Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	TranscriptID	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov	TVarCov	NTotCov	NVarCov	dbSNPPopFreq	COSMIC_Gene_Freq
AASDH	132949	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57219583	57219583	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	AASDH	NM_181806	exon9	c.A1563G	p.P521P	TGTAAATGGTAGA	.	66.0	16.0	104.0	0.0	.	94
AQR	9716	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	15	35149307	35149307	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	AQR	NM_014691	exon35	c.A4144T	p.T1382S	ATAAAGTCTAATT	.	44.0	15.0	47.0	0.0	.	135
ARHGEF15	22899	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	8216406	8216417	+	In_Frame_Del	DEL	CGGTCACCCTGC	CGGTCACCCTGC	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	CGGTCACCCTGC	CGGTCACCCTGC	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARHGEF15	NM_025014	exon3	c.768_779del	p.256_260del	AAGCATCGGTCAC	.	33.0	11.0	58.0	0.0	.	230
ARID1A	8289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	27094294	27094294	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARID1A	NM_006015	exon11	c.C3002G	p.S1001C	GTTCTTCTACTAC	.	69.0	33.0	76.0	0.0	.	584
ARID3A	1820	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	968403	968403	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARID3A	NM_005224	exon8	c.1496-2A>T	.	TCCCACAGCCTCC	.	152.0	56.0	153.0	0.0	.	90
ARNT	405	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	150788840	150788840	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ARNT	NM_001668	exon19	c.A1845T	p.S615S	AGAAGCTGATGGC	.	124.0	21.0	66.0	0.0	.	1085
ART5	116969	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	11	3661593	3661593	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ART5	NM_001079536	exon3	c.T66A	p.A22A	GGGAACAGCCTGG	.	52.0	27.0	33.0	0.0	.	91
BBS12	166379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	123664496	123664496	+	Silent	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BBS12	NM_001178007	exon3	c.T1449C	p.D483D	TGTAGATAGGAAC	.	54.0	15.0	108.0	0.0	.	92
BCL11B	64919	hgsc.bcm.edu;broad.mit.edu;mdanderson.org	37	14	99641808	99641808	+	Nonsense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BCL11B	NM_138576	exon4	c.C1365G	p.Y455X	GCACTTGTAGGGC	.	44.0	5.0	47.0	0.0	.	1147
BMP5	653	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	55620351	55620351	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	BMP5	NM_021073	exon7	c.C1345T	p.R449C	ATGAGCGTACTAC	.	430.0	142.0	327.0	2.0	.	516
C1QTNF2	114898	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	159776435	159776435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C1QTNF2	NM_031908	exon3	c.G733A	p.D245N	TGATGTCGTAGGT	.	77.0	19.0	67.0	0.0	.	91
C20orf26	26074	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	20257971	20257971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	C20orf26	NM_015585	exon22	c.G2665A	p.A889T	GCGGACGCGCTAG	.	105.0	21.0	101.0	0.0	.	94
CAGE1	285782	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	7334305	7334305	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CAGE1	NM_001170692	exon12	c.A2388T	p.K796N	TAAATGTTTATTT	.	76.0	32.0	49.0	0.0	.	22
CASP8AP2	9994	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	90573432	90573432	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CASP8AP2	NM_001137667	exon7	c.G2004T	p.M668I	TACTATGCATTGT	.	89.0	30.0	93.0	0.0	.	24
CCDC80	151887	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	112357309	112357309	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CCDC80	NM_199511	exon2	c.C1444T	p.P482S	GACCTGGCACCAC	.	66.0	22.0	67.0	0.0	.	92
CENPE	1062	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	104084644	104084644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CENPE	NM_001813	exon17	c.G1714T	p.D572Y	CAAGATCTTGATT	.	327.0	77.0	319.0	0.0	.	277
CEP89	84902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	33378692	33378692	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CEP89	NM_032816	exon17	c.A1931T	p.N644I	CGAATGTTGCTTT	.	86.0	31.0	76.0	0.0	.	94
COL13A1	1305	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	71692351	71692351	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	COL13A1	NM_001130103	exon30	c.A1686T	p.P562P	CAATCCAGGAGCA	.	91.0	20.0	86.0	0.0	.	91
CSHL1	1444	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	61987890	61987890	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CSHL1	NM_022579	exon3	c.T196A	p.Y66N	TGATATAGGCTTC	.	97.0	44.0	94.0	0.0	.	90
CST5	1473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	20	23856826	23856826	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CST5	NM_001900	exon3	c.A428T	p.X143L	GACCCCTAGACTT	.	142.0	56.0	97.0	0.0	.	90
CXCR2	3579	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	218999787	218999787	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CXCR2	NM_001168298	exon4	c.T263A	p.L88Q	ACCTGCTGAACCT	.	190.0	76.0	188.0	0.0	.	658
CYP8B1	1582	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	42916188	42916188	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	CYP8B1	NM_004391	exon1	c.A1121G	p.Y374C	AACAGATACTCCT	.	144.0	16.0	127.0	0.0	.	92
DEFB119	245932	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	29978247	29978247	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DEFB119	NM_001271209	exon1	c.A40T	p.I14L	CTTCTATGGCCAG	.	190.0	50.0	126.0	1.0	.	90
DICER1	23405	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	95557445	95557445	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	DICER1	NM_030621	exon27	c.A5529T	p.E1843D	AAACTTTTCTGCA	.	124.0	27.0	103.0	0.0	.	961
EFCAB14	9813	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	47154101	47154101	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_014774	exon7	c.A911T	p.Q304L	ACTCTCTGGGTAA	.	130.0	21.0	131.0	0.0	.	.
EYS	346007	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;mdanderson.org	37	6	65707540	65707540	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	EYS	NM_001142800	exon14	c.C2194T	p.Q732X	TGTCCTGTTCACA	.	557.0	54.0	244.0	0.0	.	660
FAM169B	283777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	99023922	99023922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_182562	exon4	c.G91A	p.D31N	ACATGTCATCATC	.	137.0	24.0	116.0	0.0	.	.
FASN	2194	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	80039126	80039126	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FASN	NM_004104	exon38	c.6509delT	p.L2170fs	AGGTTGAGCTCAC	.	48.0	15.0	46.0	0.0	.	90
FASTKD2	22868	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	207655393	207655393	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FASTKD2	NM_001136193	exon11	c.G1996T	p.G666C	GCAATGGGTTTTC	.	65.0	13.0	53.0	0.0	.	118
FBXO18	84893	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	5945116	5945116	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FBXO18	NM_032807	exon3	c.G288C	p.P96P	TAAACCGAGAACA	.	114.0	37.0	76.0	0.0	.	228
FBXO7	25793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	32881139	32881139	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FBXO7	NM_012179	exon4	c.G730C	p.E244Q	CTCTGCGAGGGCA	.	151.0	25.0	112.0	0.0	.	228
FGF18	8817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	170876191	170876191	+	Silent	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FGF18	NM_003862	exon4	c.C291T	p.V97V	TCAAGTCCGGATC	.	136.0	24.0	147.0	0.0	.	522
FLG	2312	hgsc.bcm.edu;bcgsc.ca;mdanderson.org	37	1	152276112	152276112	+	Silent	SNP	C	C	T	rs201725426		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FLG	NM_002016	exon3	c.G11250A	p.A3750A	TTGGGACGCTGAG	.	238.0	26.0	143.0	0.0	C|0.999;T|0.001	106
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	152278842	152278842	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	FLG	NM_002016	exon3	c.A8520T	p.T2840T	ACGTGTTGTTCTG	.	350.0	80.0	187.0	0.0	.	106
G2E3	55632	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	31077159	31077159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	G2E3	NM_017769	exon12	c.C1384T	p.P462S	GGTGGTCCTTCAC	.	178.0	19.0	89.0	0.0	.	660
GFI1	2672	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	92946582	92946582	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GFI1	NM_005263	exon4	c.C362T	p.P121L	GAGTACGGTTTGA	.	152.0	29.0	164.0	0.0	.	514
GLE1	2733	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	131296078	131296078	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GLE1	NM_001499	exon11	c.A1494T	p.A498A	TGAAGCAGCATTC	.	120.0	49.0	131.0	0.0	.	22
GRK7	131890	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	141535712	141535712	+	Silent	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	GRK7	NM_139209	exon4	c.G1482T	p.G494G	TCGGGGGGTGGAA	.	101.0	22.0	98.0	0.0	.	522
KIAA1211	57482	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	57179476	57179476	+	Silent	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KIAA1211	NM_020722	exon7	c.C468A	p.A156A	CAGTGCCGCCAAG	.	71.0	15.0	84.0	0.0	.	70
KIAA1755	85449	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36856566	36856566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KIAA1755	NM_001029864	exon6	c.G1948A	p.A650T	GCAGGGCGCTGAC	.	27.0	4.0	32.0	0.0	.	95
KRTAP10-12	386685	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	21	46117560	46117561	+	Frame_Shift_Ins	INS	-	-	TT	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	-	-	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	KRTAP10-12	NM_198699	exon1	c.444_445insTT	p.Q148fs	GTGTCAACAGTCC	.	28.0	13.0	27.0	0.0	.	90
LMNB2	84823	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	19	2435009	2435009	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LMNB2	NM_032737	exon5	c.A845T	p.Y282F	GCCTGGTAGGTCT	.	15.0	5.0	17.0	0.0	.	290
LRRC41	10489	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	46746117	46746117	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	LRRC41	NM_006369	exon6	c.C1872T	p.A624A	AAAGGTGGCACTA	.	308.0	65.0	309.0	0.0	.	156
MAP3K12	7786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	53879187	53879187	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAP3K12	NM_001193511	exon5	c.C894A	p.S298R	CTTGGTGCTCTTG	.	97.0	38.0	74.0	0.0	.	604
MAPK6	5597	ucsc.edu;bcgsc.ca	37	15	52342222	52342222	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MAPK6	NM_002748	exon3	c.G588T	p.W196C	TAAATGGTACAGA	.	37.0	4.0	33.0	0.0	.	1403
MATN4	8785	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	43929960	43929960	+	Splice_Site	DEL	C	C	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MATN4	NM_003833	exon5	c.766+1G>-	.	TGCTCACCCCTGC	.	112.0	26.0	48.0	0.0	.	90
MED28	80306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	17625401	17625401	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MED28	NM_025205	exon4	c.G517T	p.A173S	ATCCCTGCACCTC	.	171.0	57.0	265.0	0.0	.	90
MFAP5	8076	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	8807070	8807070	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MFAP5	NM_003480	exon6	c.T180A	p.A60A	CAAAACAGCCAAA	.	197.0	63.0	168.0	0.0	.	577
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	9085994	9085994	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MUC16	NM_024690	exon1	c.A5821T	p.I1941F	CTGGAATGGATGA	.	69.0	35.0	60.0	0.0	.	566
MYH14	79784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	50789947	50789947	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	MYH14	NM_001145809	exon34	c.A4748T	p.K1583M	TCGGCAAGAGCGT	.	95.0	29.0	94.0	0.0	.	23
NAPB	63908	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	23360527	23360527	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NAPB	NM_022080	exon9	c.T712G	p.S238A	CTCTTGAATCAGT	.	447.0	108.0	350.0	0.0	.	91
NCOA7	135112	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	126196071	126196071	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NCOA7	NM_001199619	exon5	c.A308C	p.K103T	AAGAGAAGAAGAT	.	118.0	29.0	128.0	0.0	.	227
NLGN1	22871	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	3	173996849	173996849	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	NLGN1	NM_014932	exon6	c.A1058T	p.H353L	GATACCACATAGC	.	181.0	43.0	155.0	1.0	.	231
OGFR	11054	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	20	61443964	61443964	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OGFR	NM_007346	exon7	c.G997C	p.E333Q	GGGCCAGAGCATA	.	113.0	45.0	70.0	0.0	.	68
OSBPL3	26031	ucsc.edu;bcgsc.ca	37	7	24881964	24881964	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	OSBPL3	NM_015550	exon13	c.T1335A	p.T445T	GGAGTCAGTGATG	.	182.0	57.0	142.0	2.0	.	204
PABPC5	140886	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	90691012	90691012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	PABPC5,NS,carcinoma,-1	PABPC5	NM_080832	exon2	c.G436T	p.G146C	TCTAAGGGTTATG	.	110.0	75.0	76.0	0.0	.	110
PCDHB16	57717	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	140562737	140562737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PCDHB16	NM_020957	exon1	c.T603A	p.D201E	GCTGGATCGGGAG	.	80.0	25.0	78.0	0.0	.	92
PCYT2	5833	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	79865686	79865686	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PCYT2	NM_002861	exon5	c.G455T	p.R152L	AGCATGCGGCCCA	.	54.0	8.0	55.0	0.0	.	68
PDE3A	5139	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	20792858	20792858	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PDE3A	NM_000921	exon10	c.C2218A	p.H740N	TATTTTCATGCTT	.	91.0	17.0	64.0	0.0	.	94
PMFBP1	83449	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	72198720	72198720	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PMFBP1	NM_031293	exon3	c.G108T	p.Q36H	CTTCCTCTGTCTC	.	62.0	8.0	50.0	0.0	.	92
PNLIPRP3	119548	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	10	118202641	118202641	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PNLIPRP3	NM_001011709	exon3	c.A279T	p.I93I	CAACATAGCTGGA	.	88.0	15.0	90.0	0.0	.	91
PTGS1	5742	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	125141054	125141054	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	PTGS1	NM_000962	exon5	c.T353G	p.V118G	CTGCAGTGCGCTC	.	107.0	15.0	116.0	0.0	.	228
RAB3GAP1	22930	broad.mit.edu;ucsc.edu;mdanderson.org	37	2	135878431	135878431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RAB3GAP1	NM_001172435	exon8	c.C691T	p.R231X	GCTATTCGATTTA	.	139.0	26.0	107.0	1.0	.	92
RALGAPB	57148	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	37117219	37117219	+	Silent	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RALGAPB	NM_020336	exon2	c.T144G	p.P48P	TACCCCTTCAGTG	.	179.0	41.0	92.0	0.0	.	92
RIMS2	9699	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	104927768	104927768	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RIMS2	NM_001100117	exon7	c.A1858G	p.I620V	GCATTTATTACTA	.	151.0	81.0	85.0	1.0	.	279
RIOK2	55781	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	96503531	96503531	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RIOK2	NM_001159749	exon8	c.A1037G	p.E346G	TAAACCTCTGCTT	.	89.0	14.0	108.0	0.0	.	419
RMI1	80010	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	9	86616085	86616085	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RMI1	NM_024945	exon3	c.A184T	p.R62W	GATCTGAGGGATT	.	123.0	37.0	146.0	0.0	.	90
RP1	6101	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	55534080	55534080	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RP1	NM_006269	exon2	c.A554T	p.Q185L	TTCTACAGCACCT	.	198.0	107.0	140.0	1.0	.	102
RPS3	6188	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	75115172	75115172	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RPS3	NM_001260506	exon5	c.G507A	p.V169V	GTTTGTGGATGGC	.	177.0	19.0	98.0	0.0	.	90
RUFY3	22902	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	4	71656987	71656987	+	Silent	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RUFY3	NM_014961	exon13	c.A1383T	p.A461A	TGCAGCAAATAAA	.	501.0	108.0	580.0	1.0	.	90
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	38945876	38945876	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RYR1	NM_001042723	exon14	c.G1442C	p.G481A	CCTAGGGGATGCT	.	67.0	25.0	91.0	0.0	.	100
RYR2	6262	broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	1	237872824	237872824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	RYR2	NM_001035	exon70	c.T10187G	p.F3396C	AGCTCTTCCGCAT	.	159.0	68.0	79.0	1.0	.	158
SEC14L1	6397	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	75186883	75186883	+	Splice_Site	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SEC14L1	NM_001204408	exon6	c.64-2A>T	.	ATTTATAGGCCTA	.	39.0	12.0	41.0	0.0	.	92
SERPINB10	5273	hgsc.bcm.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61584734	61584734	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB10	NM_005024	exon2	c.A213C	p.E71D	CCCTGAAAGTGAA	.	304.0	107.0	238.0	0.0	.	227
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61323009	61323009	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB3	NM_006919	exon8	c.T1055A	p.F352Y	GATCCGAATCCTA	.	128.0	58.0	137.0	0.0	.	228
SERPINB3	6317	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	18	61323101	61323101	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SERPINB3	NM_006919	exon8	c.C963T	p.R321R	GAGACCGCGGCTC	.	133.0	32.0	109.0	0.0	.	228
SH3TC2	79628	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	5	148388485	148388485	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SH3TC2	NM_024577	exon15	c.A3407T	p.Q1136L	CTAATCTGCAGCT	.	153.0	61.0	131.0	0.0	.	92
SH3YL1	26751	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	234273	234273	+	Splice_Site	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SH3YL1	NM_001159597	exon6	c.292-1G>A	.	TGATACCTAAAGT	.	83.0	17.0	63.0	0.0	.	91
SIK1	150094	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	21	44837443	44837443	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SIK1	NM_173354	exon13	c.G1956T	p.E652D	CACCTCCTCCAGC	.	80.0	20.0	65.0	0.0	.	346
SKOR1	390598	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	15	68126112	68126112	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SKOR1	NM_001258024	exon15	c.A2545C	p.K849Q	TCCTGCAAGATGC	.	69.0	17.0	57.0	0.0	.	90
SLC25A19	60386	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	17	73273550	73273550	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC25A19	NM_001126122	exon6	c.C658G	p.L220V	AAAGCAGGTTTTG	.	59.0	20.0	66.0	0.0	.	91
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca;mdanderson.org	37	8	92330525	92330525	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC26A7	NM_134266	exon5	c.G559T	p.A187S	GGGGCTGCCACCC	.	176.0	22.0	74.0	0.0	.	92
SLC38A1	81539	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	12	46633498	46633498	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC38A1	NM_030674	exon3	c.A86G	p.N29S	AAATCATTGGAGT	.	108.0	20.0	96.0	0.0	.	518
SLC6A17	388662	broad.mit.edu;bcgsc.ca;mdanderson.org	37	1	110714799	110714799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	.	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SLC6A17	NM_001010898	exon3	c.T404A	p.I135K	ACTATATATGTCC	.	25.0	4.0	45.0	0.0	.	92
SMTN	6525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	22	31484509	31484509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SMTN	NM_001207018	exon3	c.C379T	p.R127W	CAGCAGCGGGAAG	.	103.0	19.0	73.0	0.0	.	154
SMYD1	150572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	88396229	88396229	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SMYD1	NM_198274	exon6	c.T814A	p.F272I	TACTACTTTGACT	.	119.0	20.0	132.0	0.0	.	229
SPTBN4	57731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	41021261	41021261	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SPTBN4	NM_020971	exon15	c.G2809A	p.V937I	GGCCGCGTTCTGG	.	105.0	20.0	64.0	0.0	.	94
SRCRB4D	136853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	7	76023205	76023205	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SRCRB4D	NM_080744	exon8	c.C963G	p.P321P	AGGCTGGGGGCCA	.	205.0	37.0	117.0	0.0	.	91
SRRM2	23524	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	16	2812757	2812757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	SRRM2	NM_016333	exon11	c.C2228T	p.S743F	GCAGGTCCAATTC	.	103.0	25.0	92.0	0.0	.	93
TCEA1	6917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	8	54882968	54882968	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TCEA1	NM_006756	exon9	c.G881A	p.C294Y	TTTCCACATTCAT	.	397.0	56.0	236.0	0.0	.	661
THEMIS	387357	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	6	128134892	128134892	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	THEMIS	NM_001010923	exon4	c.A894T	p.Q298H	AATGCTTTGGGGC	.	103.0	24.0	120.0	0.0	.	94
TMC4	147798	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	54672012	54672012	+	Silent	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TMC4	NM_001145303	exon5	c.C700T	p.L234L	ATTCCAGGTAACC	.	130.0	38.0	136.0	0.0	.	91
TPRN	286262	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	140086995	140086995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TPRN	NM_001128228	exon2	c.C1874T	p.S625L	TCCTCTGAGCCGG	.	59.0	6.0	65.0	0.0	.	90
TTI1	9675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	36642105	36642105	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	TTI1	NM_014657	exon3	c.A114T	p.Q38H	CACAGCTTGTAGT	.	188.0	55.0	109.0	0.0	.	94
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	14	94088446	94088446	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	A	A	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	NM_020818	exon30	c.A4336G	p.I1446V	CACTCTATACTCT	.	103.0	24.0	85.0	0.0	.	.
USP48	84196	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	22021689	22021689	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP48	NM_032236	exon23	c.2753delA	p.K918fs	GATATCTTTTGCC	.	56.0	16.0	50.0	0.0	.	659
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	X	41069765	41069765	+	Silent	SNP	T	T	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	T	T	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	USP9X	NM_001039591	exon33	c.T5019A	p.L1673L	TAGGCTTTGGGGT	.	178.0	55.0	108.0	0.0	.	563
VWCE	220001	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	11	61026465	61026465	+	Silent	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	VWCE	NM_152718	exon20	c.C2550G	p.T850T	TGGAGGGGTCGAA	.	50.0	18.0	49.0	0.0	.	91
WDR65	149465	hgsc.bcm.edu;bcgsc.ca	37	1	43687775	43687775	+	Splice_Site	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	WDR65	NM_001195831	exon15	c.2342-1G>A	.	TCTCCAGAATGTT	.	182.0	34.0	192.0	0.0	.	91
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	2	168103964	168103964	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	XIRP2	NM_152381	exon9	c.C6062A	p.A2021D	CAAAAGCCCCCAA	.	287.0	48.0	204.0	0.0	.	104
ZNF14	7561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	19823308	19823308	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF14	NM_021030	exon4	c.G782A	p.S261N	GGACAACTGAAAG	.	109.0	26.0	66.0	0.0	.	517
ZNF334	55713	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	20	45129982	45129982	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF334	NM_018102	exon5	c.C1996T	p.R666C	TGTGGCGAAATGT	.	221.0	20.0	116.0	0.0	.	92
ZNF383	163087	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	37734528	37734528	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF383	NM_152604	exon5	c.G1390C	p.D464H	GGCTCGGATCTCA	.	127.0	18.0	104.0	0.0	.	92
ZNF536	9745	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	31039817	31039817	+	Silent	SNP	C	C	T	rs202189721		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	C	C	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF536	NM_014717	exon4	c.C3291T	p.T1097T	ATGGACCGGCCAC	.	108.0	18.0	77.0	0.0	C|0.999;T|0.001	144
ZNF576	79177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca;mdanderson.org	37	19	44103150	44103150	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	ZNF576	NM_001145347	exon3	c.G253A	p.A85T	TCCAAAGCCCTAA	.	128.0	36.0	73.0	0.0	.	90
PRG4	10216	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	1	186276282	186276283	+	Missense_Mutation	DNP	CA	CA	TG	novel		TCGA-UB-A7ME-01A-11D-A33K-10	TCGA-UB-A7ME-10A-01D-A33K-10	CA	CA	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	346d5148-fd4f-46cc-b15c-c87013dce4fb	a6a194d9-7740-4c01-b154-677cb12daba0	.	.	.	.	.	p.T478A	ACCCACCACTCCC	.	89.0	18.0	46.0	0.0	.	.
