223Q	GAGAACTGCAAGA	.	212.0	87.0	277.0	0.0	.	23
GTDC2	84892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43122344	43122344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032806	exon2	c.A580T	p.M194L	CCTCCATGAAGAA	.	70.0	35.0	88.0	0.0	.	.
GTF2IRD2	84163	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	74211994	74211994	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GTF2IRD2	NM_173537	exon16	c.T1857A	p.T619T	GGTGCCAGTGGAG	.	340.0	36.0	386.0	1.0	.	23
GTF3C1	2975	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27509073	27509073	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GTF3C1	NM_001520	exon14	c.A2235G	p.P745P	TCCACTTGGGCCC	.	116.0	53.0	125.0	0.0	.	94
GYS1	2997	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49473817	49473817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	GYS1	NM_002103	exon14	c.A1795G	p.K599E	GGTATTTCCAGTC	.	51.0	27.0	59.0	0.0	.	524
HABP4	22927	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	99250387	99250387	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HABP4	NM_014282	exon7	c.A1016G	p.Y339C	ATGACTATGAGGA	.	67.0	22.0	76.0	0.0	.	91
HARS	3035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140056273	140056273	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HARS	NM_002109	exon10	c.A1160G	p.E387G	ATCCGCTCCACCC	.	76.0	28.0	120.0	0.0	.	92
HAUS1	115106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	43703286	43703286	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HAUS1	NM_138443	exon6	c.A622G	p.M208V	AGAGGCATGGATG	.	190.0	82.0	258.0	0.0	.	91
HCN4	10021	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	73614832	73614832	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HCN4	NM_005477	exon8	c.C3602A	p.S1201Y	AGATTGGATGGCA	.	143.0	65.0	175.0	0.0	.	96
HCRTR2	3062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55142234	55142234	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HCRTR2	NM_001526	exon5	c.A819G	p.S273S	TGTTTCACAGCCT	.	130.0	63.0	161.0	0.0	.	525
HEBP1	50865	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	13140219	13140219	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEBP1	NM_015987	exon3	c.A265T	p.N89Y	CTTCATTGGGGAA	.	126.0	53.0	127.0	0.0	.	135
HECTD4	283450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	112717077	112717077	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001109662	exon9	c.A1210C	p.T404P	ATCGGGTGGCAGA	.	43.0	18.0	65.0	0.0	.	.
HEMGN	55363	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	100698475	100698475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEMGN	NM_197978	exon2	c.G151T	p.E51X	ATGTTTCCTTTTC	.	67.0	21.0	151.0	0.0	.	91
HEMK1	51409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	50615001	50615001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEMK1	NM_016173	exon6	c.A611T	p.Q204L	ATGCTCAGAGGTA	.	88.0	41.0	120.0	0.0	.	278
HEPHL1	341208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	93806484	93806484	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HEPHL1	NM_001098672	exon8	c.C1383G	p.I461M	AGTCATCAAGGCA	.	70.0	34.0	85.0	0.0	.	71
HERPUD2	64224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	35733822	35733822	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HERPUD2	NM_022373	exon2	c.A119T	p.H40L	GATAGATGCGTTT	.	59.0	33.0	73.0	0.0	.	93
HFE	3077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	26091582	26091582	+	Silent	SNP	A	A	G	rs28934595	bycluster;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HFE	NM_139006	exon3	c.A381G	p.Q127Q	AATGCAAGAAGAC	.	176.0	81.0	150.0	0.0	A|1.000;|0.000	90
HFM1	164045	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91859872	91859872	+	Missense_Mutation	SNP	T	T	A	rs201897123	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HFM1	NM_001017975	exon4	c.A272T	p.Q91L	GCAAACTGGAATT	.	170.0	71.0	173.0	0.0	T|0.999;C|0.001	112
HGFAC	3083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3447852	3447852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HGFAC	NM_001528	exon10	c.A1186T	p.R396W	TGCGGCAGGAGGC	.	83.0	41.0	127.0	0.0	.	514
HIP1	3092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	75192502	75192502	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIP1	NM_005338	exon10	c.A869T	p.Q290L	GGCAGCTGGGGGA	.	72.0	31.0	74.0	0.0	.	1085
HIST2H2AC	8338	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	149858769	149858769	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIST2H2AC	NM_003517	exon1	c.G245C	p.R82P	TCCCTCGTCACCT	.	406.0	125.0	220.0	0.0	.	92
HIVEP3	59269	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	41990547	41990547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HIVEP3	NM_024503	exon6	c.G5242A	p.G1748S	CGCGGCCTCGCAC	.	93.0	46.0	108.0	0.0	.	157
HM13	81502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30102430	30102430	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HM13	NM_178581	exon1	c.C76T	p.P26S	CGGCCGCCTTCCA	.	79.0	29.0	68.0	0.0	.	153
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	185902889	185902889	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMCN1	NM_031935	exon11	c.A1761T	p.G587G	TGCTGGAGAGTAT	.	134.0	31.0	72.0	0.0	.	113
HMCN1	83872	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186092186	186092186	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMCN1	NM_031935	exon81	c.A12333G	p.T4111T	CATTACATGGCAT	.	131.0	44.0	63.0	0.0	.	113
HMGN1	3150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	40720227	40720227	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HMGN1	NM_004965	exon4	c.A117T	p.A39A	CGCTGCTGCCTTT	.	80.0	33.0	102.0	0.0	.	658
HNRNPA3	220988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	178081594	178081594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HNRNPA3	NM_194247	exon7	c.A746G	p.Y249C	GAGGCTATGGTGG	.	45.0	20.0	43.0	0.0	.	70
HNRNPR	10236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	23637344	23637344	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	HNRPR,mouth,carcinoma,0	HNRNPR	NM_001102398	exon11	c.G1514T	p.R505I	CCTCCTCTTCCTC	.	50.0	14.0	45.0	0.0	.	24
HOXA13	3209	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	27238961	27238961	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXA13	NM_000522	exon1	c.A736G	p.M246V	CAGGCATGGGCTG	.	83.0	36.0	74.0	0.0	.	658
HOXA2	3199	broad.mit.edu;mdanderson.org	37	7	27141915	27141915	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXA2	NM_006735	exon1	c.G205T	p.A69S	CGCCAGCGCCGTG	.	12.0	7.0	11.0	0.0	.	92
HOXB6	3216	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	46675506	46675506	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXB6	NM_018952	exon3	c.T7A	p.S3T	AATAGGAACTCAT	.	67.0	31.0	68.0	0.0	.	90
HOXC10	3226	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	54379618	54379618	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HOXC10	NM_017409	exon1	c.T575A	p.L192Q	CTCAGCTGGGGGG	.	77.0	41.0	128.0	0.0	.	91
HPS4	89781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26849269	26849269	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HPS4	NM_022081	exon14	c.A2057C	p.Q686P	CCATCCTGAGGGT	.	41.0	20.0	67.0	0.0	.	90
HS3ST4	9951	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	26147136	26147136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HS3ST4	NM_006040	exon2	c.T938G	p.V313G	TTGAGGTGCTGGC	.	110.0	43.0	97.0	0.0	.	67
HTR7	3363	broad.mit.edu;ucsc.edu;mdanderson.org	37	10	92503355	92503355	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HTR7	NM_019859	exon3	c.T1388A	p.L463X	CCTGCTAACCAAT	.	42.0	7.0	85.0	0.0	.	91
HTT	3064	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	3189596	3189596	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HTT	NM_002111	exon39	c.A5208T	p.P1736P	TTTGCCAGAAGAA	.	18.0	13.0	50.0	0.0	.	281
HUS1	3364	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	48008897	48008897	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HUS1	NM_004507	exon6	c.G559T	p.D187Y	CTCCATCTAGGTT	.	40.0	16.0	42.0	0.0	.	1109
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	70995883	70995883	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	HYDIN	NM_001270974	exon38	c.C5947A	p.L1983M	TTTCCAGGCTTTC	.	62.0	34.0	110.0	0.0	.	92
ICA1	3382	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	8167517	8167517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ICA1	NM_022307	exon13	c.A1316T	p.Q439L	GAGGCCTGTAAGT	.	58.0	29.0	68.0	0.0	.	515
IDO1	3620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	39785506	39785506	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IDO1	NM_002164	exon10	c.T1014A	p.A338A	GAAAGCTCTGGTC	.	95.0	48.0	140.0	0.0	.	227
IFNA16	3449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21217242	21217242	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA16	NM_002173	exon1	c.T63C	p.S21S	GCCCAGAGAACAG	.	233.0	61.0	192.0	0.0	.	91
IFNA5	3442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21305011	21305011	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA5	NM_002169	exon1	c.A245C	p.E82A	ATCATCTCATGGA	.	95.0	65.0	95.0	0.0	.	91
IFNA8	3445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21409216	21409216	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNA8	NM_002170	exon1	c.T41A	p.L14H	TGGTGCTCAGCTA	.	70.0	34.0	47.0	0.0	.	90
IFNB1	3456	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	21077590	21077590	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IFNB1	NM_002176	exon1	c.A279C	p.Q93H	TGAATCTTGTCTG	.	70.0	14.0	63.0	1.0	.	155
IGF1R	3480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99478555	99478555	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGF1R	NM_000875	exon17	c.T3197A	p.L1066Q	GATTGCTGGGTGT	.	75.0	35.0	87.0	0.0	.	1490
IGF2R	3482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	160469571	160469571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGF2R	NM_000876	exon18	c.A2510G	p.D837G	AAAAAGATCAGGT	.	49.0	19.0	70.0	0.0	.	118
IGFBP4	3487	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38612731	38612731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGFBP4	NM_001552	exon4	c.A673G	p.K225E	CGTGGCAAGTGCT	.	79.0	39.0	123.0	1.0	.	522
IGLL1	3543	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	23922353	23922353	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGLL1	NM_020070	exon1	c.G25T	p.G9C	CAAGGCCCCCCTG	.	21.0	10.0	16.0	0.0	.	90
IGLON5	402665	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51828607	51828607	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001101372	exon4	c.C399A	p.A133A	CCCTGCCCGCATT	.	46.0	21.0	61.0	0.0	.	.
IGSF1	3547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	130419759	130419759	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGSF1	NM_001555	exon4	c.C361A	p.L121I	ACTCTAGAACTTT	.	40.0	38.0	35.0	0.0	.	133
IGSF22	283284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18743196	18743196	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IGSF22	NM_173588	exon4	c.C264T	p.A88A	CACCCGGGCTCGG	.	26.0	22.0	77.0	0.0	.	140
IKZF1	10320	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	50450343	50450343	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IKZF1	NM_006060	exon5	c.A527T	p.H176L	AATGCCACCTCTG	.	21.0	14.0	17.0	0.0	.	1242
IL12RB1	3594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	18171954	18171954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL12RB1	NM_005535	exon15	c.T1769C	p.I590T	AACTCAATGGCGG	.	268.0	122.0	307.0	0.0	.	91
IL13RA1	3597	ucsc.edu;bcgsc.ca	37	X	117910394	117910394	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL13RA1	NM_001560	exon10	c.A1111G	p.K371E	AGGCTCAAGATTA	.	30.0	5.0	42.0	0.0	.	554
IL1B	3553	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	113593196	113593196	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL1B	NM_000576	exon4	c.48-2A>G	.	TGCCACTGTAATA	.	51.0	23.0	79.0	0.0	.	522
IL21R	50615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27448852	27448852	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL21R	NM_181079	exon5	c.A262T	p.S88C	TCCTGCAGCCTCC	.	65.0	31.0	72.0	0.0	.	660
IL23R	149233	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	67666515	67666515	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL23R	NM_144701	exon5	c.T587A	p.V196D	TTTGGGTCCAAGC	.	196.0	101.0	203.0	0.0	.	90
IL4R	3566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	16	27374493	27374493	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IL4R	NM_000418	exon11	c.C1820G	p.S607X	CCTTCTCAAGCCT	.	40.0	20.0	34.0	0.0	.	227
IMPG2	50939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	100964730	100964730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IMPG2	NM_016247	exon12	c.C1459T	p.H487Y	CAGAATGAAGAGT	.	125.0	59.0	112.0	0.0	.	93
INADL	10207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62456026	62456026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INADL	NM_176877	exon28	c.A3857T	p.E1286V	GAGATGAACTCTT	.	95.0	39.0	76.0	0.0	.	94
INPP4A	3631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	99182502	99182502	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INPP4A	NM_001134224	exon22	c.A2305G	p.N769D	GGGTTTAACGTGC	.	64.0	29.0	72.0	0.0	.	227
INPP4B	8821	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	143007366	143007366	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INPP4B	NM_003866	exon25	c.A2418G	p.L806L	ATTTTCTAGCAAT	.	28.0	15.0	26.0	0.0	.	228
INSR	3643	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	7117093	7117093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INSR	NM_000208	exon22	c.A4123T	p.T1375S	GCAAGGTCAGAAT	.	125.0	51.0	138.0	1.0	.	1381
INTS6	26512	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52025248	52025248	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	INTS6	NM_001039938	exon3	c.A252T	p.G84G	CGTAAGTCCTTCA	.	99.0	45.0	113.0	1.0	.	227
IPO11	51194	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	61811284	61811284	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IPO11	NM_001134779	exon20	c.A1972G	p.M658V	CACAATATGTTGA	.	77.0	36.0	95.0	1.0	.	227
IPO7	10527	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	9446500	9446500	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IPO7	NM_006391	exon11	c.A1181T	p.Q394L	CTGCCCAGACACT	.	57.0	49.0	119.0	0.0	.	271
IRG1	730249	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	13	77527812	77527812	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001258406	exon2	c.G240T	p.V80V	TTTTGTGAACGGT	.	71.0	57.0	68.0	0.0	.	.
IRX4	50805	broad.mit.edu;mdanderson.org	37	5	1878691	1878691	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	IRX4	NM_016358	exon5	c.G952T	p.E318X	GGTCCTCGTCCAG	.	15.0	8.0	12.0	0.0	.	226
ISM2	145501	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77942113	77942113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ISM2	NM_199296	exon7	c.G1541A	p.S514N	TCGGTGCTGATGA	.	37.0	8.0	45.0	0.0	.	91
IST1	9798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	71957226	71957226	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001270976	exon9	c.G834A	p.Q278Q	TTATCAGGCCTTT	.	63.0	53.0	97.0	0.0	.	.
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68624266	68624266	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA11	NM_001004439	exon14	c.G1701A	p.E567E	GTTGTCCTCCAGG	.	104.0	57.0	100.0	0.0	.	538
ITGA11	22801	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68624312	68624312	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA11	NM_001004439	exon14	c.T1655A	p.L552H	TGGTTGAGGTCTC	.	127.0	52.0	123.0	0.0	.	538
ITGA2	3673	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	52369005	52369005	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA2	NM_002203	exon20	c.G2487A	p.L829L	AACGCTGAAAAAT	.	79.0	31.0	80.0	2.0	.	226
ITGA4	3676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182339916	182339916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGA4	NM_000885	exon4	c.T457G	p.Y153D	ATATTTTACATAA	.	125.0	55.0	115.0	0.0	.	230
ITGAD	3681	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31424529	31424529	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGAD	NM_005353	exon16	c.T1958C	p.V653A	CCACCGTCTGTCT	.	70.0	32.0	57.0	1.0	.	226
ITGAD	3681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31419776	31419776	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGAD	NM_005353	exon10	c.A1040T	p.Q347L	CCTTCCAGCACGA	.	58.0	32.0	60.0	0.0	.	226
ITGBL1	9358	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	102250520	102250520	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITGBL1	NM_004791	exon7	c.T886G	p.C296G	TGTAATTGCGGAA	.	56.0	50.0	65.0	0.0	.	92
ITIH4	3700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52860032	52860032	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITIH4	NM_002218	exon7	c.631-2A>T	.	TGAGCCTGGAGGA	.	51.0	17.0	73.0	0.0	.	46
ITPKB	3707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	226835068	226835068	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPKB	NM_002221	exon4	c.A2046T	p.A682A	GGCAGCTGCCTTG	.	17.0	15.0	44.0	0.0	.	230
ITPR1	3708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	4699946	4699946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPR1	NM_001099952	exon13	c.G1135T	p.D379Y	GGAGGTGACAGCC	.	80.0	39.0	100.0	0.0	.	710
ITPR3	3710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	33655094	33655094	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ITPR3	NM_002224	exon45	c.T6167A	p.L2056Q	ATATCCTGGCGCT	.	55.0	28.0	51.0	0.0	.	1085
JAM2	58494	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	27062262	27062262	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	JAM2	NM_021219	exon3	c.T218A	p.V73D	CCTTTGTCTACTA	.	25.0	19.0	35.0	0.0	.	90
JMJD7-PLA2G4B	8681	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42134021	42134021	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	JMJD7-PLA2G4B	NM_005090	exon13	c.A1188T	p.S396S	AGCCTCAGAGCAC	.	78.0	35.0	77.0	0.0	.	135
KANK4	163782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	62733992	62733992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KANK4	NM_181712	exon5	c.C2198T	p.P733L	TCCCCAGGCCCAC	.	56.0	25.0	73.0	0.0	.	74
KAT6B	23522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	76788413	76788413	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_012330	exon18	c.A3831T	p.P1277P	CCCGCCAGAAACA	.	60.0	38.0	51.0	0.0	.	.
KATNAL2	83473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	44589401	44589401	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	KATNAL2,NS,carcinoma,-1	KATNAL2	NM_031303	exon6	c.A392T	p.E131V	CCAGTGAACTTGC	.	56.0	22.0	62.0	0.0	.	93
KBTBD8	84541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	67054509	67054509	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KBTBD8	NM_032505	exon3	c.A1118T	p.K373I	TATCCAAACCATC	.	90.0	48.0	104.0	0.0	.	587
KCNA1	3736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5021211	5021211	+	Missense_Mutation	SNP	A	A	C	rs146948558	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA1	NM_000217	exon2	c.A667C	p.I223L	TTCTTCATCGTGG	.	77.0	43.0	118.0	0.0	A|1.000;G|0.000	228
KCNA3	3738	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	111216504	111216504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA3	NM_002232	exon1	c.C928A	p.L310M	CCAGCAGTTCGAA	.	68.0	33.0	47.0	0.0	.	95
KCNA5	3741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	5154056	5154056	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNA5	NM_002234	exon1	c.C743T	p.S248F	CTGGGTCCGCGCG	.	38.0	19.0	23.0	0.0	.	715
KCNC1	3746	broad.mit.edu;bcgsc.ca	37	11	17801169	17801169	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNC1	NM_001112741	exon3	c.A1671T	p.P557P	GTGCCCACCTGGT	.	36.0	30.0	84.0	2.0	.	91
KCNH7	90134	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	163361126	163361126	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNH7	NM_033272	exon6	c.T955A	p.S319T	AATCTGATGTGGA	.	112.0	48.0	135.0	1.0	.	95
KCNH8	131096	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	19492664	19492664	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNH8	NM_144633	exon10	c.A1593T	p.P531P	CTTTCCAGATGAA	.	52.0	26.0	58.0	0.0	.	524
KCNJ18	100134444	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	21319679	21319679	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001194958	exon3	c.A1025G	p.Y342C	TTGACTACTCGCA	.	67.0	10.0	90.0	0.0	.	.
KCNK10	54207	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	88707163	88707163	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNK10	NM_138318	exon3	c.A404G	p.H135R	AGAGCATGCTGCA	.	32.0	19.0	25.0	0.0	.	95
KCNK13	56659	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	90650791	90650791	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNK13	NM_022054	exon2	c.A671T	p.Y224F	GGAGCTACTTTGA	.	92.0	39.0	105.0	0.0	.	91
KCNT1	57582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	138656968	138656968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCNT1	NM_020822	exon12	c.T1127A	p.L376Q	TGGTCCTGTGTGT	.	62.0	45.0	136.0	0.0	.	137
KCTD19	146212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67325322	67325322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KCTD19	NM_001100915	exon14	c.T2455C	p.Y819H	GTGCATAAAACAT	.	50.0	46.0	136.0	0.0	.	69
KDM4C	23081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	7046860	7046860	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDM4C	NM_001146696	exon16	c.2326-2A>T	.	CCCCCCAGGAATG	.	29.0	27.0	90.0	0.0	.	228
KDR	3791	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55971025	55971025	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDR	NM_002253	exon13	c.T1772G	p.L591R	ATTGGCAGAGGCT	.	95.0	36.0	97.0	1.0	.	2298
KDR	3791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55984967	55984967	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KDR	NM_002253	exon3	c.G162A	p.R54R	CTGTCCCCTGAAA	.	115.0	60.0	121.0	0.0	.	2298
KIAA0556	23247	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	27760972	27760972	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA0556	NM_015202	exon16	c.C2691G	p.H897Q	ACTTCACGAGTCA	.	108.0	54.0	143.0	1.0	.	141
KIAA0586	9786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	58924599	58924599	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA0586	NM_001244189	exon13	c.A1644G	p.Q548Q	AGTACAAAACAAT	.	71.0	33.0	100.0	0.0	.	23
KIAA1024	23251	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	79749742	79749742	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1024	NM_015206	exon2	c.A1253G	p.K418R	TGCCAAAGGATCA	.	191.0	86.0	216.0	0.0	.	183
KIAA1109	84162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123113385	123113385	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1109	NM_015312	exon9	c.A903T	p.G301G	TATAGGACTTGTT	.	110.0	54.0	95.0	0.0	.	80
KIAA1324L	222223	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	86571334	86571334	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1324L	NM_001142749	exon5	c.T741C	p.S247S	ACTTACAGAATGA	.	85.0	34.0	106.0	0.0	.	97
KIAA1429	25962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	95501074	95501074	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1429	NM_015496	exon24	c.C5299A	p.P1767T	CCCGAGGACTTGG	.	66.0	35.0	109.0	0.0	.	92
KIAA1549L	25758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	33564933	33564933	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_012194	exon1	c.A933G	p.S311S	TGTCTCATCTCCC	.	175.0	70.0	185.0	0.0	.	.
KIAA1551	55196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	32137547	32137547	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018169	exon4	c.A3658T	p.R1220X	GGAGAGAGAACTT	.	72.0	27.0	83.0	0.0	.	.
KIAA1671	85379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25581013	25581013	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1671	NM_001145206	exon9	c.A5269G	p.S1757G	CCCAAGAGCCCCA	.	106.0	40.0	139.0	0.0	.	69
KIAA1751	85452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1888169	1888169	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1751	NM_001080484	exon17	c.A1906T	p.T636S	GAGACGTGGTCTC	.	100.0	47.0	133.0	0.0	.	69
KIAA1751	85452	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1900247	1900247	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1751	NM_001080484	exon11	c.A1072G	p.R358G	GCTTTCTGAGCTT	.	43.0	21.0	51.0	0.0	.	69
KIAA1919	91749	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111587712	111587712	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1919	NM_153369	exon4	c.A947G	p.D316G	TTTTTGACAAGAA	.	82.0	36.0	102.0	1.0	.	93
KIAA1919	91749	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	111587672	111587672	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1919	NM_153369	exon4	c.A907G	p.I303V	AGCAACATTGGCA	.	91.0	44.0	113.0	0.0	.	93
KIAA1967	57805	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	22476767	22476767	+	Missense_Mutation	SNP	C	C	G	rs201420827	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIAA1967	NM_021174	exon20	c.C2626G	p.R876G	ACCGCCCGGACGG	.	28.0	11.0	58.0	0.0	C|0.999;T|0.000	92
KIF16B	55614	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	16485049	16485049	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF16B	NM_001199865	exon10	c.A1144T	p.R382X	TCAGTCTGGCTAT	.	114.0	51.0	143.0	0.0	.	291
KIF17	57576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	21013989	21013989	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF17	NM_020816	exon8	c.A1830G	p.L610L	CAGGCCTAGTAAC	.	62.0	29.0	65.0	0.0	.	94
KIF19	124602	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	72351335	72351335	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF19	NM_153209	exon20	c.T2881C	p.S961P	GACTCCTCACCCC	.	47.0	14.0	58.0	2.0	.	90
KIF20B	9585	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91469185	91469185	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF20B	NM_016195	exon4	c.A318G	p.S106S	AAGCTCAGGGCAG	.	69.0	53.0	174.0	1.0	.	93
KIF21A	55605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	12	39727052	39727052	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF21A	NM_001173464	exon18	c.A2449T	p.R817X	GGTTTCTTTTTTG	.	126.0	41.0	111.0	0.0	.	97
KIF26B	55083	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	245850542	245850542	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF26B	NM_018012	exon12	c.A4257T	p.T1419T	CCCCACATTAGCC	.	38.0	30.0	85.0	1.0	.	25
KIF27	55582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86495242	86495242	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF27	NM_017576	exon11	c.A2613T	p.A871A	AATTACTGCATCC	.	66.0	18.0	72.0	0.0	.	523
KIF5A	3798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	57970570	57970570	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF5A	NM_004984	exon20	c.T2225A	p.L742Q	TAGAGCTAGAGAA	.	61.0	25.0	72.0	0.0	.	517
KIF5C	3800	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	149633250	149633250	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KIF5C	NM_004522	exon1	c.G64A	p.E22K	GAAGCGGAGATCC	.	208.0	98.0	221.0	1.0	.	69
KLC2	64837	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	66030441	66030441	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLC2	NM_022822	exon5	c.A686G	p.E229G	ACCTGGAGAAGAC	.	66.0	10.0	86.0	0.0	.	90
KLHL1	57626	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	70535471	70535471	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL1	NM_020866	exon3	c.T786C	p.A262A	CCAGAGAGCATTG	.	77.0	29.0	92.0	0.0	.	90
KLHL28	54813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	45414552	45414552	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL28	NM_017658	exon2	c.A580T	p.T194S	CTTCGGTAGCTAC	.	108.0	49.0	97.0	0.0	.	91
KLHL35	283212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75139660	75139660	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039548	exon2	c.T893C	p.L298P	TCAGCTAGGTCCA	.	31.0	17.0	37.0	0.0	.	.
KLHL38	340359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	124664565	124664565	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLHL38	NM_001081675	exon1	c.T602C	p.M201T	CAAACCATGAGGG	.	80.0	36.0	88.0	0.0	.	68
KLRAP1	10748	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10746500	10746500	+	RNA	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KLRAP1	.	.	.	.	ATGATCTACAATG	.	101.0	39.0	101.0	0.0	.	90
KNDC1	85442	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	135013094	135013094	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KNDC1	NM_152643	exon15	c.C2891G	p.S964X	AGGCGTCACCCTC	.	30.0	23.0	69.0	0.0	.	229
KPNA5	3841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117047735	117047735	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KPNA5	NM_002269	exon12	c.A1203T	p.A401A	AGAAGCAGCTTGG	.	134.0	63.0	216.0	0.0	.	290
KPTN	11133	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	47986778	47986778	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KPTN	NM_007059	exon2	c.T290A	p.V97E	ATCCCCACAACCA	.	80.0	27.0	110.0	0.0	.	91
KRBA1	84626	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	149420891	149420891	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRBA1	.	.	.	.	AGCTCCCCGAGGC	.	102.0	45.0	153.0	0.0	.	91
KRT1	3848	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53069400	53069400	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT1	NM_006121	exon9	c.T1512G	p.S504S	GCTCACAGCTGCA	.	66.0	36.0	88.0	1.0	.	92
KRT15	3866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39673060	39673060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT15	NM_002275	exon3	c.G738T	p.E246D	TCTCACCTCTTCG	.	40.0	14.0	45.0	0.0	.	90
KRT24	192666	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	38855854	38855854	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT24	NM_019016	exon6	c.A1203G	p.S401S	AATTTCTGACAGC	.	73.0	29.0	68.0	0.0	.	90
KRT32	3882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39619248	39619248	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT32	NM_002278	exon6	c.C1051G	p.L351V	GGGCCAGCTGGGA	.	76.0	39.0	71.0	0.0	.	90
KRT3	3850	broad.mit.edu;ucsc.edu;mdanderson.org	37	12	53189820	53189820	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT3	NM_057088	exon1	c.A7T	p.R3X	CTTGTCTGCTCAT	.	19.0	6.0	33.0	0.0	.	90
KRT35	3886	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39635633	39635633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT35	NM_002280	exon3	c.A677G	p.E226G	AGCTCCTCCTTCA	.	104.0	44.0	89.0	1.0	.	92
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39137242	39137242	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_182497	exon6	c.G849A	p.Q283Q	ACTGACCTGAACA	.	103.0	48.0	85.0	0.0	.	.
KRT40	125115	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39140425	39140425	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_182497	exon3	c.T101A	p.L34H	CCGGGGAGACAAG	.	83.0	36.0	110.0	0.0	.	.
KRT6C	286887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52862953	52862953	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT6C	NM_173086	exon9	c.A1588T	p.S530C	CACTGCTGGAACT	.	122.0	56.0	133.0	0.0	.	114
KRT72	140807	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52979933	52979933	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT72	NM_001146225	exon9	c.G1369T	p.G457W	CTGCCCCAGCATT	.	51.0	24.0	58.0	0.0	.	96
KRT73	319101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53010081	53010081	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT73	NM_175068	exon2	c.T531C	p.N177N	CAGGTTATTCTTG	.	88.0	49.0	121.0	0.0	.	157
KRT77	374454	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53086355	53086355	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT77	NM_175078	exon7	c.A1277G	p.Q426R	AGCTTCTGCCACG	.	43.0	21.0	43.0	0.0	.	187
KRT81	3887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	52682242	52682242	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT81	NM_002281	exon5	c.640-2A>G	.	ACATCCTGGAAAG	.	84.0	39.0	88.0	0.0	.	90
KRT86	3892	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	52698804	52698804	+	Missense_Mutation	SNP	A	A	G	rs202150817		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT86	NM_002284	exon4	c.A728G	p.Y243C	GGCTGTATGAGGA	.	57.0	24.0	77.0	0.0	A|0.999;G|0.000	91
KRT9	3857	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39728014	39728014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRT9	NM_000226	exon1	c.T231C	p.S77S	ACCCCCAGATCCT	.	151.0	52.0	162.0	0.0	.	92
KRTAP10-4	386672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	45994365	45994365	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP10-4	NM_198687	exon1	c.T730C	p.S244P	GTGTGCTCTGAGG	.	34.0	14.0	33.0	0.0	.	90
KRTAP11-1	337880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	32253723	32253723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KRTAP11-1	NM_175858	exon1	c.T121G	p.C41G	GCAAACAGATGCC	.	109.0	45.0	113.0	0.0	.	91
KRTAP12-2	353323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	46086475	46086475	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_181684	exon1	c.G329T	p.C110F	GGCCTGCAGCTCA	.	68.0	23.0	88.0	0.0	.	.
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39464596	39464596	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001146182	exon1	c.T910A	p.C304S	AGACACAACAAGA	.	60.0	24.0	68.0	0.0	.	.
KRTAP16-1	100505753	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	17	39465344	39465344	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001146182	exon1	c.T162G	p.C54W	TGGCCCACAGCTG	.	191.0	84.0	168.0	0.0	.	.
KRTAP5-4	387267	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	1642911	1642911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001012709	exon1	c.A413G	p.Q138R	CTGCACTGGGAGC	.	39.0	31.0	111.0	0.0	.	.
KRTAP9-1	728318	bcgsc.ca;mdanderson.org	37	17	39346262	39346262	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001190460	exon1	c.T124G	p.C42G	CCCTCCTGCTGTG	.	27.0	13.0	38.0	0.0	.	.
KRTAP9-9	81870	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	39411764	39411764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_030975	exon1	c.T127A	p.C43S	AGCTGCTGCCAGC	.	37.0	18.0	49.0	0.0	.	.
KSR2	283455	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	118298200	118298200	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	KSR2	NM_173598	exon2	c.T130C	p.C44R	TTTTGCAGGACAG	.	34.0	17.0	43.0	0.0	.	1449
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129498936	129498936	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon10	c.G1392T	p.P464P	CTACCCGGACTGC	.	110.0	47.0	149.0	0.0	.	162
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129618940	129618940	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon21	c.T2967A	p.P989P	CCAACCTGGAGTC	.	50.0	26.0	83.0	0.0	.	162
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129636779	129636779	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon25	c.A3714T	p.P1238P	ACTTCCAGAACAA	.	73.0	30.0	89.0	0.0	.	162
LAMA2	3908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	129823895	129823895	+	Missense_Mutation	SNP	A	A	T	rs202202014	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMA2	NM_000426	exon59	c.A8336T	p.D2779V	CATTTGATGACAC	.	75.0	30.0	98.0	0.0	A|0.999;G|0.000	162
LAMC1	3915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	183102629	183102629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LAMC1	NM_002293	exon22	c.G3793T	p.V1265L	AAAGCTGTGGAGA	.	165.0	44.0	86.0	0.0	.	252
LCA5	167691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	80223068	80223068	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCA5	NM_001122769	exon3	c.G581T	p.S194I	AGTTCACTTTCTG	.	148.0	64.0	187.0	0.0	.	90
LCE2D	353141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152636872	152636872	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCE2D	NM_178430	exon2	c.T291C	p.S97S	ACCTTCTGGGGCC	.	137.0	24.0	73.0	0.0	.	68
LCK	3932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	32742349	32742349	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LCK	NM_005356	exon9	c.A926T	p.Q309L	TCACCCAGGAGCC	.	45.0	31.0	60.0	0.0	.	1378
LDLRAD2	401944	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	22141096	22141096	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LDLRAD2	NM_001013693	exon2	c.C291A	p.N97K	GCTCAACACCTCC	.	90.0	47.0	74.0	0.0	.	90
LDLRAD3	143458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36057758	36057758	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LDLRAD3	NM_174902	exon2	c.G152T	p.G51V	GTGACGGGCTGCC	.	44.0	21.0	54.0	0.0	.	90
LEKR1	389170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	156742645	156742645	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LEKR1	NM_001004316	exon11	c.A1300G	p.I434V	CTTGATATTGAAA	.	373.0	132.0	398.0	2.0	.	68
LEPREL1	55214	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	189691795	189691795	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LEPREL1	NM_001134418	exon11	c.910-2A>T	.	ATTCCCTGGAAGC	.	91.0	42.0	120.0	0.0	.	155
LGR6	59352	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	202287908	202287908	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LGR6	NM_001017403	exon18	c.T2477A	p.L826Q	CACTGCTGTACCT	.	16.0	15.0	50.0	0.0	.	160
LHCGR	3973	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	48925836	48925836	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LHCGR	NM_000233	exon9	c.A784T	p.R262X	TTTCTCTTGATGG	.	58.0	23.0	65.0	1.0	.	589
LHX2	9355	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	9	126794984	126794984	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LHX2	NM_004789	exon5	c.T1219C	p.X407Q	CTTTTCTAATGAC	.	72.0	57.0	157.0	0.0	.	90
LIM2	3982	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	51885739	51885739	+	Missense_Mutation	SNP	G	G	T	rs201810597	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LIM2	NM_030657	exon3	c.C384A	p.F128L	ATGAGCGAAGGCC	.	37.0	16.0	63.0	0.0	G|0.999;A|0.000	90
LIN28A	79727	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	26751824	26751824	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LIN28A	NM_024674	exon3	c.T259A	p.L87M	CGGAGCTTGAAGG	.	153.0	54.0	171.0	2.0	.	226
LINC00152	112597	broad.mit.edu;mdanderson.org	37	2	87820742	87820742	+	RNA	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	AGATGAAACAGGA	.	248.0	109.0	276.0	0.0	.	.
LMAN1L	79748	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	75111520	75111520	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LMAN1L	NM_021819	exon6	c.A625T	p.S209C	ACTCCCAGTGATC	.	56.0	20.0	69.0	0.0	.	90
LPAR3	23566	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	85331282	85331282	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPAR3	NM_012152	exon2	c.T522G	p.S174S	GCAGGCAGAGATG	.	98.0	39.0	99.0	0.0	.	502
LPHN3	23284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	62758609	62758609	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPHN3	NM_015236	exon7	c.A1512T	p.R504R	AGCCCGAGAAATC	.	59.0	26.0	99.0	0.0	.	508
LPIN3	64900	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	39978721	39978721	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPIN3	NM_022896	exon7	c.C786G	p.S262S	CGAGTCCTCAGTG	.	81.0	29.0	82.0	0.0	.	93
LPPR4	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	99771914	99771914	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LPPR4	NM_014839	exon7	c.1640delC	p.S547fs	GCACCTCCCCCAA	.	69.0	36.0	101.0	0.0	.	93
LRCH1	23143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	47302989	47302989	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRCH1	NM_001164211	exon18	c.A1877G	p.E626G	GCATTGAGATGAG	.	58.0	23.0	81.0	0.0	.	91
LRIT1	26103	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	85991913	85991913	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRIT1	NM_015613	exon4	c.T1642A	p.C548S	TGCAGCAGACAAG	.	95.0	36.0	88.0	0.0	.	90
LRP1B	53353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	141528495	141528495	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP1B	NM_018557	exon34	c.T5581A	p.C1861S	CTGTACACATACA	.	66.0	18.0	96.0	0.0	.	311
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170063518	170063518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP2	NM_004525	exon39	c.G6712A	p.G2238S	CCAAGCCCCGTGG	.	150.0	65.0	152.0	0.0	.	175
LRP2	4036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170097673	170097673	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRP2	NM_004525	exon25	c.T3870C	p.C1290C	CCGATCACAGAGC	.	99.0	48.0	94.0	0.0	.	175
LRRC10	376132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	70004105	70004105	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC10	NM_201550	exon1	c.A514G	p.I172V	GCCAGATGGTCCT	.	48.0	21.0	44.0	0.0	.	514
LRRC36	55282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	67375858	67375858	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC36	NM_018296	exon2	c.71-2A>C	.	CTTTTCAGAACTG	.	34.0	30.0	68.0	0.0	.	90
LRRC40	55631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70616864	70616864	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC40	NM_017768	exon13	c.A1464C	p.P488P	TTCTTCTGGCAAA	.	240.0	97.0	244.0	0.0	.	91
LRRC4	64101	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	127670231	127670231	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC4	NM_022143	exon2	c.C463T	p.R155C	TGTTGCGAAGCCA	.	41.0	17.0	61.0	0.0	.	154
LRRC57	255252	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42839595	42839595	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC57	NM_153260	exon4	c.A356T	p.Q119L	CCCAGTTGGTTCC	.	80.0	42.0	89.0	0.0	.	90
LRRC7	57554	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	70502271	70502271	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRC7	NM_020794	exon18	c.C2138T	p.A713V	CAACAGCTAAAGA	.	132.0	61.0	115.0	1.0	.	163
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	91792827	91792827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001161528	exon1	c.T1690G	p.C564G	TACAGCATAAAAT	.	177.0	79.0	200.0	0.0	.	.
LRRD1	401387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	91794336	91794336	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001161528	exon1	c.A181T	p.R61X	TCTGTCTAGGATG	.	76.0	31.0	91.0	0.0	.	.
LRRIQ4	344657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	169539921	169539921	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001080460	exon1	c.A212G	p.K71R	GTTTAAAGAACAT	.	112.0	45.0	107.0	0.0	.	.
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	101605833	101605833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRK1	NM_024652	exon32	c.A5191G	p.M1731V	CCCTACATGGCCC	.	55.0	27.0	71.0	0.0	.	602
LRRK1	79705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	101598240	101598240	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LRRK1	NM_024652	exon29	c.T4573A	p.F1525I	CCGACTTTTGCCA	.	55.0	24.0	80.0	0.0	.	602
LRRTM1	347730	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	80529619	80529619	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	LRRTM1,NS,carcinoma,0	LRRTM1	NM_178839	exon2	c.G1326T	p.V442V	CAGGACCACGATG	.	27.0	10.0	37.0	0.0	.	73
LTBP2	4053	broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	75078477	75078477	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LTBP2	NM_000428	exon1	c.G171A	p.G57G	GCTGCCCCCAGGG	.	23.0	7.0	22.0	0.0	.	92
LTBP2	4053	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75019087	75019087	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LTBP2	NM_000428	exon6	c.A1202T	p.Q401L	GGGATCTGGCAGA	.	23.0	12.0	26.0	0.0	.	92
LUM	4060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	91502590	91502590	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LUM	NM_002345	exon2	c.T167A	p.L56Q	AATTTCAGCTCAT	.	59.0	24.0	82.0	0.0	.	514
LY9	4063	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160783584	160783584	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LY9	NM_001261457	exon3	c.T613C	p.S205P	GGAGGCTCCATTC	.	413.0	143.0	205.0	1.0	.	91
LY9	4063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160784286	160784286	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LY9	NM_001261457	exon4	c.T807G	p.L269L	GCCACTTGCACTC	.	190.0	138.0	122.0	0.0	.	91
LYPD3	27076	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43969695	43969695	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LYPD3	NM_014400	exon1	c.A29T	p.Q10L	ATGGCCTGGGCAC	.	27.0	8.0	25.0	0.0	.	91
LYPD4	147719	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	42342129	42342129	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LYPD4	NM_173506	exon4	c.T418G	p.C140G	AGCTACAGGACGC	.	97.0	45.0	117.0	0.0	.	91
LZTS1	11178	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	20110758	20110758	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	LZTS1	NM_021020	exon2	c.G684A	p.K228K	CAGAGCCTTCAGG	.	15.0	13.0	46.0	1.0	.	91
MACC1	346389	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	20193914	20193914	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MACC1	NM_182762	exon6	c.T2248A	p.W750R	CCCTCCAGCCTTT	.	98.0	46.0	94.0	0.0	.	93
MAGEC2	51438	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	141291576	141291576	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAGEC2	NM_016249	exon3	c.T198A	p.P66P	CTCCTCAGGACCA	.	37.0	34.0	44.0	0.0	.	193
MAP1B	4131	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	71494454	71494454	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP1B	NM_005909	exon5	c.G5272C	p.D1758H	CCCAGAGATATGT	.	49.0	18.0	63.0	0.0	.	155
MAP2K2	5605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4117490	4117490	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP2K2	NM_030662	exon2	c.A230G	p.E77G	CCCAGCTCTGAGA	.	55.0	16.0	70.0	0.0	.	510
MAP3K4	4216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	161523729	161523729	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAP3K4	NM_006724	exon18	c.3626-2A>T	.	TCCTGCAGAACCA	.	307.0	149.0	396.0	0.0	.	548
MAPK7	5598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	19286534	19286534	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MAPK7	NM_002749	exon7	c.A2441T	p.Q814L	ACCTCCAGGACCC	.	36.0	17.0	61.0	0.0	.	1402
MARCH4	57574	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	217124264	217124264	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MARCH4	NM_020814	exon4	c.G1004T	p.R335L	GAGGTCCGGGGGT	.	89.0	34.0	114.0	0.0	.	69
MBOAT1	154141	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	20124804	20124804	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MBOAT1	NM_001080480	exon8	c.A742T	p.T248S	CCAAGGTGATGCC	.	184.0	72.0	171.0	2.0	.	68
MCAM	4162	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	119185904	119185904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCAM	NM_006500	exon2	c.T137G	p.L46R	CACTTCAGAAGGG	.	19.0	10.0	36.0	0.0	.	137
MCFD2	90411	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	47134956	47134956	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCFD2	NM_001171506	exon4	c.A302G	p.H101R	TCCTTATGGACAT	.	36.0	18.0	46.0	0.0	.	90
MCM10	55388	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	13217598	13217598	+	Missense_Mutation	SNP	A	A	T	rs138161730	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM10	NM_182751	exon6	c.A684T	p.R228S	AACTAGAGGTCAA	.	136.0	65.0	150.0	0.0	A|0.999;G|0.000	653
MCM3	4172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	52129386	52129386	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM3	NM_002388	exon17	c.A2562T	p.X854C	GCCTCCTCAGATG	.	56.0	28.0	66.0	0.0	.	228
MCM3AP	8888	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	47686993	47686993	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCM3AP	NM_003906	exon10	c.A2692T	p.I898F	GAAAGATGGTAGA	.	44.0	36.0	101.0	1.0	.	291
MCTP2	55784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	94913364	94913364	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MCTP2	NM_001159643	exon11	c.G1537A	p.V513M	CTACAAGTGAAGG	.	106.0	20.0	119.0	0.0	.	93
MDC1	9656	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30671686	30671686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDC1	NM_014641	exon10	c.G5274T	p.W1758C	TGCTCCCCATCTT	.	65.0	24.0	80.0	1.0	.	273
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	90371171	90371171	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDN1	NM_014611	exon88	c.A14692G	p.T4898A	TGTCGGTGTCCTC	.	103.0	39.0	130.0	0.0	.	100
MDN1	23195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90371808	90371808	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MDN1	NM_014611	exon87	c.G14563T	p.E4855X	TTACCTCATCTAT	.	64.0	29.0	60.0	0.0	.	100
MEGF11	84465	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	66222097	66222097	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEGF11	NM_032445	exon12	c.T1533A	p.T511T	GCCAGGAGTGCAG	.	98.0	36.0	105.0	0.0	.	69
MEP1A	4224	hgsc.bcm.edu;ucsc.edu;mdanderson.org	37	6	46801092	46801092	+	Nonsense_Mutation	SNP	A	A	T	rs12197930	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEP1A	NM_005588	exon11	c.A1426T	p.R476X	AATAGCAGAGAAA	.	37.0	15.0	55.0	0.0	A|0.957;G|0.043	183
METAP2	10988	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	95905678	95905678	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METAP2	NM_006838	exon9	c.A972C	p.P324P	GAAACCAATCCGT	.	55.0	17.0	69.0	0.0	.	90
METTL13	51603	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171759656	171759656	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METTL13	NM_015935	exon5	c.A1374T	p.A458A	CCCTGCAGCCCCG	.	500.0	336.0	319.0	0.0	.	91
METTL21C	196541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	103343193	103343193	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	METTL21C	NM_001010977	exon2	c.A252G	p.I84M	ACTCTCTATGGAT	.	125.0	114.0	105.0	0.0	.	90
MEX3B	84206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	82336831	82336831	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MEX3B	NM_032246	exon2	c.T380C	p.I127T	GAGATGATCTCCC	.	31.0	14.0	34.0	0.0	.	226
MFSD6L	162387	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	8700730	8700730	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MFSD6L	NM_152599	exon1	c.G1709A	p.G570E	TCTGTCCCCTGCT	.	28.0	27.0	45.0	0.0	.	90
MGAT4C	25834	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	86373569	86373569	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MGAT4C	NM_013244	exon7	c.T935A	p.M312K	TAGCCCATGTGCT	.	68.0	24.0	81.0	0.0	.	93
MIB1	57534	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	19345790	19345790	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIB1	NM_020774	exon2	c.T287A	p.I96N	TTGGCATTCGATG	.	49.0	32.0	59.0	0.0	.	526
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	22	38318312	38318312	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MICALL1	NM_033386	exon6	c.C903A	p.P301P	CCGCCCCACCCCT	.	23.0	12.0	20.0	0.0	.	153
MIIP	60672	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12082339	12082339	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIIP	NM_021933	exon3	c.A302T	p.Q101L	AATGCCAGCACCA	.	86.0	51.0	128.0	0.0	.	91
MILR1	284021	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	62462756	62462756	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	TGTTCCAGGAGGT	.	89.0	41.0	85.0	2.0	.	.
MIOS	54468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	7612424	7612424	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MIOS	NM_019005	exon4	c.A318G	p.K106K	AGGAAAAGAGTTT	.	89.0	36.0	87.0	0.0	.	90
MIR517A	574479	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	54215574	54215574	+	RNA	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	AGAAAAGATCGTG	.	56.0	25.0	68.0	0.0	.	.
MKL2	57496	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	14340581	14340581	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MKL2	NM_014048	exon12	c.A1464T	p.T488T	ACCTACAGGAACC	.	68.0	36.0	83.0	0.0	.	95
MLH3	27030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	75516322	75516322	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLH3	NM_014381	exon2	c.T37C	p.L13L	AACGCAATTTGGC	.	64.0	36.0	79.0	0.0	.	228
MLL2	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	49420043	49420043	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLL2	NM_003482	exon48	c.A15706C	p.N5236H	GCCCGTTGTTCTC	.	94.0	45.0	98.0	0.0	.	612
MLL4	8085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	36221017	36221017	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLL4	NM_014727	exon23	c.G5067C	p.L1689L	TCTCCTGGATGGC	.	113.0	55.0	157.0	0.0	.	697
MLLT3	4300	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	20413886	20413886	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MLLT3	NM_004529	exon5	c.T958A	p.C320S	CAGAACAAGTGAG	.	103.0	47.0	126.0	0.0	.	660
MME	4311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	154889935	154889935	+	Silent	SNP	C	C	A	rs201494121	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MME	NM_007287	exon21	c.C2010A	p.G670G	GAATGGCGAAGAA	.	358.0	166.0	370.0	1.0	.	516
MMP10	4319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	102642848	102642848	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP10	NM_002425	exon10	c.1227-2A>T	.	CAAATCTAAACCA	.	53.0	17.0	55.0	0.0	.	713
MMP12	4321	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102742328	102742328	+	RNA	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP12	.	.	.	.	ACCTCCTGAATGT	.	54.0	25.0	78.0	0.0	.	226
MMP14	4323	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23312529	23312529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP14	NM_004995	exon5	c.G752T	p.S251I	ATTCCAGTGACCC	.	44.0	15.0	53.0	0.0	.	226
MMP16	4325	broad.mit.edu;bcgsc.ca	37	8	89068495	89068495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP16	NM_005941	exon8	c.T1234C	p.W412R	ACACCCAATATTT	.	99.0	7.0	103.0	0.0	.	231
MMP24	10893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	33839777	33839777	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_006690	exon3	c.C465A	p.R155R	CAAGCGCTATGCC	.	67.0	33.0	87.0	0.0	.	.
MMP7	4316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	102394039	102394039	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MMP7	NM_002423	exon5	c.A707T	p.Y236F	TTTCCATAGGTTG	.	77.0	20.0	95.0	0.0	.	651
MOG	4340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29627246	29627246	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOG	NM_001008229	exon2	c.A239T	p.Y80F	ATCTCTACAGAAA	.	131.0	62.0	147.0	2.0	.	515
MORC2	22880	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31333654	31333654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MORC2	NM_014941	exon16	c.T1228C	p.S410P	TGGCAGAGAGGTA	.	44.0	19.0	38.0	0.0	.	92
MOS	4342	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	57026368	57026368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOS	NM_005372	exon1	c.G174T	p.E58D	CACCTGCTCCCAG	.	52.0	28.0	66.0	0.0	.	1403
MOV10L1	54456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	50599429	50599429	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MOV10L1	NM_018995	exon26	c.A3499G	p.T1167A	AGTATTACAAACG	.	115.0	41.0	147.0	0.0	.	93
MPHOSPH8	54737	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	20220900	20220900	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MPHOSPH8	NM_017520	exon3	c.A687T	p.K229N	AAAGAAAGTTAAA	.	152.0	57.0	169.0	0.0	.	68
MPO	4353	broad.mit.edu;ucsc.edu;mdanderson.org	37	17	56357776	56357776	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MPO	NM_000250	exon2	c.G199T	p.E67X	CCTCCTCCATGGA	.	165.0	75.0	191.0	1.0	.	156
MRC2	9902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	60744225	60744225	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRC2	NM_006039	exon5	c.G967T	p.E323X	AACTGGGAGAGTG	.	79.0	37.0	98.0	0.0	.	117
MRGPRE	116534	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	3249418	3249418	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRGPRE	NM_001039165	exon2	c.G612T	p.E204D	GCCTCGCTCCACC	.	17.0	15.0	42.0	0.0	.	136
MROH7	374977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	55174688	55174688	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039464	exon23	c.G3669A	p.G1223G	TCAAGGGTCCCTG	.	46.0	28.0	76.0	0.0	.	.
MROH7	374977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	55119680	55119680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039464	exon3	c.A1081T	p.K361X	GATGCCAAGGACA	.	95.0	53.0	121.0	0.0	.	.
MROH8	140699	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	35802476	35802476	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	AATCACTGTCATA	.	61.0	25.0	49.0	0.0	.	.
MRPL30	51263	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	99812077	99812077	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MRPL30	NM_145212	exon6	c.A395G	p.E132G	CAGAGGAGAACAT	.	127.0	59.0	142.0	0.0	.	91
MST1R	4486	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	49924915	49924915	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MST1R	NM_002447	exon20	c.A4028T	p.Q1343L	ACTATCTGCTCCA	.	90.0	38.0	123.0	0.0	.	1406
MTF1	4520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	38288109	38288109	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTF1	NM_005955	exon9	c.A1451G	p.E484G	AGAAACTCTTGAT	.	55.0	28.0	81.0	0.0	.	92
MTHFD1	4522	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	64886605	64886605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTHFD1	NM_005956	exon8	c.G689T	p.G230V	AACCTGGGGCAAT	.	87.0	47.0	106.0	0.0	.	92
MTIF2	4528	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55479663	55479663	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTIF2	NM_002453	exon8	c.G791T	p.G264V	ATCACTCCATCAT	.	171.0	85.0	143.0	0.0	.	91
MTMR1	8776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	149867740	149867740	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTMR1	NM_003828	exon2	c.A219G	p.S73S	AGGTTCAGTGACA	.	32.0	30.0	45.0	0.0	.	131
MTMR8	55613	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	63490847	63490847	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTMR8	NM_017677	exon13	c.G1588C	p.D530H	GCACATCTGTCTC	.	91.0	86.0	120.0	0.0	.	195
MTRR	4552	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	7878172	7878172	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MTRR	NM_024010	exon5	c.G598T	p.A200S	TCACCTGCATCCT	.	38.0	20.0	71.0	0.0	.	91
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9062263	9062263	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A25183G	p.I8395V	TGGATATGGAAAC	.	54.0	30.0	52.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9067175	9067175	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.T20271A	p.T6757T	GGATGTAGTTGGT	.	58.0	27.0	84.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9067507	9067507	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A19939G	p.I6647V	TCTCAATCCTTGT	.	90.0	42.0	96.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9069194	9069194	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.C18252T	p.A6084A	CACCAGGGCGGTG	.	111.0	56.0	111.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9071260	9071260	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.A16186T	p.S5396C	TGCTGCTCAAATT	.	96.0	42.0	100.0	0.0	.	566
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9077042	9077042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC16	NM_024690	exon3	c.C10404A	p.D3468E	GCCTTGGTCTCCA	.	47.0	27.0	55.0	0.0	.	566
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100674961	100674961	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC17	NM_001040105	exon3	c.C264A	p.N88K	CACCAACCCTGAG	.	113.0	61.0	116.0	0.0	.	95
MUC17	140453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100685847	100685847	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC17	NM_001040105	exon3	c.C11150A	p.P3717H	CAACACCTTCTGT	.	29.0	12.0	32.0	0.0	.	95
MUC21	394263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30955029	30955029	+	Silent	SNP	A	A	T	rs41288693		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC21	NM_001010909	exon2	c.A1077T	p.T359T	CAGCACAGCCACC	.	35.0	13.0	29.0	0.0	.	92
MUC2	4583	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	1083817	1083817	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC2	NM_002457	exon18	c.C2349A	p.S783R	CCTCAGCTGCCAG	.	22.0	20.0	72.0	0.0	.	90
MUC4	4585	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195511219	195511219	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MUC4	NM_018406	exon2	c.C7232T	p.T2411I	TGACCTGTGGATG	.	319.0	40.0	339.0	0.0	.	90
MUC5B	727897	broad.mit.edu;bcgsc.ca	37	11	1261069	1261069	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_002458	exon28	c.T3624C	p.N1208N	CTTCAATGAGGAC	.	22.0	21.0	43.0	1.0	.	.
MYBPC3	4607	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	47372124	47372124	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYBPC3	NM_000256	exon3	c.A335T	p.E112V	GTGGCCTCAGCAG	.	188.0	78.0	251.0	1.0	.	92
MYCBP2	23077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	77844588	77844588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCBP2	NM_015057	exon6	c.G1031A	p.G344D	TTAATGCCATTAC	.	148.0	62.0	155.0	0.0	.	236
MYCBPAP	84073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48597032	48597032	+	Missense_Mutation	SNP	T	T	A	rs183786523	by1000genomes;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCBPAP	NM_032133	exon7	c.T929A	p.L310Q	GTCGACTGGAATA	.	82.0	45.0	109.0	0.0	T|1.000;C|0.000	230
MYCT1	80177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	153043211	153043211	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYCT1	NM_025107	exon2	c.T531A	p.P177P	ACTTCCTGTGGAA	.	77.0	32.0	85.0	0.0	.	91
MYH1	4619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	10416941	10416941	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH1	NM_005963	exon10	c.805+2T>A	.	TTACTCACATGTT	.	44.0	39.0	106.0	0.0	.	171
MYH15	22989	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108147647	108147647	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH15	NM_014981	exon28	c.A3454C	p.T1152P	CTTGGGTGAGGTC	.	107.0	48.0	139.0	1.0	.	73
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108149731	108149731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH15	NM_014981	exon27	c.A3320G	p.E1107G	TCATTCTCCACTT	.	44.0	14.0	52.0	0.0	.	73
MYH2	4620	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	10432930	10432930	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH2	NM_017534	exon24	c.T3068C	p.V1023A	GTGTTGACTTTGT	.	52.0	40.0	128.0	0.0	.	194
MYH6	4624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23858850	23858850	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH6	NM_002471	exon27	c.T3811A	p.S1271T	TGAGGGAGCGTTG	.	126.0	55.0	139.0	0.0	.	94
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23892879	23892879	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH7	NM_000257	exon24	c.G2976T	p.L992L	CTTGGTCAGCTTG	.	91.0	39.0	102.0	0.0	.	94
MYH7	4625	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23900689	23900689	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH7	NM_000257	exon9	c.G734T	p.G245V	AATTTCCCCTGGA	.	67.0	27.0	70.0	0.0	.	94
MYH9	4627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	22	36684453	36684453	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYH9	NM_002473	exon34	c.G4777T	p.E1593X	CCATCTCCCGCAC	.	26.0	11.0	25.0	0.0	.	292
MYO10	4651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	16711259	16711259	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO10	NM_012334	exon20	c.C2025A	p.V675V	TCTTCGGACCGCA	.	104.0	60.0	180.0	0.0	.	3
MYO18B	84700	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26176138	26176138	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO18B	NM_032608	exon9	c.A2184C	p.T728T	CGCTACAGGCCGC	.	28.0	10.0	27.0	0.0	.	142
MYO18B	84700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26423048	26423048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO18B	NM_032608	exon43	c.A7108T	p.T2370S	CCGACCACACCCA	.	56.0	25.0	56.0	0.0	.	142
MYO1G	64005	broad.mit.edu;mdanderson.org	37	7	45002572	45002572	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO1G	NM_033054	exon21	c.A2897T	p.Q966L	CACCCCTGGCAGT	.	13.0	6.0	8.0	0.0	.	137
MYO3A	53904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	26463109	26463109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3A	NM_017433	exon30	c.A3916G	p.K1306E	GAAAAGAAGACAT	.	174.0	85.0	170.0	0.0	.	1007
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171243724	171243724	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3B	NM_001083615	exon14	c.T1483C	p.Y495H	GGAAAATATCTGG	.	99.0	52.0	102.0	0.0	.	530
MYO3B	140469	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	171260905	171260905	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO3B	NM_001083615	exon20	c.T2426A	p.L809Q	AGACCCTGGTTGG	.	100.0	46.0	120.0	0.0	.	530
MYO6	4646	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	76576647	76576647	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO6	NM_004999	exon18	c.1771-2A>T	.	TTTTTCAGACCCA	.	64.0	35.0	63.0	0.0	.	92
MYO7A	4647	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	76903162	76903162	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYO7A	NM_000260	exon31	c.A3991T	p.K1331X	TACGCCAAGGAGC	.	110.0	57.0	128.0	0.0	.	138
MYOC	4653	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	1	171605647	171605647	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	MYOC	NM_000261	exon3	c.C933G	p.Y311X	AGAAGGGTAGCCC	.	138.0	22.0	71.0	0.0	.	226
NAA38	51691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	117828430	117828430	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAA38	NM_016200	exon3	c.A171T	p.L57L	GGTACTAGGATTA	.	62.0	24.0	67.0	0.0	.	90
NAALAD2	10003	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	89907042	89907042	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAALAD2	NM_005467	exon14	c.G1461T	p.W487C	AAGCTGGTTGGAA	.	103.0	46.0	103.0	0.0	.	92
NABP2	79035	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56619992	56619992	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_024068	exon5	c.A320T	p.N107I	TTCCTAACTTCAG	.	116.0	58.0	152.0	0.0	.	.
NANOGNB	360030	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	7923072	7923072	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145465	exon3	c.A473G	p.N158S	AATATAATAAAGA	.	71.0	33.0	75.0	0.0	.	.
NAPSA	9476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50861904	50861904	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NAPSA	NM_004851	exon9	c.T1169G	p.M390R	CTCTTCATGTCCC	.	68.0	30.0	108.0	0.0	.	90
NBAS	51594	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	15679482	15679482	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBAS	NM_015909	exon8	c.380-2A>T	.	CGGAACTAGAACA	.	104.0	39.0	112.0	0.0	.	94
NBEA	26960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	35731383	35731383	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBEA	NM_015678	exon21	c.T2820C	p.D940D	GGTGGATACCCTC	.	61.0	19.0	58.0	0.0	.	144
NBN	4683	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	90995076	90995076	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBN	NM_002485	exon2	c.A45G	p.P15P	TCTGTATGGTTCT	.	89.0	41.0	114.0	0.0	.	1395
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41341610	41341610	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBR1	NM_031862	exon8	c.A486T	p.R162S	GTTCAGAGAACAA	.	99.0	49.0	115.0	0.0	.	130
NBR1	4077	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	41352594	41352594	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NBR1	NM_031862	exon17	c.G2437C	p.E813Q	ATCCCAGAGGTAG	.	180.0	75.0	207.0	0.0	.	130
NCAM2	4685	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	22782650	22782650	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCAM2	NM_004540	exon10	c.A1252G	p.I418V	AATCCTATCAATA	.	322.0	144.0	353.0	0.0	.	94
NCAPG	64151	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17814020	17814020	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCAPG	NM_022346	exon2	c.A288C	p.L96F	CCTTTTAAATTAT	.	47.0	20.0	70.0	0.0	.	153
NCOA4	8031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	51585413	51585413	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCOA4	NM_001145261	exon9	c.A1560G	p.K520K	ATACAAAGAAGGA	.	82.0	41.0	70.0	0.0	.	1042
NCOR2	9612	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	124886995	124886995	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NCOR2	NM_006312	exon16	c.A1595T	p.E532V	TCCTCCTCCTTCT	.	56.0	26.0	70.0	0.0	.	229
NDST2	8509	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	75567441	75567441	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST2	NM_003635	exon3	c.A706G	p.T236A	CATATGTACTATG	.	53.0	19.0	91.0	0.0	.	91
NDST3	9348	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119174753	119174753	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST3	NM_004784	exon13	c.T2499A	p.S833S	GGATTCTGATGTA	.	271.0	103.0	318.0	0.0	.	153
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115858495	115858495	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST4	NM_022569	exon5	c.C1386T	p.G462G	AATGAAGCCCTTT	.	90.0	37.0	93.0	0.0	.	94
NDST4	64579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	115997739	115997739	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDST4	NM_022569	exon2	c.A454G	p.K152E	AGTATTTTTCTAA	.	104.0	37.0	113.0	0.0	.	94
NDUFAF4	29078	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	97339048	97339048	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NDUFAF4	NM_014165	exon3	c.A460T	p.K154X	AATATTTAAGAAG	.	48.0	15.0	59.0	0.0	.	91
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	152466569	152466569	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEB	NM_001271208	exon81	c.T12084C	p.D4028D	GGGATCATCTTCA	.	64.0	26.0	78.0	0.0	.	145
NECAB3	63941	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	32247787	32247787	+	Missense_Mutation	SNP	C	C	T	rs200489455		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NECAB3	NM_031232	exon7	c.G547A	p.A183T	TCTGCGCCTCCAC	.	31.0	11.0	26.0	0.0	C|0.997;T|0.003	91
NEK5	341676	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	52676261	52676261	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEK5	NM_199289	exon10	c.A777C	p.L259F	ATTCTCTAAAAAG	.	233.0	102.0	230.0	0.0	.	334
NEK7	140609	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	198233311	198233311	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEK7	NM_133494	exon5	c.A318G	p.E106E	TAATGAACTAAAC	.	194.0	158.0	362.0	0.0	.	358
NELL2	4753	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	45105173	45105173	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NELL2	NM_001145107	exon12	c.A1241T	p.Q414L	ATGGTCTGGTCCT	.	83.0	23.0	75.0	0.0	.	517
NEMF	9147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50318359	50318359	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEMF	NM_004713	exon3	c.A153G	p.L51L	TTCAAGTAAAAGT	.	63.0	26.0	53.0	0.0	.	90
NEO1	4756	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	73541516	73541516	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEO1	NM_001172623	exon10	c.G1722A	p.L574L	TAAATTGTACTAC	.	51.0	12.0	75.0	0.0	.	116
NEUROD1	4760	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	182543118	182543118	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEUROD1	NM_002500	exon2	c.T470C	p.L157P	GAGCGCAGGATCT	.	63.0	29.0	62.0	0.0	.	91
NEUROD4	58158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55421151	55421151	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NEUROD4	NM_021191	exon2	c.G928T	p.D310Y	CCTATAGACATGT	.	79.0	37.0	85.0	0.0	.	94
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24841727	24841727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFATC4	NM_001198967	exon4	c.G1466T	p.R489I	AGCCTAGAGCCCA	.	56.0	32.0	47.0	0.0	.	92
NFATC4	4776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	24843545	24843545	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFATC4	NM_001198967	exon7	c.C1935A	p.A645A	CTCAGCCCAGGAG	.	44.0	21.0	45.0	0.0	.	92
NFIX	4784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	13136064	13136064	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NFIX	NM_001271043	exon2	c.A281T	p.E94V	GGCCCGAGTTCCG	.	61.0	28.0	66.0	0.0	.	272
NGF	4803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	115829387	115829387	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NGF	NM_002506	exon3	c.A30T	p.T10T	AAAAGCTGTGATC	.	63.0	31.0	85.0	0.0	.	1083
NHLH2	4808	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	116380638	116380638	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NHLH2	NM_001111061	exon2	c.T356A	p.L119Q	AGGCGCAGGATCT	.	50.0	19.0	46.0	0.0	.	90
NHLRC4	283948	broad.mit.edu;mdanderson.org	37	16	618166	618166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_176677	exon2	c.T119C	p.L40P	GCTCCCTGGGGGG	.	41.0	16.0	44.0	2.0	.	.
NID2	22795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	52481921	52481921	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NID2	NM_007361	exon15	c.C3101G	p.P1034R	TCCCGGGGGGTGC	.	119.0	58.0	127.0	0.0	.	158
NKX2-2	4821	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	21492594	21492594	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NKX2-2	NM_002509	exon2	c.C789A	p.H263Q	CAGGGGGTGTGCT	.	19.0	9.0	21.0	0.0	.	92
NKX2-8	26257	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	14	37051488	37051488	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NKX2-8	NM_014360	exon1	c.A107T	p.Q36L	TCGGGCTGGGGGG	.	73.0	31.0	102.0	0.0	.	226
NLE1	54475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33462285	33462285	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLE1	NM_018096	exon10	c.G1197T	p.W399C	GCCATCCCACAGC	.	90.0	46.0	108.0	0.0	.	290
NLGN4X	57502	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	5810965	5810965	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLGN4X	NM_181332	exon6	c.A2344T	p.I782F	TTGGAATCATGGT	.	68.0	59.0	118.0	0.0	.	195
NLK	51701	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	17	26499544	26499544	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLK	NM_016231	exon7	c.T1049A	p.L350X	TGTAGTTGGATTT	.	61.0	25.0	73.0	0.0	.	1403
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55497556	55497556	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon8	c.C2239A	p.L747I	CGGAACCTCTGCC	.	91.0	38.0	97.0	0.0	.	120
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55505725	55505725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon11	c.G2797T	p.G933W	GATCTGGGGCTGA	.	95.0	52.0	107.0	0.0	.	120
NLRP2	55655	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55505788	55505788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP2	NM_017852	exon11	c.T2860C	p.C954R	CCACTGTGCAACT	.	87.0	44.0	84.0	0.0	.	120
NLRP8	126205	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	56467397	56467397	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NLRP8	NM_176811	exon3	c.T1973A	p.V658E	ATGAGGTGGAACT	.	35.0	33.0	97.0	1.0	.	361
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117680507	117680507	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOS1	NM_001204218	exon21	c.T3068C	p.L1023P	TTGGATAGACCTG	.	60.0	31.0	76.0	0.0	.	154
NOS1	4842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	117703310	117703310	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOS1	NM_000620	exon12	c.C1947A	p.D649E	CACTTTGTCACTC	.	52.0	26.0	50.0	0.0	.	154
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	15299987	15299987	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOTCH3	NM_000435	exon9	c.1193-2A>T	.	GGCGCCTGCCGGA	.	66.0	25.0	79.0	0.0	.	855
NOTCH3	4854	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15290991	15290991	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOTCH3	NM_000435	exon20	c.A3219C	p.P1073P	GCCCTCTGGGCAC	.	52.0	25.0	55.0	0.0	.	855
NOX3	50508	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	155776903	155776903	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOX3	NM_015718	exon1	c.T32C	p.L11P	GTGGAGAGACCCT	.	84.0	35.0	95.0	0.0	.	91
NOX4	50507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	89069089	89069089	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NOX4	NM_016931	exon17	c.G1540C	p.A514P	TCAGTGCATGATA	.	231.0	99.0	255.0	1.0	.	515
NPAP1	23742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	24923872	24923872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018958	exon1	c.C2858A	p.T953N	CATATACTGCATT	.	42.0	22.0	54.0	0.0	.	.
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101587535	101587535	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPAS2	NM_002518	exon12	c.A1139T	p.K380M	CACTAAAGGTACG	.	91.0	35.0	96.0	0.0	.	94
NPAS2	4862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	101594175	101594175	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPAS2	NM_002518	exon15	c.C1396G	p.P466A	CAGGCCCCTCTGC	.	61.0	15.0	75.0	0.0	.	94
NPFFR2	10886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	72994372	72994372	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPFFR2	NM_004885	exon2	c.A370T	p.T124S	AATGACACAAAGC	.	79.0	36.0	83.0	0.0	.	92
NPHP4	261734	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	5967225	5967225	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPHP4	NM_015102	exon13	c.A1561T	p.R521W	TAGGCCTGGCCAA	.	101.0	49.0	149.0	0.0	.	515
NPNT	255743	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	106888492	106888492	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPNT	NM_001184691	exon12	c.A1583G	p.Q528R	CACTCCAGGTGTT	.	130.0	64.0	173.0	1.0	.	91
NPR1	4881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153661567	153661567	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NPR1	NM_000906	exon16	c.C2556T	p.I852I	CCAGATCCTGCCT	.	168.0	125.0	90.0	0.0	.	393
NR4A3	8013	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	102590707	102590707	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NR4A3	NM_173200	exon4	c.T416A	p.L139Q	AGGTGCTGCCCAG	.	19.0	14.0	37.0	0.0	.	186
NRK	203447	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	105153328	105153328	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NRK	NM_198465	exon13	c.T1695G	p.A565A	ACAGGCTGCCGAG	.	89.0	79.0	110.0	1.0	.	630
NRXN1	9378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	50463975	50463975	+	Silent	SNP	C	C	A	rs200816799	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NRXN1	NM_001135659	exon19	c.G3618T	p.V1206V	CACTCGCACCAAT	.	139.0	56.0	144.0	0.0	.	92
NSD1	64324	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	176637954	176637954	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NSD1	NM_022455	exon5	c.A2554G	p.I852V	AGTGACATAGAAA	.	66.0	32.0	88.0	0.0	.	188
NSMAF	8439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	59498516	59498516	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NSMAF	NM_001144772	exon29	c.T2583C	p.N861N	AATGACATTAAGA	.	64.0	21.0	77.0	0.0	.	91
NT5C1B-RDH14	100526794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	18736712	18736712	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001199103	exon9	c.A1698G	p.T566T	CAGATTTGTCCGT	.	140.0	65.0	160.0	0.0	.	.
NTRK2	4915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	87325598	87325598	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NTRK2	NM_001018065	exon6	c.A475T	p.I159F	ATGTGGATCAAGA	.	172.0	157.0	119.0	0.0	.	1404
NUDT17	200035	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145589344	145589344	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	NUDT17	NM_001012758	exon1	c.A84G	p.G28G	TCCGGCTCCCAGG	.	127.0	36.0	91.0	1.0	.	90
NXPE4	54827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	114453089	114453089	+	Missense_Mutation	SNP	A	A	T	rs184063316	by1000genomes	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001077639	exon3	c.T751A	p.C251S	CAGCACAGGGCAT	.	52.0	26.0	84.0	0.0	A|0.999;T|0.000	.
NYAP1	222950	broad.mit.edu;bcgsc.ca	37	7	100086552	100086552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_173564	exon4	c.C1208A	p.A403D	GCCGGGCCCGGAG	.	7.0	5.0	23.0	0.0	.	.
NYAP1	222950	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100086259	100086259	+	Silent	SNP	A	A	T	rs140403396	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_173564	exon4	c.A915T	p.S305S	AGCTTCAGCCCTC	.	57.0	30.0	69.0	0.0	A|0.998;C|0.002	.
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	102270334	102270334	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OLFM3	NM_058170	exon6	c.T837C	p.N279N	TGAGCCATTGTAG	.	90.0	45.0	104.0	0.0	.	93
OPA1	4976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	193336697	193336697	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OPA1	NM_130837	exon6	c.G650C	p.G217A	ATCGTGGATCTGA	.	59.0	20.0	72.0	0.0	.	68
OPCML	4978	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	133402212	133402212	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OPCML	NM_001012393	exon1	c.A8G	p.H3R	GCAGGATGGTACA	.	47.0	19.0	63.0	0.0	.	93
OR10C1	442194	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29408614	29408614	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10C1	NM_013941	exon1	c.C822A	p.S274S	GGTGTCCCTCTTC	.	81.0	35.0	90.0	0.0	.	22
OR10G8	219869	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123900744	123900744	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10G8	NM_001004464	exon1	c.T415A	p.S139T	GGGCGCTCGTGTA	.	241.0	142.0	180.0	2.0	.	92
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576643	158576643	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10Z1	NM_001004478	exon1	c.A415T	p.T139S	AATCCTACCCTCT	.	169.0	40.0	107.0	0.0	.	70
OR10Z1	128368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158576656	158576656	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR10Z1	NM_001004478	exon1	c.A428T	p.Q143L	GTGCCCAGCTGGT	.	179.0	138.0	107.0	0.0	.	70
OR11G2	390439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	14	20666491	20666491	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR11G2	NM_001005503	exon1	c.A997T	p.K333X	AGGAACAAAGATA	.	76.0	25.0	97.0	0.0	.	70
OR12D3	81797	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29343000	29343000	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR12D3	NM_030959	exon1	c.A65T	p.Q22L	AAAGGCTGCAGCT	.	208.0	77.0	250.0	0.0	.	133
OR1A2	26189	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	3100889	3100889	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1A2	NM_012352	exon1	c.T77A	p.V26D	ATAATGTCTTCTT	.	49.0	36.0	96.0	0.0	.	70
OR1D2	4991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	2996103	2996103	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1D2	NM_002548	exon1	c.T188A	p.L63Q	TTGGCCAGGAAGA	.	110.0	91.0	174.0	0.0	.	69
OR1D5	8386	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	2966603	2966603	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_014566	exon1	c.A299G	p.Q100R	TAGAGCTGTGTCA	.	140.0	91.0	306.0	0.0	.	.
OR1L3	26735	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125437543	125437543	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR1L3	NM_001005234	exon1	c.C135T	p.I45I	GCTCATCATCTTG	.	47.0	42.0	114.0	0.0	.	69
OR2A1	346528	broad.mit.edu;bcgsc.ca	37	7	144015436	144015436	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2A1	NM_001005287	exon1	c.C219T	p.T73T	CTACACCCGCAAC	.	221.0	46.0	251.0	0.0	.	2
OR2AT4	341152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	74800166	74800166	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2AT4	NM_001005285	exon1	c.C593T	p.T198I	TGGGGGGTGGTGT	.	55.0	24.0	58.0	0.0	.	69
OR2H2	7932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29556136	29556136	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2H2	NM_007160	exon1	c.T415G	p.C139G	CGCCTGTGCTGGC	.	66.0	39.0	97.0	0.0	.	22
OR2J2	26707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29141976	29141976	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2J2	NM_030905	exon1	c.A564G	p.L188L	GCGTTTATCATGT	.	81.0	37.0	90.0	0.0	.	68
OR2J3	442186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	29080029	29080029	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2J3	NM_001005216	exon1	c.T362A	p.M121K	TGGTGATGTCCTA	.	133.0	55.0	143.0	0.0	.	90
OR2S2	56656	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35957519	35957519	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR2S2	NM_019897	exon1	c.A577G	p.I193V	TGGAAATGTCAGC	.	79.0	45.0	86.0	0.0	.	68
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135489	55135489	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A15	NM_001005275	exon1	c.G130A	p.G44R	CTCTTAGGGCTCA	.	68.0	31.0	71.0	0.0	.	70
OR4A15	81328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55135678	55135678	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A15	NM_001005275	exon1	c.C319A	p.P107T	TTTGCTCCCAAAA	.	35.0	16.0	43.0	0.0	.	70
OR4A16	81327	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55110910	55110910	+	Silent	SNP	A	A	G	rs201952971	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4A16	NM_001005274	exon1	c.A234G	p.K78K	ACCCAAATTGATG	.	74.0	41.0	81.0	0.0	A|0.998;G|0.002	69
OR4C6	219432	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	55433038	55433038	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4C6	NM_001004704	exon1	c.C396T	p.I132I	CACGATCATCATG	.	70.0	31.0	65.0	0.0	.	70
OR4D5	219875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123811185	123811185	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4D5	NM_001001965	exon1	c.A862T	p.T288S	ATCTATACCCTGA	.	86.0	45.0	94.0	0.0	.	69
OR4K15	81127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20444394	20444394	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4K15	NM_001005486	exon1	c.T717C	p.V239V	CTTGGTTGTCTCC	.	86.0	52.0	68.0	0.0	.	69
OR4K2	390431	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20344887	20344887	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR4K2	NM_001005501	exon1	c.T461C	p.M154T	GAGTTATGCATTC	.	116.0	22.0	110.0	0.0	.	72
OR51A2	401667	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4976050	4976050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51A2	NM_001004748	exon1	c.A894C	p.K298N	AATCTGTTTAGTT	.	156.0	140.0	176.0	0.0	.	68
OR51A7	119687	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4928636	4928636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51A7	NM_001004749	exon1	c.C37A	p.L13I	CTTTTCCTTCTGA	.	27.0	21.0	66.0	1.0	.	70
OR51F2	119694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4842970	4842970	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51F2	NM_001004753	exon1	c.C355A	p.H119N	TTTCTACACGGAT	.	55.0	46.0	132.0	0.0	.	70
OR51G2	81282	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4936808	4936808	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51G2	NM_001005238	exon1	c.A86C	p.H29P	CAGATGTGCATGC	.	49.0	7.0	84.0	1.0	.	70
OR51S1	119692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	4870336	4870336	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR51S1	NM_001004758	exon1	c.T103A	p.W35R	ATGTCCACCAGGA	.	67.0	55.0	120.0	0.0	.	72
OR52N5	390075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	5799159	5799159	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR52N5	NM_001001922	exon1	c.A706T	p.S236C	AGAGGCTGATCGC	.	62.0	48.0	128.0	0.0	.	70
OR5AP2	338675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56409824	56409824	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5AP2	NM_001002925	exon1	c.G92T	p.G31V	AGGACTCCTTGTA	.	52.0	24.0	48.0	0.0	.	71
OR5B3	441608	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	58170104	58170104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5B3	NM_001005469	exon1	c.C779A	p.P260H	GAGCTGGGTTGTA	.	48.0	20.0	55.0	0.0	.	68
OR5J2	282775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55944226	55944226	+	Missense_Mutation	SNP	A	A	G	rs201858818		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR5J2	NM_001005492	exon1	c.A133G	p.M45V	CTGGGCATGATCC	.	72.0	36.0	74.0	0.0	A|0.999;G|0.001	115
OR6A2	8590	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	6816315	6816315	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6A2	NM_003696	exon1	c.A625G	p.I209V	TAAAAATGGCCAG	.	24.0	21.0	45.0	0.0	.	94
OR6C3	254786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	55726148	55726148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6C3	NM_054104	exon1	c.A664G	p.I222V	AGGACCATTTTGA	.	75.0	24.0	89.0	0.0	.	69
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669603	158669603	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6K2	NM_001005279	exon1	c.A840G	p.A280A	CAAAACTGCAAAG	.	408.0	93.0	228.0	0.0	.	69
OR6K2	81448	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158669632	158669632	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR6K2	NM_001005279	exon1	c.T811A	p.W271R	TATCCCAGAACAA	.	415.0	167.0	218.0	0.0	.	69
OR7G1	125962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	9226012	9226012	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR7G1	NM_001005192	exon1	c.T428A	p.L143X	ATCAGCAAGCCCC	.	89.0	32.0	92.0	0.0	.	70
OR8B8	26493	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	124310403	124310403	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8B8	NM_012378	exon1	c.T579A	p.Y193X	ATTCACATAGGTG	.	161.0	72.0	179.0	0.0	.	69
OR8I2	120586	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55861466	55861466	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8I2	NM_001003750	exon1	c.A683T	p.Q228L	GGATCCAGTCAGC	.	76.0	29.0	66.0	1.0	.	113
OR8J3	81168	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	55905003	55905003	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8J3	NM_001004064	exon1	c.A192T	p.R64S	TAGATGTCTCAGG	.	79.0	30.0	110.0	0.0	.	70
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56114284	56114284	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K1	NM_001002907	exon1	c.T770C	p.F257S	TCATGTTCTATGG	.	65.0	24.0	107.0	0.0	.	70
OR8K1	390157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	56114424	56114424	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K1	NM_001002907	exon1	c.A910T	p.K304X	GAAGTAAAAGATG	.	41.0	16.0	51.0	0.0	.	70
OR8K3	219473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	56086359	56086359	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K3	NM_001005202	exon1	c.C577A	p.H193N	AATACACATGAAA	.	75.0	29.0	85.0	0.0	.	70
OR8K5	219453	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	55926969	55926969	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8K5	NM_001004058	exon1	c.T825G	p.S275S	AAACACAGAAGCC	.	95.0	36.0	110.0	0.0	.	72
OR8S1	341568	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	48919702	48919702	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OR8S1	NM_001005203	exon1	c.C288G	p.G96G	AGAGGGCTGCCTG	.	41.0	17.0	73.0	1.0	.	69
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	56468593	56468593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001013358	exon1	c.C730A	p.L244M	TCCCACCTGACCT	.	93.0	18.0	104.0	0.0	.	.
OR9G9	504191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	56468658	56468658	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001013358	exon1	c.T795G	p.Y265X	TAGCTATTCTTTT	.	72.0	11.0	94.0	0.0	.	.
ORAI3	93129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	30965031	30965031	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ORAI3	NM_152288	exon2	c.A754G	p.M252V	GCCATCATGGTAC	.	47.0	25.0	57.0	0.0	.	68
OTOF	9381	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	26699020	26699020	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OTOF	NM_194248	exon23	c.C2842T	p.P948S	CGGGTGGGAAGGC	.	49.0	18.0	44.0	0.0	.	135
OTOP1	133060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	4199319	4199319	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OTOP1	NM_177998	exon5	c.T1242A	p.C414X	CTCAGCACAGAGG	.	57.0	32.0	68.0	0.0	.	92
OVCH1	341350	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	29580582	29580582	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OVCH1	NM_183378	exon29	c.3328-1C>A	.	CATACTGTGAGAA	.	27.0	9.0	34.0	0.0	.	210
OXA1L	5018	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	23237247	23237247	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXA1L	NM_005015	exon3	c.A486T	p.V162V	AGATGTAGTCCAA	.	80.0	35.0	82.0	0.0	.	204
OXR1	55074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	107691475	107691475	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXR1	NM_001198532	exon3	c.A261G	p.G87G	AGATGGAAGACGA	.	137.0	60.0	184.0	0.0	.	68
OXSM	54995	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	25833109	25833109	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	OXSM	NM_017897	exon2	c.G598T	p.G200C	CTCAAGGGCCCAA	.	114.0	55.0	123.0	0.0	.	132
P2RX6	9127	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	21380894	21380894	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_005446	exon12	c.C1314A	p.S438S	CCATTCCGGGAGC	.	72.0	26.0	96.0	0.0	.	.
P2RY1	5028	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	152554322	152554322	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	P2RY1	NM_002563	exon1	c.A751T	p.N251Y	CTGGACAACTCTC	.	77.0	41.0	88.0	0.0	.	500
PADI1	29943	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	17556654	17556654	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PADI1	NM_013358	exon9	c.A1004T	p.K335M	ACTGCAAGCTGAC	.	50.0	15.0	56.0	0.0	.	68
PAK3	5063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	110391047	110391047	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK3	NM_001128168	exon5	c.T467C	p.L156P	CTGTTCTAGATGT	.	250.0	223.0	244.0	0.0	.	1043
PAK7	57144	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9538336	9538336	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon7	c.A1662T	p.R554S	GAGAGCTCTCAGA	.	57.0	30.0	60.0	1.0	.	1434
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9546811	9546811	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon5	c.T1211A	p.L404H	AGGCTGAGGGAGC	.	46.0	21.0	67.0	0.0	.	1434
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9561478	9561478	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon4	c.A304G	p.K102E	TTTCTTTCCTTAG	.	65.0	22.0	72.0	0.0	.	1434
PAK7	57144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9624845	9624845	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAK7	NM_177990	exon3	c.A132T	p.A44A	CGTATCTGCTAAC	.	87.0	35.0	107.0	0.0	.	1434
PARD3B	117583	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	205989084	205989084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PARD3B	NM_205863	exon9	c.G1199T	p.R400I	TTACCAGAGACTC	.	130.0	49.0	140.0	1.0	.	140
PAX4	5078	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	127251726	127251726	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAX4	NM_006193	exon8	c.C752A	p.S251Y	CCAGGGGACTGCT	.	22.0	12.0	27.0	0.0	.	227
PAX7	5081	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	19071418	19071418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PAX7	NM_001135254	exon9	c.T1513G	p.Y505D	CAGGCCTACTAGG	.	112.0	45.0	131.0	0.0	.	1630
PBX4	80714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19675781	19675781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PBX4	NM_025245	exon6	c.C886T	p.P296S	TCCCTGGGACCCC	.	94.0	47.0	107.0	0.0	.	154
PCDH10	57575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	134084265	134084265	+	Silent	SNP	C	C	A	rs151224823	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH10	NM_032961	exon4	c.C2931A	p.G977G	TCCTGGCATGGAC	.	89.0	37.0	92.0	0.0	C|0.998;G|0.002	92
PCDH11X	27328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	91873834	91873834	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH11X	NM_032968	exon7	c.C3939T	p.P1313P	TCATCCCAGTGAT	.	162.0	151.0	172.0	0.0	.	193
PCDH7	5099	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	30724512	30724512	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDH7	NM_032457	exon1	c.T1468C	p.S490P	CACACCTCGACCC	.	45.0	22.0	57.0	0.0	.	229
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	140237342	140237342	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA10	NM_031859	exon1	c.G1709T	p.G570V	CCGCTGGCAGCGC	.	24.0	21.0	25.0	0.0	.	99
PCDHA10	56139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140237048	140237048	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA10	NM_031859	exon1	c.A1415T	p.H472L	GCTGCCACATCTT	.	78.0	72.0	94.0	0.0	.	99
PCDHA12	56137	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140257188	140257188	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018903	exon1	c.C2131T	p.L711L	AGCCTGCTGGTGC	.	67.0	36.0	78.0	0.0	.	.
PCDHA13	56136	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140263324	140263324	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA13	NM_031865	exon1	c.T1471A	p.S491T	CTGGTCTCCTACT	.	80.0	37.0	102.0	0.0	.	75
PCDHA3	56145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140180880	140180880	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHA3	NM_031497	exon1	c.A98T	p.Y33F	TCCACTACTCCGT	.	34.0	17.0	25.0	0.0	.	98
PCDHA7	56141	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140215472	140215472	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	PCDHA7,NS,carcinoma,-1	PCDHA7	NM_031852	exon1	c.C1504G	p.R502G	GGCGAGCGCGCGC	.	50.0	14.0	53.0	0.0	.	94
PCDHB10	56126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140572209	140572209	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB10	NM_018930	exon1	c.T84C	p.S28S	AGGTTCTGGGTTT	.	290.0	146.0	377.0	0.0	.	92
PCDHB2	56133	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140474700	140474700	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB2	NM_018936	exon1	c.A326T	p.Q109L	CTTTCCAGGTGTT	.	125.0	67.0	134.0	1.0	.	96
PCDHB3	56132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140480277	140480277	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHB3	NM_018937	exon1	c.T44C	p.L15S	AAGTCTTGCTTCT	.	77.0	29.0	112.0	0.0	.	92
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140793269	140793269	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032090	exon1	c.T527A	p.L176H	ATCAGCTCAGCCC	.	54.0	36.0	68.0	0.0	.	.
PCDHGA10	56106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140794504	140794504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032090	exon1	c.C1762T	p.P588S	GCAGAGCCCGGCT	.	45.0	13.0	50.0	0.0	.	.
PCDHGA3	56112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140725276	140725276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGA3	NM_032011	exon1	c.C1676T	p.A559V	ACAACGCGCCCGA	.	68.0	26.0	92.0	0.0	.	68
PCDHGB3	56102	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140751344	140751344	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018924	exon1	c.A1383T	p.V461V	GCATGTAGCTGAG	.	64.0	33.0	93.0	0.0	.	.
PCDHGC3	5098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140856012	140856012	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCDHGC3	NM_032402	exon1	c.T329C	p.L110S	TGGAGTTGGTAGT	.	95.0	61.0	108.0	0.0	.	24
PCGF2	7703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	36891668	36891668	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCGF2	NM_007144	exon11	c.C843A	p.T281T	GGATGGGGTGGCT	.	55.0	25.0	50.0	0.0	.	658
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	82764790	82764790	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCLO	NM_014510	exon3	c.G2076T	p.Q692H	GAGATCCTGTTTT	.	95.0	45.0	114.0	0.0	.	29
PCLO	27445	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	82764680	82764680	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCLO	NM_014510	exon3	c.T2186A	p.L729X	TTGGACAAAGAAT	.	90.0	36.0	103.0	0.0	.	29
PCNXL2	80003	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	233353792	233353792	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCNXL2	NM_014801	exon11	c.G2643T	p.Q881H	GGAGTACTGGCAG	.	79.0	69.0	153.0	0.0	.	91
PCSK5	5125	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	78973635	78973635	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PCSK5	NM_001190482	exon37	c.A5380T	p.S1794C	TATAAGAGCAGCT	.	180.0	53.0	163.0	1.0	.	93
PDE10A	10846	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	165863831	165863831	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE10A	NM_001130690	exon4	c.A245C	p.Q82P	ACTCCCTGCATAT	.	75.0	26.0	81.0	0.0	.	519
PDE1C	5137	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	32109959	32109959	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE1C	NM_001191056	exon1	c.T47A	p.L16Q	TATTTCAGAGAGT	.	110.0	45.0	97.0	1.0	.	94
PDE6B	5158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	656968	656968	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDE6B	NM_001145291	exon15	c.T1912A	p.S638T	CTGCTCTCGGAGG	.	87.0	27.0	129.0	0.0	.	90
PDGFRA	5156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	55138653	55138653	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDGFRA	NM_006206	exon9	c.G1330C	p.D444H	CTTCCTGATATTG	.	53.0	26.0	79.0	0.0	.	9497
PDIA2	64714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	333349	333349	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDIA2	NM_006849	exon1	c.T180A	p.P60P	GCACCCTGCCCTG	.	47.0	27.0	67.0	0.0	.	91
PDLIM4	8572	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	5	131607517	131607517	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDLIM4	NM_003687	exon6	c.T704A	p.L235H	GGAACCTCAAGCC	.	61.0	18.0	62.0	0.0	.	91
PDZD4	57595	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	X	153073936	153073936	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PDZD4	NM_032512	exon2	c.175delG	p.D59fs	AGCTGTCCCCCCG	.	46.0	40.0	100.0	0.0	.	193
PFKFB3	5209	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	6255708	6255708	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PFKFB3	NM_004566	exon2	c.A199G	p.K67E	CCCACAAAAGGTG	.	55.0	29.0	45.0	0.0	.	117
PGBD1	84547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	28268678	28268678	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGBD1	NM_001184743	exon7	c.A1047G	p.R349R	AGCTCGAGTGAGT	.	91.0	48.0	92.0	0.0	.	94
PGBD3	267004	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	50724703	50724703	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGBD3	NM_170753	exon2	c.C458T	p.P153L	ATGACCTCGTCAT	.	72.0	34.0	122.0	0.0	.	109
PGM2	55276	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	37836307	37836307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PGM2	NM_018290	exon3	c.A317G	p.D106G	GTTTTGACGCCCG	.	377.0	182.0	426.0	0.0	.	91
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	12749960	12749960	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_030948	exon4	c.T188A	p.V63E	GGAGAGTGCGCTC	.	38.0	17.0	40.0	0.0	.	.
PHACTR1	221692	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	13160509	13160509	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_030948	exon6	c.T489C	p.Y163Y	AATCTATGATAAA	.	88.0	24.0	67.0	0.0	.	.
PHACTR3	116154	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	58349384	58349384	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHACTR3	NM_080672	exon7	c.A1013T	p.E338V	GCAAGGAGAGGGA	.	99.0	36.0	85.0	0.0	.	93
PHC2	1912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	33836103	33836103	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHC2	NM_198040	exon4	c.T495A	p.A165A	CTGCTGAGCGATG	.	51.0	20.0	56.0	0.0	.	227
PHF21B	112885	broad.mit.edu;ucsc.edu;mdanderson.org	37	22	45312213	45312213	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHF21B	NM_138415	exon4	c.G511T	p.V171L	TGACCACAGACAC	.	13.0	5.0	15.0	0.0	.	93
PHGDH	26227	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	120284474	120284474	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHGDH	NM_006623	exon10	c.T1163C	p.V388A	CGGATGTGAACTT	.	47.0	18.0	55.0	0.0	.	91
PHIP	55023	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79657378	79657378	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHIP	NM_017934	exon36	c.A4168T	p.S1390C	AATTACTGAAAAT	.	88.0	36.0	88.0	1.0	.	579
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	79770201	79770201	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHIP	NM_017934	exon6	c.A433T	p.S145C	CAATGCTGGGTGG	.	52.0	22.0	62.0	0.0	.	579
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47622970	47622970	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKB	NM_000293	exon10	c.T1025C	p.L342S	CATCATTGGAAGA	.	26.0	23.0	72.0	0.0	.	154
PHKB	5257	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	47727355	47727355	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKB	NM_000293	exon28	c.A2832T	p.R944R	TGACCGAGTGTGG	.	70.0	59.0	148.0	0.0	.	154
PHKG2	5261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	30764551	30764551	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHKG2	NM_001172432	exon5	c.327-2A>T	.	TCCCTTAGGATGC	.	42.0	20.0	57.0	0.0	.	334
PHOSPHO2	493911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170557709	170557709	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHOSPHO2	NM_001199286	exon4	c.A228T	p.P76P	CACTCCAGGGATG	.	103.0	51.0	118.0	0.0	.	91
PHTF2	57157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	77567113	77567113	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PHTF2	NM_001127357	exon11	c.A1323T	p.A441A	GAAAGCAGACATG	.	276.0	119.0	289.0	0.0	.	23
PIDD	55367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	801093	801093	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PIDD	NM_145887	exon10	c.A1658T	p.H553L	AACAGGTGCAGGC	.	21.0	14.0	64.0	0.0	.	205
PITPNM2	57605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	123498472	123498472	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PITPNM2	NM_020845	exon3	c.G196T	p.G66C	GCATGCCCACATG	.	72.0	30.0	80.0	0.0	.	228
PIWIL4	143689	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	94354059	94354059	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PIWIL4	NM_152431	exon20	c.A2460T	p.P820P	TGTCCCAGCACCA	.	86.0	40.0	82.0	0.0	.	91
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47870899	47870899	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L1	NM_138295	exon42	c.A6389C	p.Q2130P	CAAGGCTGAAGGG	.	118.0	50.0	125.0	0.0	.	145
PKD1L1	168507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	47970705	47970705	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L1	NM_138295	exon6	c.A733T	p.R245X	ACCTTCTGGGAGA	.	48.0	22.0	52.0	0.0	.	145
PKD1L2	114780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	81248727	81248727	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKD1L2	NM_001076780	exon3	c.T536A	p.V179D	TCCTGGACCTGGA	.	37.0	29.0	107.0	0.0	.	92
PKDREJ	10343	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	46657787	46657787	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKDREJ	NM_006071	exon1	c.T1433C	p.L478S	AGGAACAAAGAAA	.	54.0	26.0	73.0	0.0	.	156
PKHD1	5314	broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	51491880	51491880	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1	NM_138694	exon66	c.T11700A	p.T3900T	ATTATTAGTCTGG	.	42.0	16.0	83.0	1.0	.	603
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	51890688	51890688	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1	NM_170724	exon32	c.A3920G	p.Q1307R	TCTCCTTGCATGG	.	96.0	44.0	97.0	0.0	.	603
PKHD1L1	93035	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	110413802	110413802	+	Missense_Mutation	SNP	T	T	G	rs201291395	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PKHD1L1	NM_177531	exon14	c.T1358G	p.L453R	TTCATCTGCAGAA	.	109.0	44.0	141.0	1.0	T|0.999;C|0.000	145
PLA2G4C	8605	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	48551611	48551611	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLA2G4C	NM_001159322	exon17	c.T1645G	p.C549G	CCAAGCAGCAACT	.	40.0	24.0	44.0	0.0	.	92
PLA2G4D	283748	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	42364510	42364510	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLA2G4D	NM_178034	exon14	c.T1398C	p.N466N	TTTGACATTGAGG	.	42.0	20.0	51.0	0.0	.	136
PLAC1	10761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	133700330	133700330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLAC1	NM_021796	exon3	c.G383T	p.C128F	ATGGAGCAGGGCT	.	76.0	70.0	70.0	0.0	.	131
PLAG1	5324	broad.mit.edu;ucsc.edu;mdanderson.org	37	8	57079715	57079715	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLAG1	NM_001114634	exon4	c.G590A	p.R197Q	TCCTTTCGGGTGT	.	25.0	4.0	38.0	0.0	.	1107
PLCB2	5330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	40591344	40591344	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCB2	NM_004573	exon8	c.A668T	p.E223V	AAGATCTCATCTA	.	43.0	18.0	71.0	0.0	.	275
PLCB4	5332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	9449299	9449299	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCB4	NM_001172646	exon35	c.G3330A	p.K1110K	TATCAAGAATAAA	.	37.0	11.0	35.0	0.0	.	274
PLCH2	9651	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	2409915	2409915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLCH2	NM_014638	exon2	c.T125C	p.V42A	GTCCAGTGGAGCG	.	41.0	23.0	54.0	0.0	.	229
PLEC	5339	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	144996711	144996711	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEC	NM_201380	exon31	c.C7797A	p.L2599L	CTGTTGGAGCTTC	.	15.0	7.0	35.0	0.0	.	141
PLEK2	26499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	67857415	67857415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEK2	NM_016445	exon7	c.G820A	p.D274N	CTGGATCCTTCCT	.	92.0	36.0	115.0	0.0	.	92
PLEKHA7	144100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	16816089	16816089	+	Missense_Mutation	SNP	C	C	A	rs150403598	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHA7	NM_175058	exon19	c.G2691T	p.Q897H	CCTCAGCTGGGGT	.	31.0	21.0	67.0	0.0	C|1.000;G|0.000	227
PLEKHD1	400224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	69967307	69967307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHD1	NM_001161498	exon3	c.T257A	p.L86Q	TCCCTCTGGGGGG	.	31.0	16.0	44.0	0.0	.	68
PLEKHG4	25894	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	67322137	67322137	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHG4	NM_001129728	exon20	c.G3288A	p.S1096S	GGCCTCGAACTCC	.	19.0	5.0	46.0	0.0	.	92
PLEKHG4B	153478	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	163383	163383	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLEKHG4B	NM_052909	exon11	c.A2128T	p.T710S	ACCCAGACCCTGG	.	41.0	32.0	99.0	0.0	.	228
PLG	5340	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	161160115	161160115	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLG	NM_000301	exon16	c.A1893G	p.S631S	GCCTTCATCCTAC	.	121.0	48.0	104.0	0.0	.	94
PLK2	10769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	57750786	57750786	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLK2	NM_006622	exon13	c.A1818T	p.L606L	AGATTTTAGCCAC	.	123.0	54.0	157.0	0.0	.	409
PLXNB1	5364	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	48465277	48465277	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PLXNB1	NM_001130082	exon3	c.A744G	p.V248V	TCGAGATACATAG	.	115.0	48.0	147.0	1.0	.	293
PNPT1	87178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	55910944	55910944	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PNPT1	NM_033109	exon5	c.A429T	p.P143P	GCCAGCTGGAAAG	.	281.0	125.0	335.0	1.0	.	90
PODXL2	50512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	127379659	127379659	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PODXL2	NM_015720	exon3	c.A788C	p.Q263P	CCAGCCAAGAGGC	.	138.0	60.0	121.0	0.0	.	91
POGZ	23126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	151403269	151403269	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POGZ	NM_015100	exon4	c.A332G	p.Q111R	GGATTCTGGGTCA	.	128.0	47.0	61.0	0.0	.	93
POLE2	5427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	50140842	50140842	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLE2	NM_001197331	exon5	c.A416T	p.Q139L	CTTACCTGGTGCA	.	93.0	39.0	89.0	0.0	.	229
POLQ	10721	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	121263593	121263593	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLQ	NM_199420	exon2	c.A324C	p.G108G	ATTCTTTCCTTCC	.	159.0	67.0	166.0	0.0	.	664
POLR3E	55718	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	22316495	22316495	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POLR3E	NM_001258033	exon3	c.A55G	p.K19E	TTGGCCAAGAGTC	.	71.0	29.0	76.0	0.0	.	91
PON3	5446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	95023973	95023973	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PON3	NM_000940	exon2	c.A128T	p.H43L	ATAAGGTGGCAGT	.	81.0	44.0	109.0	0.0	.	91
POU2F2	5452	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	42621499	42621499	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	POU2F2	NM_002698	exon5	c.G206T	p.S69I	TCGCCACTGGGGT	.	34.0	21.0	26.0	0.0	.	227
PPAP2A	8611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	54763943	54763943	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPAP2A	NM_176895	exon3	c.A248T	p.N83I	AAAAGGTTACAGT	.	57.0	22.0	74.0	0.0	.	92
PPM1H	57460	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	63083571	63083571	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPM1H	NM_020700	exon8	c.A1153G	p.T385A	CAATAGTTGCCAT	.	52.0	22.0	62.0	0.0	.	637
PPP1R17	10842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	31732116	31732116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_006658	exon2	c.G61T	p.D21Y	AAGCTAGACCCTC	.	90.0	40.0	87.0	0.0	.	.
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	113520088	113520088	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP1R3A	NM_002711	exon4	c.A1059T	p.A353A	CCCCTCTGCTTTA	.	137.0	63.0	135.0	0.0	.	832
PPP1R3A	5506	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	7	113519017	113519017	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP1R3A	NM_002711	exon4	c.C2130A	p.C710X	TTCACAGCACACT	.	54.0	27.0	76.0	0.0	.	832
PPP2R5B	5526	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64699068	64699068	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPP2R5B	NM_006244	exon10	c.G983C	p.C328S	AAACCTGCACCCA	.	49.0	16.0	59.0	0.0	.	660
PPYR1	5540	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	47087208	47087208	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PPYR1	NM_005972	exon3	c.T425C	p.L142P	ATCAGCTCATCAT	.	124.0	24.0	107.0	0.0	.	524
PRAME	23532	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	22892325	22892325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRAME	NM_206954	exon5	c.T776C	p.M259T	TTAATCATCTGGC	.	80.0	32.0	75.0	0.0	.	515
PRAMEF2	65122	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	12921328	12921328	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRAMEF2	NM_023014	exon4	c.G1119C	p.L373L	TGGCCTGAGCTGC	.	161.0	16.0	207.0	0.0	.	68
PRDM15	63977	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	43281737	43281737	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM15	NM_022115	exon7	c.A826C	p.M276L	TGTGCATGCTGGC	.	59.0	21.0	75.0	0.0	.	90
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3102902	3102902	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM16	NM_022114	exon2	c.T251A	p.F84Y	CAGACTTCGAGCT	.	121.0	51.0	190.0	0.0	.	660
PRDM16	63976	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	3319469	3319469	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRDM16	NM_022114	exon6	c.T791A	p.L264Q	AGGGCCTGGCTGA	.	167.0	89.0	212.0	0.0	.	660
PRICKLE2	166336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	64148718	64148718	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRICKLE2	NM_198859	exon3	c.C232A	p.H78N	GCTGGTGTAGTAG	.	68.0	25.0	68.0	0.0	.	95
PRKCG	5582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	54401219	54401219	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRKCG	NM_002739	exon10	c.C946A	p.R316R	CGGGTGCGGATGG	.	38.0	22.0	57.0	0.0	.	1367
PRKDC	5591	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	48794060	48794060	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	PRKDC,NS,carcinoma,0	PRKDC	.	.	.	.	TTGTATTAAAAGA	.	151.0	63.0	201.0	0.0	.	1515
PRKG1	5592	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	53564432	53564432	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRKG1	NM_006258	exon4	c.A680G	p.Y227C	CCGAGTATATGGA	.	38.0	20.0	61.0	0.0	.	523
PRLHR	2834	broad.mit.edu;bcgsc.ca	37	10	120353894	120353894	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRLHR	NM_004248	exon2	c.C863A	p.A288D	CAGACGGCGAACA	.	6.0	5.0	16.0	0.0	.	90
PROM1	8842	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	16025970	16025970	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PROM1	NM_006017	exon6	c.T642A	p.Y214X	CAATATATATTTG	.	55.0	33.0	73.0	0.0	.	207
PRR16	51334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	120022245	120022245	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRR16	NM_016644	exon3	c.T687C	p.P229P	CCTCCCTCCTACA	.	104.0	31.0	147.0	1.0	.	71
PRR5-ARHGAP8	553158	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	45218295	45218295	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRR5-ARHGAP8	NM_181334	exon9	c.A797T	p.E266V	TGAGTGAGCTCCA	.	66.0	26.0	118.0	0.0	.	161
PRRC2C	23215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	171510057	171510057	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_015172	exon16	c.A3446T	p.E1149V	TTATAGAGAGGCC	.	338.0	74.0	186.0	0.0	.	.
PRSS54	221191	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	58320072	58320072	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRSS54	NM_001080492	exon5	c.A291C	p.I97I	GTTACTTATACCC	.	49.0	38.0	115.0	0.0	.	70
PRSS58	136541	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	141952141	141952141	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRSS58	NM_001001317	exon6	c.T626G	p.L209R	AAAGACAGGATTC	.	119.0	45.0	123.0	0.0	.	24
PRUNE2	158471	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	79324425	79324425	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRUNE2	NM_015225	exon8	c.T2765C	p.F922S	TCCTCAAAAAGGT	.	170.0	41.0	138.0	0.0	.	157
PRX	57716	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	40903671	40903671	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PRX	NM_181882	exon7	c.A588T	p.R196R	CACTTCTCGTACA	.	19.0	10.0	23.0	0.0	.	92
PSD2	84249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	139193135	139193135	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSD2	NM_032289	exon3	c.T613A	p.F205I	ATGGCGTTTGAGG	.	78.0	49.0	93.0	0.0	.	91
PSG3	5671	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43233999	43233999	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSG3	NM_021016	exon4	c.C919A	p.P307T	GATAGGGTCCTGT	.	23.0	9.0	32.0	0.0	.	92
PSG6	5675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	43412004	43412004	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSG6	NM_001031850	exon4	c.A709G	p.K237E	GCAGCTTCGCTGT	.	40.0	24.0	39.0	0.0	.	92
PSMD1	5707	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	231944930	231944930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSMD1	NM_002807	exon12	c.G1315A	p.E439K	TATCAGGAAGGTG	.	86.0	40.0	110.0	0.0	.	92
PSRC1	84722	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109824547	109824547	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PSRC1	NM_001032291	exon4	c.A213C	p.P71P	CTTCTCTGGACTG	.	114.0	43.0	136.0	0.0	.	90
PTCHD2	57540	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	11589857	11589857	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTCHD2	NM_020780	exon15	c.T2943C	p.R981R	GGCCCGTCTCTCA	.	63.0	35.0	79.0	0.0	.	209
PTGER3	5733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	71418661	71418661	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTGER3	NM_198718	exon4	c.A1186C	p.R396R	CTTCTCTGTTCAG	.	42.0	13.0	55.0	0.0	.	660
PTGS2	5743	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186645249	186645249	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTGS2	NM_000963	exon8	c.A1038G	p.K346K	GTCAAATTTCAGT	.	214.0	147.0	129.0	0.0	.	227
PTH2R	5746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	209345825	209345825	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTH2R	NM_005048	exon10	c.A1012T	p.R338X	ACGGTTAGAGTTC	.	178.0	69.0	181.0	0.0	.	502
PTPN22	26191	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	114394650	114394650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPN22	NM_015967	exon10	c.A827C	p.Q276P	CATACCTGCGTTT	.	41.0	14.0	47.0	0.0	.	227
PTPN5	84867	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	18755139	18755139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPN5	NM_032781	exon10	c.C1044A	p.D348E	CAGAGGGTCGTCA	.	48.0	41.0	99.0	0.0	.	229
PTPRB	5787	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	70983979	70983979	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRB	NM_001109754	exon8	c.1815delT	p.N605fs	GCCATTATTGTTT	.	112.0	38.0	153.0	0.0	.	226
PTPRD	5789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	8486105	8486105	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRD	NM_002839	exon28	c.G2712A	p.G904G	CTCCTCCCCAAAG	.	115.0	59.0	108.0	0.0	.	912
PTPRE	5791	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	129869164	129869164	+	Silent	SNP	G	G	T	rs143511195	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRE	NM_006504	exon15	c.G1386T	p.P462P	CATCCCGTGTAAG	.	34.0	23.0	68.0	0.0	G|1.000;C|0.000	227
PTPRQ	374462	broad.mit.edu;bcgsc.ca	37	12	80940430	80940430	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145026	exon21	c.T3453C	p.N1151N	TGGAAATGGCAAT	.	251.0	14.0	265.0	0.0	.	.
PTPRQ	374462	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	81042674	81042674	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145026	exon33	c.5400-2A>T	.	TATTGCAGGTTAC	.	231.0	87.0	257.0	0.0	.	.
PTPRZ1	5803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	121684539	121684539	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PTPRZ1	NM_002851	exon23	c.C6001A	p.L2001M	GAGGTGCTGGACA	.	81.0	38.0	70.0	0.0	.	699
PVRL4	81607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	161044159	161044159	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PVRL4	NM_030916	exon6	c.C1005A	p.P335P	TTCCTGGGGGTCT	.	182.0	38.0	112.0	0.0	.	92
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159519900	159519900	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PWWP2A	NM_001130864	exon2	c.A1757T	p.D586V	GTGCTATCAATGC	.	33.0	13.0	41.0	0.0	.	68
PWWP2A	114825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159519933	159519933	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PWWP2A	NM_001130864	exon2	c.C1724G	p.S575C	GAGTCAGATTTCT	.	39.0	17.0	45.0	0.0	.	68
PXDN	7837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	1667460	1667460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PXDN	NM_012293	exon12	c.A1484T	p.H495L	TGGTCGTGGAGGG	.	51.0	25.0	56.0	0.0	.	166
PYDC1	260434	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	31228226	31228226	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	PYDC1	NM_152901	exon1	c.G124T	p.G42C	GCGCGCCCCGCGG	.	86.0	44.0	97.0	0.0	.	68
QRFP	347148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	133768976	133768976	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	QRFP	NM_198180	exon1	c.T250A	p.C84S	ATCTGCAGCCAGC	.	38.0	34.0	101.0	0.0	.	90
R3HDML	140902	broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	42973928	42973928	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	R3HDML	NM_178491	exon4	c.T539A	p.L180Q	ATCGGCTGGGCTG	.	103.0	39.0	101.0	1.0	.	90
RABGAP1	23637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125782674	125782674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RABGAP1	NM_012197	exon13	c.A1730T	p.Q577L	TCTGGCAGCTGCT	.	27.0	23.0	59.0	0.0	.	500
RAD51B	5890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	68758622	68758622	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAD51B	NM_133509	exon8	c.A778G	p.T260A	CAGATTACAACCC	.	44.0	20.0	47.0	0.0	.	660
RAD51D	5892	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33434032	33434032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAD51D	NM_001142571	exon5	c.C515A	p.A172D	GTTTTAGCCTGAA	.	45.0	10.0	68.0	0.0	.	228
RADIL	55698	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	4843189	4843189	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RADIL	NM_018059	exon11	c.A2487C	p.P829P	GCACACTGGCTGG	.	47.0	18.0	41.0	0.0	.	994
RAG1	5896	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36596843	36596843	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAG1	NM_000448	exon2	c.A1989C	p.A663A	GCTGGCAGATGAG	.	92.0	38.0	96.0	0.0	.	230
RAG2	5897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	36614915	36614915	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAG2	NM_001243785	exon3	c.T804C	p.N268N	TTCATCATTGTTA	.	48.0	18.0	48.0	0.0	.	95
RANBP3	8498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	5918611	5918611	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RANBP3	NM_007322	exon15	c.A1369T	p.T457S	GCTTGGTGTTGAG	.	96.0	49.0	118.0	0.0	.	272
RANBP6	26953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	6012662	6012662	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RANBP6	NM_012416	exon1	c.A2946T	p.S982S	TATTGCTGAGATA	.	77.0	8.0	171.0	0.0	.	229
RARG	5916	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53605571	53605571	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RARG	NM_000966	exon10	c.C1254G	p.N418K	TTCAGGGTTCTCC	.	30.0	12.0	39.0	0.0	.	722
RASAL1	8437	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	113557018	113557018	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASAL1	NM_004658	exon8	c.T557A	p.L186Q	TCCCGCAGCTCCA	.	50.0	22.0	63.0	0.0	.	229
RASGRF2	5924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	80363997	80363997	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASGRF2	NM_006909	exon3	c.A542T	p.E181V	AATCAGAGGTATT	.	61.0	42.0	79.0	0.0	.	725
RASGRP1	10125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	38804991	38804991	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASGRP1	NM_001128602	exon7	c.T842C	p.V281A	TGAGCCACCTGGA	.	68.0	27.0	78.0	0.0	.	697
RASSF4	83937	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	45484737	45484737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RASSF4	NM_032023	exon7	c.C547G	p.P183A	TTTACTCCAGCCT	.	52.0	19.0	68.0	0.0	.	290
RAX	30062	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	18	56936364	56936364	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RAX	NM_013435	exon3	c.T913A	p.C305S	GCCCGCACGGGTA	.	42.0	15.0	51.0	0.0	.	90
RB1	5925	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	48953748	48953748	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RB1	NM_000321	exon14	c.1351delC	p.R451fs	GGAGTTCGCTTGT	.	212.0	191.0	277.0	0.0	.	3784
RB1	5925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	49030437	49030437	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RB1	NM_000321	exon19	c.A1912T	p.T638S	TTCCAGACCCAGA	.	275.0	116.0	279.0	0.0	.	3784
RBL2	5934	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	53498136	53498136	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RBL2	NM_005611	exon12	c.1561-2A>G	.	TTTTATAGGGTAT	.	30.0	25.0	50.0	0.0	.	841
RBM48	84060	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	92158171	92158171	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_032120	exon1	c.A44T	p.H15L	ATCACCACGTCCA	.	108.0	50.0	131.0	0.0	.	.
RBMXL3	139804	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	X	114424720	114424720	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145346	exon1	c.T716C	p.V239A	CGCGGGTCCGGGA	.	33.0	28.0	42.0	0.0	.	.
RCC1	1104	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	28864505	28864505	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RCC1	NM_001048194	exon11	c.A1345G	p.K449E	AAGGACAAAGAAC	.	37.0	14.0	66.0	0.0	.	228
RCOR3	55758	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	211447593	211447593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RCOR3	NM_001136223	exon4	c.A343G	p.N115D	GGCTACAATGTGG	.	201.0	158.0	417.0	0.0	.	91
RDH10	157506	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	74233273	74233273	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RDH10	NM_172037	exon4	c.A731G	p.Y244C	GCCCTTATCTTGT	.	46.0	18.0	79.0	0.0	.	514
RDH13	112724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55556516	55556516	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RDH13	NM_001145971	exon7	c.A922G	p.R308G	AAAGCCTCCGGGC	.	80.0	21.0	119.0	0.0	.	92
RECK	8434	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	36122893	36122893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RECK	NM_021111	exon21	c.C2767T	p.H923Y	GCGTCCCATGTCC	.	128.0	51.0	144.0	1.0	.	93
RFPL4B	442247	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	112671556	112671556	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RFPL4B	NM_001013734	exon3	c.646delG	p.E216fs	GACTTAGAAGAAA	.	49.0	28.0	46.0	0.0	.	68
RFTN2	130132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	198540055	198540055	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RFTN2	NM_144629	exon1	c.T128A	p.F43Y	AGAGTAAAATCCA	.	71.0	28.0	109.0	0.0	.	90
RGP1	9827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35752015	35752015	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGP1	NM_001080496	exon8	c.A825G	p.A275A	TGGGGCAGGGGGT	.	92.0	34.0	112.0	0.0	.	23
RGPD8	727851	broad.mit.edu;bcgsc.ca	37	2	113145873	113145873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001164463	exon20	c.G4649A	p.S1550N	TCACTACTAAAAA	.	299.0	91.0	327.0	0.0	.	.
RGS13	6003	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192627447	192627447	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS13	NM_002927	exon6	c.A244T	p.R82W	ATTTCTAGGGCAA	.	264.0	194.0	136.0	1.0	.	226
RGS22	26166	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	101075783	101075783	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS22	NM_015668	exon8	c.A1213T	p.R405W	AAGTCCTATGAGA	.	79.0	38.0	98.0	1.0	.	140
RGS9BP	388531	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	33167237	33167237	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RGS9BP	NM_207391	exon1	c.T68A	p.L23Q	ACCACCTGGTGCT	.	50.0	22.0	34.0	0.0	.	90
RHBDF1	64285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	114754	114754	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RHBDF1	NM_022450	exon3	c.A191G	p.H64R	AGCTCATGGTGGG	.	44.0	20.0	66.0	0.0	.	92
RIMS2	9699	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	104924293	104924293	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RIMS2	NM_001100117	exon6	c.T1705G	p.W569G	GTAACCTGGCAAC	.	57.0	26.0	53.0	0.0	.	279
RIT2	6014	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	40554045	40554045	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RIT2	NM_001272077	exon3	c.T228A	p.A76A	CTGGCCAGCAGTG	.	252.0	134.0	296.0	1.0	.	1084
RLIM	51132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	73812565	73812565	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RLIM	NM_183353	exon5	c.A585T	p.S195S	TTCAGTTGAATTT	.	43.0	33.0	47.0	0.0	.	228
RNF111	54778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	59373264	59373264	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF111	NM_017610	exon8	c.A2078G	p.H693R	CTTTCCATTCTCA	.	199.0	91.0	202.0	0.0	.	92
RNF115	27246	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	145663367	145663367	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF115	NM_014455	exon4	c.G428C	p.G143A	TTGAAGGGTGAGT	.	125.0	43.0	77.0	0.0	.	91
RNF121	55298	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	71705854	71705854	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF121	NM_018320	exon7	c.A717G	p.E239E	CAGTGAAGAGGGG	.	49.0	24.0	69.0	2.0	.	226
RNF144B	255488	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	18465185	18465185	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF144B	NM_182757	exon8	c.A799G	p.I267V	TTGGGCATCATTG	.	135.0	64.0	118.0	0.0	.	226
RNF148	378925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	122342188	122342188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF148	NM_198085	exon1	c.A617G	p.Y206C	TCTAAGTAAAAGT	.	44.0	23.0	41.0	0.0	.	204
RNF157	114804	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	74151646	74151646	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF157	NM_052916	exon15	c.A1695G	p.G565G	TACCTCTCCTTCT	.	55.0	17.0	52.0	0.0	.	228
RNF168	165918	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	196199329	196199329	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF168	NM_152617	exon6	c.A1077G	p.S359S	CACCCCTGATGTG	.	98.0	45.0	93.0	0.0	.	90
RNF19A	25897	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	101287279	101287279	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RNF19A	NM_015435	exon4	c.A785T	p.Q262L	CAGGTCTGGTTGG	.	112.0	55.0	128.0	0.0	.	229
ROBO2	6092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	77595492	77595492	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROBO2	NM_002942	exon7	c.C938T	p.P313L	TAGCTCCCCCACA	.	58.0	22.0	51.0	0.0	.	328
ROCK1	6093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	18559965	18559965	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROCK1	NM_005406	exon22	c.A2560G	p.T854A	AAAGTGTCTGCAA	.	47.0	20.0	60.0	0.0	.	1026
ROCK2	9475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	11375944	11375944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROCK2	NM_004850	exon5	c.G607A	p.D203N	TTGCATCCAGAGC	.	185.0	95.0	204.0	1.0	.	546
ROR2	4920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	94488970	94488970	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROR2	NM_004560	exon8	c.A1239T	p.A413A	TGGAATTGCGATG	.	57.0	25.0	71.0	0.0	.	1471
ROS1	6098	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	117609770	117609770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ROS1	NM_002944	exon43	c.A6929C	p.H2310P	TCTGCATGTGGTT	.	115.0	51.0	142.0	0.0	.	1353
RPL4	6124	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	66795504	66795504	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPL4	NM_000968	exon4	c.176-2A>T	.	ATGACCTAAAATT	.	115.0	44.0	110.0	0.0	.	90
RPS6KA6	27330	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	83390124	83390124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPS6KA6	NM_014496	exon7	c.T596G	p.L199R	GGCTTCAGGTCTC	.	260.0	233.0	301.0	0.0	.	615
RPS6KC1	26750	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	213303010	213303010	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RPS6KC1	NM_012424	exon6	c.G613T	p.G205W	GCACTAGGGGCTG	.	39.0	27.0	89.0	0.0	.	417
RSPH6A	81492	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	46318016	46318016	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RSPH6A	NM_030785	exon1	c.A419T	p.E140V	GGGGGCTCCTGGA	.	52.0	23.0	74.0	0.0	.	91
RSPO2	340419	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	109094862	109094862	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RSPO2	NM_178565	exon2	c.A5G	p.Q2R	CGAAACTGCATCT	.	29.0	11.0	42.0	0.0	.	231
RTP4	64108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	187088757	187088757	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RTP4	NM_022147	exon2	c.A337T	p.R113W	ACCATGAGGATTC	.	103.0	48.0	109.0	0.0	.	90
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71629350	71629350	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUFY3	NM_001130709	exon3	c.A614T	p.E205V	CCGCAGAGATAAC	.	314.0	160.0	400.0	0.0	.	90
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92983058	92983058	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUNX1T1	NM_001198679	exon11	c.T1544A	p.V515E	CGCTTCACCTCAT	.	32.0	14.0	36.0	0.0	.	1196
RUNX1T1	862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92998408	92998408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RUNX1T1	NM_001198679	exon9	c.G1400A	p.S467N	CTGCTACTGCCGC	.	73.0	27.0	88.0	0.0	.	1196
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	39076640	39076640	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR1	NM_000540	exon103	c.G14866T	p.E4956X	GATATGGAGGTAG	.	56.0	25.0	69.0	0.0	.	100
RYR2	6262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237872815	237872815	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR2	NM_001035	exon70	c.A10178T	p.E3393V	AAGCAGAGGAGCT	.	36.0	25.0	68.0	0.0	.	158
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	33954785	33954785	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001243996	exon35	c.A5054T	p.E1685V	GCCCCGAGATTCC	.	74.0	35.0	81.0	0.0	.	520
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34080457	34080457	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001243996	exon67	c.C9628G	p.L3210V	CCCGACCTGCTGA	.	95.0	47.0	99.0	0.0	.	520
RYR3	6263	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	34105180	34105180	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	RYR3	NM_001036	exon73	c.C10374T	p.V3458V	AGCTGTCTTCCAC	.	57.0	36.0	65.0	0.0	.	520
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	10624587	10624587	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	S1PR5	NM_030760	exon2	c.G1101A	p.S367S	CTGGGGCGATGAG	.	36.0	18.0	33.0	0.0	.	523
S1PR5	53637	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	10625481	10625481	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	S1PR5	NM_030760	exon2	c.T207C	p.A69A	CATGGGAGCGTGG	.	70.0	17.0	70.0	0.0	.	523
SAA1	6288	bcgsc.ca;mdanderson.org	37	11	18290840	18290840	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAA1	NM_199161	exon3	c.A190G	p.K64E	GCTGCCAAAAGGG	.	63.0	27.0	145.0	0.0	.	650
SAA2	6289	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	18267497	18267497	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAA2	NM_030754	exon3	c.A190G	p.K64E	CCCTTTTGGCAGC	.	122.0	35.0	248.0	0.0	.	514
SAGE1	55511	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	134993960	134993960	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAGE1	NM_018666	exon18	c.A2369C	p.N790T	CCAAAAACTACAG	.	75.0	68.0	84.0	0.0	.	133
SALL4	57167	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50408636	50408636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SALL4	NM_020436	exon2	c.G386T	p.S129I	TCCTTACTGCCGG	.	47.0	13.0	64.0	1.0	.	92
SAMD15	161394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	77844096	77844096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD15	NM_001010860	exon1	c.C335G	p.S112C	AAACATCCAGAGA	.	61.0	24.0	85.0	0.0	.	90
SAMD3	154075	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	130497042	130497042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD3	NM_001017373	exon8	c.A766G	p.T256A	TCCTTGTCTGGCC	.	71.0	24.0	77.0	0.0	.	91
SAMD9L	219285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	92763730	92763730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SAMD9L	NM_152703	exon5	c.A1555G	p.R519G	TTTCTCTCTGCCA	.	55.0	25.0	65.0	0.0	.	94
SASH1	23328	broad.mit.edu;bcgsc.ca	37	6	148864814	148864814	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SASH1	NM_015278	exon18	c.2210-2A>T	.	TCTCACAGGCAAG	.	44.0	16.0	49.0	1.0	.	90
SASH1	23328	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	148848610	148848610	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SASH1	NM_015278	exon12	c.T1306C	p.Y436H	TTTGTGTACAAAG	.	49.0	21.0	71.0	0.0	.	90
SCAF1	58506	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	50154181	50154181	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCAF1	NM_021228	exon7	c.A535C	p.T179P	TTGGGCACGGGAG	.	65.0	20.0	76.0	0.0	.	68
SCAPER	49855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	77021006	77021006	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCAPER	NM_020843	exon16	c.G2095C	p.E699Q	GGGCTTCTTGTTC	.	77.0	32.0	103.0	0.0	.	137
SCARF1	8578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	17	1538573	1538573	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCARF1	NM_003693	exon11	c.A1972C	p.T658P	GGCCAGTGGCTGA	.	46.0	39.0	71.0	0.0	.	91
SCFD2	152579	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	54140025	54140025	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCFD2	NM_152540	exon4	c.A1279T	p.N427Y	GAAAGTTGTCCCA	.	90.0	35.0	106.0	1.0	.	93
SCFD2	152579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	53786893	53786893	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCFD2	NM_152540	exon6	c.A1706T	p.Q569L	CTTGCCTGGTGGG	.	41.0	12.0	58.0	0.0	.	93
SCN1A	6323	ucsc.edu;bcgsc.ca	37	2	166901779	166901779	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCN1A	NM_001165964	exon10	c.T1436C	p.L479P	TCTGAGAGCCTGC	.	59.0	6.0	64.0	0.0	.	147
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	167298134	167298134	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCN7A	NM_002976	exon14	c.A1929G	p.A643A	GCCGAATGCAGCA	.	176.0	80.0	231.0	1.0	.	67
SCNN1G	6340	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	23223399	23223399	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SCNN1G	NM_001039	exon8	c.T1221C	p.C407C	GAAATGTGGGTGT	.	43.0	16.0	49.0	1.0	.	158
SDCCAG8	10806	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	243433405	243433405	+	Splice_Site	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SDCCAG8	NM_006642	exon2	c.68-2A>C	.	TCTTGCAGAACAT	.	30.0	27.0	69.0	0.0	.	90
SDPR	8436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	192711467	192711467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SDPR	NM_004657	exon1	c.T185A	p.L62Q	TTGTCCAGGAGCG	.	77.0	38.0	90.0	0.0	.	92
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	75196640	75196640	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC14L1	NM_001204408	exon11	c.G894T	p.M298I	GATCATGTGTCAG	.	60.0	25.0	92.0	0.0	.	92
SEC16B	89866	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	177906378	177906378	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC16B	NM_033127	exon19	c.A2474G	p.E825G	ATTTCCTCCCAGA	.	96.0	65.0	53.0	0.0	.	93
SEC24D	9871	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	119727008	119727008	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEC24D	NM_014822	exon7	c.A903G	p.I301M	GTCTTGTATCATG	.	44.0	20.0	28.0	0.0	.	90
SELP	6403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	169586539	169586539	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SELP	NM_003005	exon3	c.A208T	p.I70F	TCTGGATGGCCAC	.	210.0	34.0	107.0	0.0	.	94
SEMA3C	10512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	80457899	80457899	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3C	NM_006379	exon4	c.264+2T>C	.	AAACTTACACTCA	.	127.0	49.0	130.0	0.0	.	515
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52471561	52471561	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3G	NM_020163	exon15	c.G1860T	p.G620G	CTCATCCCCTGGC	.	131.0	69.0	149.0	0.0	.	70
SEMA3G	56920	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	52474434	52474434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA3G	NM_020163	exon10	c.G1102T	p.G368W	AGGGCCCCCACTG	.	44.0	17.0	51.0	0.0	.	70
SEMA4D	10507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	92002518	92002518	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA4D	NM_006378	exon14	c.C1113G	p.I371M	GCTGTCGATGCAC	.	83.0	10.0	94.0	0.0	.	92
SEMA4F	10505	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	2	74907007	74907007	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA4F	NM_004263	exon14	c.G1984T	p.G662X	GGGGCGGGACTGG	.	57.0	22.0	70.0	0.0	.	93
SEMA6D	80031	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	48058822	48058822	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA6D	NM_020858	exon16	c.A1695G	p.G565G	TGAAGGATATGAA	.	88.0	44.0	105.0	0.0	.	138
SEMA7A	8482	broad.mit.edu;bcgsc.ca	37	15	74708242	74708242	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA7A	NM_003612	exon8	c.A886G	p.T296A	TGTTGGTGGCAGC	.	134.0	8.0	149.0	0.0	.	153
SEMA7A	8482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	74707046	74707046	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMA7A	NM_003612	exon10	c.A1136T	p.Q379L	GCCACCTGGAAGG	.	61.0	37.0	79.0	0.0	.	153
SEMG2	6407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43851485	43851485	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEMG2	NM_003008	exon2	c.T1212C	p.N404N	GGAAAATAAAATA	.	105.0	45.0	109.0	0.0	.	91
SERPINB2	5055	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61562574	61562574	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SERPINB2	NM_002575	exon3	c.T245C	p.M82T	GGTTCATGCAGCA	.	75.0	24.0	69.0	0.0	.	226
SERPINB3	6317	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61322962	61322962	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SERPINB3	NM_006919	exon8	c.C1102G	p.P368A	GGAAAGGGTGATT	.	105.0	53.0	97.0	1.0	.	228
SETD4	54093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	37408515	37408515	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SETD4	NM_017438	exon11	c.T1223C	p.I408T	TGGTTTATCAGGG	.	86.0	35.0	100.0	0.0	.	154
SEZ6L2	26470	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	29906726	29906726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEZ6L2	NM_001243332	exon5	c.G707T	p.G236V	GGGGATCCCCCAC	.	74.0	34.0	80.0	0.0	.	92
SEZ6L	23544	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	26688929	26688929	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SEZ6L	NM_021115	exon2	c.A652T	p.R218W	CCCCAGAGGCCAG	.	84.0	38.0	156.0	0.0	.	95
SF1	7536	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	64536751	64536751	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SF1	NM_001178030	exon7	c.G1098T	p.K366N	CTGCATCTTCCGT	.	126.0	51.0	131.0	0.0	.	227
SFMBT2	57713	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	10	7213990	7213990	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SFMBT2	NM_001029880	exon19	c.T2282C	p.V761A	AGGGTGACGGCCC	.	27.0	13.0	12.0	0.0	.	141
SFSWAP	6433	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	132239947	132239947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SFSWAP	NM_001261411	exon10	c.C1471T	p.P491S	CTGCAGCCGTGGC	.	18.0	9.0	31.0	0.0	.	91
SGCB	6443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	52890300	52890300	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGCB	NM_000232	exon6	c.T780G	p.S260S	CATCACAGATCCA	.	84.0	34.0	80.0	0.0	.	90
SGCG	6445	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	13	23898515	23898515	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGCG	NM_000231	exon8	c.T711A	p.L237L	TGTGCTTGATGCT	.	38.0	17.0	48.0	0.0	.	90
SGIP1	84251	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	67148048	67148048	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGIP1	NM_032291	exon15	c.C1311T	p.T437T	GACCACCAGTGGT	.	159.0	60.0	162.0	0.0	.	93
SGK1	6446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	134638546	134638546	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SGK1	NM_001143676	exon1	c.A53G	p.Q18R	AAAAATTGGAAGG	.	93.0	37.0	138.0	0.0	.	981
SH2D3C	10044	broad.mit.edu;ucsc.edu	37	9	130536280	130536280	+	Silent	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH2D3C	NM_170600	exon2	c.G504C	p.V168V	TGAGTGCACGTCC	.	32.0	4.0	80.0	0.0	.	228
SH3GL2	6456	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	17793437	17793437	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3GL2	NM_003026	exon8	c.T801A	p.T267T	TCCAACTGGAGAC	.	121.0	61.0	135.0	0.0	.	91
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110053581	110053581	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3RF3	NM_001099289	exon7	c.G1807T	p.A603S	AGCCAAGCCCGGA	.	155.0	56.0	189.0	0.0	.	24
SH3RF3	344558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	110259210	110259210	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3RF3	NM_001099289	exon10	c.A2611G	p.T871A	GGCCGCACAGGCC	.	32.0	12.0	46.0	0.0	.	24
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148406142	148406142	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SH3TC2	NM_024577	exon12	c.A3046T	p.T1016S	TGGCGGTATTTAG	.	126.0	58.0	167.0	0.0	.	92
SHANK1	50944	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51189492	51189492	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHANK1	NM_016148	exon21	c.2577+2T>C	.	CCGCCTACCTCAG	.	19.0	9.0	45.0	0.0	.	153
SHISA3	152573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	42403330	42403330	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHISA3	NM_001080505	exon2	c.C579A	p.P193P	ACCGCCCCCGCCA	.	63.0	32.0	57.0	0.0	.	70
SHPRH	257218	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	146276324	146276324	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SHPRH	NM_173082	exon2	c.A135T	p.P45P	TGAACCTGGGCAG	.	35.0	14.0	55.0	0.0	.	92
SI	6476	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	164739156	164739156	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SI	NM_001041	exon27	c.A3115G	p.K1039E	TCTTCTTTTGGGG	.	91.0	41.0	106.0	0.0	.	104
SIDT2	51092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117054562	117054562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIDT2	NM_001040455	exon7	c.G770A	p.G257E	CCTGCGGGGGCTC	.	44.0	21.0	81.0	0.0	.	90
SIGLEC11	114132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50453266	50453266	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC11	NM_052884	exon11	c.T2058A	p.L686L	CAATTGAAGCCCA	.	71.0	27.0	99.0	0.0	.	94
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52003208	52003208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC12	NM_053003	exon2	c.C774A	p.N258K	TATGTAGTTCCAT	.	60.0	29.0	85.0	0.0	.	96
SIGLEC12	89858	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	52004872	52004872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC12	NM_053003	exon1	c.G116T	p.C39F	GAGACACACAGGC	.	50.0	22.0	88.0	0.0	.	96
SIGLEC6	946	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	19	52023460	52023460	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC6	NM_198846	exon6	c.A1062T	p.X354C	CCAGCCTCAGCAG	.	49.0	17.0	73.0	0.0	.	91
SIGLEC8	27181	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51958812	51958812	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIGLEC8	NM_014442	exon4	c.C911T	p.P304L	CGTGAGGGGCACA	.	46.0	26.0	73.0	0.0	.	94
SIGLECL1	284369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	51768725	51768725	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_173635	exon3	c.A126T	p.G42G	GATGGGAGGAGTC	.	87.0	34.0	116.0	0.0	.	.
SIPA1L1	26037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	72200517	72200517	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIPA1L1	NM_015556	exon19	c.A5059G	p.K1687E	GCTGCCAAAGCCT	.	34.0	13.0	31.0	0.0	.	156
SIPA1L2	57568	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	232577103	232577103	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIPA1L2	NM_020808	exon12	c.T3576A	p.G1192G	ATAGGAACCCAGG	.	20.0	20.0	32.0	0.0	.	95
SIRPB1	10326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	1551660	1551660	+	Missense_Mutation	SNP	A	A	T	rs201191774	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIRPB1	NM_006065	exon4	c.T875A	p.V292E	CGGGACACATTTC	.	145.0	40.0	96.0	0.0	A|1.000;G|0.000	91
SIRT6	51548	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	4175099	4175099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIRT6	NM_016539	exon7	c.A664T	p.S222C	TCCCGCTGGGCCG	.	35.0	19.0	58.0	0.0	.	227
SIX2	10736	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	45235999	45235999	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SIX2	NM_016932	exon1	c.A251T	p.Q84L	AGCTGCTGCAGCT	.	47.0	17.0	48.0	0.0	.	91
SKIV2L	6499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	31935153	31935153	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SKIV2L	NM_006929	exon21	c.A2582T	p.Q861L	TCCTACAGGTGAG	.	108.0	46.0	83.0	0.0	.	290
SLAMF1	6504	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	160582368	160582368	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLAMF1	NM_003037	exon6	c.T867C	p.P289P	CTGAAGAGGCTAC	.	101.0	67.0	40.0	0.0	.	154
SLC12A3	6559	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	56936357	56936357	+	Missense_Mutation	SNP	C	C	A	rs13306666	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A3	NM_000339	exon24	c.C2820A	p.N940K	TGTCAACGAGATG	.	27.0	24.0	89.0	0.0	C|0.998;T|0.002	155
SLC12A5	57468	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	44684872	44684872	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A5	NM_001134771	exon22	c.A2940G	p.E980E	CCCAGAAGAGACG	.	88.0	33.0	99.0	0.0	.	156
SLC12A7	10723	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1053467	1053467	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC12A7	NM_006598	exon23	c.A3157T	p.N1053Y	TACAGTTCTCGTC	.	58.0	25.0	78.0	0.0	.	138
SLC13A4	26266	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	135378973	135378973	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC13A4	NM_012450	exon10	c.T1030A	p.C344S	GAGAGCAGGTCTC	.	53.0	29.0	31.0	0.0	.	90
SLC16A12	387700	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	91198482	91198482	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC16A12	NM_213606	exon6	c.T907C	p.Y303H	CCAAGTACACAAA	.	60.0	41.0	119.0	0.0	.	69
SLC16A14	151473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	230911189	230911189	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC16A14	NM_152527	exon4	c.C653A	p.P218Q	TCGTTTGGGTTTT	.	107.0	51.0	114.0	0.0	.	96
SLC18A2	6571	broad.mit.edu;bcgsc.ca	37	10	119029609	119029609	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC18A2	NM_003054	exon14	c.T1214C	p.I405T	TGCCTATCATGGG	.	76.0	6.0	106.0	0.0	.	90
SLC1A6	6511	broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	15065125	15065125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC1A6	NM_005071	exon7	c.A1186G	p.I396V	AGGTGATGGGCAG	.	19.0	11.0	29.0	0.0	.	186
SLC1A6	6511	ucsc.edu;bcgsc.ca;mdanderson.org	37	19	15065140	15065140	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC1A6	NM_005071	exon7	c.T1171A	p.S391T	TTGCCGAGCTGGG	.	16.0	6.0	26.0	0.0	.	186
SLC22A12	116085	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64359432	64359432	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC22A12	NM_001276326	exon1	c.402+2T>A	.	CCAAGGTAGGGCC	.	21.0	11.0	28.0	0.0	.	91
SLC22A8	9376	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	62763203	62763203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC22A8	NM_001184732	exon7	c.G974A	p.R325H	GTCATGCGGCGCA	.	65.0	28.0	107.0	0.0	.	93
SLC23A2	9962	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4913132	4913132	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC23A2	NM_203327	exon3	c.A77T	p.E26V	TTTGCCTCGTCTT	.	83.0	30.0	81.0	0.0	.	92
SLC26A4	5172	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	107329628	107329628	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A4	NM_000441	exon9	c.A1132C	p.T378P	GATTACACCATCG	.	68.0	24.0	90.0	1.0	.	96
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	92401631	92401631	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A7	NM_134266	exon16	c.T1741A	p.F581I	TTTACCTTTTTTG	.	71.0	34.0	113.0	0.0	.	92
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205884091	205884091	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A9	NM_134325	exon22	c.T2593C	p.Y865H	GCTTGTACAGCAG	.	40.0	35.0	110.0	0.0	.	92
SLC26A9	115019	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	205897161	205897161	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC26A9	NM_134325	exon9	c.T970A	p.S324T	CAGGCGACACCGG	.	32.0	28.0	58.0	0.0	.	92
SLC29A4	222962	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	7	5336593	5336593	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC29A4	NM_153247	exon7	c.A646G	p.S216G	TCTCTGAGCCGCA	.	24.0	10.0	18.0	0.0	.	515
SLC2A4	6517	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7189182	7189182	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC2A4	NM_001042	exon10	c.C1281T	p.N427N	CTCCAACTGGACG	.	50.0	44.0	111.0	0.0	.	90
SLC30A5	64924	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	68423913	68423913	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC30A5	NM_022902	exon15	c.A2081G	p.H694R	CAATTCATATACA	.	66.0	27.0	73.0	0.0	.	226
SLC34A1	6569	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	176814993	176814993	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC34A1	NM_001167579	exon7	c.645-2A>T	.	CTGCCCAGGGCCT	.	48.0	27.0	69.0	0.0	.	91
SLC34A3	142680	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	140127698	140127698	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC34A3	NM_001177317	exon7	c.T598A	p.W200R	TTCAACTGGCTCA	.	26.0	22.0	59.0	0.0	.	90
SLC35D3	340146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	137245642	137245642	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC35D3	NM_001008783	exon2	c.T1059A	p.G353G	AGCAGGTGGCCCC	.	39.0	14.0	51.0	0.0	.	91
SLC35F2	54733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	107673871	107673871	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC35F2	NM_017515	exon7	c.C795A	p.F265L	TGCCACGAACAGC	.	191.0	77.0	242.0	0.0	.	90
SLC36A2	153201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	150704910	150704910	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC36A2	NM_181776	exon8	c.T947A	p.L316Q	TAGCCCAGAGCCG	.	40.0	17.0	69.0	0.0	.	91
SLC36A4	120103	ucsc.edu;bcgsc.ca	37	11	92899082	92899082	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC36A4	NM_152313	exon9	c.867+2T>C	.	ATTCTTACCACTC	.	26.0	4.0	32.0	0.0	.	93
SLC38A2	54407	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46760941	46760941	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC38A2	NM_018976	exon6	c.A399G	p.L133L	TTCATATAATAAA	.	150.0	16.0	183.0	0.0	.	226
SLC39A12	221074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	18250689	18250689	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC39A12	NM_152725	exon3	c.A441C	p.L147L	CAGCCTACTGAGC	.	129.0	60.0	133.0	0.0	.	154
SLC45A1	50651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	8390821	8390821	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC45A1	NM_001080397	exon4	c.A1268T	p.E423V	GCAGAGAGGGTGC	.	73.0	23.0	98.0	0.0	.	494
SLC4A10	57282	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	162813739	162813739	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC4A10	NM_001178015	exon20	c.A2782T	p.S928C	ATGACCAGTATTC	.	82.0	29.0	101.0	0.0	.	229
SLC4A8	9498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51865212	51865212	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC4A8	NM_001039960	exon14	c.A1800G	p.L600L	CTCCCTAATTTGC	.	59.0	23.0	61.0	0.0	.	95
SLC52A2	79581	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	145584307	145584307	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_024531	exon4	c.G1059A	p.L353L	CTACCTGATGGCG	.	18.0	10.0	18.0	0.0	.	.
SLC52A3	113278	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	744623	744623	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_033409	exon3	c.G592T	p.A198S	GGAGGGCGGACAC	.	63.0	17.0	52.0	0.0	.	.
SLC5A8	160728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	101551063	101551063	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC5A8	NM_145913	exon15	c.T1827A	p.R609R	TCACAAACGAGTC	.	73.0	8.0	101.0	0.0	.	90
SLC6A3	6531	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1414820	1414820	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC6A3	NM_001044	exon8	c.A1142G	p.D381G	GCCACGTCCCCGA	.	40.0	18.0	56.0	0.0	.	157
SLC7A13	157724	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	87229922	87229922	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLC7A13	NM_138817	exon3	c.A956T	p.Q319L	CCCTCTTGGCTTG	.	116.0	55.0	134.0	0.0	.	90
SLC9B1	150159	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	4	103822469	103822469	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_139173	exon12	c.T1353A	p.A451A	TTCTAGAGCCAGA	.	202.0	49.0	213.0	0.0	.	.
SLC9C1	285335	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	111888053	111888053	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_183061	exon24	c.A3042G	p.L1014L	ATAAGATAAGTGT	.	75.0	28.0	68.0	0.0	.	.
SLIT2	9353	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	20591288	20591288	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLIT2	NM_004787	exon30	c.T3110A	p.L1037Q	AGAAGCTGGACTT	.	86.0	34.0	96.0	0.0	.	521
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	144904336	144904336	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLITRK2	NM_001144005	exon5	c.A393T	p.L131L	CTTCCTAGGCCTG	.	58.0	52.0	102.0	0.0	.	136
SLITRK5	26050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	88330290	88330290	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SLITRK5	NM_015567	exon2	c.A2647C	p.S883R	CCGTGCAGCCCCG	.	132.0	58.0	139.0	0.0	.	94
SMARCA4	6597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	11101907	11101907	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMARCA4	NM_003072	exon8	c.A1327C	p.K443Q	CGCAGCAAGCGCC	.	90.0	33.0	94.0	0.0	.	1523
SMARCC1	6599	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	47651729	47651729	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMARCC1	NM_003074	exon26	c.A2870G	p.Q957R	TCCATTTGCTGTC	.	65.0	31.0	64.0	0.0	.	228
SMOX	54498	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	4168039	4168039	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMOX	NM_001270691	exon8	c.C1743T	p.F581F	CCTCTTCCAGCAG	.	72.0	33.0	107.0	0.0	.	153
SMPD4	55627	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130918769	130918769	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMPD4	NM_017951	exon11	c.A1058G	p.H353R	TAGGCGTGGAGGG	.	137.0	51.0	201.0	1.0	.	90
SMPD4	55627	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	130939136	130939136	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SMPD4	NM_017751	exon1	c.A39T	p.P13P	CAGAGATGGAAGC	.	63.0	32.0	82.0	0.0	.	90
SNAPC3	6619	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	15447091	15447091	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNAPC3	NM_001039697	exon5	c.583-2A>T	.	ACTTTTAGCACAA	.	132.0	57.0	121.0	0.0	.	186
SNCAIP	9627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	121780395	121780395	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNCAIP	NM_005460	exon8	c.T1560C	p.S520S	GGCCTCTCAAGTG	.	80.0	29.0	113.0	0.0	.	92
SND1-IT1	27099	ucsc.edu;mdanderson.org	37	7	127638003	127638003	+	RNA	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	.	TCCCACAGCACCC	.	76.0	41.0	79.0	0.0	.	.
SNRK	54861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	43389366	43389366	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNRK	NM_017719	exon7	c.A1615G	p.S539G	AGCTGCAGTAGTT	.	158.0	80.0	176.0	0.0	.	815
SNRNP200	23020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	96966755	96966755	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNRNP200	NM_014014	exon5	c.A611G	p.Q204R	TCAAACTGCACAT	.	132.0	53.0	119.0	0.0	.	162
SNX19	399979	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	130748331	130748331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNX19	NM_014758	exon11	c.G2965T	p.G989C	AGACACCCATCCT	.	81.0	40.0	116.0	0.0	.	229
SNX8	29886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	2317782	2317782	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SNX8	NM_013321	exon2	c.A253G	p.K85E	CCTTCTTCTCCGG	.	64.0	25.0	76.0	0.0	.	290
SOAT2	8435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53515148	53515148	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOAT2	NM_003578	exon12	c.A1199G	p.D400G	TCCATGACTGGCT	.	92.0	34.0	91.0	0.0	.	91
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35406236	35406236	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_199181	exon16	c.2994-2A>G	.	TCTGGCTCTCTTC	.	53.0	15.0	58.0	0.0	.	.
SOGA1	140710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	35423004	35423004	+	Splice_Site	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_199181	exon15	c.2769-2A>T	.	TGGTTCTGCGAAG	.	66.0	35.0	77.0	0.0	.	.
SOGA3	387104	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	127837007	127837007	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001012279	exon2	c.A753T	p.K251N	TCCTTCTTTCCAG	.	38.0	19.0	27.0	0.0	.	.
SORCS2	57537	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	7730109	7730109	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SORCS2	NM_020777	exon22	c.A2902G	p.K968E	TTTTCCAAGGAGC	.	47.0	18.0	72.0	0.0	.	91
SOX30	11063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	157065688	157065688	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SOX30	NM_178424	exon4	c.A1430T	p.Q477L	GGGCTCTGGACTG	.	55.0	29.0	71.0	0.0	.	91
SPAM1	6677	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	123593884	123593884	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPAM1	NM_153189	exon3	c.G260T	p.G87V	GGCAAGGTGTTAC	.	89.0	43.0	105.0	0.0	.	94
SPATA16	83893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	172643281	172643281	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA16	NM_031955	exon7	c.T1083A	p.D361E	TTGAAGATCTGAA	.	163.0	75.0	201.0	0.0	.	94
SPATA31E1	286234	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	90501957	90501957	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_178828	exon4	c.T2555C	p.L852P	CAGACCTCCAGTC	.	63.0	21.0	79.0	0.0	.	.
SPATA5	166378	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123859404	123859404	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA5	NM_145207	exon8	c.A1458T	p.S486S	TGGTTCAGTAAGT	.	52.0	17.0	80.0	0.0	.	90
SPATA6	54558	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	48764441	48764441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPATA6	NM_019073	exon13	c.A1411T	p.R471W	AGTTCCTGTACAT	.	79.0	23.0	111.0	0.0	.	91
SPEF2	79925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	35709050	35709050	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEF2	NM_024867	exon19	c.T2666A	p.V889D	TTGAAGTTGAGAA	.	218.0	81.0	243.0	0.0	.	26
SPEG	10290	broad.mit.edu;mdanderson.org	37	2	220313082	220313082	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEG	NM_005876	exon4	c.T1202A	p.L401Q	GCATCCTGGACAA	.	20.0	8.0	25.0	0.0	.	383
SPEG	10290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	220342465	220342465	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPEG	NM_005876	exon21	c.G4784T	p.R1595M	GAGGAAGGAGACT	.	75.0	29.0	91.0	0.0	.	383
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47679227	47679227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPOP	NM_001007228	exon9	c.A980G	p.Y327C	ACTCACTAGTTGA	.	76.0	37.0	99.0	0.0	.	660
SPOP	8405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	47699405	47699405	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPOP	NM_001007228	exon3	c.A103T	p.M35L	TCCACATGTAGGA	.	120.0	55.0	148.0	0.0	.	660
SPP2	6694	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	234978570	234978570	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPP2	NM_006944	exon7	c.551-2A>G	.	ATCTTTAGGGATC	.	71.0	37.0	72.0	0.0	.	90
SPRR1A	6698	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152957864	152957864	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR1A	NM_001199828	exon2	c.T158C	p.V53A	CCAAAGTGCCTGA	.	215.0	163.0	115.0	1.0	.	68
SPRR2F	6705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	153085091	153085091	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR2F	NM_001014450	exon2	c.A119G	p.K40R	GGACACTTTGATG	.	83.0	9.0	52.0	0.0	.	68
SPRR4	163778	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	152944426	152944426	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPRR4	NM_173080	exon2	c.G60T	p.Q20H	CCAGCAGCAGCAA	.	282.0	224.0	148.0	0.0	.	68
SPSB4	92369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	140785585	140785585	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPSB4	NM_080862	exon2	c.G639T	p.V213V	GGTGGTGAGTGCC	.	77.0	43.0	81.0	0.0	.	226
SPTA1	6708	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	158627334	158627334	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTA1	NM_003126	exon19	c.C2738T	p.T913I	ATCCATGTTTCTG	.	162.0	41.0	85.0	0.0	.	142
SPTB	6710	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	65267543	65267543	+	Silent	SNP	A	A	G	rs115882528	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTB	NM_001024858	exon7	c.T807C	p.Y269Y	CACCACATAGGTG	.	110.0	47.0	134.0	0.0	A|0.998;G|0.002	100
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	54874335	54874335	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SPTBN1	NM_003128	exon24	c.C4934A	p.A1645E	ACTATGCAGAGAC	.	58.0	26.0	77.0	0.0	.	140
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9068619	9068619	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRGAP3	NM_014850	exon13	c.G1600A	p.G534R	GCTTACCATATAA	.	67.0	26.0	87.0	0.0	.	344
SRGAP3	9901	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	9068641	9068641	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRGAP3	NM_014850	exon13	c.C1578G	p.C526W	ACGGATGCAGCTC	.	66.0	27.0	92.0	0.0	.	344
SRRM1	10250	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	24996026	24996026	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM1	NM_005839	exon14	c.A2152G	p.T718A	CCAAGTACTAGGC	.	243.0	115.0	327.0	0.0	.	93
SRRM4	84530	broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	119594391	119594391	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon13	c.A1624T	p.S542C	AGCAGTAGCCGCT	.	109.0	53.0	136.0	1.0	.	2
SRRM4	84530	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119568581	119568581	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon8	c.C713A	p.S238Y	CCCAGTCCAGTCG	.	25.0	7.0	21.0	0.0	.	2
SRRM4	84530	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	119588876	119588876	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRRM4	NM_194286	exon10	c.C1131A	p.V377V	TTTGGTCCCATCC	.	92.0	42.0	86.0	0.0	.	2
SRXN1	140809	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	633625	633625	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SRXN1	NM_080725	exon1	c.A205T	p.I69F	CCCGGATCGTGTC	.	32.0	10.0	21.0	0.0	.	91
SSMEM1	0	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	129847933	129847933	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_145268	exon1	c.G183T	p.W61C	TGTCTGGGTAGGA	.	70.0	37.0	57.0	0.0	.	.
SSUH2	51066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	3	8661623	8661623	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001256748	exon12	c.T1059A	p.Y353X	AGTGCCATAGATG	.	96.0	38.0	131.0	0.0	.	.
STAB1	23166	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	52538054	52538054	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAB1	NM_015136	exon10	c.A1033T	p.R345W	GTGTGCAGGGAAA	.	52.0	27.0	56.0	0.0	.	139
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	104107485	104107485	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAB2	NM_017564	exon42	c.C4476A	p.T1492T	AACCACCCCAGGA	.	93.0	36.0	89.0	0.0	.	104
STAC	6769	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36534678	36534678	+	Silent	SNP	T	T	C	rs199675015		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAC	NM_003149	exon6	c.T723C	p.N241N	AGCCAATGGGCCA	.	69.0	36.0	100.0	0.0	T|0.999;C|0.001	94
STAP2	55620	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	4333984	4333984	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STAP2	NM_001013841	exon2	c.A160T	p.N54Y	CCCGATTGCTATT	.	67.0	36.0	65.0	0.0	.	90
STC2	8614	broad.mit.edu;ucsc.edu;mdanderson.org	37	5	172744894	172744894	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STC2	NM_003714	exon4	c.G865T	p.E289X	CCCACTCGCTGCT	.	49.0	22.0	76.0	2.0	.	93
STIL	6491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47717102	47717102	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STIL	NM_001048166	exon17	c.A3573G	p.A1191A	CGTATCTGCGTTG	.	85.0	44.0	97.0	0.0	.	659
STK4	6789	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	43607128	43607128	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STK4	NM_006282	exon3	c.A161T	p.Q54L	CCGGCCAGATTGT	.	60.0	24.0	72.0	0.0	.	767
STON1	11037	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	48808054	48808054	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STON1	NM_001198595	exon3	c.282delC	p.I94fs	TGGCATCCCCAAA	.	111.0	50.0	134.0	0.0	.	91
STRC	161497	broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	43900119	43900119	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STRC	NM_153700	exon18	c.T3736G	p.W1246G	TTGTCCATTCTGG	.	314.0	128.0	344.0	0.0	.	90
STT3A	3703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	125489978	125489978	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STT3A	NM_152713	exon17	c.A2036G	p.E679G	TCCTGGAGGAAGC	.	84.0	32.0	98.0	0.0	.	90
STX16	8675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	57246218	57246218	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STX16	NM_001001433	exon7	c.A657G	p.T219T	TTTTACAGAGGAC	.	72.0	27.0	87.0	0.0	.	91
STX6	10228	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	180953835	180953835	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STX6	NM_005819	exon7	c.A669G	p.A223A	TACTTTTGCAAGT	.	114.0	74.0	73.0	0.0	.	91
STXBP3	6814	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109321954	109321954	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STXBP3	NM_007269	exon9	c.C731A	p.P244H	TTGATCCTGTGTC	.	96.0	42.0	90.0	0.0	.	93
STXBP5L	9515	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	120871322	120871322	+	Splice_Site	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	STXBP5L	NM_014980	exon8	c.670-2A>G	.	TTTTCCAGCTGCT	.	47.0	20.0	72.0	0.0	.	77
SUGT1	10910	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	13	53227239	53227239	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUGT1	NM_001130912	exon2	c.96+1G>A	.	TTAGAGGTGAGAG	.	69.0	23.0	84.0	0.0	.	226
SUN2	25777	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	39137564	39137564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUN2	NM_001199579	exon10	c.G1144A	p.A382T	TCAGGGCAGACAG	.	19.0	7.0	32.0	0.0	.	154
SUPV3L1	6832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	10	70968759	70968759	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUPV3L1	NM_003171	exon15	c.A2329T	p.R777X	GGGACGAGAAGAA	.	56.0	20.0	56.0	0.0	.	227
SUSD2	56241	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	24584255	24584255	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUSD2	NM_019601	exon14	c.G2404A	p.A802T	GCGGTTGCGCTCG	.	31.0	18.0	36.0	0.0	.	91
SUV39H1	6839	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	X	48558575	48558575	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SUV39H1	NM_003173	exon3	c.A259T	p.K87X	ATCCTCAAGCAGT	.	115.0	104.0	135.0	1.0	.	226
SYDE2	84144	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	85647970	85647970	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYDE2	NM_032184	exon3	c.A2355G	p.R785R	AAGACCTCTAGGT	.	181.0	10.0	209.0	0.0	.	70
SYN2	6854	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	12209886	12209886	+	RNA	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYN2	.	.	.	.	AAACTGTGGGTGG	.	72.0	31.0	94.0	1.0	.	24
SYN3	8224	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32914296	32914296	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYN3	NM_003490	exon12	c.T1344C	p.P448P	GGGCTGAGGAGAC	.	25.0	12.0	22.0	0.0	.	92
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	152831366	152831366	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNE1	NM_033071	exon8	c.G564A	p.K188K	AGCCTTCTTAGCA	.	101.0	9.0	129.0	0.0	.	607
SYNE1	23345	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	152555815	152555815	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNE1	NM_182961	exon111	c.A20517G	p.L6839L	AGCATTTAGATGA	.	69.0	31.0	97.0	0.0	.	607
SYNPO2	171024	broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	119953093	119953093	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNPO2	NM_001128934	exon4	c.A3163T	p.T1055S	ATTCCCACCTCGC	.	112.0	53.0	173.0	1.0	.	92
SYNPO2L	79933	broad.mit.edu;bcgsc.ca;mdanderson.org	37	10	75407619	75407619	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYNPO2L	NM_001114133	exon4	c.T1791A	p.P597P	TGGGGCAGGCGCC	.	57.0	22.0	59.0	1.0	.	91
SYT10	341359	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	33532888	33532888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT10	NM_198992	exon6	c.A1379G	p.H460R	TCATTGTGTCCTA	.	68.0	35.0	93.0	0.0	.	92
SYT11	23208	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	155838371	155838371	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT11	NM_152280	exon2	c.A650G	p.K217R	TGCGGAAGACCCT	.	219.0	72.0	144.0	0.0	.	92
SYT5	6861	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	55689571	55689571	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYT5	NM_003180	exon3	c.T245C	p.I82T	TTGTCTATGTAAC	.	21.0	13.0	37.0	0.0	.	90
SYTL2	54843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	85436399	85436399	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SYTL2	NM_206927	exon1	c.C1101A	p.P367P	ATCCTGGGGAAAA	.	53.0	29.0	58.0	0.0	.	137
SZT2	23334	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43907744	43907744	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SZT2	NM_015284	exon55	c.C7645T	p.R2549W	GCTGAGCGGCATC	.	83.0	10.0	103.0	0.0	.	144
SZT2	23334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	43908181	43908181	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	SZT2	NM_015284	exon57	c.G7872T	p.L2624L	TCGCCTGGTGCAG	.	67.0	28.0	66.0	0.0	.	144
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	166578331	166578331	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	T	NM_003181	exon5	c.A625T	p.K209X	TGTACTTAATTTT	.	59.0	34.0	108.0	0.0	.	516
TAC3	6866	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	57407370	57407370	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAC3	NM_013251	exon3	c.C200A	p.A67D	GTGCTAGCCTGGC	.	43.0	19.0	48.0	0.0	.	92
TAF4B	6875	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	23854702	23854702	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAF4B	NM_005640	exon4	c.T673C	p.S225P	AAGCCTTCAAGTT	.	164.0	71.0	186.0	0.0	.	71
TAGAP	117289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	159463252	159463252	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAGAP	NM_138810	exon5	c.T173G	p.L58R	CAGGACAGCACCT	.	105.0	39.0	131.0	0.0	.	91
TANC2	26115	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61432399	61432399	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TANC2	NM_025185	exon12	c.G2008T	p.V670L	TATCTAGTGTTAA	.	91.0	42.0	108.0	1.0	.	24
TARSL2	123283	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	102252089	102252089	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TARSL2	NM_152334	exon5	c.A806G	p.E269G	CTGTCTTCAATGA	.	67.0	15.0	74.0	0.0	.	92
TAS1R1	80835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	6639185	6639185	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAS1R1	NM_138697	exon6	c.C2067T	p.A689A	AGCGGCCCAGCTG	.	92.0	62.0	113.0	0.0	.	516
TAS2R7	50837	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	10954328	10954328	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAS2R7	NM_023919	exon1	c.A842G	p.H281R	AATGAATGACTTG	.	104.0	43.0	133.0	0.0	.	91
TAX1BP1	8887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	27833956	27833956	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TAX1BP1	NM_006024	exon11	c.T1425C	p.N475N	TAATAATGTCTTC	.	221.0	94.0	224.0	0.0	.	153
TBC1D22A	25771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	47189485	47189485	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBC1D22A	NM_014346	exon3	c.C207A	p.S69R	TACCAGCGATGCC	.	66.0	37.0	82.0	0.0	.	91
TBCD	6904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	80887026	80887026	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBCD	NM_005993	exon31	c.A2731T	p.S911C	CAGGCCAGTGAGA	.	18.0	15.0	32.0	0.0	.	22
TBCK	93627	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	107154797	107154797	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBCK	NM_001163436	exon16	c.A1460T	p.H487L	TTGGCATGAATAG	.	244.0	117.0	281.0	0.0	.	336
TBL3	10607	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2026270	2026270	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TBL3	NM_006453	exon13	c.A1247T	p.Q416L	TGGCTCAGGGTTC	.	63.0	29.0	87.0	0.0	.	90
TCF7	6932	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	133451714	133451714	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCF7	NM_003202	exon3	c.A431T	p.Q144L	AGCCGCAGCCCCC	.	76.0	35.0	149.0	0.0	.	90
TCHH	7062	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	152084202	152084202	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCHH	NM_007113	exon3	c.C1491A	p.R497R	CTGCTCGCGCCTC	.	48.0	11.0	23.0	0.0	.	72
TCP11L2	255394	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	106734764	106734764	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCP11L2	NM_152772	exon9	c.T1303A	p.W435R	CCTATCTGGTCCT	.	66.0	39.0	81.0	0.0	.	93
TCTE1	202500	broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	44253945	44253945	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCTE1	NM_182539	exon3	c.A602G	p.Q201R	GGGAGCTGCACCG	.	40.0	14.0	46.0	1.0	.	94
TCTN1	79600	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	111066600	111066600	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TCTN1	NM_024549	exon4	c.A501G	p.P167P	TAATCCAGAAGTA	.	43.0	23.0	47.0	0.0	.	90
TDRD1	56165	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	115947807	115947807	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TDRD1	NM_198795	exon2	c.A217T	p.T73S	GAGCAAACCAAAC	.	97.0	83.0	178.0	1.0	.	90
TEKT2	27285	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	36551473	36551473	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEKT2	NM_014466	exon4	c.A319T	p.N107Y	GCCAAGAACCTGC	.	115.0	43.0	154.0	0.0	.	90
TELO2	9894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	1551726	1551726	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TELO2	NM_016111	exon11	c.G1424A	p.G475D	TGGATGGCGGCGT	.	20.0	11.0	25.0	0.0	.	90
TENM3	55714	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	183549876	183549876	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001080477	exon4	c.A822T	p.A274A	AATGGCATCTGGC	.	102.0	73.0	268.0	0.0	.	.
TENM4	26011	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	78614413	78614413	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001098816	exon7	c.G649C	p.D217H	AGTGGTCCGTGGG	.	19.0	10.0	39.0	0.0	.	.
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	20871535	20871535	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEP1	NM_007110	exon8	c.1266+1G>T	.	GACTCACCTTTCT	.	106.0	51.0	121.0	0.0	.	95
TEP1	7011	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	20851687	20851687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TEP1	NM_007110	exon26	c.G3827T	p.G1276V	AGCTGCCCATTCT	.	91.0	47.0	99.0	0.0	.	95
TERT	7015	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	1254534	1254534	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TERT	NM_198253	exon15	c.C3244T	p.L1082L	GAGTCAGCTTGAG	.	56.0	25.0	78.0	0.0	.	1272
TET1	80312	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	70332525	70332525	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TET1	NM_030625	exon2	c.A430G	p.I144V	TATAAGATACTCC	.	55.0	41.0	78.0	0.0	.	663
TFAP2D	83741	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	50712859	50712859	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TFAP2D	NM_172238	exon6	c.G923T	p.C308F	ACACTTGTGAAAC	.	203.0	91.0	179.0	0.0	.	159
TFCP2	7024	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	51492562	51492562	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TFCP2	NM_001173452	exon13	c.T1416C	p.D472D	TACCTCATCACTG	.	55.0	24.0	46.0	0.0	.	91
TGM7	116179	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	43571862	43571862	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TGM7	NM_052955	exon10	c.T1639G	p.W547G	GCCTCCAGAAGGG	.	37.0	11.0	49.0	0.0	.	92
THEG	51298	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	362299	362299	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	THEG	NM_016585	exon8	c.C1041T	p.G347G	GTTGAGGCCCTTG	.	54.0	20.0	96.0	0.0	.	91
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128150865	128150865	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	THEMIS	NM_001010923	exon3	c.A465C	p.A155A	ATTCCTTGCTACT	.	74.0	33.0	109.0	0.0	.	94
TIGD4	201798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	153691590	153691590	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TIGD4	NM_145720	exon2	c.T567C	p.Y189Y	CATTCGATAAAGC	.	108.0	48.0	160.0	0.0	.	91
TIMELESS	8914	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	56827889	56827889	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TIMELESS	NM_003920	exon2	c.A66G	p.G22G	AGTGTCTCCCTCC	.	96.0	38.0	147.0	0.0	.	159
TK1	7083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	76170929	76170929	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TK1	NM_003258	exon7	c.T616C	p.C206R	CTGGGCAGTTCTC	.	49.0	22.0	65.0	0.0	.	227
TLL2	7093	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	98145897	98145897	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLL2	NM_012465	exon15	c.A1928C	p.N643T	TTTTTGTTTGTGG	.	31.0	19.0	59.0	0.0	.	93
TLN1	7094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35724956	35724956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLN1	NM_006289	exon4	c.G229T	p.D77Y	TAGTGTCCTGTTA	.	62.0	21.0	86.0	0.0	.	609
TLN2	83660	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	63102125	63102125	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLN2	NM_015059	exon49	c.A6665C	p.Q2222P	TCCAGCAAGCATC	.	88.0	46.0	119.0	0.0	.	573
TLR10	81793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	38774823	38774823	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR10	NM_001017388	exon2	c.G2389C	p.E797Q	GAGACTCTTCATT	.	74.0	20.0	76.0	0.0	.	522
TLR4	7099	broad.mit.edu;ucsc.edu	37	9	120475741	120475741	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR4	NM_138554	exon3	c.A1335T	p.S445S	CCTATCACTCAGA	.	37.0	4.0	94.0	0.0	.	577
TLR7	51284	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12905637	12905637	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR7	NM_016562	exon3	c.T2010G	p.F670L	AGTTTTTGATGGT	.	46.0	32.0	61.0	0.0	.	564
TLR8	51311	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12939723	12939723	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR8	NM_138636	exon2	c.A2564T	p.D855V	ACTGGGATGTTTG	.	42.0	39.0	57.0	1.0	.	629
TLR8	51311	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	12938413	12938413	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TLR8	NM_138636	exon2	c.C1254A	p.S418S	TTTCTCCAATCTG	.	40.0	38.0	55.0	0.0	.	629
TMC7	79905	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	19033071	19033071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMC7	NM_024847	exon4	c.A581G	p.Y194C	CGAAATACAAGAT	.	103.0	37.0	109.0	0.0	.	93
TMEM105	284186	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79287489	79287489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM105	NM_178520	exon3	c.G352A	p.G118R	ACAGCCCCTTCAT	.	65.0	52.0	138.0	0.0	.	91
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	132948183	132948183	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM108	NM_023943	exon3	c.T28C	p.C10R	CTCTATTGCCAAC	.	44.0	14.0	60.0	0.0	.	94
TMEM108	66000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133099726	133099726	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM108	NM_023943	exon4	c.A1171T	p.R391W	CCCTCCAGGGTCT	.	66.0	29.0	69.0	0.0	.	94
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	130184613	130184613	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM132D	NM_133448	exon2	c.G710T	p.G237V	CAGTCCCCTCTCT	.	97.0	39.0	81.0	0.0	.	106
TMEM144	55314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	159174638	159174638	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM144	NM_018342	exon13	c.A997G	p.I333V	TGCATCATCTTGA	.	43.0	15.0	55.0	0.0	.	90
TMEM161A	54929	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19243552	19243552	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM161A	NM_001256766	exon4	c.G200A	p.G67D	CTAAGGCCATTGG	.	86.0	35.0	98.0	0.0	.	154
TMEM168	64418	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	112407617	112407617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM168	NM_022484	exon5	c.A1729G	p.I577V	CTTCAATATCTAC	.	84.0	27.0	122.0	0.0	.	91
TMEM211	255349	broad.mit.edu;bcgsc.ca	37	22	25331454	25331454	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon3	c.T236A	p.L79Q	CAACCCAGCCGGC	.	129.0	7.0	184.0	0.0	.	68
TMEM211	255349	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25334135	25334135	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon2	c.A108T	p.P36P	CACCCCTGGCATT	.	29.0	9.0	32.0	0.0	.	68
TMEM211	255349	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	25334227	25334227	+	Missense_Mutation	SNP	A	A	T	rs112354981	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM211	NM_001001663	exon2	c.T16A	p.W6R	GGAGCCAGCCTCC	.	33.0	16.0	26.0	0.0	A|0.500;G|0.500	68
TMEM222	84065	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	27648780	27648780	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM222	NM_032125	exon1	c.A92T	p.E31V	CGGCCGAGACGGA	.	182.0	101.0	196.0	0.0	.	90
TMEM232	642987	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	109904164	109904164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001039763	exon11	c.C1439T	p.A480V	TTGATTGCATTTT	.	82.0	15.0	113.0	0.0	.	.
TMEM247	388946	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	46706740	46706740	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001145051	exon1	c.A16G	p.R6G	GAGGACAGGGAGA	.	102.0	42.0	119.0	0.0	.	.
TMEM252	169693	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	71155621	71155621	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_153237	exon1	c.A110T	p.Q37L	CTCCCCTGACAGT	.	168.0	57.0	114.0	0.0	.	.
TMEM55B	90809	broad.mit.edu;mdanderson.org	37	14	20929468	20929468	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM55B	NM_001100814	exon1	c.A17G	p.E6G	GAACGCTCTCCAT	.	8.0	5.0	11.0	0.0	.	90
TMEM67	91147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	94798504	94798504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM67	NM_153704	exon13	c.G1342A	p.V448I	GATGCAGTAAGTG	.	55.0	20.0	51.0	0.0	.	92
TMEM74B	55321	broad.mit.edu;mdanderson.org	37	20	1162189	1162189	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_018354	exon2	c.T74C	p.M25T	GATGCCATTGGGA	.	25.0	5.0	18.0	0.0	.	.
TMEM8C	389827	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	136384125	136384125	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMEM8C	NM_001080483	exon3	c.A270T	p.E90D	CTTGGGTTCGTCG	.	22.0	17.0	68.0	0.0	.	68
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68789885	68789885	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS11A	NM_001114387	exon7	c.482-1G>T	.	TCATTGCTGAAAA	.	52.0	16.0	93.0	0.0	.	69
TMPRSS13	84000	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	117789167	117789167	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS13	NM_001206790	exon2	c.T408C	p.P136P	CCTGGCAGGAGAT	.	65.0	25.0	59.0	0.0	.	91
TMPRSS15	5651	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	19732132	19732132	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TMPRSS15	NM_002772	exon8	c.A822G	p.T274T	ATAATATGTATTA	.	188.0	86.0	188.0	0.0	.	160
TNFRSF11B	4982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	119936998	119936998	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF11B	NM_002546	exon5	c.T821A	p.I274N	AGGTCAATATCTG	.	58.0	31.0	80.0	0.0	.	651
TNFRSF13B	23495	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16852254	16852254	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF13B	NM_012452	exon3	c.T243C	p.H81H	CAGGAGATGGTCA	.	102.0	38.0	81.0	1.0	.	228
TNFRSF4	7293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	1146948	1146948	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNFRSF4	NM_003327	exon7	c.T821A	p.L274Q	TTGGCCAGGGTGG	.	52.0	23.0	85.0	0.0	.	227
TNK2	10188	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	195594061	195594061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNK2	NM_005781	exon13	c.G2961T	p.Q987H	AGCCCTCTGCACG	.	188.0	84.0	209.0	0.0	.	957
TNNI2	7136	broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	1861801	1861801	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNNI2	NM_001145841	exon3	c.A101T	p.E34V	AGGAGGAGAGCCG	.	18.0	16.0	71.0	2.0	.	90
TNRC18	84629	broad.mit.edu;mdanderson.org	37	7	5353216	5353216	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNRC18	NM_001080495	exon27	c.A7306T	p.K2436X	TGGGCTTGGGGCG	.	48.0	13.0	44.0	0.0	.	46
TNRC18	84629	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	5410083	5410083	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNRC18	NM_001080495	exon11	c.A4142C	p.Q1381P	AAGCTCTGCTCCA	.	47.0	20.0	51.0	0.0	.	46
TNS1	7145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218713037	218713037	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNS1	NM_022648	exon17	c.G1828T	p.A610S	CATGGGCATAGTG	.	91.0	32.0	100.0	0.0	.	156
TNS3	64759	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	47408179	47408179	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TNS3	NM_022748	exon17	c.A2064T	p.P688P	CGAGCCTGGGGAG	.	38.0	13.0	57.0	0.0	.	94
TOPBP1	11073	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	133372268	133372268	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TOPBP1	NM_007027	exon7	c.A843G	p.I281M	CTTGTATATGGAT	.	68.0	26.0	78.0	0.0	.	540
TP53	7157	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	7578235	7578235	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	TP53,bile_duct,carcinoma,0	TP53	NM_000546	exon6	c.A614G	p.Y205C	TCCAAATACTCCA	.	73.0	60.0	133.0	0.0	.	70225
TPM2	7169	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	35684745	35684745	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPM2	NM_003289	exon6	c.A623G	p.E208G	TGGGCCTCCAGGG	.	101.0	35.0	128.0	2.0	.	515
TPR	7175	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	186324666	186324666	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon17	c.A2047C	p.K683Q	CTTTTTTGTAGTT	.	202.0	10.0	93.0	0.0	.	228
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186291450	186291450	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon45	c.A6461T	p.H2154L	ACTTACTGAATTG	.	459.0	98.0	252.0	0.0	.	228
TPR	7175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	186327705	186327705	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPR	NM_003292	exon13	c.G1467C	p.M489I	TATTTCCATTCTT	.	120.0	79.0	78.0	0.0	.	228
TPTE	7179	broad.mit.edu;bcgsc.ca	37	21	10951410	10951410	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPTE	NM_199261	exon10	c.T302A	p.L101Q	AAGACCAGGAAAA	.	661.0	147.0	714.0	2.0	.	344
TPTE	7179	broad.mit.edu;bcgsc.ca;mdanderson.org	37	21	10908836	10908836	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TPTE	NM_199261	exon23	c.T1509A	p.I503I	ATTTTCAATAAAA	.	78.0	10.0	123.0	0.0	.	344
TRAK1	22906	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42226292	42226292	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAK1	NM_001265608	exon4	c.A479G	p.E160G	GGGAGGAGGTAAG	.	147.0	72.0	182.0	1.0	.	91
TRANK1	9881	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	36897302	36897302	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRANK1	NM_014831	exon12	c.A3779T	p.E1260V	TTATCCTCCTCAC	.	176.0	84.0	181.0	0.0	.	24
TRAP1	10131	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	3739091	3739091	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAP1	NM_016292	exon3	c.G295T	p.D99Y	CAATGTCCAAAAG	.	59.0	25.0	91.0	1.0	.	226
TRAPPC3	27095	broad.mit.edu;bcgsc.ca	37	1	36605744	36605744	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAPPC3	NM_001270894	exon2	c.C66G	p.T22T	ACCATAGGTCAGG	.	166.0	12.0	206.0	0.0	.	90
TRAPPC9	83696	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	140898164	140898164	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAPPC9	NM_031466	exon21	c.A3308C	p.Q1103P	ACGAGCTGGTTCA	.	208.0	101.0	257.0	1.0	.	228
TRAT1	50852	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	108572586	108572586	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRAT1	NM_016388	exon6	c.T423G	p.H141Q	ACTACATGCAATA	.	328.0	165.0	384.0	0.0	.	227
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	73012775	73012775	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRHDE	NM_013381	exon13	c.T2291C	p.L764P	ATCCTCTAGATAA	.	254.0	120.0	295.0	0.0	.	93
TRIM38	10475	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	25983702	25983702	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM38	NM_006355	exon8	c.A1185T	p.A395A	TGTAGCACTTACT	.	85.0	32.0	96.0	0.0	.	226
TRIM41	90933	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180661725	180661725	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM41	NM_033549	exon6	c.C1843A	p.P615T	GTCTTTCCTTTCT	.	50.0	15.0	75.0	0.0	.	226
TRIM43	129868	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	96260836	96260836	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM43	NM_138800	exon3	c.G450T	p.K150N	GAAAAAGATTCAA	.	290.0	112.0	287.0	2.0	.	63
TRIM59	286827	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	3	160156798	160156798	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIM59	NM_173084	exon3	c.T174C	p.N58N	TCTGCAATTAGGG	.	120.0	46.0	132.0	0.0	.	658
TRIP13	9319	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	5	901481	901481	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRIP13	NM_004237	exon5	c.T470G	p.L157X	CAACTTTACTGTT	.	77.0	33.0	129.0	0.0	.	90
TRO	7216	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	54955840	54955840	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRO	NM_001039705	exon12	c.A2683T	p.T895S	CTCAGCACCAGTG	.	43.0	43.0	55.0	0.0	.	131
TROVE2	6738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	193045014	193045014	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TROVE2	NM_004600	exon3	c.A645G	p.E215E	TAAAGAAAAAGCA	.	330.0	104.0	161.0	0.0	.	115
TRPA1	8989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	8	72983964	72983964	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPA1	NM_007332	exon2	c.A250T	p.R84X	AATCTCTGGTGAT	.	69.0	27.0	73.0	0.0	.	230
TRPM4	54795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	49703938	49703938	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPM4	NM_017636	exon19	c.G2849T	p.G950V	CGGAGGGGCTCCT	.	41.0	17.0	45.0	0.0	.	91
TRPM6	140803	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	77418778	77418778	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPM6	NM_017662	exon15	c.A1663G	p.R555G	CATTTCTATTTCC	.	95.0	31.0	71.0	0.0	.	335
TRPV2	51393	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16332223	16332223	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPV2	NM_016113	exon10	c.T1514A	p.L505Q	TGGTGCTGGGCTG	.	28.0	24.0	47.0	0.0	.	91
TRPV5	56302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	142612494	142612494	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TRPV5	NM_019841	exon10	c.G1269T	p.G423G	GAATGGCCCCCCA	.	188.0	83.0	264.0	0.0	.	177
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	135779040	135779040	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TSC1	NM_000368	exon17	c.A2206G	p.M736V	TCACCATGGCAGC	.	46.0	38.0	78.0	0.0	.	1906
TSNARE1	203062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	143425368	143425368	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TSNARE1	NM_145003	exon4	c.A704C	p.Q235P	AGGGCCTGGCAAG	.	71.0	26.0	79.0	0.0	.	90
TTC23L	153657	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	34880306	34880306	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC23L	NM_144725	exon9	c.A970G	p.I324V	TATTTCATAAGAA	.	198.0	94.0	186.0	0.0	.	22
TTC27	55622	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	32891805	32891805	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC27	NM_017735	exon7	c.A909T	p.P303P	CACTCCAGCACCC	.	54.0	28.0	107.0	0.0	.	90
TTC29	83894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	147860987	147860987	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC29	NM_031956	exon3	c.A61T	p.K21X	GCAGCTTCTGTCT	.	84.0	44.0	105.0	0.0	.	90
TTC30B	150737	broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	178415920	178415920	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_152517	exon1	c.T1572G	p.I524M	CTTTTCAATCTTC	.	218.0	72.0	247.0	1.0	.	.
TTC3	7267	broad.mit.edu;bcgsc.ca	37	21	38555158	38555158	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC3	NM_001001894	exon36	c.A4700T	p.Q1567L	AAATCCAAGAAAG	.	343.0	15.0	423.0	2.0	.	590
TTC40	54777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134712524	134712524	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001200049	exon24	c.A3158T	p.K1053M	TTGGCCTTCTTCC	.	74.0	36.0	137.0	0.0	.	.
TTC40	54777	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	134659626	134659626	+	Missense_Mutation	SNP	A	A	T	rs10870341	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001200049	exon44	c.T6373A	p.C2125S	CTTGGCACCGGAG	.	25.0	10.0	33.0	0.0	A|0.840;G|0.160	.
TTC9B	148014	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	40724111	40724111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTC9B	NM_152479	exon1	c.A178T	p.S60C	GGCTGCTGTCGAG	.	30.0	17.0	22.0	0.0	.	90
TTF2	8458	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	117618107	117618107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTF2	NM_003594	exon5	c.A901T	p.I301L	CCTAGCATACAGG	.	162.0	80.0	157.0	0.0	.	91
TTLL12	23170	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43570530	43570530	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL12	NM_015140	exon7	c.A1009T	p.N337Y	AGAAGTTGAAGAG	.	24.0	12.0	34.0	0.0	.	90
TTLL1	25809	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	43459928	43459928	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL1	NM_012263	exon8	c.639-1G>T	.	TTGTACCTAGGAG	.	80.0	35.0	100.0	0.0	.	92
TTLL4	9654	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	219609870	219609870	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTLL4	NM_014640	exon6	c.A1700T	p.H567L	CCAATCATGAGAA	.	116.0	43.0	152.0	0.0	.	93
TTN	7273	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179596251	179596251	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon59	c.G17242T	p.A5748S	GGAAGGCAGCTGT	.	66.0	28.0	77.0	1.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	2	179590678	179590678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon70	c.G20371A	p.E6791K	CCACCTCAAACGG	.	125.0	56.0	167.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179398439	179398439	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon358	c.T102903A	p.G34301G	ATTGTCACCTGGT	.	64.0	33.0	76.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179401059	179401059	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon357	c.T100415A	p.L33472Q	CCACCTAGATTTT	.	71.0	45.0	97.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179477140	179477140	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon266	c.T50112A	p.T16704T	CTTGACAGTGGTA	.	69.0	37.0	84.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179482943	179482943	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon252	c.A47242T	p.N15748Y	CAGGATTGTCAGT	.	81.0	37.0	87.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179584711	179584711	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon81	c.A23658T	p.L7886L	CTAACCTAGTACA	.	65.0	25.0	87.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179594257	179594257	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon64	c.A18626T	p.E6209V	ACTACCTCCACAG	.	69.0	30.0	57.0	0.0	.	636
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	179644181	179644181	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTN	NM_001267550	exon23	c.T3738A	p.H1246Q	AGAAATATGGAAT	.	96.0	39.0	133.0	0.0	.	636
TTYH1	57348	bcgsc.ca;mdanderson.org	37	19	54930431	54930431	+	Missense_Mutation	SNP	G	G	T	rs3745433	alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TTYH1	NM_020659	exon2	c.G256T	p.G86W	TCGCCCGGGGGAG	.	14.0	4.0	23.0	0.0	T|0.000;C|0.999	90
TUB	7275	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	11	8111646	8111646	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUB	NM_003320	exon4	c.A286T	p.K96X	AAGAAGAAGCGCC	.	82.0	28.0	175.0	0.0	.	91
TUBA1C	84790	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	12	49666554	49666554	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUBA1C	NM_032704	exon4	c.A894T	p.P298P	TGAGCCAGCCAAC	.	190.0	105.0	233.0	0.0	.	90
TUBB6	84617	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	12325366	12325366	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUBB6	NM_032525	exon4	c.T578A	p.V193E	AGCTGGTGGAGAA	.	45.0	36.0	111.0	0.0	.	90
TUSC3	7991	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	15480679	15480679	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TUSC3	NM_178234	exon2	c.A229T	p.I77L	AAATTTATAAAGG	.	54.0	44.0	102.0	1.0	.	516
TYW3	127253	bcgsc.ca;mdanderson.org	37	1	75229761	75229761	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_1	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	TYW3	NM_138467	exon6	c.A744G	p.L248L	TGATCTAGGAATC	.	126.0	52.0	121.0	2.0	.	70
UACA	55075	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	70959793	70959793	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UACA	NM_018003	exon16	c.A3230G	p.Q1077R	TATTTCTGTGACA	.	51.0	26.0	78.0	1.0	.	94
UBA1	7317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	47074244	47074244	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBA1	NM_153280	exon26	c.G3093A	p.V1031V	CCACGTGCGGGCG	.	25.0	24.0	34.0	0.0	.	227
UBA6	55236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	68506897	68506897	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBA6	NM_018227	exon18	c.A1526G	p.Q509R	AGGAACTGTCTAT	.	85.0	46.0	96.0	0.0	.	90
UBAP2	55833	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	33953474	33953474	+	Splice_Site	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBAP2	NM_018449	exon13	c.867-2A>G	.	CAATGCTAAGCAG	.	91.0	46.0	104.0	0.0	.	94
UBAP2L	9898	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	154223688	154223688	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBAP2L	NM_001127320	exon13	c.C1385T	p.S462L	CCACATCGGCTCC	.	270.0	16.0	143.0	1.0	.	91
UBE2N	7334	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	93804888	93804888	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2N	NM_003348	exon2	c.C218T	p.T73I	ATTTTGGTCATGA	.	186.0	84.0	195.0	0.0	.	659
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76152229	76152229	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2Q2	NM_173469	exon3	c.A293T	p.Q98L	GTCAGCAATTGAA	.	75.0	38.0	100.0	0.0	.	70
UBE2Q2	92912	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	76183352	76183352	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE2Q2	NM_173469	exon11	c.T1026C	p.N342N	AGCAAATAAGGTA	.	82.0	32.0	105.0	0.0	.	70
UBE4B	10277	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	10221232	10221232	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBE4B	NM_001105562	exon23	c.T3086C	p.M1029T	TAAACATGTTGAT	.	123.0	50.0	120.0	0.0	.	229
UBR2	23304	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	42562032	42562032	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBR2	NM_001184801	exon4	c.A521G	p.E174G	AAATTGAGGAAGA	.	96.0	31.0	92.0	0.0	.	94
UBR3	130507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	170806488	170806488	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UBR3	NM_172070	exon23	c.T3458C	p.I1153T	GCATCATTGAAGA	.	134.0	58.0	163.0	0.0	.	68
UCHL5	51377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	192993077	192993077	+	Splice_Site	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UCHL5	NM_015984	exon9	c.630-1G>T	.	CTGTACCTAGAAG	.	132.0	45.0	52.0	0.0	.	619
UGT1A10	54575	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234545950	234545950	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UGT1A10	NM_019075	exon1	c.A782G	p.Y261C	TGGACTATCCCAA	.	82.0	34.0	89.0	0.0	.	27
UNC45B	146862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	33495163	33495163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC45B	NM_001267052	exon10	c.T1235A	p.L412Q	TTGACCTGGGCAA	.	101.0	44.0	114.0	0.0	.	157
UNC5D	137970	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	35631946	35631946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC5D	NM_080872	exon16	c.G2608T	p.A870S	CCCAATGCCAAAG	.	58.0	47.0	103.0	0.0	.	96
UNC80	285175	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	210843330	210843330	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UNC80	NM_032504	exon58	c.C8818A	p.R2940S	ATGTCCCGCTCTA	.	111.0	52.0	155.0	0.0	.	90
URB2	9816	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	229773082	229773082	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	URB2	NM_014777	exon4	c.A2722T	p.S908C	CTGGACAGCCTCT	.	33.0	31.0	59.0	0.0	.	174
UROC1	131669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	126219694	126219694	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	UROC1	NM_001165974	exon12	c.A1169G	p.D390G	GTCGTGTCCAATT	.	57.0	22.0	72.0	0.0	.	91
USH2A	7399	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	216373134	216373134	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USH2A	NM_007123	exon17	c.T3646A	p.Y1216N	AATCGTACTTGGC	.	83.0	67.0	147.0	1.0	.	115
USP17L1P	401447	hgsc.bcm.edu;mdanderson.org	37	8	7190945	7190945	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001256873	exon1	c.G1037C	p.W346S	TCCAGTGGTATAA	.	86.0	71.0	88.0	0.0	.	.
USP22	23326	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	20919135	20919135	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP22	NM_015276	exon6	c.A768T	p.A256A	GTAGCCTGCTAGG	.	41.0	16.0	46.0	0.0	.	636
USP25	29761	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	17196476	17196476	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP25	NM_013396	exon11	c.A1199G	p.Y400C	TTTTATATTTGGA	.	28.0	15.0	28.0	0.0	.	663
USP31	57478	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	16	23080584	23080584	+	Missense_Mutation	SNP	C	C	A	rs34435034	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP31	NM_020718	exon16	c.G2842T	p.V948L	TGAACACGCCTTC	.	52.0	23.0	79.0	0.0	C|0.999;T|0.001	663
USP32	84669	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	58260585	58260585	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP32	NM_032582	exon31	c.A4064T	p.D1355V	AGCACGTCCTCTT	.	130.0	70.0	137.0	0.0	.	704
USP38	84640	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	4	144133531	144133531	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP38	NM_032557	exon8	c.A1558T	p.R520X	ACTCCCAGATCAC	.	73.0	34.0	65.0	0.0	.	660
USP42	84132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	6183734	6183734	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP42	NM_032172	exon9	c.A897T	p.P299P	GGTTCCAGCTTCA	.	64.0	25.0	73.0	0.0	.	659
USP5	8078	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6974028	6974028	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	USP5	NM_001098536	exon18	c.A2387T	p.D796V	TCCGGGATGGTCC	.	30.0	9.0	32.0	0.0	.	659
VARS2	57176	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	30892148	30892148	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	VARS2,NS,carcinoma,+2	VARS2	NM_001167734	exon26	c.G2574C	p.V858V	GCCCGTGCTGTGG	.	81.0	36.0	87.0	0.0	.	26
VCAM1	7412	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	101186271	101186271	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VCAM1	NM_001078	exon2	c.A304T	p.R102W	GAATCTAGGAAAT	.	111.0	52.0	112.0	0.0	.	90
VEGFC	7424	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177608644	177608644	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VEGFC	NM_005429	exon6	c.G842A	p.G281E	TTTGGTCCACAGA	.	45.0	17.0	39.0	0.0	.	710
VIPR2	7434	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	158823467	158823467	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIPR2	NM_003382	exon13	c.T1157A	p.L386Q	CGCTTCAGCTCGC	.	31.0	10.0	57.0	1.0	.	91
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	36982076	36982076	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIT	NM_001177969	exon5	c.T288A	p.D96E	GCTTGATAATTCA	.	99.0	39.0	97.0	0.0	.	92
VIT	5212	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	37035640	37035640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VIT	NM_053276	exon15	c.A1415G	p.Y472C	GCTTCTACTCGCT	.	105.0	43.0	157.0	0.0	.	92
VPS13C	54832	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	62223325	62223325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VPS13C	NM_020821	exon50	c.A6002C	p.D2001A	AGATCATCAAGGG	.	91.0	41.0	96.0	0.0	.	92
VPS13D	55187	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	12567012	12567012	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VPS13D	NM_015378	exon69	c.A12900G	p.L4300L	TTTCCTAGAAGTC	.	105.0	37.0	130.0	0.0	.	95
VWA3B	200403	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	98866838	98866838	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWA3B	NM_144992	exon20	c.C2731G	p.Q911E	AACCCCCAAGGAG	.	82.0	40.0	127.0	0.0	.	139
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6140731	6140731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWF	NM_000552	exon21	c.G2699A	p.S900N	GGGTTACTGCCGC	.	78.0	43.0	84.0	0.0	.	163
VWF	7450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	6143964	6143964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	VWF	NM_000552	exon20	c.A2575G	p.T859A	GGTCTGTGCAGTT	.	79.0	40.0	116.0	0.0	.	163
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	70885934	70885934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR17	NM_022479	exon5	c.C805T	p.R269C	CGGAAGCGTGTGA	.	98.0	54.0	97.0	0.0	.	96
WBSCR17	64409	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	71036347	71036347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR17	NM_022479	exon6	c.T1040G	p.M347R	CTGGCATGGATGT	.	81.0	41.0	99.0	0.0	.	96
WBSCR27	155368	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	73254767	73254767	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WBSCR27	NM_152559	exon4	c.A365T	p.Q122L	GGCTCCTGGCCCA	.	83.0	37.0	111.0	0.0	.	90
WDFY4	57705	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50154931	50154931	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDFY4	NM_020945	exon51	c.T7894A	p.Y2632N	CACTACTACACCC	.	94.0	42.0	113.0	1.0	.	22
WDFY4	57705	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	50174650	50174650	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDFY4	NM_020945	exon55	c.T8516A	p.L2839Q	TGAGCCTGCCTGG	.	62.0	18.0	95.0	0.0	.	22
WDR17	116966	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	177098697	177098697	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR17	NM_170710	exon30	c.A3741G	p.L1247L	GAGACTAAAAGAA	.	96.0	50.0	120.0	0.0	.	95
WDR36	134430	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	110430616	110430616	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR36	NM_139281	exon2	c.331-2A>T	.	TTAAACAGGTTCA	.	50.0	28.0	77.0	0.0	.	92
WDR47	22911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	109553760	109553760	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR47	NM_001142550	exon5	c.A929G	p.Q310R	GCTGATTGAGGTC	.	77.0	29.0	101.0	0.0	.	91
WDR52	55779	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	113092276	113092276	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR52	NM_001164496	exon18	c.T2426C	p.I809T	GTTTGGATGGGAT	.	90.0	37.0	79.0	0.0	.	90
WDR76	79968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	44158449	44158449	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR76	NM_024908	exon13	c.A1740C	p.T580T	TGAGACAGGAAAG	.	141.0	57.0	126.0	0.0	.	90
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38383818	38383818	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_031951	exon4	c.T2408A	p.L803Q	CACTGTAGGTATA	.	61.0	23.0	66.0	0.0	.	.
WDR87	83889	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38384319	38384319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_031951	exon4	c.T1907C	p.L636S	AATTTTAAACAGG	.	53.0	18.0	50.0	0.0	.	.
WDR93	56964	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	90246187	90246187	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WDR93	NM_020212	exon3	c.A310C	p.K104Q	CTCAACAAAATGC	.	85.0	41.0	101.0	0.0	.	24
WIPF3	644150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	29915478	29915478	+	Silent	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WIPF3	NM_001080529	exon3	c.A123C	p.A41A	AAGGGCAGATCCG	.	168.0	69.0	251.0	0.0	.	69
WNK2	65268	broad.mit.edu;bcgsc.ca;mdanderson.org	37	9	96021605	96021605	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WNK2	NM_006648	exon11	c.T2775A	p.P925P	CGTCCCTCCTTCC	.	117.0	51.0	135.0	1.0	.	765
WNK2	65268	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	96051121	96051121	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	WNK2	NM_006648	exon19	c.T4085A	p.L1362Q	GCTTTCTAGCCAG	.	161.0	58.0	199.0	0.0	.	765
XKR7	343702	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	30585087	30585087	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XKR7	NM_001011718	exon3	c.A1567T	p.I523F	CCTGTCATCCGGA	.	29.0	16.0	29.0	0.0	.	137
XRCC4	7518	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	82491711	82491711	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRCC4	NM_003401	exon4	c.A438T	p.K146N	GCAGAAAGAAAAT	.	45.0	29.0	50.0	0.0	.	229
XRN1	54464	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	142122605	142122605	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRN1	NM_001042604	exon18	c.A2014G	p.K672E	TTTTCTTCAAAAA	.	309.0	120.0	309.0	0.0	.	93
XRN2	22803	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	21369946	21369946	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XRN2	NM_012255	exon30	c.A2823T	p.P941P	TTTGCCACCACCC	.	84.0	40.0	90.0	1.0	.	515
XYLT1	64131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	17353092	17353092	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	XYLT1	NM_022166	exon3	c.A666G	p.R222R	TGCGGCTCTGTCC	.	86.0	40.0	87.0	0.0	.	94
YEATS4	8089	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	69759665	69759665	+	Splice_Site	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	YEATS4	NM_006530	exon4	c.333+1G>T	.	AGACCTGTGAGTA	.	263.0	99.0	257.0	0.0	.	226
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100349862	100349862	+	RNA	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZAN	.	.	.	.	CCCACCATCTCCC	.	98.0	48.0	106.0	1.0	.	142
ZAN	7455	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	100365533	100365533	+	RNA	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZAN	.	.	.	.	TCGTCCTCCTCTA	.	109.0	48.0	129.0	0.0	.	142
ZBTB2	57621	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	151687080	151687080	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZBTB2	NM_020861	exon3	c.A1121C	p.Q374P	CTTTTCTGGATAA	.	125.0	61.0	142.0	0.0	.	91
ZBTB49	166793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	4304686	4304686	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZBTB49	NM_145291	exon3	c.A1123G	p.R375G	ACGGAGAGGCCTG	.	138.0	45.0	186.0	0.0	.	92
ZC3H14	79882	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	89044335	89044335	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZC3H14	NM_001160104	exon9	c.A1130C	p.Q377P	TTCCACAGAAACA	.	255.0	96.0	331.0	0.0	.	93
ZC3HAV1	56829	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	138749665	138749665	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZC3HAV1	NM_024625	exon8	c.A1953G	p.P651P	CTGAAATGGCACA	.	72.0	36.0	58.0	0.0	.	91
ZCCHC16	340595	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	111698806	111698806	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZCCHC16	NM_001004308	exon3	c.A850G	p.S284G	TACTGCAGCCAAT	.	151.0	131.0	178.0	2.0	.	91
ZDHHC18	84243	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27177682	27177682	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZDHHC18	NM_032283	exon6	c.A896T	p.H299L	GGTTTCACACGTA	.	95.0	38.0	111.0	0.0	.	90
ZFAND4	93550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	46135397	46135397	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001128324	exon6	c.A584G	p.Y195C	GAATTATACATAG	.	51.0	17.0	54.0	0.0	.	.
ZFP112	7771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44832441	44832441	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP112	NM_001083335	exon5	c.A1887T	p.R629S	GTGGACTCTCTGA	.	113.0	49.0	146.0	0.0	.	95
ZFP112	7771	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44833042	44833042	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP112	NM_001083335	exon5	c.A1286C	p.N429T	TCAAGATTTGAAC	.	82.0	26.0	76.0	0.0	.	95
ZFP2	80108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	178359135	178359135	+	Missense_Mutation	SNP	A	A	G	rs147320919	byfrequency;alternate_allele	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP2	NM_030613	exon5	c.A821G	p.Q274R	GTAGTCAATGTGG	.	55.0	33.0	90.0	0.0	A|1.000;C|0.000	93
ZFP62	643836	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	180278100	180278100	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001172638	exon2	c.A395T	p.Q132L	GTTTTCTGCTGTA	.	40.0	11.0	71.0	0.0	.	.
ZFP64	55734	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	50701565	50701565	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFP64	NM_199427	exon9	c.A1469C	p.Q490P	TCGGCCTGGTGCA	.	29.0	12.0	40.0	0.0	.	155
ZFPM2	23414	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	106814726	106814726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFPM2	NM_012082	exon8	c.A2416G	p.N806D	ACGATCAACAAGT	.	139.0	72.0	154.0	1.0	.	139
ZFR2	23217	broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	3831767	3831767	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFR2	NM_015174	exon4	c.C489G	p.S163S	TCCCGAGGACAAG	.	18.0	6.0	42.0	0.0	.	70
ZFR2	23217	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	3811305	3811305	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZFR2	NM_015174	exon15	c.T2302A	p.S768T	CCAGGGACTCGAG	.	33.0	13.0	44.0	0.0	.	70
ZNF202	7753	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	123599835	123599835	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF202	NM_003455	exon6	c.A701G	p.Q234R	CACACCTGTGACA	.	33.0	9.0	29.0	0.0	.	91
ZNF208	7757	broad.mit.edu;ucsc.edu;mdanderson.org	37	19	22155602	22155602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF208	NM_007153	exon4	c.G2234A	p.G745E	TTCTCTCCAGTAT	.	15.0	8.0	19.0	0.0	.	7
ZNF221	7638	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44470227	44470227	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF221	NM_013359	exon6	c.A573T	p.S191S	ACAATCACACTCA	.	55.0	23.0	86.0	0.0	.	91
ZNF224	7767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44610721	44610721	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF224	NM_013398	exon6	c.A408T	p.A136A	TGAGGCAGGACTA	.	77.0	38.0	71.0	0.0	.	92
ZNF230	7773	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44515114	44515114	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF230	NM_006300	exon5	c.A923G	p.Y308C	AACTGTACAAATC	.	55.0	24.0	86.0	0.0	.	90
ZNF287	57336	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	16455335	16455335	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF287	NM_020653	exon6	c.T2121A	p.N707K	ACATTCATTACAT	.	217.0	76.0	101.0	0.0	.	90
ZNF333	84449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	14828536	14828536	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF333	NM_032433	exon11	c.T891C	p.D297D	CATTGATGTGAAA	.	60.0	30.0	73.0	0.0	.	92
ZNF33B	7582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	43089253	43089253	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF33B	NM_006955	exon5	c.A1145T	p.E382V	GGTTTCTCCCCTG	.	62.0	36.0	86.0	0.0	.	90
ZNF347	84671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53644359	53644359	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF347	NM_001172675	exon5	c.T1725C	p.C575C	CTTGCCACACTCA	.	37.0	17.0	66.0	0.0	.	90
ZNF358	140467	ucsc.edu;mdanderson.org	37	19	7585107	7585107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF358	NM_018083	exon2	c.G979A	p.A327T	GGCAAAGCCTTCG	.	20.0	7.0	11.0	0.0	.	90
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	64415185	64415185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF365	NM_199452	exon4	c.C185T	p.T62I	ATCTCACCTTCCA	.	133.0	63.0	140.0	0.0	.	92
ZNF365	22891	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	64425949	64425949	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF365	NM_199451	exon7	c.A1281C	p.Q427H	ACTCCAAAATTGT	.	45.0	13.0	65.0	0.0	.	92
ZNF385B	151126	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	180311266	180311266	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF385B	NM_152520	exon7	c.A902T	p.E301V	TGTGCCTCTAGCT	.	67.0	23.0	81.0	0.0	.	23
ZNF394	84124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	99097607	99097607	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF394	NM_032164	exon1	c.T110C	p.L37S	ACGGGCAAAAGTC	.	33.0	15.0	25.0	0.0	.	90
ZNF395	55893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	28206270	28206270	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF395	NM_018660	exon10	c.G1508A	p.R503Q	TTCCACCGGCAGG	.	24.0	24.0	91.0	0.0	.	90
ZNF423	23090	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	49764842	49764842	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF423	NM_015069	exon3	c.C117T	p.S39S	CGCACGGCTGGTT	.	45.0	38.0	101.0	0.0	.	228
ZNF429	353088	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21719234	21719234	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF429	NM_001001415	exon4	c.A379G	p.K127E	CTATACAAAGGAG	.	113.0	45.0	138.0	0.0	.	516
ZNF430	80264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21239855	21239855	+	Silent	SNP	C	C	T	rs148853343		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	ZNF430,abdomen,malignant_melanoma,0	ZNF430	NM_025189	exon5	c.C741T	p.T247T	CTCAACCCTTACT	.	182.0	81.0	221.0	0.0	.	516
ZNF431	170959	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	21365902	21365902	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF431	NM_133473	exon5	c.G796T	p.G266C	GAATGTGGCAAAG	.	78.0	39.0	67.0	0.0	.	514
ZNF451	26036	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	6	56993604	56993604	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF451	NM_001031623	exon5	c.A390T	p.A130A	AGCAGCAAGACTG	.	107.0	32.0	82.0	0.0	.	93
ZNF460	10794	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57803168	57803168	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF460	NM_006635	exon3	c.A1259G	p.Y420C	AGCCCTATGAGTG	.	54.0	51.0	91.0	0.0	.	90
ZNF471	57573	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57036782	57036782	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF471	NM_020813	exon5	c.A1346C	p.H449P	CTCAGCATCAAAG	.	38.0	31.0	91.0	0.0	.	154
ZNF484	83744	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	95618117	95618117	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF484	NM_001261458	exon3	c.G217C	p.E73Q	GGATCTCACCATC	.	84.0	38.0	98.0	1.0	.	90
ZNF488	118738	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	48370707	48370707	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF488	NM_153034	exon2	c.G175C	p.E59Q	GGCCCTGAGGCTG	.	24.0	7.0	35.0	0.0	.	91
ZNF507	22847	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	32843894	32843894	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF507	NM_001136156	exon3	c.A158G	p.K53R	TAAGCAAGATAGT	.	78.0	36.0	74.0	0.0	.	230
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22669533	22669533	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon7	c.G3802T	p.A1268S	TGTTTGCTTGAAC	.	102.0	40.0	110.0	0.0	.	275
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22806527	22806527	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon4	c.T1355A	p.L452Q	TCATTTAGGTTAT	.	69.0	41.0	91.0	0.0	.	275
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	22807425	22807425	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF521	NM_015461	exon4	c.A457T	p.R153W	ACAGCCTACTGCA	.	119.0	62.0	143.0	0.0	.	275
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	30935770	30935770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF536	NM_014717	exon2	c.T1301G	p.L434R	CCTGCCTGCAGAG	.	62.0	21.0	69.0	0.0	.	144
ZNF549	256051	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58048776	58048776	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF549	NM_001199295	exon4	c.T404G	p.V135G	CGTCTGTGGCCAG	.	93.0	68.0	159.0	0.0	.	91
ZNF585A	199704	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37644045	37644045	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF585A	NM_199126	exon6	c.A591C	p.T197T	CTTTTGTGTGAAT	.	72.0	37.0	71.0	0.0	.	92
ZNF598	90850	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2048704	2048704	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF598	NM_178167	exon13	c.A2360T	p.Q787L	CTGACCTGTCTGA	.	64.0	27.0	73.0	0.0	.	432
ZNF608	57507	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	123983650	123983650	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF608	NM_020747	exon4	c.A2427G	p.K809K	TTTGTCTTTGAGT	.	127.0	36.0	169.0	0.0	.	229
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91403139	91403139	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon4	c.A3591T	p.T1197T	TCTTGCTGTCTGA	.	71.0	27.0	109.0	0.0	.	155
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91405810	91405810	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon3	c.A1101T	p.P367P	CTTATCTGGGTTA	.	90.0	32.0	86.0	0.0	.	155
ZNF644	84146	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	91406111	91406111	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF644	NM_201269	exon3	c.A800T	p.Q267L	AGAAATTGAATGA	.	79.0	42.0	91.0	0.0	.	155
ZNF662	389114	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42956611	42956611	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF662	NM_001134656	exon4	c.A1124T	p.Q375L	TTTCTCAGCACCA	.	109.0	47.0	106.0	0.0	.	90
ZNF669	79862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	247264199	247264199	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF669	NM_024804	exon4	c.G872T	p.G291V	CAAGAACCGGAAA	.	27.0	20.0	72.0	0.0	.	90
ZNF677	342926	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	53741010	53741010	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF677	NM_182609	exon5	c.T970G	p.C324G	TGCCACATATATT	.	72.0	40.0	99.0	0.0	.	91
ZNF681	148213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	23926975	23926975	+	Silent	SNP	A	A	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_138286	exon4	c.T1377C	p.F459F	CTGGTTAAAGGCT	.	21.0	8.0	38.0	0.0	.	.
ZNF71	58491	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	57132817	57132817	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF71	NM_021216	exon3	c.A162T	p.A54A	AGGTGCAGAGTGG	.	42.0	37.0	125.0	0.0	.	91
ZNF721	170960	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	436177	436177	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF721	NM_133474	exon3	c.G2079G	p.K693K	TTTTTCTCCAGTA	.	93.0	31.0	119.0	0.0	.	47
ZNF727	442319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	63529267	63529267	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001159522	exon2	c.4-2A>T	.	TTTTTCAGCGAGT	.	49.0	23.0	59.0	0.0	.	.
ZNF727	442319	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	63538686	63538686	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001159522	exon4	c.A1259T	p.E420V	ATATGGAAGTGAG	.	130.0	66.0	132.0	0.0	.	.
ZNF735	730291	ucsc.edu;mdanderson.org	37	7	63680540	63680540	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	NM_001159524	exon4	c.C1111A	p.H371N	AAGGCACATAAGA	.	35.0	18.0	25.0	1.0	.	.
ZNF804B	219578	broad.mit.edu;bcgsc.ca;mdanderson.org	37	7	88965401	88965401	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF804B	NM_181646	exon4	c.A3105T	p.T1035T	AGTAACAGAGTCT	.	116.0	60.0	139.0	1.0	.	101
ZNF93	81931	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	20026109	20026109	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNF93	NM_031218	exon2	c.T24C	p.D8D	TAGAGATGTGGCC	.	40.0	22.0	35.0	0.0	.	91
ZNFX1	57169	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	47879931	47879931	+	Missense_Mutation	SNP	C	C	A	rs139038003	byfrequency	TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNFX1	NM_021035	exon6	c.G2241T	p.Q747H	CAGGTACTGTTCC	.	64.0	25.0	89.0	0.0	C|1.000;A|0.000	24
ZNRF4	148066	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	19	5456001	5456001	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZNRF4	NM_181710	exon1	c.A499T	p.T167S	GACTGCACCTTCG	.	13.0	9.0	14.0	0.0	.	135
ZP2	7783	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	21215496	21215496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZP2	NM_003460	exon9	c.C827T	p.T276I	GGTATGGTGAGAG	.	42.0	18.0	78.0	0.0	.	91
ZSCAN18	65982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58598367	58598367	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZSCAN18	NM_001145542	exon5	c.G819C	p.K273N	AAAGGACTTCAGC	.	17.0	16.0	27.0	0.0	.	90
ZSCAN18	65982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	58601546	58601546	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZSCAN18	NM_001145542	exon2	c.A257T	p.Q86L	TCCTGCTGGACTC	.	81.0	62.0	215.0	1.0	.	90
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	116973312	116973312	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	ZUFSP	NM_145062	exon6	c.A1005T	p.T335T	CACATCTGTGGCA	.	75.0	23.0	97.0	0.0	.	69
SIX4	51804	broad.mit.edu;bcgsc.ca	37	14	61190041	61190042	+	Missense_Mutation	DNP	GC	GC	TA	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	GC	GC	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.A251Y	TTCTCGGCGGGCG	.	30.0	9.0	35.0	0.0	.	.
KIAA1683	80726	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	18377981	18377982	+	Missense_Mutation	DNP	CA	CA	AG	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.L123P	GGAAATCAGCTTC	.	74.0	33.0	77.0	0.0	.	.
DENND2A	27147	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	140301960	140301961	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CC	CC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.V80L	TCTCCACCGTAGA	.	159.0	66.0	207.0	0.0	.	.
ZFPM2	23414	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	106813460	106813461	+	Missense_Mutation	DNP	CT	CT	AC	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CT	CT	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.L384T	CAGGAGCTCCATG	.	106.0	48.0	137.0	0.0	.	.
RXRA	6256	broad.mit.edu;bcgsc.ca	37	9	137293489	137293490	+	Missense_Mutation	DNP	CA	CA	AT	novel		TCGA-UB-A7MB-01A-11D-A33Q-10	TCGA-UB-A7MB-10A-01D-A33Q-10	CA	CA	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina GAIIx	c7af114d-6f4d-4bf8-978c-4eebf696b12e	2cff442a-ea76-4fbd-9c30-57cc414c49bd	.	.	.	.	.	p.Q14M	TCCACCCAGGTGA	.	47.0	37.0	93.0	1.0	.	.
