Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
ACAP3	116983	broad.mit.edu	37	1	1231132	1231132	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:1231132C>A	uc001aeb.2	-	18	1763	c.1689G>T	c.(1687-1689)GTG>GTT	p.V563V	ACAP3_uc001ady.2_Silent_p.V293V|ACAP3_uc001aea.2_Silent_p.V521V	NM_030649	NP_085152	Q96P50	ACAP3_HUMAN	ArfGAP with coiled-coil, ankyrin repeat and PH	563					filopodium assembly|regulation of ARF GTPase activity|signal transduction		ARF GTPase activator activity|cytoskeletal adaptor activity|SH3 domain binding|zinc ion binding				0						ACAGAGCGGCCACACAGGGCA	0.706			NA											6	20					0.00116845	0.00126673	0.001168	1	0
CA6	765	broad.mit.edu	37	1	9009428	9009428	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:9009428C>A	uc001apm.2	+	2	210	c.186C>A	c.(184-186)TCC>TCA	p.S62S	CA6_uc009vmn.2_Intron	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	62					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding			ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		ACAACCCCTCCTTGAAGGGGC	0.602			NA											9	24					5.50884e-06	6.74235e-06	0.001368	1	0
MTHFR	4524	broad.mit.edu	37	1	11855339	11855339	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:11855339C>T	uc001atc.1	-	6	1031	c.847G>A	c.(847-849)GTG>ATG	p.V283M	MTHFR_uc001atb.1_Missense_Mutation_p.V306M	NM_005957	NP_005948	P42898	MTHR_HUMAN	5,10-methylenetetrahydrofolate reductase	283					blood circulation|folic acid metabolic process	cytosol	methylenetetrahydrofolate reductase (NADPH) activity|protein binding				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00826)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)	Benazepril(DB00542)|Cyanocobalamin(DB00115)|Folic Acid(DB00158)|L-Methionine(DB00134)|Menadione(DB00170)|Methotrexate(DB00563)|Pyridoxal Phosphate(DB00114)|Pyridoxine(DB00165)|Raltitrexed(DB00293)|Riboflavin(DB00140)|S-Adenosylmethionine(DB00118)|Tetrahydrofolic acid(DB00116)	GGCTCAATCACGTCCTTGATC	0.597			NA											5	49					0	0	0.000602	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12853569	12853569	+	Missense_Mutation	SNP	C	C	A	rs138008515		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:12853569C>A	uc001auj.1	+	2	296	c.193C>A	c.(193-195)CCT>ACT	p.P65T		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	65											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACCTGCCTCCCTCTGGGATC	0.552			NA											35	193					8.69298e-16	1.42026e-15	0.006999	1	0
NBPF1	55672	broad.mit.edu	37	1	16895686	16895686	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:16895686C>G	uc009vos.1	-	23	3384	c.2496G>C	c.(2494-2496)TGG>TGC	p.W832C	NBPF1_uc009vot.1_Missense_Mutation_p.W290C|NBPF1_uc001ayz.1_Missense_Mutation_p.W290C|NBPF1_uc010oce.1_Missense_Mutation_p.W561C	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	832	NBPF 4.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		AACCTTCATCCCAGGACTCCT	0.483			NA											19	396					0	0	0.002299	0	0
KIAA0090	23065	broad.mit.edu	37	1	19571464	19571464	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:19571464C>T	uc001bbo.2	-	2	199	c.156G>A	c.(154-156)AAG>AAA	p.K52K	KIAA0090_uc001bbp.2_Silent_p.K52K|KIAA0090_uc001bbq.2_Silent_p.K52K|KIAA0090_uc001bbr.2_Silent_p.K52K	NM_015047	NP_055862	Q8N766	K0090_HUMAN	hypothetical protein LOC23065 precursor	52	Extracellular (Potential).					integral to membrane	protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|Breast(348;0.00366)|all_lung(284;0.00519)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;3.84e-05)|Kidney(64;0.000191)|KIRC - Kidney renal clear cell carcinoma(64;0.00274)|GBM - Glioblastoma multiforme(114;0.005)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0656)		CAACCAACTTCTTGGATCCAG	0.458	GBM(4;72 124 25802 30195)		NA											10	129					0	0	0.010729	0	0
EPHB2	2048	broad.mit.edu	37	1	23191473	23191473	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:23191473C>G	uc009vqj.1	+	5	1216	c.1071C>G	c.(1069-1071)GTC>GTG	p.V357V	EPHB2_uc001bge.2_Silent_p.V357V|EPHB2_uc001bgf.2_Silent_p.V357V|EPHB2_uc010odu.1_Silent_p.V357V|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	357	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		AGGACCTCGTCTACAACATCA	0.652			NA							Hereditary_Prostate_Cancer				10	99					0	0	0.010729	0	0
EPHB2	2048	broad.mit.edu	37	1	23191648	23191648	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:23191648G>T	uc009vqj.1	+	5	1391	c.1246G>T	c.(1246-1248)GAC>TAC	p.D416Y	EPHB2_uc001bge.2_Missense_Mutation_p.D416Y|EPHB2_uc001bgf.2_Missense_Mutation_p.D416Y|EPHB2_uc010odu.1_Missense_Mutation_p.D416Y|hsa-mir-4253|MI0015860_5'Flank	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	416	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CGGCGTTACTGACCAGAGCCC	0.612			NA							Hereditary_Prostate_Cancer				17	72					1.67942e-08	2.29792e-08	0.006122	1	0
YARS	8565	broad.mit.edu	37	1	33272110	33272110	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:33272110C>T	uc001bvy.1	-	4	1271	c.483G>A	c.(481-483)CTG>CTA	p.L161L		NM_003680	NP_003671	P54577	SYYC_HUMAN	tyrosyl-tRNA synthetase	161					apoptosis|tyrosyl-tRNA aminoacylation	cytosol|extracellular space|nucleus|soluble fraction	ATP binding|interleukin-8 receptor binding|signal transducer activity|tRNA binding|tyrosine-tRNA ligase activity			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)			L-Tyrosine(DB00135)	AGAGGCCACTCAGCAAAGGGT	0.483			NA											14	167					0	0	0.00245	0	0
CSMD2	114784	broad.mit.edu	37	1	34401436	34401436	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:34401436C>A	uc001bxn.1	-	4	546	c.517G>T	c.(517-519)GGC>TGC	p.G173C	CSMD2_uc001bxm.1_Missense_Mutation_p.G213C	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	173	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				ACGGCGTGGCCCTCCAGGAAG	0.632			NA											14	55					2.31682e-05	2.75172e-05	0.003163	1	0
GRIK3	2899	broad.mit.edu	37	1	37307394	37307394	+	Nonsense_Mutation	SNP	G	G	T	rs149891912	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:37307394G>T	uc001caz.2	-	10	1608	c.1473C>A	c.(1471-1473)TAC>TAA	p.Y491*	GRIK3_uc001cba.1_Nonsense_Mutation_p.Y491*	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	491	Extracellular (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	CCTGTGCCCCGTACTTGCCGT	0.597			NA											16	113					1.52009e-12	2.32694e-12	0.003163	1	0
FOXJ3	22887	broad.mit.edu	37	1	42647591	42647591	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:42647591C>T	uc001che.2	-	14	2062	c.1750G>A	c.(1750-1752)GCA>ACA	p.A584T	FOXJ3_uc001chf.2_Missense_Mutation_p.A584T|FOXJ3_uc001chg.2_Missense_Mutation_p.A584T	NM_014947	NP_055762	Q9UPW0	FOXJ3_HUMAN	forkhead box J3	584					embryo development|organ development|pattern specification process|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(2)	2	Ovarian(52;0.01)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CTCTTACCTGCCATCGTTGTT	0.423			NA											6	24					0	0	0.001168	0	0
ERMAP	114625	broad.mit.edu	37	1	43308638	43308638	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:43308638C>T	uc001cic.1	+	12	1433	c.1163C>T	c.(1162-1164)TCT>TTT	p.S388F	ERMAP_uc001cid.1_RNA|ERMAP_uc001cie.1_Missense_Mutation_p.S388F|ERMAP_uc001cif.1_Missense_Mutation_p.S298F	NM_001017922	NP_001017922	Q96PL5	ERMAP_HUMAN	erythroblast membrane-associated protein	388	Cytoplasmic (Potential).|B30.2/SPRY.		Missing (in Sc-3 allele).			integral to membrane|plasma membrane				ovary(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				CACAATTTCTCTGGCCCCCTT	0.453			NA											7	142					0	0	0.004482	0	0
CDCP2	200008	broad.mit.edu	37	1	54606877	54606877	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:54606877G>T	uc001cwv.1	-	3	1505	c.657C>A	c.(655-657)GGC>GGA	p.G219G		NM_201546	NP_963840	Q5VXM1	CDCP2_HUMAN	CUB domain containing protein 2 precursor	219	CUB 2.					extracellular region				ovary(1)	1						GCCTGGTGCTGCCACAGTAGT	0.617			NA											7	31					5.18039e-06	6.39282e-06	0.00308	1	0
DNAJC6	9829	broad.mit.edu	37	1	65851517	65851517	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:65851517G>T	uc001dcd.1	+	7	916	c.752G>T	c.(751-753)TGT>TTT	p.C251F	DNAJC6_uc001dcc.1_Missense_Mutation_p.C282F|DNAJC6_uc010opc.1_Missense_Mutation_p.C238F|DNAJC6_uc001dce.1_Missense_Mutation_p.C308F	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	251	C2 tensin-type.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						AGGAATGGATGTCGCCCTTAC	0.418			NA											12	72					5.50884e-06	6.74235e-06	0.001368	1	0
WDR78	79819	broad.mit.edu	37	1	67303405	67303405	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:67303405T>A	uc001dcx.2	-	10	1625	c.1569A>T	c.(1567-1569)ATA>ATT	p.I523I	WDR78_uc001dcy.2_Silent_p.I523I|WDR78_uc009waw.2_Silent_p.I269I|WDR78_uc009wax.2_RNA	NM_024763	NP_079039	Q5VTH9	WDR78_HUMAN	WD repeat domain 78 isoform 1	523										ovary(2)	2						TGGGATTCTTTATTGACCAGC	0.308			NA											17	83					0	0	0.00499	0	0
IL12RB2	3595	broad.mit.edu	37	1	67816592	67816592	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:67816592T>C	uc001ddu.2	+	9	1718	c.1078T>C	c.(1078-1080)TAT>CAT	p.Y360H	IL12RB2_uc010oqi.1_Missense_Mutation_p.Y360H|IL12RB2_uc010oqj.1_Missense_Mutation_p.Y360H|IL12RB2_uc010oqk.1_RNA|IL12RB2_uc010oql.1_Missense_Mutation_p.Y360H|IL12RB2_uc010oqm.1_Missense_Mutation_p.Y360H|IL12RB2_uc010oqn.1_RNA	NM_001559	NP_001550	Q99665	I12R2_HUMAN	interleukin 12 receptor, beta 2 precursor	360	Fibronectin type-III 3.|Extracellular (Potential).				positive regulation of cell proliferation|positive regulation of interferon-gamma production	integral to plasma membrane	cytokine receptor activity			ovary(2)|central_nervous_system(1)	3						AATTCTCCACTATCAGGTGAC	0.473			NA											11	62					0	0	0.010729	0	0
ZRANB2	9406	broad.mit.edu	37	1	71534972	71534972	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:71534972C>A	uc001dft.2	-	8	824	c.757G>T	c.(757-759)GGG>TGG	p.G253W	ZRANB2_uc001dfs.2_Missense_Mutation_p.G253W|uc010oqr.1_5'Flank|MIR186_hsa-mir-186|MI0000483_5'Flank	NM_203350	NP_976225	O95218	ZRAB2_HUMAN	zinc finger protein 265 isoform 1	253	Arg/Ser-rich.|Required for nuclear targeting.				mRNA processing|RNA splicing	nucleus	protein binding|RNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2						GATTTCGACCCACGAGATCTC	0.423			NA											29	82					1.16021e-09	1.64797e-09	0.007291	1	0
DNAJB4	11080	broad.mit.edu	37	1	78479070	78479070	+	Missense_Mutation	SNP	C	C	G	rs141666453		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:78479070C>G	uc001dij.2	+	2	706	c.547C>G	c.(547-549)CGA>GGA	p.R183G	DNAJB4_uc010orn.1_Missense_Mutation_p.R68G	NM_007034	NP_008965	Q9UDY4	DNJB4_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 4	183					protein folding|response to heat|response to unfolded protein	cytoplasm|plasma membrane	heat shock protein binding|unfolded protein binding				0						GAAGATTTCTCGAAAAAGGCT	0.398			NA											29	85					0	0	0.010818	0	0
TTLL7	79739	broad.mit.edu	37	1	84385411	84385411	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:84385411C>G	uc001djc.2	-	13	1867	c.1471G>C	c.(1471-1473)GAG>CAG	p.E491Q	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	491					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		TTATTCAACTCTCGCTGGAAT	0.348			NA											12	80					0	0	0.001855	0	0
SYDE2	84144	broad.mit.edu	37	1	85666082	85666082	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:85666082G>A	uc009wcm.2	-	1	647	c.598C>T	c.(598-600)CTG>TTG	p.L200L	SYDE2_uc001dku.3_Silent_p.L200L	NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	200					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		AGGGACAGCAGACGCCCTTTG	0.607			NA											12	166					0	0	0.00245	0	0
GBP6	163351	broad.mit.edu	37	1	89849314	89849314	+	Splice_Site	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:89849314G>A	uc001dnf.2	+	9	1742	c.1468_splice	c.e9+1	p.V490_splice	GBP6_uc010ost.1_Splice_Site_p.V360_splice	NM_198460	NP_940862	Q6ZN66	GBP6_HUMAN	guanylate binding protein family, member 6								GTP binding|GTPase activity			ovary(2)	2		Lung NSC(277;0.0908)		all cancers(265;0.0108)|Epithelial(280;0.0398)		GCAGTAGCAGGTATGGGGCAG	0.473			NA											10	125					0	0	0.010729	0	0
ZNF644	84146	broad.mit.edu	37	1	91405710	91405710	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:91405710T>A	uc001dnw.2	-	3	1343	c.1201A>T	c.(1201-1203)ACT>TCT	p.T401S	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron|ZNF644_uc001dny.1_Missense_Mutation_p.T401S	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	401					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		GTACTGAAAGTAGCAGGTGAC	0.393			NA											34	105					0	0	0.003271	0	0
SASS6	163786	broad.mit.edu	37	1	100568609	100568609	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:100568609C>A	uc001dsu.2	-	14	1717	c.1576G>T	c.(1576-1578)GGG>TGG	p.G526W	SASS6_uc009wdz.2_Missense_Mutation_p.G359W	NM_194292	NP_919268	Q6UVJ0	SAS6_HUMAN	spindle assembly abnormal protein 6	526					centriole replication	centriole				upper_aerodigestive_tract(1)|ovary(1)	2		all_epithelial(167;4.58e-06)|all_lung(203;0.00125)|Lung NSC(277;0.00131)		Epithelial(280;0.085)|all cancers(265;0.139)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.197)		TAACCAATCCCACAGGTTGGG	0.378			NA											24	52					2.70639e-06	3.3838e-06	0.002299	1	0
AMY2B	280	broad.mit.edu	37	1	104114861	104114861	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:104114861A>G	uc001duq.2	+	4	914	c.298A>G	c.(298-300)AGA>GGA	p.R100G	AMY2B_uc010ouo.1_RNA|LOC648740_uc001dur.2_Missense_Mutation_p.R100G	NM_020978	NP_066188	P19961	AMY2B_HUMAN	amylase, pancreatic, alpha-2B precursor	100					carbohydrate metabolic process|digestion	extracellular region	alpha-amylase activity|metal ion binding				0		all_epithelial(167;3.05e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000451)		Colorectal(144;0.0669)|all cancers(265;0.083)|Epithelial(280;0.094)|Lung(183;0.112)		CATGGTGACTAGATGTAACAA	0.358			NA											25	171					0	0	0.003954	0	0
C1orf59	113802	broad.mit.edu	37	1	109191437	109191437	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:109191437G>T	uc001dvt.3	-	8	1171	c.933C>A	c.(931-933)GTC>GTA	p.V311V	C1orf59_uc001dvu.3_Silent_p.V311V|C1orf59_uc009wer.2_3'UTR	NM_001102592	NP_001096062	Q5T8I9	HENMT_HUMAN	hypothetical protein LOC113802	311					gene silencing by RNA|piRNA metabolic process	P granule	metal ion binding|O-methyltransferase activity|RNA binding|RNA methyltransferase activity				0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0152)|Lung(183;0.0895)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.163)		CAAAGCATGGGACAGGGGCCT	0.512			NA											13	74					0.000219431	0.000247661	0.00245	1	0
DRAM2	128338	broad.mit.edu	37	1	111663261	111663261	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:111663261C>A	uc001ead.3	-	6	651	c.394G>T	c.(394-396)GGC>TGC	p.G132C	DRAM2_uc001eae.3_Missense_Mutation_p.G132C|DRAM2_uc009wfy.2_RNA|DRAM2_uc001eaf.3_Missense_Mutation_p.G2C	NM_178454	NP_848549	Q6UX65	DRAM2_HUMAN	transmembrane protein 77	132	Helical; (Potential).				apoptosis|induction of apoptosis	Golgi apparatus|integral to membrane|lysosomal membrane					0						TATAATGAGCCCATACCAAAG	0.403			NA											12	44					4.3838e-07	5.6924e-07	0.001855	1	0
CHIA	27159	broad.mit.edu	37	1	111861169	111861169	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:111861169G>A	uc001eas.2	+	9	887	c.784G>A	c.(784-786)GTT>ATT	p.V262I	CHIA_uc001ear.2_Missense_Mutation_p.V154I|CHIA_uc001eaq.2_Missense_Mutation_p.V154I|CHIA_uc009wgc.2_Missense_Mutation_p.V154I|CHIA_uc001eat.2_Missense_Mutation_p.V101I|CHIA_uc001eav.2_Missense_Mutation_p.V101I|CHIA_uc001eau.2_Missense_Mutation_p.V101I|CHIA_uc009wgd.2_Missense_Mutation_p.V101I	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	262					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		GAAGCTCATCGTTGGATTCCC	0.537			NA											14	131					0	0	0.001855	0	0
HAO2	51179	broad.mit.edu	37	1	119925580	119925580	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:119925580G>T	uc001ehq.1	+	4	526	c.174G>T	c.(172-174)GTG>GTT	p.V58V	HAO2_uc001ehr.1_Silent_p.V58V	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	58	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		TGTCTGAGGTGGACACCAGAA	0.552			NA											9	49					1.08611e-07	1.43895e-07	0.010729	1	0
NOTCH2	4853	broad.mit.edu	37	1	120459031	120459031	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:120459031C>A	uc001eik.2	-	34	6570	c.6314G>T	c.(6313-6315)CGG>CTG	p.R2105L		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	2105	Cytoplasmic (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGCACTGGGCCGTCTAGACTT	0.547			NA	N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				16	65					1.67942e-08	2.29792e-08	0.006122	1	0
NOTCH2	4853	broad.mit.edu	37	1	120512153	120512153	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:120512153C>G	uc001eik.2	-	6	1345	c.1089G>C	c.(1087-1089)ATG>ATC	p.M363I	NOTCH2_uc001eil.2_Missense_Mutation_p.M363I|NOTCH2_uc001eim.3_Missense_Mutation_p.M280I	NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	363	Extracellular (Potential).|EGF-like 9; calcium-binding (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCTCTGGGCACATGCAAGAGA	0.557			NA	N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				4	39					0	0	0.009096	0	0
NOTCH2NL	388677	broad.mit.edu	37	1	145273425	145273425	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:145273425C>T	uc001emn.3	+	3	649	c.279C>T	c.(277-279)ACC>ACT	p.T93T	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc001emm.3_Silent_p.T93T|NOTCH2NL_uc001emo.2_Silent_p.T93T|NOTCH2NL_uc010oyh.1_RNA	NM_203458	NP_982283	Q7Z3S9	NT2NL_HUMAN	Notch homolog 2 N-terminal like protein	93	EGF-like 3.				cell differentiation|multicellular organismal development|Notch signaling pathway	cytoplasm|extracellular region	calcium ion binding			ovary(1)	1						ATGAGTGCACCTGTCAAGTCG	0.483			NA											32	545					0	0	0.004878	0	0
FMO5	2330	broad.mit.edu	37	1	146684991	146684991	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:146684991C>A	uc001epi.2	-	4	760	c.371G>T	c.(370-372)GGC>GTC	p.G124V	FMO5_uc001eph.3_Missense_Mutation_p.G124V|FMO5_uc001epj.2_Missense_Mutation_p.G124V|FMO5_uc001epk.3_Missense_Mutation_p.G124V	NM_001461	NP_001452	P49326	FMO5_HUMAN	flavin containing monooxygenase 5 isoform 1	124						integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			ovary(3)	3	all_hematologic(923;0.0487)					TTCCCATTGGCCTGAAGTGGC	0.473			NA											10	337					2.74318e-10	3.98314e-10	0.006214	1	0
RFX5	5993	broad.mit.edu	37	1	151314798	151314798	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:151314798C>T	uc001exv.1	-	11	1929	c.1715G>A	c.(1714-1716)AGA>AAA	p.R572K	RFX5_uc001exw.1_Missense_Mutation_p.R572K|RFX5_uc009wmr.1_Missense_Mutation_p.R572K|RFX5_uc010pcx.1_Missense_Mutation_p.R532K	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	572						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			CTTTTGGCTTCTGCTGCCCTT	0.483			NA											8	189					0	0	0.004482	0	0
RFX5	5993	broad.mit.edu	37	1	151314850	151314850	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:151314850C>T	uc001exv.1	-	11	1877	c.1663G>A	c.(1663-1665)GAA>AAA	p.E555K	RFX5_uc001exw.1_Missense_Mutation_p.E555K|RFX5_uc009wmr.1_Missense_Mutation_p.E555K|RFX5_uc010pcx.1_Missense_Mutation_p.E515K	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	555						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			ATTTTATCTTCTGCTTCTTTG	0.532			NA											15	222					0	0	0.00245	0	0
FLG	2312	broad.mit.edu	37	1	152280761	152280761	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:152280761C>A	uc001ezu.1	-	3	6637	c.6601G>T	c.(6601-6603)GAT>TAT	p.D2201Y		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2201	Ser-rich.|Filaggrin 13.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTAGAGCCATCTCCTGATTGT	0.552			NA							Ichthyosis				70	592					4.94307e-48	8.9749e-48	0.00361	1	0
FLG2	388698	broad.mit.edu	37	1	152324299	152324299	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:152324299G>T	uc001ezw.3	-	3	6036	c.5963C>A	c.(5962-5964)TCC>TAC	p.S1988Y	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1988	Filaggrin 9.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGAACTGAGGATCCTGACTC	0.527			NA											149	404					1.55176e-64	2.82729e-64	0.00361	1	0
CRNN	49860	broad.mit.edu	37	1	152382233	152382233	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:152382233C>A	uc001ezx.2	-	3	1399	c.1325G>T	c.(1324-1326)TGG>TTG	p.W442L		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	442					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCATCAACCCATTCCTCACC	0.582			NA											26	72					2.79863e-10	4.05239e-10	0.004656	1	0
KPRP	448834	broad.mit.edu	37	1	152733726	152733726	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:152733726G>C	uc001fal.1	+	2	1720	c.1662G>C	c.(1660-1662)CGG>CGC	p.R554R		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	554						cytoplasm		p.R554Q(1)		ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCCAGAGCGGAGGGGTCAGG	0.542			NA											10	88					0	0	0.006214	0	0
SPRR1B	6699	broad.mit.edu	37	1	153004868	153004868	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:153004868T>C	uc001fba.2	+	2	111	c.47T>C	c.(46-48)CTT>CCT	p.L16P	SPRR1B_uc009wnx.1_RNA	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	16	2 X 12 AA approximate repeats.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCCCCTCAGCTTCAGCAGCAG	0.572			NA											32	155					0	0	0.003271	0	0
SPRR2B	6701	broad.mit.edu	37	1	153043118	153043118	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:153043118C>A	uc001fbg.2	-	2	261	c.198G>T	c.(196-198)AAG>AAT	p.K66N	SPRR2D_uc009wnz.2_Intron|SPRR2A_uc001fbf.2_Intron|SPRR2A_uc009woa.2_Intron	NM_001017418	NP_001017418	P35325	SPR2B_HUMAN	small proline-rich protein 2B	66					keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			TCGGTGGATACTTTGGCTGGC	0.542			NA											68	193					3.54697e-40	6.41774e-40	0.00361	1	0
CHRNB2	1141	broad.mit.edu	37	1	154544067	154544067	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:154544067C>T	uc001ffg.2	+	5	1032	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	256	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	TCCTTGTCTTCTACCTGCCAT	0.547			NA											35	179					0	0	0.002836	0	0
DAP3	7818	broad.mit.edu	37	1	155697461	155697461	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:155697461G>C	uc001flq.2	+	7	704	c.535G>C	c.(535-537)GAT>CAT	p.D179H	DAP3_uc001flr.2_Missense_Mutation_p.D179H|DAP3_uc001fls.2_Missense_Mutation_p.D179H|DAP3_uc010pgl.1_Missense_Mutation_p.D138H|DAP3_uc001flt.2_Missense_Mutation_p.D145H|DAP3_uc001flu.2_Missense_Mutation_p.D179H|DAP3_uc010pgm.1_Missense_Mutation_p.D145H	NM_033657	NP_387506	P51398	RT29_HUMAN	death-associated protein 3	179					induction of apoptosis by extracellular signals	mitochondrial ribosome|nucleolus|small ribosomal subunit	protein binding			ovary(1)	1	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)					ACAGCGCTTTGATCAACCTTT	0.443			NA											6	134					0	0	0.001168	0	0
SYT11	23208	broad.mit.edu	37	1	155851088	155851088	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:155851088C>A	uc001fmg.2	+	4	1348	c.1085C>A	c.(1084-1086)TCT>TAT	p.S362Y	SYT11_uc010pgq.1_Missense_Mutation_p.S55Y	NM_152280	NP_689493	Q9BT88	SYT11_HUMAN	synaptotagmin XI	362	C2 2.|Cytoplasmic (Potential).					cell junction|synaptic vesicle membrane	protein binding|transporter activity			ovary(1)|skin(1)	2	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;0.000162)			TTCAATGAATCTTTCATCTAC	0.488			NA											126	509					9.186e-65	1.67661e-64	0.00361	1	0
KIAA0907	22889	broad.mit.edu	37	1	155887306	155887306	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:155887306C>T	uc001fmi.1	-	11	1448	c.1424G>A	c.(1423-1425)GGA>GAA	p.G475E	KIAA0907_uc001fmj.1_Missense_Mutation_p.G475E|KIAA0907_uc009wrk.1_Missense_Mutation_p.G332E|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	475											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TCCAAGCAGTCCAGATTCCCG	0.363			NA											7	367					0	0	0.004482	0	0
NTRK1	4914	broad.mit.edu	37	1	156846229	156846230	+	Missense_Mutation	DNP	TC	TC	AT			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	TC	TC	-	-	TC	TC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:156846229_156846230TC>AT	uc001fqh.1	+	14	1726_1727	c.1670_1671TC>AT	c.(1669-1671)TTC>TAT	p.F557Y	NTRK1_uc001fqf.1_Missense_Mutation_p.F521Y|NTRK1_uc009wsi.1_Missense_Mutation_p.F256Y|NTRK1_uc001fqi.1_Missense_Mutation_p.F551Y|NTRK1_uc009wsk.1_Missense_Mutation_p.F554Y	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	557	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	CGGCAGGACTTCCAGCGTGAGG	0.644			NA	T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			6	47					0	0	0.004672	0	0
FCRL5	83416	broad.mit.edu	37	1	157497603	157497603	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:157497603C>A	uc001fqu.2	-	9	1922	c.1764G>T	c.(1762-1764)GAG>GAT	p.E588D	FCRL5_uc009wsm.2_Missense_Mutation_p.E588D|FCRL5_uc010phv.1_Missense_Mutation_p.E588D|FCRL5_uc010phw.1_Missense_Mutation_p.E503D	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	588	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				CTCTCGGGGCCTCACAGTGAA	0.592			NA											5	107					0.000602214	0.000659027	0.000602	1	0
OR10T2	128360	broad.mit.edu	37	1	158368994	158368994	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158368994G>T	uc010pih.1	-	1	263	c.263C>A	c.(262-264)TCA>TAA	p.S88*		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CTTGGTGTCTGAGAGCAGGTG	0.493			NA											16	40					1.3612e-06	1.72463e-06	0.003163	1	0
SPTA1	6708	broad.mit.edu	37	1	158612255	158612255	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158612255C>A	uc001fst.1	-	33	4882	c.4683G>T	c.(4681-4683)CTG>CTT	p.L1561L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1561	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGGAGTTCCCCAGGTTGATGA	0.478			NA											11	138					3.07112e-06	3.81242e-06	0.010729	1	0
SPTA1	6708	broad.mit.edu	37	1	158612641	158612641	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158612641G>A	uc001fst.1	-	32	4767	c.4568C>T	c.(4567-4569)GCC>GTC	p.A1523V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1523	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCATCACAGGCTGTGGGCAG	0.443			NA											12	213					0	0	0.001855	0	0
SPTA1	6708	broad.mit.edu	37	1	158623069	158623069	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158623069C>T	uc001fst.1	-	22	3382	c.3183G>A	c.(3181-3183)GAG>GAA	p.E1061E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1061					actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTTACTGGTTCTCAATCTGCT	0.507			NA											6	212					0	0	0.00308	0	0
SPTA1	6708	broad.mit.edu	37	1	158637767	158637767	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158637767A>G	uc001fst.1	-	15	2118	c.1919T>C	c.(1918-1920)ATA>ACA	p.I640T		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	640	Spectrin 7.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					AGTTTTCTGTATGTTTTCCAG	0.463			NA											27	174					0	0	0.004656	0	0
OR6K3	391114	broad.mit.edu	37	1	158687521	158687521	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158687521G>T	uc010pip.1	-	1	433	c.433C>A	c.(433-435)CCT>ACT	p.P145T		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	145	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					TAGCGAAGAGGGTTGCAGATG	0.502			NA											15	143					4.93089e-13	7.60391e-13	0.00245	1	0
DARC	2532	broad.mit.edu	37	1	159175730	159175730	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:159175730G>T	uc001fto.2	+	2	741	c.501G>T	c.(499-501)CTG>CTT	p.L167L	DARC_uc001ftp.3_Silent_p.L169L	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	167	Helical; Name=4; (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					GCCTCACCCTGGGGCTCACTG	0.622			NA											6	21					0.000157383	0.000178208	0.00308	1	0
KCNJ10	3766	broad.mit.edu	37	1	160011198	160011198	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:160011198G>T	uc001fuw.1	-	2	1275	c.1125C>A	c.(1123-1125)CGC>CGA	p.R375R		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	375	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CATTGCTGATGCGCACACTAA	0.527	GBM(167;1368 2014 14817 36425 43215)		NA											8	26					0.00307968	0.00330101	0.00308	1	0
DCAF8	50717	broad.mit.edu	37	1	160209744	160209744	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:160209744G>A	uc001fvo.2	-	4	778	c.466C>T	c.(466-468)CCT>TCT	p.P156S	DCAF8_uc001fvn.2_Missense_Mutation_p.P156S|DCAF8_uc009wth.2_Missense_Mutation_p.P156S|DCAF8_uc010pjb.1_Missense_Mutation_p.P156S|DCAF8_uc010pjc.1_Missense_Mutation_p.P310S|DCAF8_uc001fvq.3_Missense_Mutation_p.P156S|DCAF8_uc001fvp.3_Missense_Mutation_p.P156S|uc010pjd.1_3'UTR	NM_015726	NP_056541	Q5TAQ9	DCAF8_HUMAN	DDB1 and CUL4 associated factor 8	156						CUL4 RING ubiquitin ligase complex	protein binding			skin(2)	2						CGAAGGGCAGGGAGGGCTTGC	0.612			NA											16	61					0	0	0.008871	0	0
TOMM40L	84134	broad.mit.edu	37	1	161198067	161198067	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:161198067G>T	uc001fzd.2	+	7	805	c.576G>T	c.(574-576)GGG>GGT	p.G192G	TOMM40L_uc010pkl.1_Silent_p.G158G|TOMM40L_uc009wue.2_Silent_p.G74G|TOMM40L_uc009wuf.1_RNA|TOMM40L_uc001fze.2_Silent_p.G192G	NM_032174	NP_115550	Q969M1	TM40L_HUMAN	translocase of outer mitochondrial membrane 40	192					protein transport	mitochondrial outer membrane|pore complex	porin activity|voltage-gated anion channel activity			large_intestine(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			GCGAAGAGGGGGCCATCTTGA	0.597			NA									OREG0013943	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	68					2.31682e-05	2.75172e-05	0.003163	1	0
FCGR3A	2214	broad.mit.edu	37	1	161519571	161519571	+	Splice_Site	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:161519571C>A	uc001gat.3	-	2	94	c.-43_splice	c.e2-1		FCGR3A_uc001gar.2_Missense_Mutation_p.G22W|FCGR3A_uc001gas.2_Missense_Mutation_p.G22W|FCGR3A_uc009wuh.2_Splice_Site|FCGR3A_uc009wui.2_Translation_Start_Site	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor						immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ATCCGGAGCCCTAAAGGGACC	0.522			NA											10	57					2.17888e-05	2.60269e-05	0.006214	1	0
FCGR3B	2215	broad.mit.edu	37	1	161596073	161596073	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:161596073C>G	uc009wul.2	-	4	713	c.439G>C	c.(439-441)GAC>CAC	p.D147H		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	147	Ig-like C2-type 2.				immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TACTTCCTGTCTTTGCCATTC	0.463			NA											8	66					0	0	0.004482	0	0
FCGR3B	2215	broad.mit.edu	37	1	161599655	161599655	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:161599655C>T	uc009wul.2	-	3	506	c.232G>A	c.(232-234)GCT>ACT	p.A78T		NM_000570	NP_000561	O75015	FCG3B_HUMAN	low affinity immunoglobulin gamma Fc region	78	Ig-like C2-type 1.				immune response	anchored to membrane|extracellular region|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ACTGTGGCAGCGTCAATGAAG	0.532			NA											8	156					0	0	0.008291	0	0
FMO3	2328	broad.mit.edu	37	1	171076937	171076937	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:171076937G>T	uc001ghi.2	+	4	554	c.443G>T	c.(442-444)GGA>GTA	p.G148V	FMO3_uc001ghh.2_Missense_Mutation_p.G148V|FMO3_uc010pmb.1_Missense_Mutation_p.G128V|FMO3_uc010pmc.1_Missense_Mutation_p.G85V	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	148					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTTTGTTCCGGACATCATGTG	0.403			NA											32	92					4.4194e-11	6.55377e-11	0.002836	1	0
FMO2	2327	broad.mit.edu	37	1	171165890	171165890	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:171165890G>A	uc001ghk.1	+	4	541	c.424G>A	c.(424-426)GCA>ACA	p.A142T	FMO2_uc010pmd.1_5'UTR	NM_001460	NP_001451	Q99518	FMO2_HUMAN	flavin containing monooxygenase 2	142					drug metabolic process|NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|host cell microsome|integral to membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					TGTCTTTGACGCAGTTATGGT	0.488			NA											25	101					0	0	0.00632	0	0
METTL13	51603	broad.mit.edu	37	1	171759628	171759628	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:171759628G>T	uc001ghz.2	+	5	1693	c.1346G>T	c.(1345-1347)CGG>CTG	p.R449L	METTL13_uc001gia.2_Missense_Mutation_p.R363L|METTL13_uc001gib.2_Missense_Mutation_p.R293L|METTL13_uc010pml.1_Missense_Mutation_p.R448L	NM_015935	NP_057019	Q8N6R0	MTL13_HUMAN	CGI-01 protein isoform 1	449							methyltransferase activity|protein binding			kidney(1)	1						AAGAAGCAGCGGCCTGCTGAT	0.532			NA											29	95					2.68265e-12	4.08263e-12	0.002836	1	0
RABGAP1L	9910	broad.mit.edu	37	1	174244990	174244990	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:174244990A>G	uc001gjx.2	+	9	1268	c.1073A>G	c.(1072-1074)TAT>TGT	p.Y358C	RABGAP1L_uc009wwq.1_Missense_Mutation_p.Y370C|RABGAP1L_uc001gjw.2_Missense_Mutation_p.Y321C|RABGAP1L_uc001gjy.2_Missense_Mutation_p.Y26C|RABGAP1L_uc001gjz.2_Missense_Mutation_p.Y5C	NM_014857	NP_055672	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like isoform A	358					regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			ovary(2)|lung(1)|kidney(1)	4						GGAAAGAGCTATGATGGGAGA	0.353			NA											7	155					0	0	0.001984	0	0
RABGAP1L	9910	broad.mit.edu	37	1	174274250	174274250	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:174274250G>A	uc001gjx.2	+	11	1645	c.1450G>A	c.(1450-1452)GAT>AAT	p.D484N	RABGAP1L_uc009wwq.1_Missense_Mutation_p.D496N|RABGAP1L_uc001gjw.2_Missense_Mutation_p.D447N|RABGAP1L_uc001gjy.2_Missense_Mutation_p.D152N|RABGAP1L_uc001gjz.2_Missense_Mutation_p.D131N	NM_014857	NP_055672	Q5R372	RBG1L_HUMAN	RAB GTPase activating protein 1-like isoform A	484					regulation of protein localization	early endosome|Golgi apparatus|nucleus	Rab GTPase activator activity			ovary(2)|lung(1)|kidney(1)	4						ACCCCAGGATGATGAAGCAGA	0.468			NA											4	65					0	0	0.000602	0	0
PAPPA2	60676	broad.mit.edu	37	1	176525883	176525883	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:176525883G>C	uc001gkz.2	+	2	1589	c.425G>C	c.(424-426)GGA>GCA	p.G142A	PAPPA2_uc001gky.1_Missense_Mutation_p.G142A|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	142					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GAGCTGCTGGGAGATGATGAC	0.562			NA											37	130					0	0	0.004289	0	0
PAPPA2	60676	broad.mit.edu	37	1	176679222	176679222	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:176679222C>A	uc001gkz.2	+	11	4725	c.3561C>A	c.(3559-3561)TAC>TAA	p.Y1187*	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1187					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CCAAAGGATACTTGGATCAAT	0.453			NA											39	126					1.03484e-13	1.61009e-13	0.005524	1	0
ASTN1	460	broad.mit.edu	37	1	176845691	176845691	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:176845691C>A	uc001glc.2	-	21	3657	c.3445G>T	c.(3445-3447)GAT>TAT	p.D1149Y	ASTN1_uc001glb.1_Missense_Mutation_p.D1149Y|ASTN1_uc001gld.1_Missense_Mutation_p.D1149Y	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1157					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TTGACATCATCCACCACGGGG	0.577			NA											13	63					3.27435e-08	4.42801e-08	0.00245	1	0
XPR1	9213	broad.mit.edu	37	1	180832881	180832881	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:180832881G>T	uc001goi.2	+	12	1731	c.1539G>T	c.(1537-1539)CTG>CTT	p.L513L	XPR1_uc009wxn.2_Silent_p.L448L	NM_004736	NP_004727	Q9UBH6	XPR1_HUMAN	xenotropic and polytropic retrovirus receptor	513	EXS.|Helical; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0						TCTTTTACCTGTGGATTGTCT	0.388			NA											54	147					7.41606e-26	1.29905e-25	0.00361	1	0
CACNA1E	777	broad.mit.edu	37	1	181765848	181765848	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:181765848C>G	uc001gow.2	+	46	6289	c.6124C>G	c.(6124-6126)CGA>GGA	p.R2042G	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1930G|CACNA1E_uc009wxt.2_Missense_Mutation_p.R1311G	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2085	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGAGCGGGGACGATCAAAAGA	0.562			NA											11	37					0	0	0.010729	0	0
EDEM3	80267	broad.mit.edu	37	1	184681671	184681671	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:184681671C>G	uc010pok.1	-	14	1693	c.1432G>C	c.(1432-1434)GAA>CAA	p.E478Q	EDEM3_uc010pol.1_RNA|EDEM3_uc010pom.1_Missense_Mutation_p.E478Q	NM_025191	NP_079467	Q9BZQ6	EDEM3_HUMAN	ER degradation enhancer, mannosidase alpha-like	478					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding			skin(1)	1						ATAATGTCTTCTTTATCAGCA	0.279			NA											5	63					0	0	0.000602	0	0
PTGS2	5743	broad.mit.edu	37	1	186643804	186643804	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:186643804C>A	uc001gsb.2	-	10	1633	c.1496G>T	c.(1495-1497)CGG>CTG	p.R499L	PTGS2_uc009wyo.2_Missense_Mutation_p.R346L	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	499					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	GGCATCTGGCCGAGGCTTTTC	0.478			NA											23	125					3.62473e-10	5.21961e-10	0.012319	1	0
PTGS2	5743	broad.mit.edu	37	1	186646911	186646911	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:186646911C>G	uc001gsb.2	-	5	646	c.509G>C	c.(508-510)AGA>ACA	p.R170T	PTGS2_uc009wyo.2_Intron	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	170					cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	GAACTTTCTTCTTAGAAGCAA	0.393			NA											6	90					0	0	0.001168	0	0
FAM5C	339479	broad.mit.edu	37	1	190067232	190067232	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:190067232C>A	uc001gse.1	-	8	2449	c.2217G>T	c.(2215-2217)GTG>GTT	p.V739V	FAM5C_uc010pot.1_Silent_p.V637V	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	739						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GGATCCTCACCACCTCACTAG	0.438			NA											45	120					4.64027e-19	7.87713e-19	0.00361	1	0
FAM5C	339479	broad.mit.edu	37	1	190203503	190203503	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:190203503T>A	uc001gse.1	-	5	955	c.723A>T	c.(721-723)CAA>CAT	p.Q241H	FAM5C_uc010pot.1_Missense_Mutation_p.Q139H	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	241						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CCAACATACCTTGCAACTGAA	0.373			NA											6	73					0	0	0.001984	0	0
RGS18	64407	broad.mit.edu	37	1	192150570	192150570	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:192150570G>T	uc001gsg.2	+	4	608	c.432G>T	c.(430-432)CAG>CAT	p.Q144H		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	144	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						AATTTATACAGACTGATGCCC	0.254			NA											4	80					0.000602214	0.000659027	0.000602	1	0
KCNT2	343450	broad.mit.edu	37	1	196227521	196227521	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:196227521G>T	uc001gtd.1	-	26	3074	c.3014C>A	c.(3013-3015)TCG>TAG	p.S1005*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.S938*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.S981*|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Nonsense_Mutation_p.S509*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1005	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						GGGATGGTCCGACTGATCACT	0.493			NA											28	98					4.06085e-26	7.14929e-26	0.007291	1	0
KCNT2	343450	broad.mit.edu	37	1	196285133	196285133	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:196285133C>A	uc001gtd.1	-	21	2432	c.2372G>T	c.(2371-2373)GGA>GTA	p.G791V	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.G717V|KCNT2_uc001gtf.1_Missense_Mutation_p.G767V|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.G767V|KCNT2_uc001gth.1_Missense_Mutation_p.G288V	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	791	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AAAAGTCACTCCACACCTGAG	0.393			NA											6	47					2.0095e-06	2.53066e-06	0.001984	1	0
CFH	3075	broad.mit.edu	37	1	196654293	196654293	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:196654293G>T	uc001gtj.3	+	7	1130	c.890G>T	c.(889-891)GGT>GTT	p.G297V	CFH_uc001gti.3_Missense_Mutation_p.G297V|CFH_uc009wyw.2_Missense_Mutation_p.G297V|CFH_uc009wyx.2_Missense_Mutation_p.G233V	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	297	Sushi 5.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TGTAGAAATGGTTTTTATCCT	0.403			NA											62	140					2.19297e-23	3.80309e-23	0.00361	1	0
ASPM	259266	broad.mit.edu	37	1	197091598	197091598	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:197091598T>G	uc001gtu.2	-	14	3775	c.3518A>C	c.(3517-3519)CAA>CCA	p.Q1173P	ASPM_uc001gtv.2_Missense_Mutation_p.Q1173P|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1173	CH 2.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TGAACCAGTTTGCGTACATTC	0.413			NA											14	40					0	0	0.001855	0	0
FAM58B	339521	broad.mit.edu	37	1	200182769	200182769	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:200182769G>T	uc009wzi.1	+	1	114	c.78G>T	c.(76-78)CCG>CCT	p.P26P		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	26					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					CCGCAGCGCCGGCAGCCAGGG	0.468			NA											11	21					3.86212e-05	4.51013e-05	0.008291	1	0
FAM58B	339521	broad.mit.edu	37	1	200183300	200183300	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:200183300C>A	uc009wzi.1	+	1	645	c.609C>A	c.(607-609)GCC>GCA	p.A203A		NM_001105517	NP_001098987	P0C7Q3	FA58B_HUMAN	family with sequence similarity 58 member B	203					regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent		protein kinase binding				0	Prostate(682;0.19)					TCTACCTGGCCCTGCAGGTCT	0.622			NA											14	37					1.5842e-08	2.17619e-08	0.001855	1	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200817728	200817728	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:200817728G>T	uc001gvl.2	+	12	2134	c.1864G>T	c.(1864-1866)GGA>TGA	p.G622*	CAMSAP1L1_uc001gvk.2_Nonsense_Mutation_p.G611*|CAMSAP1L1_uc001gvm.2_Nonsense_Mutation_p.G595*	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	622						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGTAGACACTGGAATTCACGT	0.373			NA											31	106					1.74807e-11	2.6221e-11	0.010818	1	0
KIF21B	23046	broad.mit.edu	37	1	200959110	200959110	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:200959110C>A	uc001gvs.1	-	21	3409	c.3092G>T	c.(3091-3093)CGC>CTC	p.R1031L	KIF21B_uc001gvr.1_Missense_Mutation_p.R1031L|KIF21B_uc009wzl.1_Missense_Mutation_p.R1031L|KIF21B_uc010ppn.1_Missense_Mutation_p.R1031L	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1031					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						TAGCAGGAGGCGGGCTTCAGC	0.592			NA											10	76					1.76689e-08	2.40187e-08	0.006214	1	0
IGFN1	91156	broad.mit.edu	37	1	201185842	201185842	+	Missense_Mutation	SNP	G	G	A	rs143611839		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:201185842G>A	uc001gwc.2	+	5	1808	c.1036G>A	c.(1036-1038)GAG>AAG	p.E346K	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						GGGGGCTGGCGAGGCCCTGGA	0.657			NA											4	83					0	0	0.000602	0	0
PHLDA3	23612	broad.mit.edu	37	1	201437670	201437670	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:201437670T>C	uc001gwq.2	-	1	630	c.245A>G	c.(244-246)GAG>GGG	p.E82G	PHLDA3_uc009wzx.2_5'UTR	NM_012396	NP_036528	Q9Y5J5	PHLA3_HUMAN	pleckstrin homology-like domain, family A,	82	PH.				anatomical structure morphogenesis|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|negative regulation of protein kinase B signaling cascade	cytoplasm|intracellular membrane-bounded organelle|plasma membrane	identical protein binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-5-phosphate binding				0						GAAGTCGATCTCGCCGCCCCC	0.652			NA											6	110					0	0	0.001168	0	0
LGR6	59352	broad.mit.edu	37	1	202245499	202245499	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:202245499G>A	uc001gxu.2	+	5	494	c.494G>A	c.(493-495)CGC>CAC	p.R165H	LGR6_uc001gxv.2_Missense_Mutation_p.R113H|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Intron|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	165	LRR 4.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						TCCTCCCTCCGCCACCTCTGG	0.632			NA											4	95					0	0	0.009096	0	0
MYBPH	4608	broad.mit.edu	37	1	203138136	203138136	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:203138136G>T	uc001gzh.1	-	9	1374	c.1315C>A	c.(1315-1317)CTA>ATA	p.L439I	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	439	Ig-like C2-type 2.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		CGGATCTCTAGGGTGCAGACG	0.562	NSCLC(32;174 1025 14462 23899 42933)		NA											19	181					1.50039e-11	2.25707e-11	0.012319	1	0
ZC3H11A	9877	broad.mit.edu	37	1	203816441	203816441	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:203816441C>T	uc001hac.2	+	15	1788	c.1172C>T	c.(1171-1173)TCT>TTT	p.S391F	ZC3H11A_uc001had.2_Missense_Mutation_p.S391F|ZC3H11A_uc001hae.2_Missense_Mutation_p.S391F|ZC3H11A_uc001haf.2_Missense_Mutation_p.S391F|ZC3H11A_uc010pqm.1_Missense_Mutation_p.S337F|ZC3H11A_uc001hag.1_Missense_Mutation_p.S391F	NM_014827	NP_055642	O75152	ZC11A_HUMAN	zinc finger CCCH-type containing 11A	391	Potential.						nucleic acid binding|protein binding|zinc ion binding			lung(1)|central_nervous_system(1)	2	all_cancers(21;0.0904)|all_epithelial(62;0.234)		BRCA - Breast invasive adenocarcinoma(75;0.109)			ACTGATGATTCTACTTCAGGA	0.418			NA											5	46					0	0	0.000602	0	0
IKBKE	9641	broad.mit.edu	37	1	206667311	206667311	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:206667311C>T	uc001hdz.1	+	21	2472	c.2104C>T	c.(2104-2106)CGC>TGC	p.R702C	IKBKE_uc009xbv.1_3'UTR|IKBKE_uc001hea.1_Missense_Mutation_p.R617C	NM_014002	NP_054721	Q14164	IKKE_HUMAN	IKK-related kinase epsilon	702					DNA damage response, signal transduction resulting in induction of apoptosis|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of type I interferon production|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane|PML body	ATP binding|IkappaB kinase activity|NF-kappaB-inducing kinase activity|protein binding			ovary(3)|lung(3)|central_nervous_system(1)|skin(1)	8	Breast(84;0.137)					GGACAACAACCGCATCATCGA	0.602			NA											8	70					0	0	0.008291	0	0
CR1L	1379	broad.mit.edu	37	1	207896969	207896969	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:207896969A>C	uc001hga.3	+	12	1770	c.1649A>C	c.(1648-1650)CAT>CCT	p.H550P	CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	550						cytoplasm|extracellular region|membrane					0						TTAGGTTCACATGATGCTCTT	0.348			NA											3	24					0	0	0.000602	0	0
USH2A	7399	broad.mit.edu	37	1	215848726	215848726	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:215848726G>T	uc001hku.1	-	63	12914	c.12527C>A	c.(12526-12528)TCT>TAT	p.S4176Y		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4176	Extracellular (Potential).|Fibronectin type-III 27.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		AACAGGCTCAGACCAGCTCAG	0.527			NA								HNSCC(13;0.011)			37	152					5.71845e-15	9.1706e-15	0.005524	1	0
USH2A	7399	broad.mit.edu	37	1	215960039	215960039	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:215960039C>A	uc001hku.1	-	52	10747	c.10360G>T	c.(10360-10362)GGG>TGG	p.G3454W		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3454	Fibronectin type-III 19.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTTACACTCCCTGTATGAATG	0.433			NA								HNSCC(13;0.011)			31	96					7.11191e-15	1.13878e-14	0.002836	1	0
USH2A	7399	broad.mit.edu	37	1	216251676	216251676	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:216251676A>T	uc001hku.1	-	27	5714	c.5327T>A	c.(5326-5328)TTC>TAC	p.F1776Y		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1776	Laminin G-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATTTAACCGGAAGGTCAATAT	0.373			NA								HNSCC(13;0.011)			15	506					0	0	0.00499	0	0
USH2A	7399	broad.mit.edu	37	1	216258133	216258133	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:216258133C>G	uc001hku.1	-	25	5461	c.5074G>C	c.(5074-5076)GAT>CAT	p.D1692H		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1692	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CTCTGCCAATCCAGAGGTTCC	0.433			NA								HNSCC(13;0.011)			9	144					0	0	0.004482	0	0
USH2A	7399	broad.mit.edu	37	1	216371752	216371752	+	Nonsense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:216371752A>T	uc001hku.1	-	18	4373	c.3986T>A	c.(3985-3987)TTG>TAG	p.L1329*	USH2A_uc001hkv.2_Nonsense_Mutation_p.L1329*	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1329	Fibronectin type-III 3.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTATGGCTCCAAGCCAGTGAT	0.443			NA								HNSCC(13;0.011)			6	112					0	0	0.001168	0	0
WDR26	80232	broad.mit.edu	37	1	224586245	224586245	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:224586245C>T	uc001hop.3	-	11	1541	c.1175G>A	c.(1174-1176)CGA>CAA	p.R392Q	WDR26_uc001hoq.3_Missense_Mutation_p.R376Q|WDR26_uc010pvh.1_Missense_Mutation_p.R99Q	NM_025160	NP_079436	Q9H7D7	WDR26_HUMAN	WD repeat domain 26 isoform a	539	WD 4.					cytoplasm|nucleus					0				GBM - Glioblastoma multiforme(131;0.0104)		CAAAGCTAATCGGCCATTTTT	0.279			NA											4	94					0	0	0.001168	0	0
PRSS38	339501	broad.mit.edu	37	1	228003815	228003815	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:228003815G>T	uc001hrh.2	+	2	173	c.173G>T	c.(172-174)GGG>GTG	p.G58V		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	58					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						AGCATGGAGGGGAAAATCCTG	0.572			NA											14	77					3.99206e-14	6.30516e-14	0.007413	1	0
PRSS38	339501	broad.mit.edu	37	1	228003884	228003884	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:228003884G>T	uc001hrh.2	+	2	242	c.242G>T	c.(241-243)GGC>GTC	p.G81V		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	81	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CACTACGCAGGCCTCCACGTC	0.672			NA											16	72					2.39187e-15	3.87751e-15	0.008871	1	0
OBSCN	84033	broad.mit.edu	37	1	228495862	228495862	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:228495862G>T	uc009xez.1	+	47	12561	c.12517G>T	c.(12517-12519)GAT>TAT	p.D4173Y	OBSCN_uc001hsn.2_Missense_Mutation_p.D4173Y	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4173	Ig-like 43.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGTGACGGCCGATGAGGATGT	0.592			NA											31	55					4.15321e-07	5.41994e-07	0.009535	1	0
URB2	9816	broad.mit.edu	37	1	229771856	229771856	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:229771856C>T	uc001hts.1	+	4	1632	c.1496C>T	c.(1495-1497)TCT>TTT	p.S499F	URB2_uc009xfd.1_Missense_Mutation_p.S499F	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	499						nucleolus				central_nervous_system(2)|ovary(1)	3						ACGGTACTCTCTGCATGCCTC	0.577			NA											5	176					0	0	0.001168	0	0
GNPAT	8443	broad.mit.edu	37	1	231406679	231406679	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:231406679G>T	uc001hup.3	+	10	1661	c.1455G>T	c.(1453-1455)CTG>CTT	p.L485L	GNPAT_uc009xfp.2_Silent_p.L424L	NM_014236	NP_055051	O15228	GNPAT_HUMAN	glyceronephosphate O-acyltransferase	485					ether lipid biosynthetic process|fatty acid metabolic process|organ morphogenesis	peroxisomal matrix|peroxisomal membrane	glycerone-phosphate O-acyltransferase activity			ovary(3)|breast(1)	4	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				GGAACCAGCTGCTCAACATTT	0.468			NA											48	140					2.46787e-29	4.37429e-29	0.00361	1	0
TARBP1	6894	broad.mit.edu	37	1	234529421	234529421	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:234529421G>A	uc001hwd.2	-	27	4406	c.4406C>T	c.(4405-4407)TCG>TTG	p.S1469L		NM_005646	NP_005637	Q13395	TARB1_HUMAN	TAR RNA binding protein 1	1469					regulation of transcription from RNA polymerase II promoter|RNA processing	nucleus	RNA binding|RNA methyltransferase activity			ovary(2)|skin(1)	3	Ovarian(103;0.0339)	all_cancers(173;0.00995)|Prostate(94;0.0115)|all_epithelial(177;0.172)	OV - Ovarian serous cystadenocarcinoma(106;0.000263)			GTCGATGAGCGAGGCCACAAC	0.458			NA											5	140					0	0	0.001168	0	0
IRF2BP2	359948	broad.mit.edu	37	1	234743041	234743041	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:234743041G>T	uc001hwg.2	-	2	1637	c.1606C>A	c.(1606-1608)CAA>AAA	p.Q536K	IRF2BP2_uc009xfw.2_Missense_Mutation_p.Q146K|IRF2BP2_uc001hwf.2_Missense_Mutation_p.Q520K	NM_182972	NP_892017	Q7Z5L9	I2BP2_HUMAN	interferon regulatory factor 2 binding protein 2	536	Cys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	Ovarian(103;0.0303)	all_cancers(173;0.0236)|Prostate(94;0.0115)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)|Epithelial(3;6.2e-05)			TTGATGCTTTGTCTGGAGCAA	0.582			NA											22	120					6.44725e-10	9.24578e-10	0.002299	1	0
LYST	1130	broad.mit.edu	37	1	235976294	235976294	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:235976294G>A	uc001hxj.2	-	4	435	c.260C>T	c.(259-261)CCT>CTT	p.P87L	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.P87L	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	87					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTCTTGGACAGGTATCTTCCA	0.373			NA							Chediak-Higashsyndrome				6	26					0	0	0.001168	0	0
ZP4	57829	broad.mit.edu	37	1	238049056	238049056	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:238049056C>G	uc001hym.2	-	7	970	c.970G>C	c.(970-972)GAT>CAT	p.D324H	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	324	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GGGGTCATACCTTTGGCAATC	0.507	NSCLC(166;160 2029 11600 18754 19936)		NA											12	41					0	0	0.001368	0	0
RGS7	6000	broad.mit.edu	37	1	241099998	241099998	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:241099998G>T	uc001hyv.2	-	5	565	c.235C>A	c.(235-237)CTC>ATC	p.L79I	RGS7_uc010pyh.1_Missense_Mutation_p.L53I|RGS7_uc010pyj.1_5'UTR|RGS7_uc001hyu.2_Missense_Mutation_p.L79I|RGS7_uc009xgn.1_Intron|RGS7_uc001hyw.2_Missense_Mutation_p.L79I	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	79	DEP.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CCCAAATGGAGCGCCTCCACT	0.378			NA											21	121					7.87624e-14	1.23651e-13	0.00278	1	0
KMO	8564	broad.mit.edu	37	1	241731862	241731862	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:241731862C>A	uc009xgp.2	+	10	937	c.872C>A	c.(871-873)TCT>TAT	p.S291Y	KMO_uc001hyy.2_Missense_Mutation_p.S291Y|KMO_uc009xgo.1_Missense_Mutation_p.S291Y	NM_003679	NP_003670	O15229	KMO_HUMAN	kynurenine 3-monooxygenase	291					pyridine nucleotide biosynthetic process|response to salt stress	cytosol|integral to membrane|mitochondrial outer membrane	electron carrier activity|flavin adenine dinucleotide binding|kynurenine 3-monooxygenase activity|NAD(P)H oxidase activity			ovary(2)	2	Ovarian(103;0.103)|all_lung(81;0.23)		OV - Ovarian serous cystadenocarcinoma(106;0.0176)			GTAAAGTGCTCTTCATTTCAC	0.408			NA											11	99					3.07112e-06	3.81242e-06	0.010729	1	0
PLD5	200150	broad.mit.edu	37	1	242264009	242264009	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:242264009G>C	uc001hzn.1	-	9	1442	c.1315C>G	c.(1315-1317)CGC>GGC	p.R439G	PLD5_uc001hzl.3_Missense_Mutation_p.R377G|PLD5_uc001hzm.3_Missense_Mutation_p.R229G|PLD5_uc001hzo.1_Missense_Mutation_p.R347G			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	439	PLD phosphodiesterase 2.					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TACTTGTTGCGATTTAACCTA	0.443			NA											6	84					0	0	0.001168	0	0
C1orf101	257044	broad.mit.edu	37	1	244716057	244716057	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:244716057G>T	uc001iam.2	+	9	1029	c.970G>T	c.(970-972)GAT>TAT	p.D324Y	C1orf101_uc001iak.1_Intron|C1orf101_uc001ial.2_Missense_Mutation_p.D324Y|C1orf101_uc010pym.1_Missense_Mutation_p.D173Y|C1orf101_uc010pyn.1_Missense_Mutation_p.D257Y	NM_001130957	NP_001124429	Q5SY80	CA101_HUMAN	hypothetical protein LOC257044 isoform 1	324	Extracellular (Potential).					integral to membrane				ovary(1)|breast(1)	2	all_cancers(71;2.99e-05)|all_epithelial(71;0.00015)|all_neural(11;0.0269)|Breast(184;0.0654)|Glioma(6;0.0724)|Ovarian(71;0.0761)|all_lung(81;0.0874)|Lung NSC(105;0.121)		all cancers(7;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(106;0.001)|GBM - Glioblastoma multiforme(7;0.0154)			AAATCTTCCTGATGGTGGAAT	0.289			NA											7	79					1.04858e-14	1.67387e-14	0.006214	1	0
OR2M3	127062	broad.mit.edu	37	1	248366415	248366415	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:248366415G>T	uc010pzg.1	+	1	46	c.46G>T	c.(46-48)GGA>TGA	p.G16*		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CATCCTCCTGGGAATCTTCAA	0.463			NA											24	311					9.57634e-11	1.40615e-10	0.00333	1	0
OR2T33	391195	broad.mit.edu	37	1	248436683	248436683	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:248436683G>T	uc010pzi.1	-	1	434	c.434C>A	c.(433-435)TCG>TAG	p.S145*		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GAGCCAACACGACATGGTCAT	0.577			NA											27	183					3.65163e-15	5.89227e-15	0.00632	1	0
OR2M7	391196	broad.mit.edu	37	1	248487751	248487751	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:248487751C>A	uc010pzk.1	-	1	120	c.120G>T	c.(118-120)ATG>ATT	p.M40I		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGAGTTTCCCATGAAGGCCA	0.527			NA											79	257					3.12118e-38	5.63757e-38	0.00361	1	0
OR2T34	127068	broad.mit.edu	37	1	248738024	248738024	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:248738024G>A	uc001iep.1	-	1	35	c.35C>T	c.(34-36)ACA>ATA	p.T12I		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGTGCTTGCTGTTTGATTCTG	0.458			NA											5	86					0	0	0.001984	0	0
OR2T11	127077	broad.mit.edu	37	1	248789921	248789921	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:248789921C>A	uc001ier.1	-	1	509	c.509G>T	c.(508-510)AGT>ATT	p.S170I		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	170	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATGGTTGATACTTCGGGAGCC	0.507			NA											18	72					5.35267e-07	6.93323e-07	0.007413	1	0
TUBB8	347688	broad.mit.edu	37	10	94593	94593	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:94593G>A	uc001ifi.2	-	3	239	c.239C>T	c.(238-240)CCC>CTC	p.P80L	TUBB8_uc009xhe.2_Intron|TUBB8_uc010pzs.1_Missense_Mutation_p.P8L	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	80					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		CTGCCCGAAGGGCCCCGAGCG	0.667	Pancreas(192;2041 3010 9013 18103)		NA											31	82					0	0	0.003755	0	0
AKR1C4	1109	broad.mit.edu	37	10	5242256	5242256	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:5242256G>C	uc001ihw.2	+	2	230	c.197G>C	c.(196-198)CGA>CCA	p.R66P		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	66					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	CTGGCCATCCGAAGCAAGATT	0.428			NA											11	116					0	0	0.001368	0	0
ASB13	79754	broad.mit.edu	37	10	5693200	5693200	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:5693200G>A	uc001iig.2	-	3	402	c.358C>T	c.(358-360)CCC>TCC	p.P120S	ASB13_uc001iii.2_Intron|ASB13_uc001iih.2_RNA|ASB13_uc009xic.2_Missense_Mutation_p.P120S	NM_024701	NP_078977	Q8WXK3	ASB13_HUMAN	ankyrin repeat and SOCS box-containing protein	120	ANK 4.				intracellular signal transduction		protein binding			ovary(1)	1				GBM - Glioblastoma multiforme(2;9.59e-09)		TCGTGCAGGGGGGACGCTGTG	0.632			NA											34	98					0	0	0.00623	0	0
SFMBT2	57713	broad.mit.edu	37	10	7269847	7269847	+	Silent	SNP	C	C	A	rs143424241		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:7269847C>A	uc009xio.1	-	10	1264	c.1173G>T	c.(1171-1173)GCG>GCT	p.A391A	SFMBT2_uc001ijn.1_Silent_p.A391A|SFMBT2_uc010qay.1_Silent_p.A391A	NM_001029880	NP_001025051	Q5VUG0	SMBT2_HUMAN	Scm-like with four mbt domains 2	391	MBT 4.				regulation of transcription, DNA-dependent	nucleus				ovary(4)|upper_aerodigestive_tract(2)|large_intestine(1)|central_nervous_system(1)	8						GGGCTTCCTGCGCCCCATGCT	0.428			NA											24	48					1.42536e-11	2.15039e-11	0.004656	1	0
ITIH5	80760	broad.mit.edu	37	10	7684001	7684001	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:7684001C>A	uc001ijq.2	-	3	267	c.188G>T	c.(187-189)CGT>CTT	p.R63L	ITIH5_uc001ijr.1_Missense_Mutation_p.R63L	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	63	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						GAAGGCATAACGGGAAATGAT	0.438			NA											16	63					3.99206e-14	6.30516e-14	0.007413	1	0
ATP5C1	509	broad.mit.edu	37	10	7830195	7830195	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:7830195G>T	uc001iju.2	+	1	103	c.25G>T	c.(25-27)GGG>TGG	p.G9W	KIN_uc010qaz.1_5'Flank|KIN_uc001ijt.2_5'Flank|KIN_uc009xip.2_5'Flank|KIN_uc010qba.1_5'Flank|ATP5C1_uc010qbb.1_Missense_Mutation_p.G9W|ATP5C1_uc009xiq.1_Missense_Mutation_p.G9W|ATP5C1_uc010qbc.1_5'UTR|ATP5C1_uc001ijv.2_Missense_Mutation_p.G9W	NM_001001973	NP_001001973	P36542	ATPG_HUMAN	ATP synthase, H+ transporting, mitochondrial F1	9					oxidative phosphorylation|respiratory electron transport chain	mitochondrial matrix|mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)	hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism				0						GGGTGTCGCTGGGCTGTCGGC	0.682	Melanoma(143;1012 1820 16249 30920 33158)		NA											10	27					6.40141e-05	7.4174e-05	0.010729	1	0
SEC61A2	55176	broad.mit.edu	37	10	12198911	12198911	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:12198911G>C	uc001ile.2	+	8	769	c.622G>C	c.(622-624)GAG>CAG	p.E208Q	SEC61A2_uc010qbq.1_Missense_Mutation_p.E186Q|SEC61A2_uc001ilf.3_RNA|SEC61A2_uc001ilh.3_RNA|SEC61A2_uc001ilg.3_Missense_Mutation_p.E208Q	NM_018144	NP_060614	Q9H9S3	S61A2_HUMAN	Sec61 alpha form 2 isoform a	208	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity			ovary(1)	1		Renal(717;0.228)				TACAGGTACTGAGTTTGAGGG	0.478			NA											13	133					0	0	0.00245	0	0
CAMK1D	57118	broad.mit.edu	37	10	12867623	12867623	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:12867623G>C	uc001ilo.2	+	10	1208	c.973G>C	c.(973-975)GGC>CGC	p.G325R	CAMK1D_uc001iln.2_Missense_Mutation_p.G325R	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	325						calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		ACTACACCTCGGCAGCAGCCT	0.458			NA											22	162					0	0	0.00278	0	0
FAM171A1	221061	broad.mit.edu	37	10	15290733	15290733	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:15290733A>C	uc001iob.2	-	5	666	c.659T>G	c.(658-660)GTG>GGG	p.V220G		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	220	Extracellular (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						GGGACCATCCACCAGCACCGG	0.587			NA											7	65					0	0	0.010729	0	0
SLC39A12	221074	broad.mit.edu	37	10	18292251	18292251	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:18292251T>A	uc001ipo.2	+	12	2184	c.1911T>A	c.(1909-1911)ACT>ACA	p.T637T	SLC39A12_uc001ipn.2_Silent_p.T600T|SLC39A12_uc001ipp.2_Silent_p.T636T|SLC39A12_uc010qck.1_Silent_p.T503T|uc001ipq.1_RNA	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	637	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						TCACAGTCACTGCTGGGATGT	0.373			NA											23	128					0	0	0.00333	0	0
MYO3A	53904	broad.mit.edu	37	10	26457774	26457774	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:26457774G>T	uc001isn.2	+	28	3605	c.3245G>T	c.(3244-3246)AGG>ATG	p.R1082M	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1082	IQ 1.|IQ 2.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						CAGGAGAAAAGGAAAGAAAGC	0.328			NA											16	86					7.21436e-19	1.22269e-18	0.008871	1	0
ANKRD26	22852	broad.mit.edu	37	10	27306526	27306526	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:27306526C>T	uc001ith.2	-	30	4580	c.4408G>A	c.(4408-4410)GAA>AAA	p.E1470K	ANKRD26_uc001itg.2_Missense_Mutation_p.E1157K|ANKRD26_uc009xku.1_Missense_Mutation_p.E1471K	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1470	Potential.					centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TGACCAAGTTCTACCATATTC	0.318			NA											8	100					0	0	0.00308	0	0
ZEB1	6935	broad.mit.edu	37	10	31809433	31809433	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:31809433G>T	uc001ivs.3	+	7	1233	c.1170G>T	c.(1168-1170)ATG>ATT	p.M390I	ZEB1_uc001ivr.3_Missense_Mutation_p.M172I|ZEB1_uc010qee.1_Missense_Mutation_p.M172I|ZEB1_uc010qef.1_Missense_Mutation_p.M172I|ZEB1_uc009xlj.1_Missense_Mutation_p.M316I|ZEB1_uc010qeg.1_Missense_Mutation_p.M249I|ZEB1_uc009xlk.1_Missense_Mutation_p.M172I|ZEB1_uc001ivt.3_Missense_Mutation_p.M172I|ZEB1_uc001ivu.3_Missense_Mutation_p.M391I|ZEB1_uc001ivv.3_Missense_Mutation_p.M370I|ZEB1_uc010qeh.1_Missense_Mutation_p.M323I|ZEB1_uc009xlo.1_Missense_Mutation_p.M373I|ZEB1_uc009xlp.2_Missense_Mutation_p.M374I	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	390					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				CTCAGGGCATGGTGCAAGCTG	0.448	Ovarian(40;423 959 14296 36701 49589)		NA											7	93					0.000274275	0.000304945	0.004482	1	0
ZEB1	6935	broad.mit.edu	37	10	31810851	31810851	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:31810851C>G	uc001ivs.3	+	7	2651	c.2588C>G	c.(2587-2589)CCA>CGA	p.P863R	ZEB1_uc001ivr.3_Missense_Mutation_p.P645R|ZEB1_uc010qee.1_Missense_Mutation_p.P645R|ZEB1_uc010qef.1_Missense_Mutation_p.P645R|ZEB1_uc009xlj.1_Missense_Mutation_p.P789R|ZEB1_uc010qeg.1_Missense_Mutation_p.P722R|ZEB1_uc009xlk.1_Missense_Mutation_p.P645R|ZEB1_uc001ivt.3_Missense_Mutation_p.P645R|ZEB1_uc001ivu.3_Missense_Mutation_p.P864R|ZEB1_uc001ivv.3_Missense_Mutation_p.P843R|ZEB1_uc010qeh.1_Missense_Mutation_p.P796R|ZEB1_uc009xlo.1_Missense_Mutation_p.P846R|ZEB1_uc009xlp.2_Missense_Mutation_p.P847R	NM_030751	NP_110378	P37275	ZEB1_HUMAN	zinc finger E-box binding homeobox 1 isoform b	863					cell proliferation|immune response|negative regulation of transcription from RNA polymerase II promoter|positive regulation of neuron differentiation	cytoplasm	E-box binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(3)|central_nervous_system(2)	5		Prostate(175;0.0156)				GTGATCCAGCCAAATGGAAAT	0.423	Ovarian(40;423 959 14296 36701 49589)		NA											15	46					0	0	0.003163	0	0
C10orf68	79741	broad.mit.edu	37	10	33093962	33093962	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:33093962G>C	uc001iwn.3	+	11	1319	c.846G>C	c.(844-846)TTG>TTC	p.L282F	C10orf68_uc001iwl.1_Intron|C10orf68_uc001iwm.1_Missense_Mutation_p.L258F|C10orf68_uc010qei.1_Missense_Mutation_p.L230F|C10orf68_uc001iwo.3_RNA	NM_024688	NP_078964	Q9H943	CJ068_HUMAN	chromosome 10 open reading frame 68	282										skin(2)|ovary(1)	3						TAGAAAGCTTGAGAGGTGCTT	0.299			NA											17	225					0	0	0.002299	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508354	37508354	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:37508354T>A	uc001iza.1	+	34	3645	c.3546T>A	c.(3544-3546)GAT>GAA	p.D1182E		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1238						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						TGAATGTTGATGTGAGTAGTA	0.368			NA											14	39					0	0	0.001855	0	0
ZNF239	8187	broad.mit.edu	37	10	44053404	44053404	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:44053404T>C	uc001jaw.3	-	2	777	c.124A>G	c.(124-126)AGA>GGA	p.R42G	ZNF239_uc001jax.3_Missense_Mutation_p.R42G|ZNF239_uc009xmj.2_Missense_Mutation_p.R42G|ZNF239_uc009xmk.2_Missense_Mutation_p.R42G	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	42					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						TCCCTGTTTCTGGAAATAGGA	0.423			NA											32	100					0	0	0.003271	0	0
RBP3	5949	broad.mit.edu	37	10	48387913	48387913	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:48387913G>T	uc001jez.2	-	1	3079	c.2965C>A	c.(2965-2967)CTG>ATG	p.L989M		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	989	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	AGCATCTGCAGGTCAGCCCCC	0.612			NA											7	85					3.09899e-07	4.05431e-07	0.004482	1	0
PGBD3	267004	broad.mit.edu	37	10	50724809	50724809	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:50724809C>T	uc001jht.2	-	2	607	c.352G>A	c.(352-354)GAC>AAC	p.D118N	ERCC6_uc001jhs.3_Intron|PGBD3_uc009xoe.2_Missense_Mutation_p.D586N|PGBD3_uc001jhu.2_Missense_Mutation_p.D586N	NM_170753	NP_736609	Q8N328	PGBD3_HUMAN	hypothetical protein LOC267004	118										pancreas(1)|breast(1)|skin(1)	3						ACAGTTAGGTCGGCTTTTTTC	0.423			NA											9	68					0	0	0.004482	0	0
FAM13C	220965	broad.mit.edu	37	10	61014171	61014171	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:61014171C>A	uc001jkn.2	-	12	1403	c.1269G>T	c.(1267-1269)CCG>CCT	p.P423P	FAM13C_uc001jko.2_Silent_p.P325P|FAM13C_uc010qid.1_Silent_p.P340P|FAM13C_uc010qie.1_Silent_p.P340P|FAM13C_uc010qif.1_Silent_p.P445P|FAM13C_uc001jkp.2_Silent_p.P340P	NM_198215	NP_937858	Q8NE31	FA13C_HUMAN	hypothetical protein LOC220965 isoform 1	423										ovary(2)	2						GGTCATAAAGCGGCTTTATGA	0.353			NA											21	96					6.44725e-10	9.24578e-10	0.002299	1	0
CTNNA3	29119	broad.mit.edu	37	10	68979401	68979401	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:68979401C>A	uc009xpn.1	-	6	930	c.807G>T	c.(805-807)CAG>CAT	p.Q269H	CTNNA3_uc001jmw.2_Missense_Mutation_p.Q269H|CTNNA3_uc001jmx.3_Missense_Mutation_p.Q269H|CTNNA3_uc009xpo.1_Missense_Mutation_p.Q129H|CTNNA3_uc001jna.2_Missense_Mutation_p.Q281H	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	269					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GGGTTGCTGCCTGAGGTTCTG	0.413			NA											25	280					1.88708e-17	3.15219e-17	0.008361	1	0
TET1	80312	broad.mit.edu	37	10	70333271	70333271	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:70333271C>A	uc001jok.3	+	2	1681	c.1176C>A	c.(1174-1176)ACC>ACA	p.T392T		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	392					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TGGGTGAGACCCCAGATCTAC	0.502			NA											37	136					5.04308e-16	8.26527e-16	0.00623	1	0
DDX50	79009	broad.mit.edu	37	10	70695825	70695825	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:70695825G>T	uc001jou.2	+	11	1692	c.1585G>T	c.(1585-1587)GAT>TAT	p.D529Y	DDX50_uc010qjc.1_Missense_Mutation_p.D529Y	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	529						nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						TAAAAGCATGGATGCCATCAG	0.323			NA											9	43					3.07112e-06	3.81242e-06	0.010729	1	0
KIAA1274	27143	broad.mit.edu	37	10	72300921	72300921	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:72300921G>A	uc001jrd.3	+	16	2253	c.1972G>A	c.(1972-1974)GTG>ATG	p.V658M	KIAA1274_uc001jre.3_Translation_Start_Site	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	658										ovary(2)|central_nervous_system(1)	3						CACTGGCTTCGTGTTCAGCTG	0.637			NA											13	90					0	0	0.001855	0	0
CDH23	64072	broad.mit.edu	37	10	73464725	73464725	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:73464725G>T	uc001jrx.3	+	24	3168	c.2791G>T	c.(2791-2793)GTG>TTG	p.V931L	CDH23_uc001jry.2_Missense_Mutation_p.V547L|CDH23_uc001jrz.2_Missense_Mutation_p.V547L	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	931	Cadherin 9.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						CCGCATGCCGGTGGGCATGCC	0.672			NA											8	75					5.4927e-09	7.63566e-09	0.004482	1	0
FUT11	170384	broad.mit.edu	37	10	75533499	75533499	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:75533499C>G	uc001jva.2	+	2	1303	c.1260C>G	c.(1258-1260)GCC>GCG	p.A420A	FUT11_uc001juy.1_3'UTR|FUT11_uc001juz.1_Silent_p.A420A	NM_173540	NP_775811	Q495W5	FUT11_HUMAN	fucosyltransferase 11 (alpha (1,3)	420	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity				0	Prostate(51;0.0112)					CCCACATTGCCCAGCCCTCAC	0.607			NA											9	74					0	0	0.006214	0	0
MYST4	23522	broad.mit.edu	37	10	76789167	76789167	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:76789167G>A	uc001jwn.1	+	18	5078	c.4585G>A	c.(4585-4587)GAG>AAG	p.E1529K	MYST4_uc001jwo.1_Missense_Mutation_p.E1237K|MYST4_uc001jwp.1_Missense_Mutation_p.E1346K	NM_012330	NP_036462	Q8WYB5	MYST4_HUMAN	MYST histone acetyltransferase (monocytic	1529					histone H3 acetylation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription factor binding|zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|breast(2)|skin(1)|prostate(1)	16	all_cancers(46;0.0347)|all_epithelial(25;0.00236)|Prostate(51;0.0112)|Ovarian(15;0.0964)					AGAGTTCAAAGAGGGAAACCC	0.537			NA	T	CREBBP	AML								17	76					0	0	0.006122	0	0
NRG3	10718	broad.mit.edu	37	10	83635474	83635474	+	Missense_Mutation	SNP	G	G	T	rs147736439	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:83635474G>T	uc001kco.2	+	1	405	c.378G>T	c.(376-378)GAG>GAT	p.E126D	NRG3_uc010qlz.1_Missense_Mutation_p.E126D|NRG3_uc001kcp.2_5'Flank|NRG3_uc001kcq.2_5'Flank	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	126	Ser/Thr-rich.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AGGCCATGGAGaccaccacca	0.493			NA											9	15					2.17888e-05	2.60269e-05	0.006214	1	0
IFIT1B	439996	broad.mit.edu	37	10	91144225	91144225	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:91144225C>A	uc001kgh.2	+	2	1235	c.1155C>A	c.(1153-1155)GGC>GGA	p.G385G	LIPA_uc001kgb.3_Intron|LIPA_uc001kgc.3_Intron	NM_001010987	NP_001010987	Q5T764	IFT1B_HUMAN	interferon-induced protein with	385	TPR 7.						binding				0						ACCACTACGGCCGTTTCCAAG	0.378			NA											13	41					6.31663e-08	8.44374e-08	0.003163	1	0
LGI1	9211	broad.mit.edu	37	10	95552545	95552545	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:95552545G>T	uc001kjc.3	+	6	885	c.549G>T	c.(547-549)TGG>TGT	p.W183C	LGI1_uc010qnv.1_Missense_Mutation_p.W135C|LGI1_uc001kjd.3_Missense_Mutation_p.W183C|LGI1_uc009xui.2_RNA|LGI1_uc001kje.2_RNA	NM_005097	NP_005088	O95970	LGI1_HUMAN	leucine-rich, glioma inactivated 1 precursor	183	LRRCT.				axon guidance|cell proliferation|positive regulation of cell growth|positive regulation of synaptic transmission	cell junction|extracellular space|synapse	receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4		Colorectal(252;0.124)				AACTGAAATGGCTAGTGGAAT	0.473			NA											9	96					3.09899e-07	4.05431e-07	0.004482	1	0
CC2D2B	387707	broad.mit.edu	37	10	97776052	97776052	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:97776052T>A	uc001kll.2	+	6	702	c.503T>A	c.(502-504)TTG>TAG	p.L168*	uc001klg.1_Intron|uc001klj.1_Intron|CC2D2B_uc001klk.2_Intron|CC2D2B_uc010qop.1_Nonsense_Mutation_p.L168*	NM_001001732	NP_001001732	Q6DHV5	C2D2B_HUMAN	coiled-coil and C2 domain containing 2B isoform	168										ovary(1)	1		Colorectal(252;0.158)		Epithelial(162;7.08e-08)|all cancers(201;2.71e-06)		CTGGTCCTCTTGGGAACGTCA	0.398			NA											8	50					0	0	0.008291	0	0
PPRC1	23082	broad.mit.edu	37	10	103906712	103906712	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:103906712G>C	uc001kum.2	+	9	4002	c.3963G>C	c.(3961-3963)TGG>TGC	p.W1321C	PPRC1_uc001kun.2_Missense_Mutation_p.W1201C|PPRC1_uc010qqj.1_Intron|PPRC1_uc009xxa.2_Intron	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	1321					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GCTCCCGATGGAATGTCAAGC	0.607			NA											4	33					0	0	0.000602	0	0
GBF1	8729	broad.mit.edu	37	10	104123116	104123116	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:104123116A>G	uc001kux.1	+	16	2217	c.1977A>G	c.(1975-1977)TCA>TCG	p.S659S	GBF1_uc001kuy.1_Silent_p.S659S|GBF1_uc001kuz.1_Silent_p.S660S	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	659					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		ATGGGAAATCAGGATGCAGTG	0.597			NA											3	83					0	0	0.004672	0	0
GBF1	8729	broad.mit.edu	37	10	104129046	104129046	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:104129046C>T	uc001kux.1	+	24	3289	c.3049C>T	c.(3049-3051)CAT>TAT	p.H1017Y	GBF1_uc001kuy.1_Missense_Mutation_p.H1017Y|GBF1_uc001kuz.1_Missense_Mutation_p.H1018Y	NM_004193	NP_004184	Q92538	GBF1_HUMAN	golgi-specific brefeldin A resistant guanine	1017					COPI coating of Golgi vesicle|post-Golgi vesicle-mediated transport|regulation of ARF protein signal transduction|retrograde vesicle-mediated transport, Golgi to ER	Golgi membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)|central_nervous_system(1)	2		Colorectal(252;0.0236)		Epithelial(162;5.16e-08)|all cancers(201;1.19e-06)		CCATTTGGCCCATCGTCATGG	0.507			NA											17	114					0	0	0.004007	0	0
TMEM180	79847	broad.mit.edu	37	10	104233400	104233400	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:104233400G>T	uc001kvt.2	+	8	1218	c.999G>T	c.(997-999)GCG>GCT	p.A333A	TMEM180_uc010qql.1_Silent_p.A62A|TMEM180_uc010qqm.1_Silent_p.A182A	NM_024789	NP_079065	Q14CX5	TM180_HUMAN	transmembrane protein 180	333	Helical; (Potential).					integral to membrane				ovary(1)	1		Colorectal(252;0.122)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		GCGTCTACGCGGTGGTGCGGG	0.637			NA											10	87					7.48243e-07	9.59663e-07	0.006214	1	0
NRAP	4892	broad.mit.edu	37	10	115406740	115406740	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:115406740G>T	uc001laj.2	-	10	1099	c.935C>A	c.(934-936)CCA>CAA	p.P312Q	NRAP_uc001lak.2_Missense_Mutation_p.P312Q|NRAP_uc001lal.3_Missense_Mutation_p.P312Q	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	312						fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		GATCATAGCTGGGAAGCTGCC	0.537			NA											10	108					6.40141e-05	7.4174e-05	0.010729	1	0
PPAPDC1A	196051	broad.mit.edu	37	10	122263398	122263398	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:122263398C>A	uc001lev.1	+	2	477	c.125C>A	c.(124-126)CCT>CAT	p.P42H	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.P42H|PPAPDC1A_uc009xzl.1_Missense_Mutation_p.P42H|PPAPDC1A_uc001lew.1_Missense_Mutation_p.P42H|PPAPDC1A_uc001lex.1_Missense_Mutation_p.P42H|PPAPDC1A_uc001ley.1_5'UTR	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	42					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		TATAAAAATCCTTTGGTGCAA	0.383			NA											11	53					0.000673444	0.000734666	0.008291	1	0
ATE1	11101	broad.mit.edu	37	10	123596233	123596233	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:123596233C>T	uc001lfp.2	-	10	1339	c.1257G>A	c.(1255-1257)AAG>AAA	p.K419K	ATE1_uc001lfq.2_Silent_p.K419K|ATE1_uc010qtr.1_Silent_p.K304K|ATE1_uc010qts.1_Silent_p.K323K|ATE1_uc010qtt.1_Silent_p.K412K|ATE1_uc001lfr.2_Silent_p.K120K|ATE1_uc009xzu.2_RNA	NM_007041	NP_008972	O95260	ATE1_HUMAN	arginyltransferase 1 isoform 2	419					protein arginylation	cytoplasm|nucleus	acyltransferase activity|arginyltransferase activity				0		all_neural(114;0.061)|Lung NSC(174;0.095)|all_lung(145;0.124)|Breast(234;0.212)				TCAACTTTACCTTATATTTCA	0.318			NA											13	73					0	0	0.001368	0	0
DMBT1	1755	broad.mit.edu	37	10	124399744	124399744	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:124399744C>A	uc001lgk.1	+	52	6850	c.6744C>A	c.(6742-6744)GTC>GTA	p.V2248V	DMBT1_uc001lgl.1_Silent_p.V2238V|DMBT1_uc001lgm.1_Silent_p.V1620V|DMBT1_uc009xzz.1_Silent_p.V2247V|DMBT1_uc010qtx.1_Silent_p.V968V|DMBT1_uc009yab.1_Silent_p.V951V|DMBT1_uc009yac.1_Silent_p.V542V	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2248	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCGAGGAAGTCCAGTATGGCA	0.473	Ovarian(182;93 2026 18125 22222 38972)		NA											33	128					3.90053e-15	6.28418e-15	0.012213	1	0
MKI67	4288	broad.mit.edu	37	10	129906292	129906292	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr10:129906292C>T	uc001lke.2	-	13	4007	c.3812G>A	c.(3811-3813)AGA>AAA	p.R1271K	MKI67_uc001lkf.2_Missense_Mutation_p.R911K|MKI67_uc009yav.1_Missense_Mutation_p.R846K|MKI67_uc009yaw.1_Missense_Mutation_p.R421K	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	1271	16 X 122 AA approximate repeats.|3.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				CCTGATACTTCTCTTGGGTCG	0.498			NA											14	214					0	0	0.003163	0	0
PHRF1	57661	broad.mit.edu	37	11	607393	607393	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:607393C>T	uc001lqe.2	+	14	2068	c.1937C>T	c.(1936-1938)GCG>GTG	p.A646V	PHRF1_uc010qwc.1_Missense_Mutation_p.A645V|PHRF1_uc010qwd.1_Missense_Mutation_p.A644V|PHRF1_uc010qwe.1_Missense_Mutation_p.A642V|PHRF1_uc009ybz.1_Missense_Mutation_p.A436V|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	646							RNA polymerase binding|zinc ion binding				0						GCCTCTGCCGCGTCTAAGATC	0.587			NA											10	103					0	0	0.006214	0	0
OR52B4	143496	broad.mit.edu	37	11	4389127	4389127	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:4389127C>A	uc010qye.1	-	1	399	c.399G>T	c.(397-399)AGG>AGT	p.R133S		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGGTGGTGTACCTCAGTGGGT	0.403			NA											14	56					6.31663e-08	8.44374e-08	0.003163	1	0
OR52R1	119695	broad.mit.edu	37	11	4825053	4825053	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:4825053A>T	uc010qym.1	-	1	795	c.795T>A	c.(793-795)GCT>GCA	p.A265A		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACTTCAGCACAGCCATGTGCT	0.517			NA											7	89					0	0	0.00308	0	0
OR52A5	390054	broad.mit.edu	37	11	5153245	5153246	+	Silent	DNP	GG	GG	AT			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5153245_5153246GG>AT	uc010qyx.1	-	1	627_628	c.627_628CC>AT	c.(625-630)ATCCTA>ATATTA	p.209_210IL>IL		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	209_210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TCAAACCCTAGGATTGCAAAGG	0.421			NA											26	81					0	0	0.004672	0	0
OR51V1	283111	broad.mit.edu	37	11	5220986	5220986	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5220986G>C	uc010qyz.1	-	1	945	c.945C>G	c.(943-945)CTC>CTG	p.L315L		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	315	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCAGAGAAAAGAGTCTAAGCA	0.343			NA											5	54					0	0	0.001984	0	0
OR51V1	283111	broad.mit.edu	37	11	5221848	5221848	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5221848C>A	uc010qyz.1	-	1	83	c.83G>T	c.(82-84)GGC>GTC	p.G28V		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	28	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTGCTCCATGCCAGAAAATCC	0.448			NA											19	62					5.03518e-11	7.4458e-11	0.007413	1	0
OR51B4	79339	broad.mit.edu	37	11	5322428	5322428	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5322428A>T	uc010qza.1	-	1	749	c.749T>A	c.(748-750)ATC>AAC	p.I250N	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron	NM_033179	NP_149419	Q9Y5P0	O51B4_HUMAN	olfactory receptor, family 51, subfamily B,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATCACAGTGATGTGAAATAC	0.448			NA											12	55					0	0	0.00245	0	0
OR51M1	390059	broad.mit.edu	37	11	5411240	5411240	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5411240C>G	uc010qzc.1	+	1	612	c.612C>G	c.(610-612)ACC>ACG	p.T204T	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	204						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCACAGATATCACCTTCAATA	0.502			NA											7	112					0	0	0.001984	0	0
OR51I1	390063	broad.mit.edu	37	11	5462321	5462321	+	Missense_Mutation	SNP	G	G	T	rs141201376		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5462321G>T	uc010qze.1	-	1	424	c.424C>A	c.(424-426)CGT>AGT	p.R142S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	142	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCCAATATACGGTTGTGAGTG	0.478			NA											9	62					2.74318e-10	3.98314e-10	0.006214	1	0
OR52N4	390072	broad.mit.edu	37	11	5776426	5776426	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5776426G>C	uc001mbu.2	+	1	504	c.456G>C	c.(454-456)CTG>CTC	p.L152L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		CCACCTTCCTGAGAGGGGTAT	0.488			NA											32	110					0	0	0.009535	0	0
OR52N1	79473	broad.mit.edu	37	11	5809676	5809676	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5809676T>A	uc010qzo.1	-	1	371	c.371A>T	c.(370-372)CAC>CTC	p.H124L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001913	NP_001001913	Q8NH53	O52N1_HUMAN	olfactory receptor, family 52, subfamily N,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		GGCCACACAGTGGTCCAGGGC	0.512			NA											6	106					0	0	0.001168	0	0
OR52E6	390078	broad.mit.edu	37	11	5862468	5862468	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5862468G>T	uc010qzq.1	-	1	660	c.660C>A	c.(658-660)ATC>ATA	p.I220I	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGAGGATCCTGATATGGGAGA	0.468			NA											5	56					0.000602214	0.000659027	0.000602	1	0
OR52E4	390081	broad.mit.edu	37	11	5905568	5905568	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:5905568C>T	uc010qzs.1	+	1	46	c.46C>T	c.(46-48)CTG>TTG	p.L16L	TRIM5_uc001mbq.1_Intron	NM_001005165	NP_001005165	Q8NGH9	O52E4_HUMAN	olfactory receptor, family 52, subfamily E,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.24e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CTTCTTCCTCCTGCTAGGAAT	0.428			NA											48	182					0	0	0.00361	0	0
OR56A4	120793	broad.mit.edu	37	11	6024334	6024334	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:6024334G>A	uc010qzv.1	-	1	45	c.45C>T	c.(43-45)GGC>GGT	p.G15G		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	Error:Variant_position_missing_in_Q8NGH8_after_alignment					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCCACTGAGGCCCTGTATCT	0.303			NA											11	45					0	0	0.001368	0	0
CCKBR	887	broad.mit.edu	37	11	6291464	6291464	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:6291464C>A	uc001mcp.2	+	3	743	c.550C>A	c.(550-552)CTA>ATA	p.L184I	CCKBR_uc001mcq.2_Missense_Mutation_p.L112I|CCKBR_uc001mcr.2_Missense_Mutation_p.L184I|CCKBR_uc001mcs.2_Missense_Mutation_p.L184I|CCKBR_uc001mct.1_5'Flank	NM_176875	NP_795344	P32239	GASR_HUMAN	cholecystokinin B receptor	184	Helical; Name=4; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|cell proliferation|digestion|elevation of cytosolic calcium ion concentration|feeding behavior|positive regulation of cell proliferation|sensory perception		1-phosphatidylinositol-3-kinase regulator activity|gastrin receptor activity|phosphatidylinositol phospholipase C activity|type B gastrin/cholecystokinin receptor binding			lung(5)|ovary(2)|breast(1)	8		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.139)	Pentagastrin(DB00183)	GCTGTCCGGACTACTCATGGT	0.672			NA											4	49					0.00116845	0.00126673	0.001168	1	0
OR10A2	341276	broad.mit.edu	37	11	6891129	6891129	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:6891129C>T	uc001meu.1	+	1	144	c.144C>T	c.(142-144)TTC>TTT	p.F48F		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	48	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		CCATGTACTTCTTCCTCAGAA	0.498			NA											16	191					0	0	0.004007	0	0
OR2D2	120776	broad.mit.edu	37	11	6913519	6913519	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:6913519G>A	uc010rau.1	-	1	213	c.213C>T	c.(211-213)CTC>CTT	p.L71L		NM_003700	NP_003691	Q9H210	OR2D2_HUMAN	olfactory receptor, family 2, subfamily D,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TAGAGAAACAGAGGTCAGCCA	0.453			NA											13	48					0	0	0.001368	0	0
RNF141	50862	broad.mit.edu	37	11	10540598	10540598	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:10540598C>T	uc001mis.1	-	5	678	c.525G>A	c.(523-525)CAG>CAA	p.Q175Q	RNF141_uc009yga.1_RNA|RNF141_uc001mit.1_Silent_p.Q175Q	NM_016422	NP_057506	Q8WVD5	RN141_HUMAN	ring finger protein 141	175	RING-type.						zinc ion binding				0				all cancers(16;4.63e-08)|Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.064)		CAATACACTTCTGACAAAAGC	0.463	Ovarian(8;377 410 25844 26058 41491)		NA											3	60					0	0	0.004672	0	0
MICAL2	9645	broad.mit.edu	37	11	12265624	12265624	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:12265624C>G	uc001mjz.2	+	21	3037	c.2749C>G	c.(2749-2751)CCA>GCA	p.P917A	MICAL2_uc010rch.1_Intron|MICAL2_uc001mka.2_Missense_Mutation_p.P917A|MICAL2_uc010rci.1_Missense_Mutation_p.P917A|MICAL2_uc001mkb.2_Intron|MICAL2_uc001mkc.2_Intron|MICAL2_uc001mkd.2_Intron|MICAL2_uc010rcj.1_Intron|MICAL2_uc001mkf.2_RNA	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	917						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		TTCTTCCTCTCCATCAACTGT	0.488			NA											40	232					0	0	0.013114	0	0
MICALCL	84953	broad.mit.edu	37	11	12315660	12315660	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:12315660C>T	uc001mkg.1	+	3	973	c.682C>T	c.(682-684)CGC>TGC	p.R228C		NM_032867	NP_116256	Q6ZW33	MICLK_HUMAN	MICAL C-terminal like	228					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	mitogen-activated protein kinase binding			skin(1)	1				Epithelial(150;0.00177)		AAAACCAGTCCGCCCCCTGCT	0.607			NA											4	66					0	0	0.009096	0	0
RPS13	6207	broad.mit.edu	37	11	17097027	17097027	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:17097027G>A	uc001mmp.2	-	4	327	c.295C>T	c.(295-297)CGA>TGA	p.R99*		NM_001017	NP_001008	P62277	RS13_HUMAN	ribosomal protein S13	99					endocrine pancreas development|negative regulation of RNA splicing|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	mRNA binding|protein binding|structural constituent of ribosome				0						AGATGCTTTCGAACAGCAACT	0.353			NA											10	43					0	0	0.010729	0	0
PTPN5	84867	broad.mit.edu	37	11	18762209	18762209	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:18762209G>T	uc001mpd.2	-	8	1287	c.856C>A	c.(856-858)CAA>AAA	p.Q286K	PTPN5_uc001mpb.2_Missense_Mutation_p.Q254K|PTPN5_uc001mpc.2_Missense_Mutation_p.Q286K|PTPN5_uc001mpe.2_Missense_Mutation_p.Q254K|PTPN5_uc010rdj.1_Missense_Mutation_p.Q230K|PTPN5_uc001mpf.2_Missense_Mutation_p.Q262K|PTPN5_uc010rdk.1_Missense_Mutation_p.Q231K	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	286						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TCTTCTGCTTGGAGGACACGG	0.612			NA											4	59					3.59834e-05	4.21623e-05	0.001168	1	0
SLC5A12	159963	broad.mit.edu	37	11	26702709	26702709	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:26702709G>T	uc001mra.2	-	12	1681	c.1368C>A	c.(1366-1368)GCC>GCA	p.A456A	SLC5A12_uc001mrb.2_RNA	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	456	Helical; (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						GGTAAATGAAGGCCCCAATGG	0.463			NA											12	31					3.07112e-06	3.81242e-06	0.010729	1	0
MPPED2	744	broad.mit.edu	37	11	30433061	30433061	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:30433061G>T	uc001msr.2	-	6	959	c.839C>A	c.(838-840)ACC>AAC	p.T280N	MPPED2_uc001msq.3_Intron|MPPED2_uc009yji.2_Missense_Mutation_p.T154N	NM_001584	NP_001575	Q15777	MPPD2_HUMAN	metallophosphoesterase domain containing 2	280					nervous system development		hydrolase activity|metal ion binding			skin(1)	1						TGGAGGGTTGGTCGGTTGAAA	0.468			NA											12	40					9.31168e-06	1.13435e-05	0.001855	1	0
ELP4	26610	broad.mit.edu	37	11	31531341	31531341	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:31531341G>C	uc001mtb.2	+	1	45	c.10G>C	c.(10-12)GTG>CTG	p.V4L	IMMP1L_uc001msy.1_5'Flank|IMMP1L_uc001msz.1_5'Flank|ELP4_uc001mta.1_RNA|ELP4_uc001mtc.2_Missense_Mutation_p.V4L|ELP4_uc010rdz.1_Missense_Mutation_p.V4L|IMMP1L_uc009yjo.2_5'Flank|IMMP1L_uc009yjp.2_5'Flank	NM_019040	NP_061913	Q96EB1	ELP4_HUMAN	elongation protein 4 homolog	4					histone acetylation|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|Elongator holoenzyme complex|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|prostate(1)	3	Lung SC(675;0.225)					GATGGCGGCAGTGGCAACCTG	0.592			NA											3	54					0	0	0.004672	0	0
PAMR1	25891	broad.mit.edu	37	11	35454105	35454105	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:35454105G>T	uc001mwg.2	-	11	2005	c.1962C>A	c.(1960-1962)CCC>CCA	p.P654P	PAMR1_uc001mwf.2_Silent_p.P671P|PAMR1_uc010rew.1_Silent_p.P543P|PAMR1_uc010rex.1_Silent_p.P614P	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	654	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						AAGGGGCAGTGGGTTCCCAGC	0.587			NA											8	36					0.00307968	0.00330101	0.00308	1	0
ACCS	84680	broad.mit.edu	37	11	44105128	44105128	+	Splice_Site	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:44105128G>T	uc009yks.1	+	14	1552	c.1408_splice	c.e14+1	p.G470_splice	EXT2_uc010rfo.1_Intron|ACCS_uc001mxx.2_Splice_Site_p.G470_splice	NM_001127219	NP_001120691	Q96QU6	1A1L1_HUMAN	1-aminocyclopropane-1-carboxylate synthase								1-aminocyclopropane-1-carboxylate synthase activity|protein homodimerization activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups			breast(2)|ovary(1)|lung(1)	4						CTTTGCCTGGGTGAGCAGCCT	0.587	Esophageal Squamous(158;148 1889 8077 23160 41213)		NA											6	68					3.59834e-05	4.21623e-05	0.001168	1	0
TP53I11	9537	broad.mit.edu	37	11	44959781	44959781	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:44959781C>A	uc001myi.2	-	5	711	c.106G>T	c.(106-108)GAC>TAC	p.D36Y	TP53I11_uc001myf.1_RNA|TP53I11_uc001myj.2_Missense_Mutation_p.D36Y|TP53I11_uc001myk.2_Missense_Mutation_p.D36Y|TP53I11_uc001myl.2_Missense_Mutation_p.D36Y|TP53I11_uc001mym.2_Silent_p.T2T	NM_006034	NP_006025	O14683	P5I11_HUMAN	p53-induced protein	36	Cytoplasmic (Potential).				negative regulation of cell proliferation|response to stress	integral to membrane				ovary(1)	1						ACCTCCCCGTCGTCATCCTCC	0.677			NA											4	14					1.024e-07	1.36533e-07	0.000602	1	0
FNBP4	23360	broad.mit.edu	37	11	47746181	47746181	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:47746181C>T	uc009ylv.2	-	13	2311	c.2158G>A	c.(2158-2160)GAA>AAA	p.E720K	FNBP4_uc001ngi.2_Missense_Mutation_p.E34K|FNBP4_uc001ngj.2_Missense_Mutation_p.E627K|FNBP4_uc001ngl.2_RNA	NM_015308	NP_056123	Q8N3X1	FNBP4_HUMAN	formin binding protein 4	720	Pro-rich.									ovary(1)	1						ggaggtgattctggaggtgga	0.418			NA											6	75					0	0	0.001168	0	0
OR4A16	81327	broad.mit.edu	37	11	55111056	55111056	+	Missense_Mutation	SNP	C	C	A	rs144905099	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:55111056C>A	uc010rie.1	+	1	380	c.380C>A	c.(379-381)CCG>CAG	p.P127Q		NM_001005274	NP_001005274	Q8NH70	O4A16_HUMAN	olfactory receptor, family 4, subfamily A,	127	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(2)|pancreas(1)	3						ATCTCTAAGCCGCTGCACTAT	0.468			NA											24	171					2.44723e-14	3.88284e-14	0.004656	1	0
OR5I1	10798	broad.mit.edu	37	11	55703186	55703186	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:55703186G>T	uc010ris.1	-	1	691	c.691C>A	c.(691-693)CGC>AGC	p.R231S		NM_006637	NP_006628	Q13606	OR5I1_HUMAN	olfactory receptor, family 5, subfamily I,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTGAAAGAGCGGATCTTTAAG	0.453			NA											8	12					0.000274275	0.000304945	0.004482	1	0
OR6Q1	219952	broad.mit.edu	37	11	57799360	57799360	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:57799360C>G	uc010rjz.1	+	1	936	c.936C>G	c.(934-936)AAC>AAG	p.N312K	OR9Q1_uc001nmj.2_Intron	NM_001005186	NP_001005186	Q8NGQ2	OR6Q1_HUMAN	olfactory receptor, family 6, subfamily Q,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(1)	1		Breast(21;0.0707)|all_epithelial(135;0.142)				TTTCTCTCAACTTTTGGAAGG	0.408			NA											6	74					0	0	0.001168	0	0
OR5B21	219968	broad.mit.edu	37	11	58275424	58275424	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:58275424T>C	uc010rki.1	-	1	155	c.155A>G	c.(154-156)CAT>CGT	p.H52R		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AGTGTGGAGATGGGAGTCTGA	0.498			NA											16	87					0	0	0.003163	0	0
OR4D6	219983	broad.mit.edu	37	11	59224956	59224956	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:59224956G>A	uc010rku.1	+	1	523	c.523G>A	c.(523-525)GAT>AAT	p.D175N		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CAACACACTGGATGCCTTCTA	0.507			NA											34	152					0	0	0.010818	0	0
MS4A14	84689	broad.mit.edu	37	11	60165337	60165337	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:60165337C>A	uc001npj.2	+	2	716	c.151C>A	c.(151-153)CTG>ATG	p.L51M	MS4A14_uc001npi.2_Intron|MS4A14_uc001npn.2_Translation_Start_Site|MS4A14_uc001npk.2_Missense_Mutation_p.L51M|MS4A14_uc001npl.2_Translation_Start_Site|MS4A14_uc001npm.2_Translation_Start_Site	NM_032597	NP_115986	Q96JA4	M4A14_HUMAN	membrane-spanning 4-domains, subfamily A, member	51	Helical; (Potential).					integral to membrane	receptor activity			breast(1)	1						TACCCAGATCCTGCTTGCTCT	0.448			NA											14	61					0.000219431	0.000247661	0.00245	1	0
AHNAK	79026	broad.mit.edu	37	11	62288697	62288697	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:62288697T>A	uc001ntl.2	-	5	13492	c.13192A>T	c.(13192-13194)AAA>TAA	p.K4398*	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	4398					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				CCTTTCACTTTGGGACCCTTC	0.468			NA											42	284					0	0	0.009718	0	0
TUT1	64852	broad.mit.edu	37	11	62346149	62346149	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:62346149G>A	uc001nto.2	-	5	1196	c.1158C>T	c.(1156-1158)CTC>CTT	p.L386L	TUT1_uc001ntp.1_5'Flank	NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	348					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						CACAGCCCCGGAGAATGGATC	0.622			NA											9	99					0	0	0.004482	0	0
TUT1	64852	broad.mit.edu	37	11	62348608	62348608	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:62348608G>A	uc001nto.2	-	4	812	c.774C>T	c.(772-774)TTC>TTT	p.F258F		NM_022830	NP_073741	Q9H6E5	STPAP_HUMAN	terminal uridylyl transferase 1, U6	220					mRNA cleavage|mRNA polyadenylation|snRNA processing	nuclear speck|nucleolus	ATP binding|enzyme binding|mRNA 3'-UTR binding|polynucleotide adenylyltransferase activity|RNA uridylyltransferase activity|zinc ion binding			central_nervous_system(1)|skin(1)	2						CCAGATCCAAGAAGAGGTCAA	0.468			NA											5	120					0	0	0.000602	0	0
ZBTB3	79842	broad.mit.edu	37	11	62519813	62519813	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:62519813T>C	uc001nuz.2	-	2	1596	c.1474A>G	c.(1474-1476)ACG>GCG	p.T492A		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	492	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						GTGTGCACCGTGGCATGTCGC	0.567			NA											7	50					0	0	0.00308	0	0
WDR74	54663	broad.mit.edu	37	11	62603205	62603205	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:62603205G>C	uc001nvm.1	-	6	646	c.478C>G	c.(478-480)CTG>GTG	p.L160V	WDR74_uc001nvk.1_Missense_Mutation_p.L103V|WDR74_uc001nvl.1_Missense_Mutation_p.L160V|WDR74_uc001nvn.1_Missense_Mutation_p.L212V|WDR74_uc009yoi.1_Missense_Mutation_p.L160V|WDR74_uc010rmk.1_Missense_Mutation_p.L160V	NM_018093	NP_060563	Q6RFH5	WDR74_HUMAN	WD repeat domain 74	160	WD 3.					nucleolus				ovary(1)	1						GAGCCCTGCAGGTCCCATATC	0.572			NA											3	29					0	0	0.004672	0	0
WDR74	54663	broad.mit.edu	37	11	62606600	62606600	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:62606600G>A	uc001nvm.1	-	4	447	c.279C>T	c.(277-279)CTC>CTT	p.L93L	WDR74_uc001nvk.1_Silent_p.L36L|WDR74_uc001nvl.1_Silent_p.L93L|WDR74_uc001nvn.1_Silent_p.L145L|WDR74_uc009yoi.1_Silent_p.L93L|WDR74_uc010rmk.1_Silent_p.L93L	NM_018093	NP_060563	Q6RFH5	WDR74_HUMAN	WD repeat domain 74	93	WD 2.					nucleolus				ovary(1)	1						CGGCCTGGGCGAGGCCACGGA	0.622			NA											4	60					0	0	0.000602	0	0
TSGA10IP	254187	broad.mit.edu	37	11	65721189	65721189	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:65721189C>G	uc001ogk.1	+	7	1335	c.1303C>G	c.(1303-1305)CGC>GGC	p.R435G	TSGA10IP_uc009yqw.1_RNA|TSGA10IP_uc009yqx.1_RNA	NM_152762	NP_689975	Q3SY00	T10IP_HUMAN	testis specific, 10 interacting protein	435	Potential.										0						GGCGGCCCAGCGCAAGCTGGA	0.711			NA											7	24					0	0	0.00308	0	0
B3GNT1	11041	broad.mit.edu	37	11	66114003	66114003	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:66114003G>A	uc001ohr.2	-	1	1159	c.1014C>T	c.(1012-1014)TTC>TTT	p.F338F	BRMS1_uc001ohp.1_5'Flank|BRMS1_uc001oho.1_5'Flank	NM_006876	NP_006867	O43505	B3GN1_HUMAN	UDP-GlcNAc:betaGal	338	Lumenal (Potential).				poly-N-acetyllactosamine biosynthetic process	integral to Golgi membrane	N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase activity				0						AGCGCTCGTCGAAGGTGGGCA	0.632			NA											5	84					0	0	0.000602	0	0
PELI3	246330	broad.mit.edu	37	11	66235598	66235598	+	Splice_Site	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:66235598G>A	uc001oic.3	+	2	164	c.0_splice	c.e2-1		PELI3_uc001oib.2_Splice_Site|PELI3_uc001oid.3_Splice_Site|PELI3_uc001oie.3_Splice_Site	NM_145065	NP_659502	Q8N2H9	PELI3_HUMAN	pellino 3 alpha isoform 1							cytosol	protein binding			ovary(1)	1						ACTCTGCCCAGAATGGTGCTG	0.617			NA											3	41					0	0	0.004672	0	0
SHANK2	22941	broad.mit.edu	37	11	70319477	70319477	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:70319477C>A	uc001oqc.2	-	22	5125	c.5047G>T	c.(5047-5049)GGC>TGC	p.G1683C	SHANK2_uc010rqn.1_Missense_Mutation_p.G1095C|SHANK2_uc001opz.2_Missense_Mutation_p.G1088C|uc009ysn.1_Intron|SHANK2_uc001opy.2_Missense_Mutation_p.G19C	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1304					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TGGGAGGTGCCGGGGCGAACA	0.592			NA											5	55					8.12818e-05	9.32508e-05	0.001984	1	0
SHANK2	22941	broad.mit.edu	37	11	70507709	70507709	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:70507709C>A	uc001oqc.2	-	13	2006	c.1928G>T	c.(1927-1929)GGG>GTG	p.G643V	SHANK2_uc010rqn.1_Missense_Mutation_p.G55V|SHANK2_uc001opz.2_Missense_Mutation_p.G55V|uc009ysn.1_Intron|SHANK2_uc010rqp.1_Missense_Mutation_p.G55V	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	264	PDZ.				intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACCTTTGGCCCCTCGAAGCAC	0.373			NA											33	163					0.000109025	0.000124532	0.003755	1	0
PAAF1	80227	broad.mit.edu	37	11	73620586	73620586	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:73620586G>T	uc001ouk.1	+	7	709	c.675G>T	c.(673-675)GCG>GCT	p.A225A	PAAF1_uc001oul.1_Silent_p.A208A|PAAF1_uc009ytx.1_RNA|PAAF1_uc001oum.1_Silent_p.A208A	NM_025155	NP_079431	Q9BRP4	PAAF1_HUMAN	proteasomal ATPase-associated factor 1	225					interspecies interaction between organisms	proteasome complex	protein binding			ovary(1)|skin(1)	2	Breast(11;7.42e-05)					ATGGAGTGGCGGTGGGTGCTG	0.502			NA											5	85					3.59834e-05	4.21623e-05	0.001168	1	0
PGM2L1	283209	broad.mit.edu	37	11	74053997	74053997	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:74053997C>T	uc001ovb.1	-	11	1671	c.1375G>A	c.(1375-1377)GAG>AAG	p.E459K		NM_173582	NP_775853	Q6PCE3	PGM2L_HUMAN	phosphoglucomutase 2-like 1	459					glucose 1-phosphate metabolic process	cytosol	glucose-1,6-bisphosphate synthase activity|phosphoglucomutase activity			ovary(1)	1	Breast(11;3.32e-06)					GATGCCATCTCAGCAACCACA	0.378			NA											13	148					0	0	0.00245	0	0
C11orf30	56946	broad.mit.edu	37	11	76248926	76248926	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:76248926G>C	uc001oxl.2	+	16	2590	c.2447G>C	c.(2446-2448)AGA>ACA	p.R816T	C11orf30_uc001oxm.2_Missense_Mutation_p.R732T|C11orf30_uc010rsb.1_Missense_Mutation_p.R831T|C11orf30_uc010rsc.1_Missense_Mutation_p.R831T|C11orf30_uc001oxn.2_Missense_Mutation_p.R817T|C11orf30_uc010rsd.1_Intron|C11orf30_uc001oxo.1_Missense_Mutation_p.R184T|C11orf30_uc010rse.1_Intron	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	816					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						CAGGAAAAGAGACATTCTCCT	0.398			NA											3	54					0	0	0.004672	0	0
LRRC32	2615	broad.mit.edu	37	11	76372213	76372213	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:76372213C>A	uc001oxq.3	-	3	667	c.424G>T	c.(424-426)GAG>TAG	p.E142*	LRRC32_uc001oxr.3_Nonsense_Mutation_p.E142*|LRRC32_uc010rsf.1_Nonsense_Mutation_p.E142*	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	142	Extracellular (Potential).|LRR 4.					integral to plasma membrane					0						AGCAGCCGCTCCAGCAGGCCG	0.687			NA											8	31					0.000442599	0.000490004	0.006214	1	0
ODZ4	26011	broad.mit.edu	37	11	78412999	78412999	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:78412999G>T	uc001ozl.3	-	28	5122	c.4659C>A	c.(4657-4659)GCC>GCA	p.A1553A	ODZ4_uc009yvb.1_Silent_p.A137A	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1553	NHL 5.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						TCCCAAGGTCGGCCACGTAGA	0.483			NA											9	56					1.12685e-05	1.36319e-05	0.004482	1	0
PRCP	5547	broad.mit.edu	37	11	82571045	82571045	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:82571045C>A	uc001ozs.2	-	2	396	c.283G>T	c.(283-285)GAC>TAC	p.D95Y	PRCP_uc001ozr.2_Missense_Mutation_p.D116Y	NM_005040	NP_005031	P42785	PCP_HUMAN	prolylcarboxypeptidase isoform 1 preproprotein	95					blood coagulation, intrinsic pathway|proteolysis	lysosome|plasma membrane	protein binding|serine-type carboxypeptidase activity			skin(1)	1						CAGATAATGTCCCCTTCATTA	0.299			NA											6	41					0.00198382	0.00214179	0.001984	1	0
PCF11	51585	broad.mit.edu	37	11	82880813	82880813	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:82880813C>G	uc001ozx.3	+	8	3781	c.3436C>G	c.(3436-3438)CCA>GCA	p.P1146A	PCF11_uc010rsu.1_Missense_Mutation_p.P1277A	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	1146					mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						TTTTAATGCCCCATCCCAAGG	0.413			NA											10	38					0	0	0.006214	0	0
TRIM49	57093	broad.mit.edu	37	11	89537597	89537597	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:89537597A>T	uc001pdb.2	-	3	370	c.41T>A	c.(40-42)ATC>AAC	p.I14N		NM_020358	NP_065091	P0CI25	TRI49_HUMAN	ring finger protein 18	14						intracellular	zinc ion binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CAGGGGGCAGATGAGTTCCCC	0.473			NA											7	61					0	0	0.010729	0	0
NAALAD2	10003	broad.mit.edu	37	11	89885563	89885563	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:89885563G>T	uc001pdf.3	+	6	816	c.707G>T	c.(706-708)TGG>TTG	p.W236L	NAALAD2_uc009yvx.2_Missense_Mutation_p.W236L|NAALAD2_uc009yvy.2_Missense_Mutation_p.W236L|NAALAD2_uc001pdd.2_Missense_Mutation_p.W236L|NAALAD2_uc001pde.2_Missense_Mutation_p.W236L	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	236	Extracellular (Potential).				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				CCCAAAGGATGGAATCTTCCT	0.468			NA											16	61					2.31682e-05	2.75172e-05	0.003163	1	0
FAT3	120114	broad.mit.edu	37	11	92495149	92495149	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:92495149G>A	uc001pdj.3	+	4	3814	c.3797G>A	c.(3796-3798)CGT>CAT	p.R1266H		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1266	Cadherin 12.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CTGCCAGAACGTGACCGAAAG	0.473			NA								TCGA Ovarian(4;0.039)			30	212					0	0	0.008361	0	0
CNTN5	53942	broad.mit.edu	37	11	99932105	99932105	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:99932105G>T	uc001pga.2	+	10	1481	c.1142G>T	c.(1141-1143)CGT>CTT	p.R381L	CNTN5_uc009ywv.1_Missense_Mutation_p.R381L|CNTN5_uc001pfz.2_Missense_Mutation_p.R381L|CNTN5_uc001pgb.2_Missense_Mutation_p.R307L	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	381	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AATTCCTTTCGTGGACAATTA	0.393			NA											3	50					0.00024832	0.000277565	0.009096	1	0
MMP13	4322	broad.mit.edu	37	11	102820906	102820906	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:102820906A>G	uc001phl.2	-	6	878	c.850T>C	c.(850-852)TGT>CGT	p.C284R		NM_002427	NP_002418	P45452	MMP13_HUMAN	matrix metalloproteinase 13 preproprotein	284					collagen catabolic process|proteolysis	extracellular space	metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3		all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)		BRCA - Breast invasive adenocarcinoma(274;0.0144)		GAAGGGTCACATTTGTCTGGC	0.423			NA											15	257					0	0	0.00499	0	0
EXPH5	23086	broad.mit.edu	37	11	108380887	108380887	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:108380887G>A	uc001pkk.2	-	6	5458	c.5347C>T	c.(5347-5349)CTG>TTG	p.L1783L	EXPH5_uc010rvy.1_Silent_p.L1595L|EXPH5_uc010rvz.1_Silent_p.L1627L|EXPH5_uc010rwa.1_Silent_p.L1707L	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1783					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TCCCACTCCAGAGATGAAGCA	0.478			NA											7	146					0	0	0.00308	0	0
BACE1	23621	broad.mit.edu	37	11	117163902	117163902	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:117163902G>C	uc001pqz.2	-	5	1169	c.708C>G	c.(706-708)ATC>ATG	p.I236M	BACE1_uc001pqw.2_Missense_Mutation_p.I211M|BACE1_uc001pqx.2_Missense_Mutation_p.I167M|BACE1_uc001pqy.2_Missense_Mutation_p.I192M|BACE1_uc010rxg.1_Missense_Mutation_p.I111M|BACE1_uc010rxh.1_Missense_Mutation_p.I136M|BACE1_uc009yzo.1_5'Flank	NM_012104	NP_036236	P56817	BACE1_HUMAN	beta-site APP-cleaving enzyme 1 isoform A	236	Extracellular (Potential).				beta-amyloid metabolic process|membrane protein ectodomain proteolysis	cell surface|cytoplasmic vesicle membrane|endoplasmic reticulum|endosome|integral to plasma membrane|trans-Golgi network	aspartic-type endopeptidase activity|beta-aspartyl-peptidase activity|protein binding			ovary(1)	1	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000563)|all cancers(92;0.0032)		TACCTCCAATGATCTAGGGAA	0.522			NA											5	110					0	0	0.001168	0	0
HMBS	3145	broad.mit.edu	37	11	118959797	118959797	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:118959797A>G	uc001puz.1	+	4	323	c.166A>G	c.(166-168)ATG>GTG	p.M56V	HMBS_uc009zao.1_Missense_Mutation_p.M1V|HMBS_uc001pvc.1_Missense_Mutation_p.M1V|HMBS_uc009zap.1_Missense_Mutation_p.M39V|HMBS_uc001pva.1_Missense_Mutation_p.M56V|HMBS_uc001pvb.1_Missense_Mutation_p.M38V|HMBS_uc001pvd.1_Missense_Mutation_p.M39V|HMBS_uc001pve.1_Missense_Mutation_p.M39V|HMBS_uc001pvf.1_Missense_Mutation_p.M39V	NM_000190	NP_000181	P08397	HEM3_HUMAN	hydroxymethylbilane synthase isoform 1	56					peptidyl-pyrromethane cofactor linkage	cytosol	hydroxymethylbilane synthase activity				0	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.72e-05)		CTCAGTTGCTATGTCCACCAC	0.323			NA							Porphyria_Acute_Intermittent				34	109					0	0	0.003755	0	0
C11orf63	79864	broad.mit.edu	37	11	122805659	122805659	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:122805659G>T	uc001pym.2	+	5	1807	c.1510G>T	c.(1510-1512)GTG>TTG	p.V504L		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	504										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		TAAGAGACACGTGCTCCTGAG	0.378			NA											25	90					2.41591e-17	4.02909e-17	0.004656	1	0
OR10G4	390264	broad.mit.edu	37	11	123887059	123887059	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:123887059A>G	uc010sac.1	+	1	778	c.778A>G	c.(778-780)AGG>GGG	p.R260G		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	260	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		CATTTATCTGAGGCCAGGCTC	0.527			NA											8	72					0	0	0.00308	0	0
OR10G9	219870	broad.mit.edu	37	11	123893753	123893753	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:123893753C>A	uc010sad.1	+	1	34	c.34C>A	c.(34-36)CTC>ATC	p.L12I		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		AGCGTTCATCCTCACGGGCCT	0.552			NA											24	145					7.92952e-12	1.19977e-11	0.003954	1	0
FLI1	2313	broad.mit.edu	37	11	128642833	128642833	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr11:128642833T>G	uc010sbu.1	+	4	883	c.542T>G	c.(541-543)CTC>CGC	p.L181R	FLI1_uc010sbt.1_Intron|FLI1_uc010sbv.1_Missense_Mutation_p.L148R|FLI1_uc009zci.2_Missense_Mutation_p.L115R	NM_002017	NP_002008	Q01543	FLI1_HUMAN	Friend leukemia virus integration 1	181	PNT.				hemostasis|organ morphogenesis	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		EWSR1/FLI1(2266)	bone(2210)|soft_tissue(48)|autonomic_ganglia(4)|central_nervous_system(4)|lung(3)|ovary(2)|pancreas(2)	2273	all_hematologic(175;0.0641)	Lung NSC(97;0.00588)|all_lung(97;0.00764)|Breast(109;0.0115)|Medulloblastoma(222;0.0523)|all_neural(223;0.0862)|all_hematologic(192;0.182)		OV - Ovarian serous cystadenocarcinoma(99;0.01)|LUSC - Lung squamous cell carcinoma(976;0.0324)|Lung(977;0.0327)		GCCACCACCCTCTACAACACG	0.527			NA	T	EWSR1	Ewing sarcoma								40	138					0	0	0.00361	0	0
CHD4	1108	broad.mit.edu	37	12	6709529	6709529	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:6709529C>G	uc001qpo.2	-	9	1260	c.1096G>C	c.(1096-1098)GAG>CAG	p.E366Q	CHD4_uc001qpn.2_Missense_Mutation_p.E359Q|CHD4_uc001qpp.2_Missense_Mutation_p.E363Q	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	366					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						TGGTCTGTCTCATAACCATCC	0.567	Colon(32;586 792 4568 16848 45314)		NA											5	69					0	0	0.00308	0	0
PEX5	5830	broad.mit.edu	37	12	7361763	7361763	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:7361763C>T	uc009zfu.1	+	15	2137	c.1557C>T	c.(1555-1557)CCC>CCT	p.P519P	PEX5_uc001qsw.2_Silent_p.P519P|PEX5_uc010sgc.1_Silent_p.P534P|PEX5_uc001qsu.2_Silent_p.P482P|PEX5_uc010sgd.1_Silent_p.P540P|PEX5_uc001qsv.2_Silent_p.P511P	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	519	TPR 5.				protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						GCGTTCGTCCCAATGTGAGCC	0.453			NA											24	36					0	0	0.00333	0	0
FAM90A1	55138	broad.mit.edu	37	12	8374849	8374849	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:8374849C>T	uc001qui.2	-	7	1523	c.964G>A	c.(964-966)GGA>AGA	p.G322R	FAM90A1_uc001quh.2_Missense_Mutation_p.G322R	NM_018088	NP_060558	Q86YD7	F90A1_HUMAN	hypothetical protein LOC55138	322							nucleic acid binding|zinc ion binding			ovary(1)	1				Kidney(36;0.0866)		AGCTCACCTCCCTGGATGGCG	0.637			NA											6	27					0	0	0.001168	0	0
DNM1L	10059	broad.mit.edu	37	12	32884849	32884849	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:32884849G>T	uc001rld.2	+	12	1579	c.1418G>T	c.(1417-1419)CGT>CTT	p.R473L	DNM1L_uc001rle.2_Missense_Mutation_p.R473L|DNM1L_uc001rlf.2_Missense_Mutation_p.R473L|DNM1L_uc010skh.1_Missense_Mutation_p.R539L|DNM1L_uc001rlg.2_Missense_Mutation_p.R539L|DNM1L_uc001rlh.2_Missense_Mutation_p.R526L|DNM1L_uc010ski.1_Missense_Mutation_p.R270L	NM_012062	NP_036192	O00429	DNM1L_HUMAN	dynamin 1-like isoform 1	473	Middle domain.|Interaction with GSK3B.				cellular component disassembly involved in apoptosis|mitochondrial fragmentation involved in apoptosis|mitochondrial membrane organization|positive regulation of mitochondrial fission	cis-Golgi network|cytosol|endomembrane system|endoplasmic reticulum|mitochondrial outer membrane	GTP binding|GTPase activity|ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2	Lung NSC(5;2.15e-06)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGTCTTCTTCGTAAAAGGTTG	0.318			NA											16	81					2.94398e-08	3.99158e-08	0.007413	1	0
ALG10	84920	broad.mit.edu	37	12	34176900	34176900	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:34176900G>A	uc001rlm.2	+	2	494	c.175G>A	c.(175-177)GAT>AAT	p.D59N		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	59	Extracellular (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				TTTAAAGTGGGATCCCATGAT	0.413			NA											77	183					0	0	0.00361	0	0
ALG10	84920	broad.mit.edu	37	12	34179422	34179422	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:34179422G>A	uc001rlm.2	+	3	1313	c.994G>A	c.(994-996)GTC>ATC	p.V332I		NM_032834	NP_116223	Q5BKT4	AG10A_HUMAN	asparagine-linked glycosylation 10 homolog	332	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			skin(1)	1	Lung NSC(5;3.82e-05)|Acute lymphoblastic leukemia(23;0.0142)|all_hematologic(23;0.0429)	Lung NSC(34;0.204)|all_lung(34;0.235)				GGTTACCTTAGTCTCTGTGTT	0.328			NA											37	191					0	0	0.00623	0	0
LRRK2	120892	broad.mit.edu	37	12	40709081	40709081	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:40709081G>T	uc001rmg.3	+	33	4927	c.4806G>T	c.(4804-4806)TGG>TGT	p.W1602C	LRRK2_uc009zjw.2_Missense_Mutation_p.W440C|LRRK2_uc001rmi.2_Missense_Mutation_p.W435C	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1602					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AACCCAAGTGGCTTTGTAAAA	0.413			NA											52	142					3.88204e-17	6.46387e-17	0.00361	1	0
COL2A1	1280	broad.mit.edu	37	12	48371152	48371152	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:48371152G>T	uc001rqu.2	-	46	3405	c.3224C>A	c.(3223-3225)TCC>TAC	p.S1075Y	COL2A1_uc001rqt.2_5'Flank|COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Missense_Mutation_p.S1006Y	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	1075	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	GGGGCCAGGGGAGCCAGGGGG	0.612			NA											8	88					7.48243e-07	9.59663e-07	0.006214	1	0
AQP2	359	broad.mit.edu	37	12	50344816	50344816	+	Missense_Mutation	SNP	A	A	C	rs104894331		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:50344816A>C	uc001rvn.2	+	1	293	c.203A>C	c.(202-204)AAC>ACC	p.N68T		NM_000486	NP_000477	P41181	AQP2_HUMAN	aquaporin 2	68	Cytoplasmic (Potential).|NPA 1.		N -> S (in ANDI).		cellular response to copper ion|cellular response to mercury ion|excretion	apical plasma membrane|integral to membrane|transport vesicle membrane	glycerol transmembrane transporter activity|water channel activity			ovary(2)	2						GCCCACATCAACCCTGCCGTG	0.662			NA											7	25					0	0	0.006122	0	0
LIMA1	51474	broad.mit.edu	37	12	50571335	50571335	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:50571335G>C	uc001rwj.3	-	11	1966	c.1792C>G	c.(1792-1794)CAA>GAA	p.Q598E	LIMA1_uc001rwg.3_Missense_Mutation_p.Q296E|LIMA1_uc001rwh.3_Missense_Mutation_p.Q437E|LIMA1_uc001rwi.3_Missense_Mutation_p.Q439E|LIMA1_uc001rwk.3_Missense_Mutation_p.Q599E|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	598					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						GAGGTGCTTTGAAATGAAGCT	0.498			NA											38	289					0	0	0.005524	0	0
LIMA1	51474	broad.mit.edu	37	12	50571584	50571584	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:50571584G>C	uc001rwj.3	-	11	1717	c.1543C>G	c.(1543-1545)CAG>GAG	p.Q515E	LIMA1_uc001rwg.3_Missense_Mutation_p.Q213E|LIMA1_uc001rwh.3_Missense_Mutation_p.Q354E|LIMA1_uc001rwi.3_Missense_Mutation_p.Q356E|LIMA1_uc001rwk.3_Missense_Mutation_p.Q516E|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	515					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TTCTCCTGCTGAGAGGAGGCC	0.567			NA											27	150					0	0	0.004656	0	0
BIN2	51411	broad.mit.edu	37	12	51695872	51695872	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:51695872C>T	uc001ryg.2	-	5	392	c.340G>A	c.(340-342)GAG>AAG	p.E114K	BIN2_uc009zlz.2_Intron|BIN2_uc001ryh.2_5'UTR|BIN2_uc010sng.1_Missense_Mutation_p.E88K	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	114	BAR.					cytoplasm	protein binding			ovary(1)	1						AGTTTCTCCTCGTAGTCTTCC	0.463			NA											7	44					0	0	0.00308	0	0
KRT2	3849	broad.mit.edu	37	12	53041528	53041528	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:53041528G>A	uc001sat.2	-	6	1267	c.1234C>T	c.(1234-1236)CAT>TAT	p.H412Y		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	412	Coil 2.|Rod.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		TTCTTCACATGTGCGATCTCC	0.587			NA											5	26					0	0	0.001168	0	0
KRT4	3851	broad.mit.edu	37	12	53202170	53202170	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:53202170C>A	uc001saz.2	-	6	1526	c.1255G>T	c.(1255-1257)GGT>TGT	p.G419C		NM_002272	NP_002263	B4DRS2	B4DRS2_HUMAN	keratin 4	345						keratin filament	structural molecule activity			ovary(4)|skin(2)	6						AGGTTGTCACCATGTTGGTCA	0.507	Pancreas(190;284 2995 41444 45903)		NA											22	96					1.50039e-11	2.25707e-11	0.012319	1	0
EIF4B	1975	broad.mit.edu	37	12	53431372	53431372	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:53431372C>G	uc001sbh.3	+	11	1692	c.1486C>G	c.(1486-1488)CAG>GAG	p.Q496E	EIF4B_uc010snu.1_Missense_Mutation_p.Q501E|EIF4B_uc010snv.1_Missense_Mutation_p.Q457E|EIF4B_uc001sbi.2_Missense_Mutation_p.Q248E	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	496					insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						TGCTCGATCTCAGAGCTCAGA	0.478			NA											3	36					0	0	0.000602	0	0
OR6C2	341416	broad.mit.edu	37	12	55846199	55846199	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:55846199G>C	uc001sgz.1	+	1	202	c.202G>C	c.(202-204)GAA>CAA	p.E68Q		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TTCCTTCTTAGAAGTCTCATT	0.388			NA											4	149					0	0	0.000602	0	0
KIF5A	3798	broad.mit.edu	37	12	57958726	57958726	+	Silent	SNP	C	C	T	rs143178113		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:57958726C>T	uc001sor.1	+	6	679	c.471C>T	c.(469-471)CAC>CAT	p.H157H	KIF5A_uc010srr.1_Silent_p.H68H	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	157	Kinesin-motor.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TGTCCGTGCACGAGGACAAGA	0.532			NA											5	45					0	0	0.000602	0	0
PTPRB	5787	broad.mit.edu	37	12	70928675	70928675	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:70928675G>T	uc001swb.3	-	28	5518	c.5488C>A	c.(5488-5490)CTG>ATG	p.L1830M	uc001svz.2_Intron|PTPRB_uc010sto.1_Missense_Mutation_p.L1740M|PTPRB_uc010stp.1_Missense_Mutation_p.L1740M|PTPRB_uc001swc.3_Missense_Mutation_p.L2048M|PTPRB_uc001swa.3_Missense_Mutation_p.L1960M	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1830	Cytoplasmic (Potential).|Tyrosine-protein phosphatase.				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGCATCTGCAGGATGAGGTCC	0.502			NA											14	49					4.7546e-09	6.62725e-09	0.004007	1	0
ZFC3H1	196441	broad.mit.edu	37	12	72057219	72057219	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:72057219G>A	uc001swo.2	-	1	531	c.172C>T	c.(172-174)CCT>TCT	p.P58S	ZFC3H1_uc010sts.1_Missense_Mutation_p.P58S|ZFC3H1_uc001swp.2_Missense_Mutation_p.P58S|THAP2_uc001swq.2_5'Flank	NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	58	Ser-rich.				RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						GCCGAGTGAGGAGGCCTTCGC	0.632			NA									OREG0021993	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	83					0	0	0.009096	0	0
TPH2	121278	broad.mit.edu	37	12	72335436	72335436	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:72335436G>C	uc009zrw.1	+	2	319	c.178G>C	c.(178-180)GAA>CAA	p.E60Q	TPH2_uc001swy.2_5'UTR	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	60					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	AGCTGCTACCGAAAGTGGCAA	0.408			NA											8	56					0	0	0.00308	0	0
NAV3	89795	broad.mit.edu	37	12	78513135	78513135	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:78513135C>T	uc001syp.2	+	15	3332	c.3159C>T	c.(3157-3159)CCC>CCT	p.P1053P	NAV3_uc001syo.2_Silent_p.P1053P|NAV3_uc010sub.1_Silent_p.P553P|NAV3_uc009zsf.2_Silent_p.P61P	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1053	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAAAGCCCCCCTCAGGCATTG	0.478			NA								HNSCC(70;0.22)			27	87					0	0	0.005443	0	0
MYF5	4617	broad.mit.edu	37	12	81112769	81112769	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:81112769C>A	uc001szg.2	+	3	842	c.707C>A	c.(706-708)ACC>AAC	p.T236N		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	236					muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						GTTGCCAGCACCGATTCACAG	0.507			NA											12	91					2.27111e-07	2.98996e-07	0.001368	1	0
C12orf12	196477	broad.mit.edu	37	12	91348087	91348087	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:91348087G>A	uc001tbj.2	-	1	867	c.433C>T	c.(433-435)CGC>TGC	p.R145C		NM_152638	NP_689851	Q8TC90	CL012_HUMAN	hypothetical protein LOC196477	145										central_nervous_system(1)|pancreas(1)	2						CGGCCTCTGCGGCCCCAGCGC	0.697			NA											3	25					0	0	0.004672	0	0
CCDC38	120935	broad.mit.edu	37	12	96292380	96292380	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:96292380C>A	uc001tek.1	-	6	733	c.499G>T	c.(499-501)GAA>TAA	p.E167*		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	167	Potential.									skin(1)	1						TGGTCATTTTCTCGAAGGAAC	0.363			NA											28	124					3.65163e-15	5.89227e-15	0.00632	1	0
CCDC38	120935	broad.mit.edu	37	12	96292419	96292419	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:96292419G>T	uc001tek.1	-	6	694	c.460C>A	c.(460-462)CTC>ATC	p.L154I		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	154	Potential.									skin(1)	1						TCATCTTGGAGCTTTTTCTCT	0.403			NA											34	91					2.80507e-11	4.1776e-11	0.012213	1	0
ANKS1B	56899	broad.mit.edu	37	12	99898273	99898273	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:99898273C>A	uc001tge.1	-	10	1836	c.1419G>T	c.(1417-1419)AGG>AGT	p.R473S	ANKS1B_uc001tgf.1_Missense_Mutation_p.R53S|ANKS1B_uc009ztt.1_Missense_Mutation_p.R439S	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	473						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		GGGAAGGTGCCCTTGCAATTT	0.383			NA											22	69					2.52088e-20	4.33574e-20	0.00278	1	0
ANO4	121601	broad.mit.edu	37	12	101520766	101520766	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:101520766A>G	uc010svm.1	+	27	3358	c.2786A>G	c.(2785-2787)TAT>TGT	p.Y929C	ANO4_uc001thw.2_Missense_Mutation_p.Y894C|ANO4_uc001thx.2_Missense_Mutation_p.Y929C|ANO4_uc001thy.2_Missense_Mutation_p.Y449C	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	929	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						GAGATGATGTATGAAGCAGAA	0.453			NA								HNSCC(74;0.22)			12	30					0	0	0.001368	0	0
GLT8D2	83468	broad.mit.edu	37	12	104397019	104397019	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:104397019C>A	uc001tkh.1	-	5	584	c.178G>T	c.(178-180)GGG>TGG	p.G60W	GLT8D2_uc001tki.1_Missense_Mutation_p.G60W	NM_031302	NP_112592	Q9H1C3	GL8D2_HUMAN	glycosyltransferase 8 domain containing 2	60	Lumenal (Potential).					integral to membrane	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2						CCCATCCTCCCTGCTGCAGCA	0.473			NA											24	135					1.1804e-14	1.88143e-14	0.003954	1	0
BTBD11	121551	broad.mit.edu	37	12	108010866	108010866	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:108010866C>A	uc001tmk.1	+	8	2523	c.2002C>A	c.(2002-2004)CTC>ATC	p.L668I	BTBD11_uc009zut.1_Missense_Mutation_p.L668I|BTBD11_uc001tmj.2_Missense_Mutation_p.L668I|BTBD11_uc001tml.1_Missense_Mutation_p.L205I	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	668	ANK 2.					integral to membrane	DNA binding			skin(2)|ovary(1)	3						TCCTCTGCAGCTCCTCCTGGA	0.587			NA											13	85					2.61681e-11	3.90838e-11	0.00245	1	0
CMKLR1	1240	broad.mit.edu	37	12	108685637	108685637	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:108685637C>A	uc009zuw.2	-	3	1294	c.1103G>T	c.(1102-1104)AGG>ATG	p.R368M	CMKLR1_uc001tmw.2_Missense_Mutation_p.R368M|CMKLR1_uc001tmv.2_Missense_Mutation_p.R366M|CMKLR1_uc009zuv.2_Missense_Mutation_p.R368M	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	368	Cytoplasmic (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						GCCGGTCTCCCTCTCATTCAT	0.478			NA											31	121					8.4185e-14	1.31966e-13	0.012213	1	0
DAO	1610	broad.mit.edu	37	12	109294182	109294182	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:109294182C>A	uc001tnr.3	+	11	1068	c.915C>A	c.(913-915)GTC>GTA	p.V305V	DAO_uc001tnq.3_Silent_p.V239V|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	305					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						TCTCCTAGGTCATCCACAACT	0.552			NA											16	60					1.99824e-07	2.63737e-07	0.00499	1	0
MAPKAPK5	8550	broad.mit.edu	37	12	112308955	112308955	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:112308955C>G	uc001tta.2	+	7	809	c.550C>G	c.(550-552)CAG>GAG	p.Q184E	MAPKAPK5_uc001tsz.2_Missense_Mutation_p.Q184E|MAPKAPK5_uc001ttb.2_Missense_Mutation_p.Q117E	NM_139078	NP_620777	Q8IW41	MAPK5_HUMAN	MAP kinase-activated protein kinase 5 isoform 2	184	Protein kinase.				signal transduction	cytoplasm|nucleus	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)	3						GATGACACCCCAGTTCACCCC	0.458			NA											4	122					0	0	0.009096	0	0
RBM19	9904	broad.mit.edu	37	12	114397086	114397086	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:114397086C>A	uc009zwi.2	-	5	646	c.502G>T	c.(502-504)GAC>TAC	p.D168Y	RBM19_uc001tvn.3_Missense_Mutation_p.D168Y|RBM19_uc001tvm.2_Missense_Mutation_p.D168Y	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	168					multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					TTCAGGTAGTCACTGGCCGGC	0.617			NA											22	73					2.98393e-07	3.92346e-07	0.00278	1	0
MED13L	23389	broad.mit.edu	37	12	116420396	116420396	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:116420396C>A	uc001tvw.2	-	22	5023	c.4968G>T	c.(4966-4968)AGG>AGT	p.R1656S		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	1656					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		CTATTCTCTCCCTTTCTGTAA	0.458			NA											7	35					0.00307968	0.00330101	0.00308	1	0
MED13L	23389	broad.mit.edu	37	12	116675300	116675300	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:116675300C>G	uc001tvw.2	-	2	338	c.283G>C	c.(283-285)GTG>CTG	p.V95L		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	95					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		ATTACACCCACTAGGTTGGGT	0.378			NA											31	78					0	0	0.008361	0	0
NOS1	4842	broad.mit.edu	37	12	117768666	117768666	+	Missense_Mutation	SNP	C	C	T	rs74738204		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:117768666C>T	uc001twm.1	-	2	895	c.209G>A	c.(208-210)CGG>CAG	p.R70Q		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	70	Interaction with NOSIP (By similarity).|PDZ.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CACCAAGGGCCGGCCGTTGAC	0.612	Esophageal Squamous(162;1748 2599 51982 52956)		NA											5	48					0	0	0.000602	0	0
KSR2	283455	broad.mit.edu	37	12	118020147	118020147	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:118020147G>A	uc001two.2	-	6	1157	c.1102C>T	c.(1102-1104)CGC>TGC	p.R368C		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	397					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GGGGACCAGCGTGGCACTGAC	0.577			NA											8	107					0	0	0.004482	0	0
KDM2B	84678	broad.mit.edu	37	12	121878685	121878685	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:121878685A>T	uc001uat.2	-	21	3648	c.3544T>A	c.(3544-3546)TGG>AGG	p.W1182R	KDM2B_uc001uaq.2_Missense_Mutation_p.W622R|KDM2B_uc010szy.1_Missense_Mutation_p.W622R|KDM2B_uc001uar.2_Missense_Mutation_p.W773R|KDM2B_uc001uas.2_Missense_Mutation_p.W1113R|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Missense_Mutation_p.W430R|KDM2B_uc010szx.1_Missense_Mutation_p.W430R|KDM2B_uc001uap.2_RNA	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform	1182	LRR 3.				embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CCCTCCACCCACTGGACATCC	0.647			NA											5	57					0	0	0.000602	0	0
RIMBP2	23504	broad.mit.edu	37	12	130907029	130907029	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:130907029C>G	uc001uil.2	-	13	2603	c.2439G>C	c.(2437-2439)CAG>CAC	p.Q813H		NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	813						cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		GCCGGGACCTCTGAGGACCAG	0.572			NA											6	45					0	0	0.001984	0	0
ULK1	8408	broad.mit.edu	37	12	132400970	132400970	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:132400970A>G	uc001uje.2	+	20	2174	c.1906A>G	c.(1906-1908)ACC>GCC	p.T636A		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	636					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CTTCCCGAAGACCCCCAGCTC	0.692			NA											11	59					0	0	0.001368	0	0
P2RX2	22953	broad.mit.edu	37	12	133196907	133196907	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:133196907C>A	uc001ukj.1	+	6	609	c.609C>A	c.(607-609)ATC>ATA	p.I203I	P2RX2_uc001uki.1_Silent_p.I203I|P2RX2_uc001ukk.1_Silent_p.I203I|P2RX2_uc001ukl.1_Silent_p.I179I|P2RX2_uc001ukm.1_Silent_p.I131I|P2RX2_uc001ukn.1_Silent_p.I111I|P2RX2_uc009zyt.1_Silent_p.I203I|P2RX2_uc001uko.1_Missense_Mutation_p.P168T	NM_170682	NP_733782	Q9UBL9	P2RX2_HUMAN	purinergic receptor P2X2 isoform A	203	Extracellular (Potential).				positive regulation of calcium ion transport into cytosol|positive regulation of calcium-mediated signaling|protein homooligomerization	integral to membrane	ATP binding|extracellular ATP-gated cation channel activity|identical protein binding|purinergic nucleotide receptor activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0767)		OV - Ovarian serous cystadenocarcinoma(86;2.32e-08)|Epithelial(86;8.62e-08)|all cancers(50;4.5e-06)		AGAACAGCATCCACTACCCCA	0.557			NA											17	49					5.3912e-06	6.62947e-06	0.006122	1	0
LATS2	26524	broad.mit.edu	37	13	21563266	21563266	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:21563266C>A	uc009zzs.2	-	4	1018	c.653G>T	c.(652-654)GGA>GTA	p.G218V	LATS2_uc001unr.3_Missense_Mutation_p.G218V	NM_014572	NP_055387	Q9NRM7	LATS2_HUMAN	LATS, large tumor suppressor, homolog 2	218					cell division|G1/S transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|intracellular protein kinase cascade|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity	microtubule organizing center|nucleus|spindle pole	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|central_nervous_system(3)|ovary(2)|breast(1)|pancreas(1)	10		all_cancers(29;4.74e-22)|all_epithelial(30;1.45e-18)|all_lung(29;4.69e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000781)|Epithelial(112;0.00144)|OV - Ovarian serous cystadenocarcinoma(117;0.0183)|Lung(94;0.0375)|LUSC - Lung squamous cell carcinoma(192;0.104)		GGGGCCGACTCCGGGGAAAAG	0.721			NA											4	16					0.00909568	0.00961122	0.009096	1	0
USPL1	10208	broad.mit.edu	37	13	31233061	31233061	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:31233061C>T	uc001utc.2	+	9	3279	c.2847C>T	c.(2845-2847)GCC>GCT	p.A949A	USPL1_uc001utd.2_Silent_p.A620A|USPL1_uc001ute.1_Silent_p.A620A	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	949					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		TTGATATTGCCAGTGAGTCTG	0.413	Ovarian(60;318 1180 1554 28110 31601)		NA											28	124					0	0	0.00632	0	0
STARD13	90627	broad.mit.edu	37	13	33703295	33703295	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:33703295C>G	uc001uuw.2	-	5	1645	c.1519G>C	c.(1519-1521)GTC>CTC	p.V507L	STARD13_uc001uuu.2_Missense_Mutation_p.V499L|STARD13_uc001uuv.2_Missense_Mutation_p.V389L|STARD13_uc001uux.2_Missense_Mutation_p.V472L|STARD13_uc010tec.1_RNA|STARD13_uc010abh.1_Missense_Mutation_p.V492L	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	507					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		TCAGGCAAGACATCTTTGGAC	0.448			NA											8	98					0	0	0.004482	0	0
CCNA1	8900	broad.mit.edu	37	13	37012872	37012872	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:37012872T>G	uc001uvr.3	+	5	1111	c.761T>G	c.(760-762)GTT>GGT	p.V254G	CCNA1_uc010teo.1_Missense_Mutation_p.V210G|CCNA1_uc010abq.2_Missense_Mutation_p.V210G|CCNA1_uc010abp.2_Missense_Mutation_p.V210G|CCNA1_uc001uvs.3_Missense_Mutation_p.V253G|CCNA1_uc010abr.2_Intron	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	254					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		CTGGTGGAGGTTGGGGAAGAA	0.507			NA											7	43					0	0	0.008871	0	0
LOC647288	647288	broad.mit.edu	37	13	75814311	75814311	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:75814311G>T	uc010ths.1	-	1	207	c.166C>A	c.(166-168)CTC>ATC	p.L56I		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						AAAAAAAGGAGAACAACAAAA	0.418			NA											18	81					2.94398e-08	3.99158e-08	0.007413	1	0
EDNRB	1910	broad.mit.edu	37	13	78474043	78474043	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:78474043T>A	uc001vko.2	-	6	1403	c.1145A>T	c.(1144-1146)AAC>ATC	p.N382I	EDNRB_uc001vkq.1_Missense_Mutation_p.N382I|uc001vkn.1_Intron|EDNRB_uc010aez.1_Missense_Mutation_p.N382I|EDNRB_uc001vkp.1_Missense_Mutation_p.N465I	NM_001122659	NP_001116131	P24530	EDNRB_HUMAN	endothelin receptor type B isoform 1 precursor	382	Helical; Name=7; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|enteric nervous system development|enteric smooth muscle cell differentiation|macrophage chemotaxis|negative regulation of adenylate cyclase activity|negative regulation of cellular protein metabolic process|negative regulation of neuron maturation|negative regulation of transcription from RNA polymerase II promoter|vein smooth muscle contraction	integral to plasma membrane	endothelin-B receptor activity|peptide hormone binding				0		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0933)	Bosentan(DB00559)	AGCAATTGGGTTAATGCAGGA	0.338			NA											7	48					0	0	0.00308	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369524	86369524	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:86369524T>A	uc001vll.1	-	2	1579	c.1120A>T	c.(1120-1122)ATT>TTT	p.I374F	SLITRK6_uc010afe.1_Missense_Mutation_p.I139F	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	374	Extracellular (Potential).|LRR 6.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CTGTGAATAATATTTCCCGCT	0.383			NA											8	63					0	0	0.004482	0	0
DCT	1638	broad.mit.edu	37	13	95117945	95117945	+	Missense_Mutation	SNP	C	C	G	rs142171852	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:95117945C>G	uc001vlv.3	-	4	1232	c.805G>C	c.(805-807)GAT>CAT	p.D269H	DCT_uc010afh.2_Missense_Mutation_p.D269H	NM_001922	NP_001913	P40126	TYRP2_HUMAN	dopachrome tautomerase isoform 1	269	Lumenal, melanosome (Potential).				epidermis development|melanin biosynthetic process from tyrosine	cytosol|integral to membrane|melanosome membrane|microsome	copper ion binding|dopachrome isomerase activity|oxidoreductase activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;3.71e-42)|all_epithelial(2;3.76e-31)|all_lung(2;5.16e-14)|Lung NSC(4;1.33e-13)|Breast(118;0.0013)|Hepatocellular(115;0.00886)|Renal(2;0.00988)		COAD - Colon adenocarcinoma(199;7.07e-05)|GBM - Glioblastoma multiforme(99;0.000472)		AGAGTCGGATCGTCTGGTCTC	0.502			NA											4	47					0	0	0.009096	0	0
NALCN	259232	broad.mit.edu	37	13	101726892	101726892	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:101726892G>T	uc001vox.1	-	36	4265	c.4076C>A	c.(4075-4077)ACT>AAT	p.T1359N		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1359	Extracellular (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					ATATTTCACAGTACCAAATAA	0.338			NA											10	88					1.76689e-08	2.40187e-08	0.006214	1	0
NALCN	259232	broad.mit.edu	37	13	101756713	101756713	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:101756713C>A	uc001vox.1	-	25	3011	c.2822G>T	c.(2821-2823)GGC>GTC	p.G941V		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	941	Helical; Name=S2 of repeat III; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					GAAAAATAAGCCATCTGCCAT	0.373			NA											9	70					0.000442599	0.000490004	0.006214	1	0
NALCN	259232	broad.mit.edu	37	13	102030993	102030993	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:102030993G>T	uc001vox.1	-	4	492	c.303C>A	c.(301-303)TCC>TCA	p.S101S	NALCN_uc001voy.2_5'UTR|NALCN_uc001voz.2_Silent_p.S101S|NALCN_uc001vpa.2_Silent_p.S101S	NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	101	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTTTCACATAGGAACTATCCC	0.303			NA											13	71					1.05317e-09	1.49797e-09	0.00245	1	0
SLC10A2	6555	broad.mit.edu	37	13	103698485	103698485	+	Nonstop_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr13:103698485A>C	uc001vpy.3	-	6	1642	c.1045T>G	c.(1045-1047)TAG>GAG	p.*349E		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	349					bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					CTTGATGTCTACTTTTCGTCA	0.373			NA											13	58					0	0	0.001368	0	0
POTEG	404785	broad.mit.edu	37	14	19553761	19553761	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:19553761C>A	uc001vuz.1	+	1	397	c.345C>A	c.(343-345)AGC>AGA	p.S115R	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	115										ovary(1)	1						GCGGCAAGAGCAAAGTGGGCC	0.597			NA											65	420					6.25564e-26	1.09763e-25	0.00361	1	0
OR4Q3	441669	broad.mit.edu	37	14	20216317	20216317	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:20216317A>T	uc010tkt.1	+	1	731	c.731A>T	c.(730-732)CAC>CTC	p.H244L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGTGCTTCTCACCTGACAGTG	0.458			NA											4	171					0	0	0.009096	0	0
OR4K15	81127	broad.mit.edu	37	14	20444601	20444601	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:20444601T>C	uc010tkx.1	+	1	924	c.924T>C	c.(922-924)CCT>CCC	p.P308P		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	308	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTTTAAACCCTGTAATCTACA	0.408			NA											9	88					0	0	0.008291	0	0
OR4K13	390433	broad.mit.edu	37	14	20502628	20502628	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:20502628C>G	uc010tkz.1	-	1	290	c.290G>C	c.(289-291)TGT>TCT	p.C97S		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		CTGGGAATAACATCCCCACCA	0.468			NA											32	71					0	0	0.009535	0	0
RNASE2	6036	broad.mit.edu	37	14	21424061	21424061	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:21424061A>T	uc010aif.2	+	2	200	c.131A>T	c.(130-132)AAT>ATT	p.N44I	RNASE2_uc001vyl.1_Missense_Mutation_p.N44I	NM_002934	NP_002925	P10153	RNAS2_HUMAN	ribonuclease, RNase A family, 2 (liver,	44					chemotaxis|RNA catabolic process	extracellular region|lysosome	nucleic acid binding|pancreatic ribonuclease activity			ovary(1)	1	all_cancers(95;0.00381)		OV - Ovarian serous cystadenocarcinoma(11;6.3e-09)|Epithelial(56;1.42e-07)|all cancers(55;5.48e-07)	GBM - Glioblastoma multiforme(265;0.0187)		CAGCACATCAATATGACCTCC	0.453			NA											13	72					0	0	0.001855	0	0
SALL2	6297	broad.mit.edu	37	14	21992261	21992261	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:21992261G>A	uc001wbe.2	-	2	1883	c.1601C>T	c.(1600-1602)TCA>TTA	p.S534L	SALL2_uc010tly.1_Missense_Mutation_p.S532L|SALL2_uc010tlz.1_Missense_Mutation_p.S397L|SALL2_uc001wbf.3_Intron|SALL2_uc010tma.1_Missense_Mutation_p.S399L|SALL2_uc001wbg.1_Intron	NM_005407	NP_005398	Q9Y467	SALL2_HUMAN	sal-like 2	534							DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|large_intestine(1)	3	all_cancers(95;0.000662)			GBM - Glioblastoma multiforme(265;0.0151)		ACTGATGGCTGAGCCCTCACT	0.512			NA											5	84					0	0	0.000602	0	0
MYH7	4625	broad.mit.edu	37	14	23902894	23902894	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:23902894C>A	uc001wjx.2	-	3	154	c.48G>T	c.(46-48)CTG>CTT	p.L16L		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	16	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTGACTTGCGCAGGTAGGGGG	0.577			NA											10	83					2.74318e-10	3.98314e-10	0.006214	1	0
TINF2	26277	broad.mit.edu	37	14	24709282	24709282	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:24709282C>A	uc001woa.3	-	8	1551	c.1209G>T	c.(1207-1209)CAG>CAT	p.Q403H	TINF2_uc010alm.2_3'UTR|TINF2_uc001wob.3_3'UTR|TINF2_uc010tof.1_Missense_Mutation_p.Q368H|TINF2_uc001woc.3_3'UTR	NM_001099274	NP_001092744	Q9BSI4	TINF2_HUMAN	TERF1 (TRF1)-interacting nuclear factor 2	403					negative regulation of epithelial cell proliferation|negative regulation of protein ADP-ribosylation|negative regulation of telomere maintenance via telomerase|positive regulation of telomere maintenance|protein localization to chromosome, telomeric region|telomere assembly|telomere maintenance via telomere lengthening	nuclear telomere cap complex|nucleoplasm|perinucleolar chromocenter	protein binding|protein binding|telomeric DNA binding				0				GBM - Glioblastoma multiforme(265;0.0185)		TTCCTTCCCCCTGGCCATTTT	0.502			NA							Ataxia_Pancytopenia_syndrome|Congenital_Dyskeratosis				9	400					2.17888e-05	2.60269e-05	0.006214	1	0
MAPK1IP1L	93487	broad.mit.edu	37	14	55529931	55529931	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:55529931A>G	uc001xbq.1	+	3	778	c.614A>G	c.(613-615)TAT>TGT	p.Y205C		NM_144578	NP_653179	Q8NDC0	MISSL_HUMAN	MAPK-interacting and spindle-stabilizing	205	Pro-rich.										0						CCAGCACCATATCCTGCCCCT	0.607			NA											3	100					0	0	0.004672	0	0
KCNH5	27133	broad.mit.edu	37	14	63269127	63269127	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:63269127C>A	uc001xfx.2	-	9	1793	c.1742G>T	c.(1741-1743)GGA>GTA	p.G581V	KCNH5_uc001xfy.2_Missense_Mutation_p.G581V|KCNH5_uc001xfz.1_Missense_Mutation_p.G523V	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	581	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		CACACTTTCTCCAGCATGGTA	0.517			NA											16	47					2.23348e-06	2.80259e-06	0.004007	1	0
WDR89	112840	broad.mit.edu	37	14	64066267	64066267	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:64066267C>A	uc001xgh.2	-	3	640	c.394G>T	c.(394-396)GCT>TCT	p.A132S	WDR89_uc001xgi.2_Missense_Mutation_p.A132S	NM_001008726	NP_001008726	Q96FK6	WDR89_HUMAN	WD repeat domain 89	132	WD 3.										0				OV - Ovarian serous cystadenocarcinoma(108;0.00543)|all cancers(60;0.0181)|BRCA - Breast invasive adenocarcinoma(234;0.101)		TCTGTACCAGCACAAATAATA	0.353			NA											4	53					0.000602214	0.000659027	0.000602	1	0
RAB15	376267	broad.mit.edu	37	14	65419249	65419249	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:65419249G>A	uc001xhz.2	-	2	246	c.165C>T	c.(163-165)ATC>ATT	p.I55I	FNTB_uc010tsl.1_Intron|FNTB_uc010tsm.1_Intron|RAB15_uc010aqk.2_RNA	NM_198686	NP_941959	P59190	RAB15_HUMAN	RAB15, member RAS onocogene family	55					protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding			ovary(1)	1				all cancers(60;0.00136)|OV - Ovarian serous cystadenocarcinoma(108;0.00593)|BRCA - Breast invasive adenocarcinoma(234;0.0102)		TCCGCACTTTGATGCCGTCTA	0.433			NA											19	117					0	0	0.010504	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72176331	72176331	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:72176331G>T	uc001xms.2	+	15	4569	c.4221G>T	c.(4219-4221)CTG>CTT	p.L1407L	SIPA1L1_uc001xmt.2_Silent_p.L1386L|SIPA1L1_uc001xmu.2_Silent_p.L1386L|SIPA1L1_uc001xmv.2_Silent_p.L1407L|SIPA1L1_uc010ttm.1_Silent_p.L861L|SIPA1L1_uc001xmw.2_Silent_p.L172L	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	1407	Ser-rich.				actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		CGACCCCTCTGACAAGGGAGA	0.557			NA											11	31					1.61879e-10	2.36366e-10	0.001368	1	0
RBM25	58517	broad.mit.edu	37	14	73554749	73554749	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:73554749C>T	uc001xno.2	+	6	631	c.423C>T	c.(421-423)CTC>CTT	p.L141L	RBM25_uc001xnn.3_Silent_p.L141L|RBM25_uc010ttu.1_Silent_p.L141L|RBM25_uc001xnp.2_5'UTR	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	141	RRM.				apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		AATCTACCCTCCGTGCACTCA	0.383			NA											5	71					0	0	0.001168	0	0
C14orf145	145508	broad.mit.edu	37	14	81251424	81251424	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:81251424C>A	uc001xux.2	-	14	2197	c.2026G>T	c.(2026-2028)GAT>TAT	p.D676Y	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	676	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		GTTTCTTCATCCCTGGATTTT	0.458			NA											25	196					9.86323e-18	1.65284e-17	0.003954	1	0
TSHR	7253	broad.mit.edu	37	14	81609827	81609827	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:81609827C>A	uc001xvd.1	+	10	1581	c.1425C>A	c.(1423-1425)CTC>CTA	p.L475L		NM_000369	NP_000360	P16473	TSHR_HUMAN	thyroid stimulating hormone receptor isoform 1	475	Extracellular (Potential).				cell-cell signaling|positive regulation of cell proliferation	integral to plasma membrane	protein binding|thyroid-stimulating hormone receptor activity			thyroid(289)|ovary(5)|lung(3)|kidney(1)|skin(1)	299				BRCA - Breast invasive adenocarcinoma(234;0.0402)	Thyrotropin Alfa(DB00024)	CTGTAGACCTCTACACTCACT	0.542			NA	Mis		toxic thyroid adenoma	thyroid  adenoma	Hereditary nonautoimmune hyperthyroidism; subclinical hypothyroidism 						25	70					1.5548e-18	2.62655e-18	0.005443	1	0
GTF2A1	2957	broad.mit.edu	37	14	81670426	81670426	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:81670426T>A	uc001xvf.1	-	3	587	c.155A>T	c.(154-156)CAG>CTG	p.Q52L	GTF2A1_uc010atb.1_Missense_Mutation_p.Q2L|GTF2A1_uc001xvg.1_Missense_Mutation_p.Q13L|GTF2A1_uc001xvh.1_Missense_Mutation_p.Q13L|SNORA79_uc001xvi.1_5'Flank	NM_015859	NP_056943	P52655	TF2AA_HUMAN	TFIIA alpha, p55 isoform 1	52					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|transcription factor TFIIA complex	DNA binding|protein binding|protein heterodimerization activity|TBP-class protein binding|transcription coactivator activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0287)		TGCCCTGGACTGCATTAGTTT	0.219			NA											13	38					0	0	0.001855	0	0
PTPN21	11099	broad.mit.edu	37	14	88940125	88940125	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:88940125C>G	uc001xwv.3	-	14	2864	c.2533G>C	c.(2533-2535)GAT>CAT	p.D845H	PTPN21_uc010twc.1_Missense_Mutation_p.D641H	NM_007039	NP_008970	Q16825	PTN21_HUMAN	protein tyrosine phosphatase, non-receptor type	845						cytoplasm|cytoskeleton	binding|protein tyrosine phosphatase activity			ovary(3)|skin(1)	4						TTTTTTGCATCTACTCGAGTC	0.403			NA											6	102					0	0	0.001168	0	0
KCNK13	56659	broad.mit.edu	37	14	90651011	90651011	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:90651011G>C	uc001xye.1	+	2	1333	c.891G>C	c.(889-891)GGG>GGC	p.G297G		NM_022054	NP_071337	Q9HB14	KCNKD_HUMAN	potassium channel, subfamily K, member 13	297	Cytoplasmic (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(1)	1		all_cancers(154;0.186)				TGGACAGCGGGTGCTGCCCGC	0.537			NA											7	118					0	0	0.004482	0	0
C14orf102	55051	broad.mit.edu	37	14	90764712	90764712	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:90764712C>A	uc001xyi.1	-	8	1589	c.1558G>T	c.(1558-1560)GAA>TAA	p.E520*	C14orf102_uc010atp.1_Nonsense_Mutation_p.E25*|C14orf102_uc001xyj.1_Nonsense_Mutation_p.E289*	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	520							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		CAAAAGGGTTCAAAGAATTCC	0.537			NA											23	54					9.95505e-16	1.62392e-15	0.002299	1	0
TTC7B	145567	broad.mit.edu	37	14	91059911	91059911	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:91059911C>A	uc001xyp.2	-	18	2148	c.2026G>T	c.(2026-2028)GCT>TCT	p.A676S	TTC7B_uc001xyo.2_Missense_Mutation_p.A120S|TTC7B_uc010ats.2_RNA	NM_001010854	NP_001010854	Q86TV6	TTC7B_HUMAN	tetratricopeptide repeat domain 7B	676							binding			ovary(2)	2		Melanoma(154;0.222)				AGAGACGAAGCCACTTCCGAC	0.597			NA											8	60					0.000157383	0.000178208	0.00308	1	0
UBR7	55148	broad.mit.edu	37	14	93685569	93685569	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:93685569G>T	uc001ybm.3	+	8	1058	c.822G>T	c.(820-822)AAG>AAT	p.K274N	UBR7_uc001ybn.3_Missense_Mutation_p.K198N|UBR7_uc010auq.2_Missense_Mutation_p.K123N	NM_175748	NP_786924	Q8N806	UBR7_HUMAN	ubiquitin protein ligase E3 component n-recognin	274							ubiquitin-protein ligase activity|zinc ion binding				0						CAGTGTTTAAGAATGAAAGCC	0.348			NA											6	41					8.12818e-05	9.32508e-05	0.001984	1	0
SERPINA6	866	broad.mit.edu	37	14	94780726	94780726	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:94780726G>T	uc001ycv.2	-	2	364	c.260C>A	c.(259-261)GCC>GAC	p.A87D	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	87					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	GAGAAGCTGGGCCCGTGTGTG	0.552			NA											16	32					3.35478e-16	5.52427e-16	0.003163	1	0
DYNC1H1	1778	broad.mit.edu	37	14	102472507	102472507	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:102472507G>C	uc001yks.2	+	27	5880	c.5716G>C	c.(5716-5718)GGA>CGA	p.G1906R		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1906	ATP (Potential).|AAA 1 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						TTCCCCATTTGGTAAGTTCTT	0.408			NA											26	66					0	0	0.004656	0	0
PPP1R13B	23368	broad.mit.edu	37	14	104220583	104220583	+	Splice_Site	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:104220583T>A	uc001yof.1	-	6	740	c.457_splice	c.e6-1	p.E153_splice	PPP1R13B_uc001yog.1_Splice_Site_p.E20_splice	NM_015316	NP_056131	Q96KQ4	ASPP1_HUMAN	apoptosis-stimulating protein of p53, 1						apoptosis|induction of apoptosis|negative regulation of cell cycle	cytoplasm|nucleus|plasma membrane	protein binding			ovary(1)	1		all_cancers(154;0.173)|all_epithelial(191;0.131)|Melanoma(154;0.155)				ACGCTGTTCCTAACAAAAGAA	0.129			NA											13	85					0	0	0.00245	0	0
GABRG3	2567	broad.mit.edu	37	15	27777961	27777961	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:27777961G>T	uc001zbg.1	+	10	1504	c.1338G>T	c.(1336-1338)CGG>CGT	p.R446R		NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	446	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CGTACTCCCGGGTCTTTTTCC	0.478	NSCLC(114;800 1656 7410 37729 45293)		NA											6	44					0.00198382	0.00214179	0.001984	1	0
RYR3	6263	broad.mit.edu	37	15	34146975	34146975	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:34146975C>A	uc001zhi.2	+	98	13939	c.13869C>A	c.(13867-13869)CTC>CTA	p.L4623L	RYR3_uc010bar.2_Silent_p.L4618L	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4623	Helical; Name=M7; (Potential).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		AGTCCTTTCTCTACCTTGCCT	0.423			NA											33	196					8.73648e-17	1.44318e-16	0.004289	1	0
TYRO3	7301	broad.mit.edu	37	15	41870231	41870231	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:41870231T>C	uc001zof.1	+	19	2654	c.2430T>C	c.(2428-2430)GCT>GCC	p.A810A		NM_006293	NP_006284	Q06418	TYRO3_HUMAN	TYRO3 protein tyrosine kinase precursor	810	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			ovary(3)|lung(2)|central_nervous_system(1)	6		all_cancers(109;7.33e-15)|all_epithelial(112;2.8e-12)|Lung NSC(122;3.48e-08)|all_lung(180;1.71e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.31e-18)|GBM - Glioblastoma multiforme(113;9.31e-07)|BRCA - Breast invasive adenocarcinoma(123;0.117)		TCGAGAGAGCTGAGGAGCCCA	0.602			NA											4	23					0	0	0.000602	0	0
LCMT2	9836	broad.mit.edu	37	15	43621794	43621794	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:43621794C>G	uc001zrg.2	-	1	1098	c.894G>C	c.(892-894)GAG>GAC	p.E298D	LCMT2_uc010udn.1_5'UTR|ADAL_uc001zrh.2_5'Flank|ADAL_uc010udo.1_5'Flank	NM_014793	NP_055608	O60294	LCMT2_HUMAN	leucine carboxyl methyltransferase 2	298					tRNA processing		methyltransferase activity|protein binding				0		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.1e-07)	L-Leucine(DB00149)	TCAGATGCCACTCCTCAAATT	0.522			NA											8	48					0	0	0.004482	0	0
FBN1	2200	broad.mit.edu	37	15	48756162	48756162	+	Missense_Mutation	SNP	C	C	A	rs140626		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:48756162C>A	uc001zwx.1	-	41	5327	c.4999G>T	c.(4999-5001)GTT>TTT	p.V1667F	FBN1_uc010beo.1_RNA	NM_000138	NP_000129	P35555	FBN1_HUMAN	fibrillin 1 precursor	1667	EGF-like 28; calcium-binding.				heart development|negative regulation of BMP signaling pathway by extracellular sequestering of BMP|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|skeletal system development	basement membrane|extracellular space|microfibril	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(2)|large_intestine(1)	3		all_lung(180;0.00279)		all cancers(107;4.24e-07)|GBM - Glioblastoma multiforme(94;1.41e-05)		TAGTTGCCAACGGTGTTGTAA	0.279			NA											3	29					0.00024832	0.000277565	0.009096	1	0
USP8	9101	broad.mit.edu	37	15	50791203	50791203	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:50791203C>G	uc001zym.3	+	21	3775	c.3275C>G	c.(3274-3276)TCC>TGC	p.S1092C	USP8_uc001zyl.3_Missense_Mutation_p.S1092C|USP8_uc001zyn.3_Missense_Mutation_p.S1092C|USP8_uc010ufh.1_Missense_Mutation_p.S986C|USP8_uc001zyp.3_Missense_Mutation_p.S259C	NM_001128611	NP_001122083	P40818	UBP8_HUMAN	ubiquitin specific peptidase 8	1092					cell cycle|cell proliferation|endosome organization|protein K48-linked deubiquitination|protein K63-linked deubiquitination|ubiquitin-dependent protein catabolic process	cytosol|early endosome|extrinsic to plasma membrane|nucleus	cysteine-type endopeptidase activity|SH3 domain binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(1)|central_nervous_system(1)	2				all cancers(107;0.000225)|GBM - Glioblastoma multiforme(94;0.000771)		TCTGATATCTCCGTTTCTTCT	0.413			NA											7	78					0	0	0.001984	0	0
WDR72	256764	broad.mit.edu	37	15	53908074	53908074	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:53908074T>C	uc002acj.2	-	15	2371	c.2329A>G	c.(2329-2331)AAA>GAA	p.K777E	WDR72_uc010bfi.1_Missense_Mutation_p.K777E	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	777										lung(1)|skin(1)	2				all cancers(107;0.0511)		GGCTGCATTTTTTTGGAGATC	0.398			NA											19	146					0	0	0.010504	0	0
UNC13C	440279	broad.mit.edu	37	15	54786898	54786898	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:54786898C>A	uc002ack.2	+	18	5026	c.5026C>A	c.(5026-5028)CCT>ACT	p.P1676T		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1676	MHD1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GCGTGAACTTCCTGCCTTCAA	0.353			NA											14	138					7.93312e-07	1.01249e-06	0.00245	1	0
IGDCC4	57722	broad.mit.edu	37	15	65682635	65682635	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:65682635C>T	uc002aou.1	-	13	2476	c.2266G>A	c.(2266-2268)GTC>ATC	p.V756I	IGDCC4_uc002aot.1_Missense_Mutation_p.V344I	NM_020962	NP_066013	Q8TDY8	IGDC4_HUMAN	immunoglobulin superfamily, DCC subclass, member	756	Fibronectin type-III 4.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(1)|pancreas(1)|skin(1)	3						TCCGCATGGACGTGGGCTGGA	0.498			NA											4	24					0	0	0.009096	0	0
CORO2B	10391	broad.mit.edu	37	15	69011757	69011757	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:69011757G>T	uc002arj.3	+	11	1206	c.1177G>T	c.(1177-1179)GTG>TTG	p.V393L	CORO2B_uc010bic.2_Missense_Mutation_p.V388L|CORO2B_uc002ark.2_Missense_Mutation_p.V160L	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	393					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						TTTAGATCCCGTGCTGATGTC	0.473			NA											5	103					3.59834e-05	4.21623e-05	0.001168	1	0
NOX5	79400	broad.mit.edu	37	15	69320705	69320705	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:69320705G>T	uc002ars.1	+	3	345	c.325G>T	c.(325-327)GTG>TTG	p.V109L	NOX5_uc002arp.1_Missense_Mutation_p.V91L|NOX5_uc002arq.1_Missense_Mutation_p.G91C|NOX5_uc010bid.1_Missense_Mutation_p.G102C|NOX5_uc002arr.1_Missense_Mutation_p.G109C|NOX5_uc010bie.1_5'UTR	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	109	Cytoplasmic (Potential).|EF-hand 3; atypical; contains an insert of 28 residues.|N-terminal regulatory region; interacts with the C-terminal catalytic region in a calcium-dependent manner.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						TGACATCGATGGTAAGGGCTC	0.597			NA											12	75					1.3612e-06	1.72463e-06	0.003163	1	0
MYO9A	4649	broad.mit.edu	37	15	72191281	72191281	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:72191281C>G	uc002atl.3	-	25	4036	c.3563G>C	c.(3562-3564)GGT>GCT	p.G1188A	MYO9A_uc010biq.2_Missense_Mutation_p.G808A|MYO9A_uc002atn.1_Missense_Mutation_p.G1169A|MYO9A_uc002atk.2_5'UTR|MYO9A_uc002atm.1_5'UTR	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1188	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						AGGGTCTGAACCCTGAATTTC	0.358			NA											7	182					0	0	0.00333	0	0
MYO9A	4649	broad.mit.edu	37	15	72191292	72191292	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:72191292C>A	uc002atl.3	-	25	4025	c.3552G>T	c.(3550-3552)CTG>CTT	p.L1184L	MYO9A_uc010biq.2_Silent_p.L804L|MYO9A_uc002atn.1_Silent_p.L1165L|MYO9A_uc002atk.2_5'UTR|MYO9A_uc002atm.1_5'UTR	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1184	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CCTGAATTTCCAGAGATCCAT	0.348			NA											12	191					7.01153e-11	1.03099e-10	0.007291	1	0
PARP6	56965	broad.mit.edu	37	15	72533888	72533888	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:72533888C>A	uc002auc.2	-	23	2260	c.1801G>T	c.(1801-1803)GGT>TGT	p.G601C	PARP6_uc002aua.2_Missense_Mutation_p.G447C|PARP6_uc002aub.2_RNA|PARP6_uc002aud.3_RNA	NM_020214	NP_064599	Q2NL67	PARP6_HUMAN	poly (ADP-ribose) polymerase family, member 6	601	PARP catalytic.						NAD+ ADP-ribosyltransferase activity				0						CCCACCTGACCATCCTCATAT	0.463			NA											6	38					3.59834e-05	4.21623e-05	0.001168	1	0
AP3B2	8120	broad.mit.edu	37	15	83328316	83328316	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:83328316T>A	uc010uoh.1	-	26	3422	c.3245A>T	c.(3244-3246)CAG>CTG	p.Q1082L	AP3B2_uc010uoi.1_Missense_Mutation_p.Q1101L|AP3B2_uc010uoj.1_Missense_Mutation_p.Q1050L|AP3B2_uc010bmp.2_Missense_Mutation_p.Q145L|AP3B2_uc010uog.1_Missense_Mutation_p.Q718L	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	1082					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TGGAAGTCACTGGGTCAGAGC	0.527			NA											11	52					0	0	0.001855	0	0
ZSCAN2	54993	broad.mit.edu	37	15	85165222	85165222	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:85165222C>A	uc002bkr.2	+	3	2022	c.1796C>A	c.(1795-1797)TCT>TAT	p.S599Y	ZSCAN2_uc010bmz.1_Missense_Mutation_p.S597Y|ZSCAN2_uc010bna.2_Missense_Mutation_p.S449Y|ZSCAN2_uc010uox.1_Intron|ZSCAN2_uc010uoy.1_Intron|ZSCAN2_uc010uoz.1_Intron	NM_181877	NP_870992	Q7Z7L9	ZSCA2_HUMAN	zinc finger protein 29 isoform 1	599	C2H2-type 14.				cell differentiation|multicellular organismal development|spermatogenesis|viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2				UCEC - Uterine corpus endometrioid carcinoma (272;0.168)|all cancers(203;5.43e-22)		AGCAACAGCTCTAACTTTATC	0.483			NA											12	68					0.00010058	0.000115011	0.001368	1	0
C15orf32	145858	broad.mit.edu	37	15	93016280	93016280	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr15:93016280C>T	uc002brc.1	+	2	944	c.472C>T	c.(472-474)CTT>TTT	p.L158F	C15orf32_uc010bod.1_RNA	NM_153040	NP_694585	Q32M92	CO032_HUMAN	hypothetical protein LOC145858	158										ovary(1)	1	Lung NSC(78;0.0893)|all_lung(78;0.125)		BRCA - Breast invasive adenocarcinoma(143;0.0493)|OV - Ovarian serous cystadenocarcinoma(32;0.125)			GAAGAGGCATCTTATGAGAGT	0.468			NA											10	79					0	0	0.008291	0	0
EME2	197342	broad.mit.edu	37	16	1826213	1826213	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:1826213G>C	uc002cmq.1	+	8	1309	c.1309G>C	c.(1309-1311)GAT>CAT	p.D437H	EME2_uc010brw.1_Missense_Mutation_p.D372H	NM_001010865	NP_001010865	A4GXA9	EME2_HUMAN	essential meiotic endonuclease 1 homolog 2	372					DNA recombination|DNA repair	nucleus	DNA binding|endonuclease activity			lung(1)|central_nervous_system(1)|pancreas(1)	3						AGCCAACCCTGATCTCCTGCT	0.692			NA						Direct_reversal_of_damage|Homologous_recombination					21	74					0	0	0.004656	0	0
TSC2	7249	broad.mit.edu	37	16	2110757	2110757	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:2110757G>T	uc002con.2	+	11	1168	c.1062G>T	c.(1060-1062)CAG>CAT	p.Q354H	TSC2_uc010bsd.2_Missense_Mutation_p.Q354H|TSC2_uc002coo.2_Missense_Mutation_p.Q354H|TSC2_uc010uvv.1_Missense_Mutation_p.Q317H|TSC2_uc010uvw.1_Missense_Mutation_p.Q305H|TSC2_uc002cop.2_Missense_Mutation_p.Q154H	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	354	Required for interaction with TSC1.				cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				AGGAGCTCCAGGTGGTGGCGT	0.602			NA	D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				21	80					2.4624e-09	3.48339e-09	0.008871	1	0
RNPS1	10921	broad.mit.edu	37	16	2312759	2312759	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:2312759G>A	uc002cpt.2	-	5	1050	c.504C>T	c.(502-504)CTC>CTT	p.L168L	RNPS1_uc002cpu.2_Silent_p.L168L|RNPS1_uc002cpv.2_5'UTR|RNPS1_uc002cpw.2_Silent_p.L168L|RNPS1_uc002cpx.2_Silent_p.L145L|RNPS1_uc010uwa.1_RNA	NM_080594	NP_542161	Q15287	RNPS1_HUMAN	RNA-binding protein S1, serine-rich domain	168	Necessary for interaction with PNN and exon-skipping.|Necessary for interaction with the cleaved p110 isoform of CDC2L1.|RRM.				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|termination of RNA polymerase II transcription	cytosol|nuclear speck	mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(1)	1						CATTCCGGGTGAGTCTCCCAA	0.502			NA											8	87					0	0	0.00308	0	0
PRSS27	83886	broad.mit.edu	37	16	2766520	2766520	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:2766520C>T	uc002crf.2	-	2	445	c.54G>A	c.(52-54)CAG>CAA	p.Q18Q	PRSS27_uc002cre.2_5'Flank|PRSS27_uc002crg.2_5'UTR|PRSS27_uc010bst.1_5'UTR	NM_031948	NP_114154	Q9BQR3	PRS27_HUMAN	marapsin precursor	18					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CCTTGGCCCTCTGAGACCCTG	0.662			NA											4	13					0	0	0.000602	0	0
MMP25	64386	broad.mit.edu	37	16	3100498	3100498	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:3100498C>T	uc002cth.2	+	4	849	c.612C>T	c.(610-612)TCC>TCT	p.S204S	MMP25_uc002cti.1_Silent_p.S140S	NM_022468	NP_071913	Q9NPA2	MMP25_HUMAN	matrix metalloproteinase 25 preproprotein	204					inflammatory response|proteolysis	anchored to membrane|cell surface|plasma membrane|proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding				0						ACCCCATCTCCGGGGACACTC	0.562	NSCLC(147;665 1067 3888 6863 19894 30469 40247 45633 51336)		NA											4	64					0	0	0.000602	0	0
ZNF597	146434	broad.mit.edu	37	16	3486959	3486959	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:3486959C>G	uc002cvd.2	-	4	924	c.740G>C	c.(739-741)AGA>ACA	p.R247T		NM_152457	NP_689670	Q96LX8	ZN597_HUMAN	zinc finger protein 597	247	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CATAAAACCTCTACCACATAT	0.448			NA											4	113					0	0	0.009096	0	0
TFAP4	7023	broad.mit.edu	37	16	4310163	4310163	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:4310163G>A	uc010uxg.1	-	6	1004	c.750C>T	c.(748-750)GTC>GTT	p.V250V		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	250					DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CCATGGTGACGACATTGATGT	0.622			NA											15	118					0	0	0.003163	0	0
PPL	5493	broad.mit.edu	37	16	4934045	4934045	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:4934045C>T	uc002cyd.1	-	22	4701	c.4611G>A	c.(4609-4611)GTG>GTA	p.V1537V		NM_002705	NP_002696	O60437	PEPL_HUMAN	periplakin	1537	Potential.				keratinization	cytoskeleton|desmosome|mitochondrion|nucleus	protein binding|structural constituent of cytoskeleton			ovary(4)|central_nervous_system(1)|skin(1)	6						CCAGCCGGCTCACCTCGACGT	0.572			NA											5	93					0	0	0.000602	0	0
PARN	5073	broad.mit.edu	37	16	14540932	14540932	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:14540932T>A	uc010uzd.1	-	23	1819	c.1677A>T	c.(1675-1677)ACA>ACT	p.T559T	PARN_uc010uzc.1_Silent_p.T498T|PARN_uc010uze.1_Silent_p.T513T|PARN_uc010uzf.1_Silent_p.T384T	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	559					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						TGCTGGGAGCTGTAAAACTGA	0.408			NA											7	44					0	0	0.00308	0	0
XYLT1	64131	broad.mit.edu	37	16	17211722	17211722	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:17211722C>T	uc002dfa.2	-	11	2423	c.2338G>A	c.(2338-2340)GTG>ATG	p.V780M		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	780	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						ATGACGGTCACGGTCACATTA	0.557			NA											8	65					0	0	0.00308	0	0
XYLT1	64131	broad.mit.edu	37	16	17232324	17232324	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:17232324C>A	uc002dfa.2	-	8	1737	c.1652G>T	c.(1651-1653)CGC>CTC	p.R551L		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	551	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GTTGGTGATGCGCAGGTTGTT	0.597			NA											8	51					7.48243e-07	9.59663e-07	0.006214	1	0
XYLT1	64131	broad.mit.edu	37	16	17294420	17294420	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:17294420G>T	uc002dfa.2	-	4	1090	c.1005C>A	c.(1003-1005)CAC>CAA	p.H335Q		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	335	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						AGGCACGGCCGTGGACCACCA	0.567			NA											29	132					1.39806e-14	2.22157e-14	0.008361	1	0
GP2	2813	broad.mit.edu	37	16	20329602	20329602	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:20329602C>A	uc002dgv.2	-	8	1250	c.1167G>T	c.(1165-1167)GGG>GGT	p.G389G	GP2_uc002dgw.2_Silent_p.G386G|GP2_uc002dgx.2_Silent_p.G242G|GP2_uc002dgy.2_Silent_p.G239G	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	389	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						GGGAGGTGTCCCCTTGTTCCA	0.502			NA											9	92					1.76689e-08	2.40187e-08	0.006214	1	0
PDILT	204474	broad.mit.edu	37	16	20373850	20373850	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:20373850C>T	uc002dhc.1	-	10	1515	c.1292G>A	c.(1291-1293)GGC>GAC	p.G431D		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	431	Thioredoxin.				cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						ATATTTTCTGCCCAATTCCTC	0.463			NA											8	51					0	0	0.00308	0	0
DNAH3	55567	broad.mit.edu	37	16	20946702	20946702	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:20946702T>C	uc010vbe.1	-	61	11965	c.11965A>G	c.(11965-11967)ATC>GTC	p.I3989V	DNAH3_uc010vbd.1_Missense_Mutation_p.I1424V	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3989					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCAATGGGGATGGTATATTTC	0.463			NA											4	98					0	0	0.009096	0	0
C16orf82	162083	broad.mit.edu	37	16	27078357	27078357	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:27078357G>T	uc010vcm.1	+	1	139	c.41G>T	c.(40-42)GGA>GTA	p.G14V		NM_001145545	NP_001139017	Q7Z2V1	TNT_HUMAN	hypothetical protein LOC162083	77											0						TTTCTCGAGGGAGAAAAAGGG	0.587			NA											5	28					3.59834e-05	4.21623e-05	0.001168	1	0
GTF3C1	2975	broad.mit.edu	37	16	27517247	27517247	+	Silent	SNP	G	G	A	rs35776875	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:27517247G>A	uc002dov.1	-	10	1783	c.1743C>T	c.(1741-1743)ATC>ATT	p.I581I	GTF3C1_uc002dou.2_Silent_p.I581I	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	581						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GGACCTCCTCGATCACAGCTA	0.542			NA											4	82					0	0	0.009096	0	0
CDIPT	10423	broad.mit.edu	37	16	29872528	29872528	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:29872528C>T	uc002dum.2	-	3	631	c.231G>A	c.(229-231)ATG>ATA	p.M77I	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CDIPT_uc002duk.2_Missense_Mutation_p.M101I|CDIPT_uc002dul.2_Missense_Mutation_p.M49I|CDIPT_uc002dun.2_Missense_Mutation_p.M32I|LOC440356_uc010veb.1_5'Flank|LOC440356_uc002duo.2_5'Flank	NM_006319	NP_006310	O14735	CDIPT_HUMAN	CDP-diacylglycerol-inositol	77	Helical; (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	CDP-diacylglycerol-inositol 3-phosphatidyltransferase activity|phosphatidylinositol transporter activity				0						CCAACAGGCACATGGTGGAGC	0.582			NA											3	30					0	0	0.004672	0	0
ITGAD	3681	broad.mit.edu	37	16	31427872	31427872	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:31427872G>T	uc002ebv.1	+	20	2453	c.2404G>T	c.(2404-2406)GTG>TTG	p.V802L	ITGAD_uc010cap.1_Missense_Mutation_p.V803L	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	802	Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CAACGTGATTGTGACTGTGTG	0.612			NA											17	69					6.94344e-10	9.93007e-10	0.006122	1	0
HEATR3	55027	broad.mit.edu	37	16	50118121	50118121	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:50118121G>T	uc002efw.2	+	9	1371	c.1209G>T	c.(1207-1209)GAG>GAT	p.E403D	HEATR3_uc002efx.2_Missense_Mutation_p.E317D	NM_182922	NP_891552	Q7Z4Q2	HEAT3_HUMAN	HEAT repeat containing 3	403							binding			ovary(1)|skin(1)	2						CCTTCAGTGAGTGCGGGGGAC	0.498			NA											17	50					1.37285e-15	2.23597e-15	0.004007	1	0
CYLD	1540	broad.mit.edu	37	16	50813643	50813643	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:50813643C>G	uc002egp.1	+	9	1621	c.1206C>G	c.(1204-1206)CTC>CTG	p.L402L	CYLD_uc002ego.2_Silent_p.L399L|CYLD_uc010cbs.1_Silent_p.L399L|CYLD_uc002egq.1_Silent_p.L399L|CYLD_uc002egr.1_Silent_p.L399L|CYLD_uc002egs.1_Silent_p.L399L	NM_015247	NP_056062	Q9NQC7	CYLD_HUMAN	ubiquitin carboxyl-terminal hydrolase CYLD	402	Interaction with TRAF2.|Interaction with TRIP.				cell cycle|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|protein K63-linked deubiquitination|regulation of microtubule cytoskeleton organization|regulation of mitotic cell cycle|translation|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway	cytosol|extrinsic to internal side of plasma membrane|microtubule|perinuclear region of cytoplasm|ribosome	proline-rich region binding|protein kinase binding|structural constituent of ribosome|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			skin(19)|large_intestine(3)|haematopoietic_and_lymphoid_tissue(3)|central_nervous_system(3)	28		all_cancers(37;0.0156)				CACCACCACTCCAGCCTCCTC	0.423			NA	Mis|N|F|S		cylindroma	cylindroma			Familial_Cylindromatosis|Multiple_Trichoepithelioma_Familial				17	210					0	0	0.007413	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53691404	53691404	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:53691404G>T	uc002ehp.2	-	13	1606	c.1542C>A	c.(1540-1542)AAC>AAA	p.N514K	RPGRIP1L_uc002eho.3_Missense_Mutation_p.N514K|RPGRIP1L_uc010vgy.1_Missense_Mutation_p.N514K|RPGRIP1L_uc010cbx.2_Missense_Mutation_p.N514K|RPGRIP1L_uc010vgz.1_Missense_Mutation_p.N514K	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a	514	Potential.				negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				TAATTAGCATGTTTCTTGTCT	0.318			NA											3	50					0.004672	0.00497711	0.004672	1	0
CES4	51716	broad.mit.edu	37	16	55803950	55803950	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:55803950A>G	uc002eik.2	+	4	525	c.74A>G	c.(73-75)CAT>CGT	p.H25R	CES4_uc010cce.2_Missense_Mutation_p.H25R	NR_003276				RecName: Full=Inactive carboxylesterase 4; AltName: Full=Placental carboxylesterase 3;          Short=PCE-3; Flags: Precursor;												0						CTTGCTGCCCATGAAAACGTG	0.567			NA											7	10					0	0	0.001984	0	0
MT2A	4502	broad.mit.edu	37	16	56642595	56642595	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:56642595G>T	uc002ejh.2	+	1	118	c.28G>T	c.(28-30)GGT>TGT	p.G10C	MT1A_uc002eji.2_RNA	NM_005953	NP_005944	P02795	MT2_HUMAN	metallothionein 2A	10	Beta.				cellular copper ion homeostasis|interferon-gamma-mediated signaling pathway		metal ion binding|protein binding				0						CTGCGCCGCCGGTAAGAGGCT	0.587			NA											10	56					4.3838e-07	5.6924e-07	0.001855	1	0
CDH8	1006	broad.mit.edu	37	16	61854915	61854915	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:61854915T>A	uc002eog.1	-	6	1190	c.938A>T	c.(937-939)TAT>TTT	p.Y313F	CDH8_uc002eoh.2_Missense_Mutation_p.Y82F	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	313	Extracellular (Potential).|Cadherin 3.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GATGATATCATATGATGACTG	0.438			NA											5	38					0	0	0.001168	0	0
DUS2L	54920	broad.mit.edu	37	16	68109352	68109352	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:68109352G>A	uc002evi.2	+	14	1176	c.1027G>A	c.(1027-1029)GGG>AGG	p.G343R	DUS2L_uc002evj.2_Missense_Mutation_p.G343R|DUS2L_uc010vkk.1_Missense_Mutation_p.G308R|DUS2L_uc010cez.2_Missense_Mutation_p.G256R	NM_017803	NP_060273	Q9NX74	DUS2L_HUMAN	dihydrouridine synthase 2-like, SMM1 homolog	343					tRNA processing	endoplasmic reticulum	double-stranded RNA binding|flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0131)|Epithelial(162;0.0564)		AGAGCAGACAGGGGAGCCAGC	0.582			NA											3	20					0	0	0.009096	0	0
VAC14	55697	broad.mit.edu	37	16	70796856	70796856	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:70796856C>A	uc002ezm.2	-	11	1491	c.1233G>T	c.(1231-1233)ACG>ACT	p.T411T	VAC14_uc010cfw.2_Silent_p.T177T|VAC14_uc002ezn.2_Intron|uc002ezp.1_Intron	NM_018052	NP_060522	Q08AM6	VAC14_HUMAN	Vac14 homolog	411					interspecies interaction between organisms	endoplasmic reticulum|endosome membrane|microsome	protein binding|receptor activity			pancreas(1)|skin(1)	2		Ovarian(137;0.0699)				TCCCAATGGCCGTGTCACTGA	0.582			NA											8	43					0.000274275	0.000304945	0.004482	1	0
FOXC2	2303	broad.mit.edu	37	16	86601202	86601202	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:86601202C>A	uc002fjq.2	+	1	346	c.261C>A	c.(259-261)AAC>AAA	p.N87K		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	87	Fork-head.				anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						CCATCCAGAACGCGCCCGAGA	0.612			NA							Late-onset_Hereditary_Lymphedema				6	98					3.59834e-05	4.21623e-05	0.001168	1	0
DPEP1	1800	broad.mit.edu	37	16	89696899	89696899	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:89696899G>A	uc010cin.2	+	2	284	c.81G>A	c.(79-81)ATG>ATA	p.M27I	DPEP1_uc002fnr.3_Missense_Mutation_p.M27I|DPEP1_uc002fns.3_Missense_Mutation_p.M27I	NM_001128141	NP_001121613	P16444	DPEP1_HUMAN	dipeptidase 1 precursor	27					proteolysis	anchored to membrane|apical plasma membrane|microvillus membrane	dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metalloexopeptidase activity|protein binding			large_intestine(1)	1		all_lung(18;0.0054)|all_hematologic(23;0.094)		BRCA - Breast invasive adenocarcinoma(80;0.0258)	Cilastatin(DB01597)	AGAGGATCATGAGGGACTCCC	0.522			NA											4	54					0	0	0.000602	0	0
TCF25	22980	broad.mit.edu	37	16	89958629	89958629	+	Nonsense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:89958629A>T	uc002fpb.2	+	6	725	c.643A>T	c.(643-645)AAG>TAG	p.K215*	TCF25_uc002fpc.2_5'UTR	NM_014972	NP_055787	Q9BQ70	TCF25_HUMAN	NULP1	215					heart development|negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(9;4.71e-08)|Lung NSC(15;0.000192)|all_lung(18;0.000319)|all_neural(9;0.0122)|all_hematologic(23;0.027)		BRCA - Breast invasive adenocarcinoma(80;0.0288)		TGTGTACCCCAAGTGCACATG	0.612			NA											4	16					0	0	0.000602	0	0
TUBB3	10381	broad.mit.edu	37	16	90001147	90001147	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:90001147G>C	uc002fph.1	+	4	353	c.288G>C	c.(286-288)GGG>GGC	p.G96G	TUBB3_uc002fpf.2_Silent_p.G443G|TUBB3_uc010ciz.1_Silent_p.G24G|TUBB3_uc002fpg.1_5'UTR|TUBB3_uc002fpi.1_Silent_p.G24G|TUBB3_uc002fpj.1_Silent_p.G24G|TUBB3_uc010cjb.1_5'UTR|TUBB3_uc002fpk.1_5'UTR	NM_006086	NP_006077	Q13509	TBB3_HUMAN	tubulin, beta, 4	96					'de novo' posttranslational protein folding|axon guidance|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(2)|pancreas(1)	3		all_cancers(9;1.69e-11)|Lung NSC(15;8.94e-06)|all_lung(18;1.39e-05)|all_neural(9;0.00581)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0273)		GTCAGAGTGGGGCCGGCAACA	0.632			NA											13	31					0	0	0.001855	0	0
SPNS3	201305	broad.mit.edu	37	17	4349344	4349344	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:4349344A>T	uc002fxt.2	+	4	448	c.404A>T	c.(403-405)TAT>TTT	p.Y135F	SPNS3_uc002fxu.2_Missense_Mutation_p.Y8F	NM_182538	NP_872344	Q6ZMD2	SPNS3_HUMAN	spinster homolog 3	135					lipid transport|transmembrane transport	integral to membrane				large_intestine(1)	1						CTCGCCCAGTATTCTTGGCTC	0.632			NA											11	34					0	0	0.003163	0	0
USP6	9098	broad.mit.edu	37	17	5051907	5051907	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:5051907C>A	uc002gau.1	+	30	4718	c.2488C>A	c.(2488-2490)CTA>ATA	p.L830I	USP6_uc002gav.1_Missense_Mutation_p.L830I|USP6_uc010ckz.1_Missense_Mutation_p.L513I	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	830					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						CAATGGGGACCTACCCAAACC	0.408			NA	T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								50	92					8.00217e-19	1.35401e-18	0.00361	1	0
CLEC10A	10462	broad.mit.edu	37	17	6978507	6978507	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:6978507C>G	uc002gek.2	-	9	1120	c.817G>C	c.(817-819)GGG>CGG	p.G273R	CLEC10A_uc002gej.2_Missense_Mutation_p.G249R|CLEC10A_uc002gel.2_Missense_Mutation_p.G246R|CLEC10A_uc010clv.1_3'UTR	NM_182906	NP_878910	Q8IUN9	CLC10_HUMAN	C-type lectin, superfamily member 14 isoform 1	273	C-type lectin.|Extracellular (Potential).				endocytosis|innate immune response	integral to membrane|plasma membrane	sugar binding				0						AGCCCGTGCCCCTGCCAGTCG	0.602			NA											12	28					0	0	0.001368	0	0
CHRNB1	1140	broad.mit.edu	37	17	7358658	7358658	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:7358658G>C	uc002ghb.2	+	9	1141	c.1100G>C	c.(1099-1101)AGA>ACA	p.R367T	CHRNB1_uc010vty.1_Missense_Mutation_p.R295T|CHRNB1_uc010vtz.1_Missense_Mutation_p.R201T	NM_000747	NP_000738	P11230	ACHB_HUMAN	nicotinic acetylcholine receptor beta 1 subunit	367	Cytoplasmic (Potential).				behavioral response to nicotine|muscle contraction|muscle fiber development|neuromuscular synaptic transmission|postsynaptic membrane organization|regulation of membrane potential|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine binding|receptor activity			ovary(2)	2		Prostate(122;0.157)				AAACCCGAGAGAGACCTGATG	0.522			NA											4	153					0	0	0.009096	0	0
TP53	7157	broad.mit.edu	37	17	7578268	7578268	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:7578268A>C	uc002gim.2	-	6	775	c.581T>G	c.(580-582)CTT>CGT	p.L194R	TP53_uc002gig.1_Missense_Mutation_p.L194R|TP53_uc002gih.2_Missense_Mutation_p.L194R|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.L62R|TP53_uc010cng.1_Missense_Mutation_p.L62R|TP53_uc002gii.1_Missense_Mutation_p.L62R|TP53_uc010cnh.1_Missense_Mutation_p.L194R|TP53_uc010cni.1_Missense_Mutation_p.L194R|TP53_uc002gij.2_Missense_Mutation_p.L194R|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Missense_Mutation_p.L101R|TP53_uc002gio.2_Missense_Mutation_p.L62R|TP53_uc010vug.1_Missense_Mutation_p.L155R	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	194	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		L -> H (in sporadic cancers; somatic mutation).|L -> R (in sporadic cancers; somatic mutation).|L -> I (in sporadic cancers; somatic mutation).|L -> F (in sporadic cancers; somatic mutation).|L -> P (in sporadic cancers; somatic mutation).|L -> V (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.L194R(31)|p.L194F(16)|p.L194P(8)|p.0?(7)|p.L194H(5)|p.L194L(4)|p.A189_V197delAPPQHLIRV(4)|p.P191fs*53(2)|p.L194fs*15(2)|p.K164_P219del(1)|p.A189fs*53(1)|p.L194V(1)|p.L194fs*14(1)|p.P191fs*6(1)|p.I195fs*52(1)|p.H193_I195delHLI(1)|p.H193_I195>AP(1)|p.L194I(1)|p.L194fs*52(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CACTCGGATAAGATGCTGAGG	0.552	Pancreas(47;798 1329 9957 10801)		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			24	33					0	0	0.004656	0	0
ARHGEF15	22899	broad.mit.edu	37	17	8222414	8222414	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:8222414G>T	uc002glc.2	+	13	2244	c.2123G>T	c.(2122-2124)CGC>CTC	p.R708L	ARHGEF15_uc002gld.2_Missense_Mutation_p.R708L|ARHGEF15_uc010vuw.1_Missense_Mutation_p.R597L	NM_173728	NP_776089	O94989	ARHGF_HUMAN	Rho guanine exchange factor 15	708					negative regulation of synapse maturation|regulation of Rho protein signal transduction	dendrite|intracellular	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(2)|skin(1)	3						CCTACCTTCCGCCTCTCCCTT	0.607			NA											35	63					1.36161e-19	2.33037e-19	0.004289	1	0
PIK3R6	146850	broad.mit.edu	37	17	8731893	8731893	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:8731893T>C	uc002glq.1	-	11	1544	c.1304A>G	c.(1303-1305)CAC>CGC	p.H435R	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	435					platelet activation	cytosol					0						CCTGAGTCTGTGGTAGGCCTG	0.701			NA											5	19					0	0	0.001168	0	0
WDR16	146845	broad.mit.edu	37	17	9501631	9501631	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:9501631G>C	uc002gly.2	+	5	686	c.617G>C	c.(616-618)AGA>ACA	p.R206T	WDR16_uc002glz.2_Missense_Mutation_p.R138T|WDR16_uc010coc.2_Missense_Mutation_p.R216T	NM_145054	NP_659491	Q8N1V2	WDR16_HUMAN	WD40-repeat protein upregulated in HCC isoform	206						cytoplasm|intracellular membrane-bounded organelle	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4						CAGTTGAAAAGAATAGTCATG	0.358			NA											7	72					0	0	0.00308	0	0
NCOR1	9611	broad.mit.edu	37	17	16004785	16004785	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:16004785G>A	uc002gpo.2	-	20	2709	c.2469C>T	c.(2467-2469)GAC>GAT	p.D823D	NCOR1_uc002gpn.2_Silent_p.D839D|NCOR1_uc002gpp.1_Silent_p.D730D|NCOR1_uc002gpr.2_Silent_p.D730D	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	823					cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TCACTTCAACGTCCACAGAGT	0.493			NA											7	78					0	0	0.001984	0	0
TNFRSF13B	23495	broad.mit.edu	37	17	16855818	16855818	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:16855818G>A	uc002gqs.1	-	2	154	c.141C>T	c.(139-141)TGC>TGT	p.C47C	TNFRSF13B_uc010vwt.1_Intron|TNFRSF13B_uc002gqt.1_Intron|TNFRSF13B_uc010vwu.1_Silent_p.C47C	NM_012452	NP_036584	O14836	TR13B_HUMAN	tumor necrosis factor receptor 13B	47	TNFR-Cys 1.|Extracellular (Potential).				cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding|receptor activity			kidney(2)	2						TGCAGGACATGCAGGTACCCA	0.597			NA							IgA_Deficiency_Selective				7	35					0	0	0.001984	0	0
PLD6	201164	broad.mit.edu	37	17	17106395	17106395	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:17106395C>T	uc002gqz.2	-	2	477	c.445G>A	c.(445-447)GAT>AAT	p.D149N	PLD6_uc010cpn.2_RNA	NM_178836	NP_849158	Q8N2A8	PLD6_HUMAN	phospholipase D6	149	Cytoplasmic (Potential).				DNA methylation involved in gamete generation|lipid catabolic process|meiosis|mitochondrial fusion|P granule organization|piRNA metabolic process|spermatid development	integral to membrane|mitochondrial outer membrane	cardiolipin hydrolase activity|protein homodimerization activity				0						GGGTCTTGATCGTGCCGGACC	0.557			NA											4	36					0	0	0.009096	0	0
KCNJ12	3768	broad.mit.edu	37	17	21318835	21318835	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:21318835G>A	uc002gyv.1	+	3	886	c.181G>A	c.(181-183)GAC>AAC	p.D61N		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	61	Cytoplasmic (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	CGCCAACATGGACGAGAAGTC	0.597			NA								Prostate(3;0.18)			9	42					0	0	0.004482	0	0
SEZ6	124925	broad.mit.edu	37	17	27308745	27308745	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:27308745G>A	uc002hdp.2	-	2	562	c.368C>T	c.(367-369)ACT>ATT	p.T123I	SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.T123I|SEZ6_uc002hdq.1_5'UTR|SEZ6_uc010crz.1_Missense_Mutation_p.T123I	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	123	Pro-rich.|Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			CATGGCTGGAGTGGGGCTGGT	0.647			NA											14	50					0	0	0.004007	0	0
MYO18A	399687	broad.mit.edu	37	17	27493181	27493181	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:27493181C>A	uc002hdt.1	-	2	936	c.778G>T	c.(778-780)GGT>TGT	p.G260C	MYO18A_uc010csa.1_Missense_Mutation_p.G260C|MYO18A_uc002hdu.1_Missense_Mutation_p.G260C	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	260	PDZ.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			GTGCCTGCACCAGGCTCAGCA	0.627	Esophageal Squamous(182;472 2015 7001 15270 22562)		NA											73	153					3.82405e-32	6.82446e-32	0.00361	1	0
CORO6	84940	broad.mit.edu	37	17	27945929	27945929	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:27945929T>A	uc002hel.2	-	4	514	c.512A>T	c.(511-513)GAT>GTT	p.D171V	CORO6_uc002hem.2_5'Flank|CORO6_uc002hen.2_5'Flank	NM_032854	NP_116243	Q6QEF8	CORO6_HUMAN	coronin 6	171					actin cytoskeleton organization	actin cytoskeleton	actin filament binding				0						GTGCATATCATCCAGGCTCAG	0.587			NA											26	56					0	0	0.007291	0	0
NF1	4763	broad.mit.edu	37	17	29670033	29670033	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:29670033G>T	uc002hgg.2	+	48	7402	c.7069G>T	c.(7069-7071)GAG>TAG	p.E2357*	NF1_uc002hgh.2_Nonsense_Mutation_p.E2336*|NF1_uc010cso.2_Nonsense_Mutation_p.E545*|NF1_uc010wbt.1_5'UTR|NF1_uc010wbu.1_RNA	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	2357			E -> K (in NF1).		actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATAGAGTCCAGAGGAAGTATT	0.363			NA	D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			22	64					1.10513e-12	1.6967e-12	0.002299	1	0
SLFN11	91607	broad.mit.edu	37	17	33687322	33687322	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:33687322G>T	uc010ctp.2	-	5	1580	c.1138C>A	c.(1138-1140)CCA>ACA	p.P380T	SLFN11_uc010ctq.2_Missense_Mutation_p.P380T|SLFN11_uc002hjh.3_Missense_Mutation_p.P380T|SLFN11_uc002hjg.3_Missense_Mutation_p.P380T|SLFN11_uc010ctr.2_Missense_Mutation_p.P380T	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	380						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAGTACACTGGTCTGCTAAGG	0.393			NA											28	83					7.41945e-09	1.03004e-08	0.005443	1	0
GGNBP2	79893	broad.mit.edu	37	17	34935847	34935847	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:34935847G>C	uc002hnb.2	+	8	1267	c.1018G>C	c.(1018-1020)GAG>CAG	p.E340Q	GGNBP2_uc002hna.2_Missense_Mutation_p.E340Q|GGNBP2_uc002hnc.1_Missense_Mutation_p.E169Q	NM_024835	NP_079111	Q9H3C7	GGNB2_HUMAN	zinc finger protein 403	340					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasmic membrane-bounded vesicle				ovary(2)	2		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0193)		CAAGAGTTTTGAGGTAAGAAC	0.443			NA											6	131					0	0	0.001984	0	0
DDX52	11056	broad.mit.edu	37	17	35980934	35980934	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:35980934T>A	uc002hoi.1	-	12	1599	c.1561A>T	c.(1561-1563)AAG>TAG	p.K521*	DDX52_uc002hoh.1_Nonsense_Mutation_p.K413*	NM_007010	NP_008941	Q9Y2R4	DDX52_HUMAN	ATP-dependent RNA helicase ROK1 isoform a	521	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|skin(1)	2		Breast(25;0.00637)|Ovarian(249;0.15)				AATAATGGCTTATCATCCTCA	0.299			NA											10	45					0	0	0.008291	0	0
MED1	5469	broad.mit.edu	37	17	37595433	37595433	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:37595433A>G	uc002hrv.3	-	6	625	c.413T>C	c.(412-414)CTT>CCT	p.L138P	MED1_uc010wee.1_5'UTR|MED1_uc002hru.2_Missense_Mutation_p.L138P	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	138	Interaction with ESR1.|Interaction with the Mediator complex.|Interaction with the Mediator complex and THRA.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		CTGCTGTACAAGCTCCGGACA	0.348	Pancreas(21;279 768 2492 4877 24026)		NA								HNSCC(31;0.082)			19	112					0	0	0.003954	0	0
KRT38	8687	broad.mit.edu	37	17	39596834	39596834	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:39596834G>C	uc002hwq.1	-	1	763	c.340C>G	c.(340-342)CGC>GGC	p.R114G		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	114	Coil 1A.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				TTGGCCAGGCGGTCATTCAGG	0.582			NA											37	101					0	0	0.004878	0	0
STAT5A	6776	broad.mit.edu	37	17	40452733	40452733	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:40452733G>A	uc002hzj.1	+	9	1476	c.834G>A	c.(832-834)TGG>TGA	p.W278*	STAT5A_uc010cya.1_Nonsense_Mutation_p.W278*|STAT5A_uc010cyb.1_Nonsense_Mutation_p.W278*|STAT5A_uc010cyc.1_Nonsense_Mutation_p.W248*	NM_003152	NP_003143	P42229	STA5A_HUMAN	signal transducer and activator of transcription	278					2-oxoglutarate metabolic process|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|fatty acid metabolic process|isoleucine metabolic process|oxaloacetate metabolic process|succinate metabolic process|taurine metabolic process|valine metabolic process	cytosol|nucleoplasm	calcium ion binding|DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			lung(1)	1		all_cancers(22;1.56e-06)|all_epithelial(22;3.17e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.128)		TCTCGTGCAGGTGTGAGAAGT	0.637			NA											6	44					0	0	0.004482	0	0
AOC2	314	broad.mit.edu	37	17	40997147	40997147	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:40997147G>A	uc002ibu.2	+	1	539	c.504G>A	c.(502-504)CTG>CTA	p.L168L	AOC2_uc002ibt.2_Silent_p.L168L	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	168					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		GCCCGGTGCTGAGAGCTGAGT	0.612			NA											4	61					0	0	0.009096	0	0
BRCA1	672	broad.mit.edu	37	17	41243499	41243499	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:41243499C>G	uc002icq.2	-	10	4281	c.4049G>C	c.(4048-4050)GGC>GCC	p.G1350A	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.G1279A|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.G1303A|BRCA1_uc002ict.2_Missense_Mutation_p.G1350A|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.G1350A|BRCA1_uc002ide.1_Missense_Mutation_p.G1181A|BRCA1_uc010cyy.1_Missense_Mutation_p.G1350A|BRCA1_uc010whs.1_Missense_Mutation_p.G1350A|BRCA1_uc010cyz.2_Missense_Mutation_p.G1303A|BRCA1_uc010cza.2_Missense_Mutation_p.G1324A|BRCA1_uc010wht.1_Missense_Mutation_p.G1054A	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1350					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TTCTTCCAAGCCCGTTCCTCT	0.408			NA	D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			31	83					0	0	0.010818	0	0
SOST	50964	broad.mit.edu	37	17	41832830	41832830	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:41832830G>T	uc002iec.1	-	2	569	c.522C>A	c.(520-522)CAC>CAA	p.H174Q		NM_025237	NP_079513	Q9BQB4	SOST_HUMAN	sclerostin precursor	174					negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of ossification|negative regulation of protein complex assembly|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway		heparin binding|protein binding				0		Breast(137;0.00725)		UCEC - Uterine corpus endometrioid carcinoma (308;0.177)|BRCA - Breast invasive adenocarcinoma(366;0.0741)		CCGACTGGTTGTGGAAGCGGG	0.736			NA											7	64					0.000157383	0.000178208	0.00308	1	0
ADAM11	4185	broad.mit.edu	37	17	42855137	42855137	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:42855137T>C	uc002ihh.2	+	23	1976	c.1976T>C	c.(1975-1977)ATG>ACG	p.M659T	ADAM11_uc010wjd.1_Missense_Mutation_p.M459T|ADAM11_uc002ihi.2_Missense_Mutation_p.C12R	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	659	Cys-rich.|Extracellular (Potential).				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GGGCCTAACATGTTGTGCCTG	0.647			NA											9	45					0	0	0.004482	0	0
ADAM11	4185	broad.mit.edu	37	17	42855212	42855212	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:42855212G>A	uc002ihh.2	+	23	2051	c.2051G>A	c.(2050-2052)CGG>CAG	p.R684Q	ADAM11_uc010wjd.1_Missense_Mutation_p.R484Q|ADAM11_uc002ihi.2_Missense_Mutation_p.G37R	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	684	EGF-like.|Extracellular (Potential).				integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				GGGGAGCGCCGGATTTGCTCC	0.657			NA											11	51					0	0	0.010729	0	0
KIF18B	146909	broad.mit.edu	37	17	43013481	43013481	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:43013481C>A	uc010wji.1	-	2	333	c.232G>T	c.(232-234)GAG>TAG	p.E78*	KIF18B_uc002iht.2_Nonsense_Mutation_p.E78*|KIF18B_uc010wjh.1_Nonsense_Mutation_p.E78*	NM_001080443	NP_001073912			kinesin family member 18B											ovary(2)	2		Prostate(33;0.155)				GTGGCCGCCTCGCCAAAGACC	0.612			NA											8	45					7.48243e-07	9.59663e-07	0.006214	1	0
HEXIM1	10614	broad.mit.edu	37	17	43227518	43227518	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:43227518C>T	uc002iig.2	+	1	2835	c.961C>T	c.(961-963)CGT>TGT	p.R321C		NM_006460	NP_006451	O94992	HEXI1_HUMAN	hexamethylene bis-acetamide inducible 1	321	Potential.|Required for inhibition of ESR1-dependent transcription.				negative regulation of cyclin-dependent protein kinase activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	cyclin-dependent protein kinase inhibitor activity|protein binding|snRNA binding			ovary(1)	1						CGACGACGCGCGTGTGCGGGA	0.672			NA											24	87					0	0	0.007291	0	0
SCRN2	90507	broad.mit.edu	37	17	45915787	45915787	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:45915787A>G	uc002imd.2	-	7	1094	c.968T>C	c.(967-969)ATG>ACG	p.M323T	SCRN2_uc002imc.2_Missense_Mutation_p.M331T|SCRN2_uc002imf.2_Missense_Mutation_p.M323T|SCRN2_uc002ime.2_RNA	NM_138355	NP_612364	Q96FV2	SCRN2_HUMAN	secernin 2 isoform 1	323					proteolysis		dipeptidase activity			ovary(1)	1						GGCCACCCCCATCCCGAAGAT	0.582			NA											7	143					0	0	0.010729	0	0
HOXB9	3219	broad.mit.edu	37	17	46703206	46703206	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:46703206C>A	uc002inx.2	-	1	630	c.426G>T	c.(424-426)GCG>GCT	p.A142A		NM_024017	NP_076922	P17482	HXB9_HUMAN	homeobox B9	142					canonical Wnt receptor signaling pathway|cell chemotaxis	mitochondrion|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCTCCCTGCCCGCCGAAGTTT	0.612			NA											9	76					0.000978159	0.00106486	0.010729	1	0
FAM117A	81558	broad.mit.edu	37	17	47794983	47794983	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:47794983C>A	uc002ipk.2	-	6	871	c.802G>T	c.(802-804)GCC>TCC	p.A268S	FAM117A_uc010wlz.1_5'UTR	NM_030802	NP_110429	Q9C073	F117A_HUMAN	family with sequence similarity 117, member A	268										ovary(1)	1						GGAGAGCTGGCAAGGTTGCCA	0.632			NA											19	51					0.000958276	0.0010443	0.007413	1	0
KIF2B	84643	broad.mit.edu	37	17	51901063	51901063	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:51901063C>G	uc002iua.2	+	1	825	c.669C>G	c.(667-669)CTC>CTG	p.L223L	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	223	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						AGCGGCCTCTCAACCAGCGAG	0.552			NA											12	42					0	0	0.001368	0	0
SEPT4	5414	broad.mit.edu	37	17	56602523	56602523	+	Missense_Mutation	SNP	A	A	G	rs112657072		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:56602523A>G	uc002iwm.1	-	5	706	c.578T>C	c.(577-579)GTG>GCG	p.V193A	SEPT4_uc002iwk.1_Missense_Mutation_p.V46A|SEPT4_uc010wnw.1_Missense_Mutation_p.V46A|SEPT4_uc002iwl.1_Missense_Mutation_p.V46A|SEPT4_uc002iwn.1_Missense_Mutation_p.V94A|SEPT4_uc002iwo.1_Missense_Mutation_p.V174A|SEPT4_uc002iwp.1_Missense_Mutation_p.V174A|SEPT4_uc010wnx.1_Missense_Mutation_p.V208A|SEPT4_uc010wny.1_Missense_Mutation_p.V185A|SEPT4_uc010dcy.1_Missense_Mutation_p.V75A	NM_004574	NP_004565	O43236	SEPT4_HUMAN	septin 4 isoform 1	193					apoptosis|cell cycle|cytokinesis|regulation of apoptosis	cytoskeleton|mitochondrion|nucleus	GTP binding|GTPase activity|protein binding|structural molecule activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TTCTATGTCCACTGCATGCTT	0.537			NA											25	180					0	0	0.00333	0	0
TEX14	56155	broad.mit.edu	37	17	56676440	56676440	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:56676440C>G	uc010dcz.1	-	14	2402	c.2284G>C	c.(2284-2286)GAT>CAT	p.D762H	TEX14_uc002iwr.1_Missense_Mutation_p.D756H|TEX14_uc002iws.1_Missense_Mutation_p.D756H|TEX14_uc010dda.1_Missense_Mutation_p.D536H	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	762	Potential.					cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					TCGACTTCATCTAATATCTGC	0.433			NA											51	116					0	0	0.00361	0	0
APPBP2	10513	broad.mit.edu	37	17	58539393	58539393	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:58539393C>A	uc002iys.1	-	7	1080	c.792G>T	c.(790-792)AAG>AAT	p.K264N	APPBP2_uc010ddl.1_Missense_Mutation_p.K193N	NM_006380	NP_006371	Q92624	APBP2_HUMAN	amyloid beta precursor protein-binding protein	264					intracellular protein transport	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|nucleus	microtubule motor activity|protein binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.67e-13)|all cancers(12;1.44e-11)|Colorectal(3;0.01)			ACTGTTCTGCCTTCTTAAATT	0.284			NA											27	193					1.80694e-10	2.63471e-10	0.009535	1	0
CACNG5	27091	broad.mit.edu	37	17	64875131	64875131	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:64875131C>T	uc010wqi.1	+	3	475	c.238C>T	c.(238-240)CCC>TCC	p.P80S	CACNG5_uc002jfr.2_Missense_Mutation_p.P80S|CACNG5_uc010wqj.1_Missense_Mutation_p.P80S	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	80					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			ATATGTGATGCCCATGAACAC	0.527			NA											26	84					0	0	0.010818	0	0
HELZ	9931	broad.mit.edu	37	17	65197255	65197255	+	Nonsense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:65197255G>C	uc010wqk.1	-	7	606	c.419C>G	c.(418-420)TCA>TGA	p.S140*	HELZ_uc002jfv.3_RNA|HELZ_uc002jfx.3_Nonsense_Mutation_p.S140*|HELZ_uc010des.1_Nonsense_Mutation_p.S140*	NM_014877	NP_055692			helicase with zinc finger domain											ovary(1)|pancreas(1)	2	all_cancers(12;1.24e-11)|Breast(2;1.05e-17)|all_epithelial(3;3.87e-13)					CTCTGTTTCTGAGAGAAGTGT	0.343			NA									OREG0024677	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	153					0	0	0.001168	0	0
BPTF	2186	broad.mit.edu	37	17	65822303	65822303	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:65822303A>G	uc002jgf.2	+	1	524	c.463A>G	c.(463-465)ACC>GCC	p.T155A	BPTF_uc002jge.2_Missense_Mutation_p.T155A|BPTF_uc010wqm.1_Missense_Mutation_p.T155A	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	155	Glu-rich.|Asp-rich.				brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CGCCGAGGAGACCCAGGATTC	0.423			NA											3	38					0	0	0.009096	0	0
ABCA8	10351	broad.mit.edu	37	17	66871472	66871472	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:66871472C>G	uc002jhp.2	-	35	4619	c.4440G>C	c.(4438-4440)AAG>AAC	p.K1480N	ABCA8_uc002jhq.2_Missense_Mutation_p.K1520N|ABCA8_uc010wqq.1_Missense_Mutation_p.K1515N	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1480						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GTGCCAGGTTCTTCACCTTCA	0.488			NA											7	72					0	0	0.004482	0	0
ABCA10	10349	broad.mit.edu	37	17	67189378	67189378	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:67189378T>C	uc010dfa.1	-	16	2532	c.1653A>G	c.(1651-1653)CTA>CTG	p.L551L	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_Silent_p.L152L	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	551	ABC transporter 1.				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					TTGGTTCATCTAGCAGCAAAA	0.443			NA											4	83					0	0	0.009096	0	0
KCNJ16	3773	broad.mit.edu	37	17	68129006	68129006	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:68129006G>C	uc002jin.2	+	5	1264	c.778G>C	c.(778-780)GAG>CAG	p.E260Q	KCNJ16_uc002jio.2_Missense_Mutation_p.E260Q|KCNJ16_uc002jip.2_Missense_Mutation_p.E260Q|KCNJ16_uc002jiq.2_Missense_Mutation_p.E292Q	NM_018658	NP_061128	Q9NPI9	IRK16_HUMAN	potassium inwardly-rectifying channel J16	260	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)|central_nervous_system(1)|skin(1)	3	Breast(10;2.96e-09)					AATTGACCATGAGAGCCCTCT	0.438			NA											11	227					0	0	0.008291	0	0
RAB37	326624	broad.mit.edu	37	17	72739292	72739292	+	Missense_Mutation	SNP	C	C	T	rs148960641		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:72739292C>T	uc002jlk.2	+	4	327	c.271C>T	c.(271-273)CGG>TGG	p.R91W	RAB37_uc002jlc.2_Missense_Mutation_p.R84W|RAB37_uc010dfu.2_Missense_Mutation_p.R84W|RAB37_uc002jld.2_Missense_Mutation_p.R84W|RAB37_uc010wrb.1_Missense_Mutation_p.R59W|RAB37_uc010wrc.1_Missense_Mutation_p.R96W|RAB37_uc010wrd.1_Missense_Mutation_p.R59W|RAB37_uc010wre.1_Missense_Mutation_p.R54W|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	91					protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						TGGGCAGGAACGGTTCCGAAG	0.597			NA											6	134					0	0	0.001168	0	0
ARMC7	79637	broad.mit.edu	37	17	73106466	73106466	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:73106466A>T	uc002jmw.1	+	1	385	c.83A>T	c.(82-84)CAA>CTA	p.Q28L	ARMC7_uc002jmv.1_Missense_Mutation_p.Q28L|ARMC7_uc010wru.1_Missense_Mutation_p.Q28L	NM_024585	NP_078861	Q9H6L4	ARMC7_HUMAN	armadillo repeat containing 7	28							binding			pancreas(1)	1	all_lung(278;0.14)|Lung NSC(278;0.168)		LUSC - Lung squamous cell carcinoma(166;0.162)|Lung(188;0.235)			CAGGAGACCCAAAGCCAAGGT	0.677			NA											13	63					0	0	0.00245	0	0
GGA3	23163	broad.mit.edu	37	17	73238543	73238543	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:73238543C>T	uc002jni.1	-	8	630	c.621G>A	c.(619-621)CGG>CGA	p.R207R	GGA3_uc002jnj.1_Silent_p.R174R|GGA3_uc010wrw.1_Silent_p.R85R|GGA3_uc002jnk.1_Silent_p.R135R|GGA3_uc010wrx.1_Silent_p.R85R|GGA3_uc010wry.1_Silent_p.R135R|GGA3_uc010wrz.1_3'UTR	NM_138619	NP_619525	Q9NZ52	GGA3_HUMAN	ADP-ribosylation factor binding protein 3	207	GAT.|Binds to ARF1 (in long isoform).				intracellular protein transport|vesicle-mediated transport	clathrin adaptor complex|endosome membrane|trans-Golgi network	ADP-ribosylation factor binding			ovary(1)|breast(1)	2			all cancers(21;2.39e-06)|Epithelial(20;2.38e-05)			CCTTCTGGATCCGTGCCTCGT	0.512			NA											19	189					0	0	0.006122	0	0
RECQL5	9400	broad.mit.edu	37	17	73627074	73627074	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:73627074A>T	uc010dgl.2	-	11	1721	c.1565T>A	c.(1564-1566)ATA>AAA	p.I522K	RECQL5_uc010dgk.2_Missense_Mutation_p.I495K|RECQL5_uc002jot.3_5'Flank|LOC643008_uc002jow.2_5'Flank	NM_004259	NP_004250	O94762	RECQ5_HUMAN	RecQ protein-like 5 isoform 1	522					DNA recombination|DNA repair	cytoplasm|nuclear membrane|nucleolus|nucleoplasm	ATP binding|ATP-dependent helicase activity|DNA helicase activity|nucleic acid binding			kidney(3)	3	all_cancers(13;2.73e-08)|Breast(9;6.04e-09)|all_epithelial(9;6.79e-09)		all cancers(21;1.15e-06)|Epithelial(20;2.19e-06)|Lung(188;0.101)|LUSC - Lung squamous cell carcinoma(166;0.112)			AAATTCTTCTATCTTGGGGTC	0.592			NA						Other_identified_genes_with_known_or_suspected_DNA_repair_function					12	40					0	0	0.010729	0	0
SAP30BP	29115	broad.mit.edu	37	17	73663513	73663513	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:73663513G>C	uc002jpe.2	+	1	115	c.61G>C	c.(61-63)GAG>CAG	p.E21Q	RECQL5_uc010dgk.2_5'Flank|RECQL5_uc010dgl.2_5'Flank|RECQL5_uc002jpb.1_5'Flank|RECQL5_uc002joz.3_5'Flank|RECQL5_uc002jpa.3_5'Flank|SAP30BP_uc010dgm.1_Missense_Mutation_p.E21Q|SAP30BP_uc002jpc.1_RNA|SAP30BP_uc010wsf.1_RNA|SAP30BP_uc010wsg.1_RNA|SAP30BP_uc002jpf.2_Missense_Mutation_p.E21Q	NM_013260	NP_037392	Q9UHR5	S30BP_HUMAN	transcriptional regulator protein	21					apoptosis|induction of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1	all_cancers(13;6.42e-08)		all cancers(21;4.25e-07)|Epithelial(20;9.57e-07)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TTCAGAGCCCGAGTCTGATGG	0.607			NA											6	74					0	0	0.00308	0	0
WBP2	23558	broad.mit.edu	37	17	73851355	73851355	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:73851355C>T	uc002jps.2	-	1	147	c.24G>A	c.(22-24)TCG>TCA	p.S8S	WBP2_uc002jpr.2_5'UTR|WBP2_uc010wsl.1_5'UTR|WBP2_uc002jpt.2_Silent_p.S8S|WBP2_uc002jpu.1_RNA|WBP2_uc010wsm.1_Silent_p.S8S|WBP2_uc010wsn.1_Silent_p.S8S	NM_012478	NP_036610	Q969T9	WBP2_HUMAN	WW domain binding protein 2	8	GRAM.						protein binding				0			all cancers(21;2.61e-06)|Epithelial(20;2.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			CGCCGCCCTCCGAGTGATTCT	0.592			NA											23	240					0	0	0.00333	0	0
SMCHD1	23347	broad.mit.edu	37	18	2674057	2674057	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:2674057A>G	uc002klm.3	+	5	740	c.551A>G	c.(550-552)GAT>GGT	p.D184G		NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	184					chromosome organization		ATP binding				0						GCAGTGATAGATAATGGAAGA	0.353			NA											3	21					0	0	0.004672	0	0
LPIN2	9663	broad.mit.edu	37	18	2922155	2922155	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:2922155G>T	uc002klo.2	-	17	2456	c.2217C>A	c.(2215-2217)GGC>GGA	p.G739G		NM_014646	NP_055461	Q92539	LPIN2_HUMAN	lipin 2	739	C-LIP.				fatty acid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent|triglyceride biosynthetic process	cytosol|endoplasmic reticulum membrane|nucleus	phosphatidate phosphatase activity|transcription coactivator activity			ovary(1)|skin(1)	2				READ - Rectum adenocarcinoma(2;0.0419)|Colorectal(6;0.156)		TGTCGGCCATGCCGATGGCAC	0.552			NA											10	41					9.70103e-10	1.3817e-09	0.008291	1	0
ARHGAP28	79822	broad.mit.edu	37	18	6882188	6882188	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:6882188A>G	uc010wzi.1	+	10	1050	c.812A>G	c.(811-813)GAC>GGC	p.D271G	ARHGAP28_uc002knc.2_Missense_Mutation_p.D396G|ARHGAP28_uc002knd.2_Missense_Mutation_p.D289G|ARHGAP28_uc002kne.2_Missense_Mutation_p.D289G|ARHGAP28_uc002knf.2_Missense_Mutation_p.D280G			B4DXL2	B4DXL2_HUMAN	SubName: Full=Putative uncharacterized protein ARHGAP28;	271					signal transduction	intracellular				pancreas(1)	1		Colorectal(10;0.168)				TTTAAATGGGACAAAATGTGC	0.393			NA											4	86					0	0	0.000602	0	0
LRRC30	339291	broad.mit.edu	37	18	7231306	7231306	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:7231306C>T	uc010wzk.1	+	1	170	c.170C>T	c.(169-171)ACG>ATG	p.T57M		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	57										ovary(1)|liver(1)	2						AGCCTGGTCACGAGAGGAATG	0.602			NA											4	81					0	0	0.009096	0	0
RAB31	11031	broad.mit.edu	37	18	9775294	9775294	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:9775294C>T	uc002kog.2	+	2	234	c.59C>T	c.(58-60)TCA>TTA	p.S20L		NM_006868	NP_006859	Q13636	RAB31_HUMAN	RAB31, member RAS oncogene family	19	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						GTTGGGAAATCAAGCATCGTG	0.473			NA											4	75					0	0	0.009096	0	0
FAM38B	63895	broad.mit.edu	37	18	10671680	10671680	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:10671680A>G	uc002kor.3	-	14	2114	c.1974T>C	c.(1972-1974)CTT>CTC	p.L658L	FAM38B_uc002koq.2_Silent_p.L493L	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2701						integral to membrane	ion channel activity			ovary(1)	1						CCACATTTGGAAGCTCTTCAA	0.373			NA											11	74					0	0	0.010729	0	0
LAMA3	3909	broad.mit.edu	37	18	21441740	21441740	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:21441740G>T	uc002kuq.2	+	35	4639	c.4553G>T	c.(4552-4554)TGG>TTG	p.W1518L	LAMA3_uc002kur.2_Missense_Mutation_p.W1518L	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	1518	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCGCGTCCTGGGTCGCACCC	0.582			NA											5	17					0.000602214	0.000659027	0.000602	1	0
IMPACT	55364	broad.mit.edu	37	18	22020507	22020507	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:22020507G>A	uc002kvh.3	+	6	527	c.415G>A	c.(415-417)GAT>AAT	p.D139N	IMPACT_uc002kvg.3_Missense_Mutation_p.D121N	NM_018439	NP_060909	Q9P2X3	IMPCT_HUMAN	Impact homolog	139											0	all_cancers(21;0.00018)|all_epithelial(16;1.5e-06)|Lung NSC(20;0.0027)|all_lung(20;0.0085)|Colorectal(14;0.0361)|Ovarian(20;0.0991)					TGAATGTGAAGATGATCTCAT	0.363			NA											25	88					0	0	0.005443	0	0
ZNF521	25925	broad.mit.edu	37	18	22806338	22806338	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:22806338C>A	uc002kvk.2	-	4	1791	c.1544G>T	c.(1543-1545)TGT>TTT	p.C515F	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Missense_Mutation_p.C515F|ZNF521_uc002kvl.2_Missense_Mutation_p.C295F	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	515	C2H2-type 12.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					GCAATGGGGACAAAAGAATGC	0.463			NA	T	PAX5	ALL								36	76					6.90743e-12	1.04664e-11	0.003755	1	0
TAF4B	6875	broad.mit.edu	37	18	23845200	23845200	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:23845200G>T	uc002kvu.3	+	2	899	c.410G>T	c.(409-411)AGA>ATA	p.R137I	TAF4B_uc002kvs.3_RNA|TAF4B_uc002kvt.3_Missense_Mutation_p.R137I	NM_005640	NP_005631	Q92750	TAF4B_HUMAN	TAF4b RNA polymerase II, TATA box binding	137					transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleolus|transcription factor TFIID complex	DNA binding|NF-kappaB binding|sequence-specific DNA binding transcription factor activity			lung(1)|central_nervous_system(1)|skin(1)	3	all_cancers(21;0.00151)|Lung NSC(5;0.000401)|all_lung(6;0.00115)|Ovarian(20;0.124)		Epithelial(2;9.57e-07)|all cancers(3;5.15e-06)|OV - Ovarian serous cystadenocarcinoma(3;1.96e-05)|LUSC - Lung squamous cell carcinoma(2;0.00594)|Lung(2;0.0267)			ACTGTAACAAGAGCCGAGACC	0.383			NA											28	84					1.04121e-07	1.38651e-07	0.005443	1	0
DSC1	1823	broad.mit.edu	37	18	28737517	28737517	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:28737517G>C	uc002kwn.2	-	3	430	c.168C>G	c.(166-168)CTC>CTG	p.L56L	DSC1_uc002kwm.2_Silent_p.L56L	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	56					homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TGGCCGACTTGAGACACTCCT	0.453			NA											7	78					0	0	0.00308	0	0
MRO	83876	broad.mit.edu	37	18	48331607	48331607	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:48331607C>T	uc002lew.3	-	5	640	c.346G>A	c.(346-348)GTC>ATC	p.V116I	MRO_uc010xdn.1_Missense_Mutation_p.V116I|MRO_uc010dpa.2_Missense_Mutation_p.V130I|MRO_uc010dpb.2_Missense_Mutation_p.V130I|MRO_uc010dpc.2_Missense_Mutation_p.V116I|MRO_uc002lex.3_Missense_Mutation_p.V116I	NM_031939	NP_114145	Q9BYG7	MSTRO_HUMAN	maestro isoform a	116						nucleolus	binding				0		Colorectal(6;0.0596)		Colorectal(21;0.082)		CCCAGAACGACGGTCAGAGTC	0.433			NA											7	55					0	0	0.001984	0	0
CDH20	28316	broad.mit.edu	37	18	59195204	59195204	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:59195204T>C	uc010dps.1	+	6	1034	c.1022T>C	c.(1021-1023)CTG>CCG	p.L341P	CDH20_uc002lif.2_Missense_Mutation_p.L335P	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	341	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TTTCAGCCCCTGAGTTTTGAA	0.443			NA											17	29					0	0	0.006122	0	0
PHLPP1	23239	broad.mit.edu	37	18	60506065	60506065	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:60506065G>T	uc002lis.2	+	4	464	c.286G>T	c.(286-288)GGA>TGA	p.G96*		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	608	PH.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						TAGCTCCTCTGGACCCCAAAG	0.428			NA											34	60					2.08457e-15	3.38459e-15	0.010818	1	0
SERPINB4	6318	broad.mit.edu	37	18	61326698	61326698	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:61326698T>C	uc002ljg.2	-	3	312	c.286A>G	c.(286-288)ACT>GCT	p.T96A	SERPINB3_uc002lji.2_Missense_Mutation_p.T96A|SERPINB3_uc010dqa.2_Missense_Mutation_p.T96A|SERPINB3_uc010dqb.2_Missense_Mutation_p.T96A			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	96					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TATGCATCAGTGGATTTGTTG	0.383			NA											31	62					0	0	0.002836	0	0
SERPINB2	5055	broad.mit.edu	37	18	61562575	61562575	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:61562575G>T	uc010xeu.1	+	4	579	c.246G>T	c.(244-246)ATG>ATT	p.M82I	SERPINB2_uc002ljo.2_Missense_Mutation_p.M82I|SERPINB2_uc010dqh.2_Missense_Mutation_p.M12I|SERPINB2_uc002ljp.1_5'Flank|SERPINB2_uc002ljq.1_5'Flank	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	82					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	GTGGGTTCATGCAGCAGATCC	0.423			NA											37	99					6.29468e-14	9.92696e-14	0.004878	1	0
SALL3	27164	broad.mit.edu	37	18	76754668	76754668	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr18:76754668A>T	uc002lmt.2	+	2	2677	c.2677A>T	c.(2677-2679)AGC>TGC	p.S893C	SALL3_uc010dra.2_Missense_Mutation_p.S500C	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	893					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		CAGCGCGGGCAGCCCCGCCCT	0.731			NA											4	19					0	0	0.000602	0	0
UQCR11	10975	broad.mit.edu	37	19	1599507	1599507	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:1599507C>T	uc002ltm.2	-	2	126	c.103G>A	c.(103-105)GCC>ACC	p.A35T		NM_006830	NP_006821	O14957	QCR10_HUMAN	ubiquinol-cytochrome c reductase, 6.4kDa	35	Helical; (Potential).				respiratory electron transport chain	integral to membrane|mitochondrial inner membrane|respiratory chain	electron carrier activity			ovary(1)|breast(1)	2						CAATCGGTGGCCCACACCAGC	0.572			NA											7	86					0	0	0.008291	0	0
ZNF556	80032	broad.mit.edu	37	19	2873608	2873608	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:2873608C>A	uc002lwp.1	+	2	205	c.118C>A	c.(118-120)CTG>ATG	p.L40M	ZNF556_uc002lwq.2_Missense_Mutation_p.L40M	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTCAAGCACCTGGCCTCAGT	0.378			NA											16	64					1.67942e-08	2.29792e-08	0.006122	1	0
PTPRS	5802	broad.mit.edu	37	19	5206810	5206810	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:5206810C>T	uc002mbv.2	-	38	6056	c.5822G>A	c.(5821-5823)GGA>GAA	p.G1941E	PTPRS_uc002mbu.1_Intron|PTPRS_uc010xin.1_Missense_Mutation_p.G1483E|PTPRS_uc002mbw.2_Missense_Mutation_p.G1903E|PTPRS_uc002mbx.2_Missense_Mutation_p.G1498E|PTPRS_uc002mby.2_Missense_Mutation_p.G1494E	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1941	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GTCAAAGCTTCCGAGGTACTC	0.632			NA											8	60					0	0	0.00308	0	0
PTPRS	5802	broad.mit.edu	37	19	5244311	5244311	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:5244311C>A	uc002mbv.2	-	11	1405	c.1171G>T	c.(1171-1173)GGC>TGC	p.G391C	PTPRS_uc002mbu.1_Missense_Mutation_p.G378C|PTPRS_uc010xin.1_Missense_Mutation_p.G378C|PTPRS_uc002mbw.2_Missense_Mutation_p.G378C|PTPRS_uc002mbx.2_Missense_Mutation_p.G382C|PTPRS_uc002mby.2_Missense_Mutation_p.G378C	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	391	Fibronectin type-III 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		GGGCTCAGGCCGCCGATGCTG	0.582			NA											3	43					0.00024832	0.000277565	0.009096	1	0
EMR1	2015	broad.mit.edu	37	19	6921873	6921873	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:6921873C>T	uc002mfw.2	+	14	1808	c.1770C>T	c.(1768-1770)ATC>ATT	p.I590I	EMR1_uc010dvc.2_Silent_p.I590I|EMR1_uc010dvb.2_Silent_p.I538I|EMR1_uc010xji.1_Silent_p.I449I|EMR1_uc010xjj.1_Silent_p.I413I	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	590	GPS.|Extracellular (Potential).|Ser/Thr-rich.				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					TTGCCGTTATCATGGCGTCTG	0.438			NA											6	78					0	0	0.001984	0	0
MYO1F	4542	broad.mit.edu	37	19	8601438	8601438	+	Silent	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:8601438T>G	uc002mkg.2	-	18	1957	c.1843A>C	c.(1843-1845)AGG>CGG	p.R615R		NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	615	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CTGCGCACCCTGATGTTCTCC	0.647			NA											8	36					0	0	0.00308	0	0
MUC16	94025	broad.mit.edu	37	19	9028316	9028316	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:9028316C>G	uc002mkp.2	-	11	36680	c.36476G>C	c.(36475-36477)AGA>ACA	p.R12159T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12161	SEA 1.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGTCGCTCTCTGTCCAGTCC	0.562			NA											4	149					0	0	0.009096	0	0
MUC16	94025	broad.mit.edu	37	19	9049864	9049864	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:9049864A>G	uc002mkp.2	-	5	31971	c.31767T>C	c.(31765-31767)TCT>TCC	p.S10589S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10591	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCTCACTAGAAGAAACATCTA	0.458			NA											15	71					0	0	0.00245	0	0
MUC16	94025	broad.mit.edu	37	19	9059267	9059267	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:9059267T>A	uc002mkp.2	-	3	28383	c.28179A>T	c.(28177-28179)CCA>CCT	p.P9393P		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9395	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTGAGTTCCTGGCCAGGAGG	0.537			NA											30	111					0	0	0.007291	0	0
ZNF136	7695	broad.mit.edu	37	19	12298356	12298356	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:12298356G>T	uc002mti.2	+	4	1263	c.1163G>T	c.(1162-1164)GGA>GTA	p.G388V	ZNF136_uc010xmh.1_Missense_Mutation_p.G322V	NM_003437	NP_003428	P52737	ZN136_HUMAN	zinc finger protein 136	388					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|transcription corepressor activity|zinc ion binding			ovary(1)|pancreas(1)	2						AAACATACTGGAGAAGGACCT	0.393			NA											4	35					0.00024832	0.000277565	0.009096	1	0
CC2D1A	54862	broad.mit.edu	37	19	14034556	14034556	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:14034556G>T	uc002mxo.2	+	17	2171	c.1872G>T	c.(1870-1872)AAG>AAT	p.K624N	CC2D1A_uc002mxp.2_Missense_Mutation_p.K624N|CC2D1A_uc010dzh.2_Missense_Mutation_p.K193N|CC2D1A_uc002mxq.1_Missense_Mutation_p.K269N	NM_017721	NP_060191	Q6P1N0	C2D1A_HUMAN	coiled-coil and C2 domain containing 1A	624					positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus|plasma membrane	DNA binding|signal transducer activity				0			OV - Ovarian serous cystadenocarcinoma(19;3.49e-23)			ACATTCTGAAGCAAGCCTTCG	0.622			NA											11	45					0.000673444	0.000734666	0.008291	1	0
CD97	976	broad.mit.edu	37	19	14513455	14513455	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:14513455G>T	uc002myl.2	+	12	1353	c.1230G>T	c.(1228-1230)TTG>TTT	p.L410F	CD97_uc002mym.2_Missense_Mutation_p.L361F|CD97_uc002myn.2_Missense_Mutation_p.L317F	NM_078481	NP_510966	P48960	CD97_HUMAN	CD97 antigen isoform 1 precursor	410	Extracellular (Potential).				cell adhesion|cell-cell signaling|cellular component movement|immune response|inflammatory response|neuropeptide signaling pathway	extracellular space|integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(3)|breast(1)	4						TGACGACATTGCTGGCCAATG	0.572			NA											42	66					3.76604e-16	6.19172e-16	0.010771	1	0
OR7A10	390892	broad.mit.edu	37	19	14952214	14952214	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:14952214T>A	uc002mzx.1	-	1	476	c.476A>T	c.(475-477)CAA>CTA	p.Q159L		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	159	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					CATTAAGCTTTGTAACATGGA	0.453			NA											29	69					0	0	0.009535	0	0
CYP4F8	11283	broad.mit.edu	37	19	15734867	15734867	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:15734867G>T	uc002nbi.2	+	11	1142	c.1078G>T	c.(1078-1080)GAG>TAG	p.E360*	CYP4F8_uc010xoj.1_Nonsense_Mutation_p.E172*	NM_007253	NP_009184	P98187	CP4F8_HUMAN	cytochrome P450, family 4, subfamily F,	360					prostaglandin metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	alkane 1-monooxygenase activity|aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			large_intestine(1)	1						GGAGGTGCAAGAGCTTCTGAA	0.567			NA											19	70					1.56452e-12	2.39145e-12	0.007413	1	0
CYP4F12	66002	broad.mit.edu	37	19	15784533	15784533	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:15784533G>T	uc002nbl.2	+	2	255	c.194G>T	c.(193-195)GGC>GTC	p.G65V	CYP4F12_uc010xoo.1_Missense_Mutation_p.G65V|CYP4F12_uc010xop.1_Missense_Mutation_p.G65V	NM_023944	NP_076433			cytochrome P450, family 4, subfamily F,											skin(3)|ovary(2)|central_nervous_system(2)	7	Acute lymphoblastic leukemia(2;0.0367)					GGTCACCTGGGCCTGGTGAGT	0.572			NA											7	90					8.12818e-05	9.32508e-05	0.001984	1	0
OR10H4	126541	broad.mit.edu	37	19	16060501	16060501	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:16060501G>C	uc010xov.1	+	1	684	c.684G>C	c.(682-684)TTG>TTC	p.L228F		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CTGCCATCTTGAGGATTCCCT	0.498			NA											8	248					0	0	0.010729	0	0
TMEM38A	79041	broad.mit.edu	37	19	16799110	16799110	+	Silent	SNP	G	G	A	rs142098397		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:16799110G>A	uc002nes.2	+	6	919	c.828G>A	c.(826-828)TCG>TCA	p.S276S		NM_024074	NP_076979	Q9H6F2	TM38A_HUMAN	transmembrane protein 38A	276	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			central_nervous_system(2)|ovary(1)	3						CTCAGCATTCGGCCATGCCCG	0.647			NA											9	77					0	0	0.006214	0	0
NWD1	284434	broad.mit.edu	37	19	16910855	16910855	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:16910855G>A	uc002neu.3	+	17	4040	c.3618G>A	c.(3616-3618)CGG>CGA	p.R1206R	NWD1_uc002net.3_Silent_p.R1071R|NWD1_uc002nev.3_Silent_p.R1000R			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1206	WD 9.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ATAGGTCCCGGGTGCCTGCAC	0.582			NA											4	41					0	0	0.009096	0	0
ABHD8	79575	broad.mit.edu	37	19	17411939	17411939	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:17411939C>G	uc002ngb.3	-	2	727	c.487G>C	c.(487-489)GAG>CAG	p.E163Q		NM_024527	NP_078803	Q96I13	ABHD8_HUMAN	abhydrolase domain containing 8	163							hydrolase activity				0						ATGCGCTTCTCACAGTCAATA	0.458	Ovarian(156;1368 2543 15275 41187)		NA											4	101					0	0	0.000602	0	0
NDUFA13	51079	broad.mit.edu	37	19	19645921	19645921	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:19645921G>T	uc010xqy.1	+	5	902	c.643G>T	c.(643-645)GGG>TGG	p.G215W	NDUFA13_uc010xqx.1_3'UTR|YJEFN3_uc002nmt.1_Missense_Mutation_p.G133W|YJEFN3_uc010ecf.1_Missense_Mutation_p.G83W|YJEFN3_uc002nmu.1_RNA	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	CGGGGCAGTGGGGCTGGTCTG	0.627			NA											19	134					5.03518e-11	7.4458e-11	0.007413	1	0
ZNF676	163223	broad.mit.edu	37	19	22364202	22364202	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:22364202G>A	uc002nqs.1	-	3	635	c.317C>T	c.(316-318)ACA>ATA	p.T106I		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	106					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				CTGTGTAGTTGTTAAACTCTG	0.323			NA											60	78					0	0	0.00361	0	0
ZNF536	9745	broad.mit.edu	37	19	30934628	30934628	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:30934628G>T	uc002nsu.1	+	2	297	c.159G>T	c.(157-159)CGG>CGT	p.R53R	ZNF536_uc010edd.1_Silent_p.R53R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	53					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					TCCATCCCCGGCCCAACCCCG	0.667			NA											13	75					1.5842e-08	2.17619e-08	0.001855	1	0
ZNF536	9745	broad.mit.edu	37	19	30936268	30936268	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:30936268C>A	uc002nsu.1	+	2	1937	c.1799C>A	c.(1798-1800)CCT>CAT	p.P600H	ZNF536_uc010edd.1_Missense_Mutation_p.P600H	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	600					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AAGCTCGACCCTTTAGAAAGC	0.527			NA											62	94					6.25564e-26	1.09763e-25	0.00361	1	0
ZNF536	9745	broad.mit.edu	37	19	31040277	31040277	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:31040277C>A	uc002nsu.1	+	4	3889	c.3751C>A	c.(3751-3753)CCG>ACG	p.P1251T	ZNF536_uc010edd.1_Missense_Mutation_p.P1251T	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1251					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCTGCCAAAGCCGGAGCGGGG	0.617			NA											7	37					0.00307968	0.00330101	0.00308	1	0
WDR62	284403	broad.mit.edu	37	19	36562587	36562587	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:36562587G>T	uc002odc.2	+	8	1103	c.1012G>T	c.(1012-1014)GGG>TGG	p.G338W	WDR62_uc002odd.2_Missense_Mutation_p.G338W|WDR62_uc002odb.2_Missense_Mutation_p.G338W	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	338					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ACACTACCTTGGGGTAGACGT	0.617			NA											6	58					8.12818e-05	9.32508e-05	0.001984	1	0
ZNF260	339324	broad.mit.edu	37	19	37006026	37006026	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:37006026T>A	uc002oee.1	-	4	959	c.115A>T	c.(115-117)AAG>TAG	p.K39*	ZNF260_uc002oed.1_Nonsense_Mutation_p.K36*|ZNF260_uc010eey.1_Nonsense_Mutation_p.K36*|ZNF260_uc002oef.1_Nonsense_Mutation_p.K36*	NM_001012756	NP_001012774	Q3ZCT1	ZN260_HUMAN	zinc finger protein 260	39	C2H2-type 1.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.162)					AGGTTTTGCTTCAGGCTAAAA	0.378			NA											13	118					0	0	0.001855	0	0
ZNF829	374899	broad.mit.edu	37	19	37399297	37399297	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:37399297G>T	uc002ofa.1	-	4	523	c.161C>A	c.(160-162)GCT>GAT	p.A54D	ZNF345_uc002oez.2_Intron|ZNF829_uc002ofb.2_Missense_Mutation_p.A54D	NM_001037232	NP_001032309	Q3KNS6	ZN829_HUMAN	zinc finger protein 829	54	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CATCTGATCAGCGTCCAGGCA	0.433			NA											21	94					2.37509e-13	3.67893e-13	0.010504	1	0
ZNF571	51276	broad.mit.edu	37	19	38056663	38056663	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:38056663A>G	uc002ogt.2	-	4	768	c.667T>C	c.(667-669)TAT>CAT	p.Y223H	uc002ogm.2_Intron|uc002ogn.2_Intron|ZNF540_uc002ogo.2_Intron|ZNF540_uc002ogp.2_Intron|ZNF540_uc002ogq.2_Intron|ZNF571_uc002ogr.1_Intron|uc002ogs.1_5'Flank|ZNF571_uc010efp.2_Missense_Mutation_p.Y223H	NM_016536	NP_057620	Q7Z3V5	ZN571_HUMAN	zinc finger protein 571	223	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTACACTGATAAGGTTTTTCA	0.388			NA											4	45					0	0	0.009096	0	0
ZNF607	84775	broad.mit.edu	37	19	38190116	38190116	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:38190116C>A	uc002ohc.1	-	5	1512	c.916G>T	c.(916-918)GAA>TAA	p.E306*	ZNF607_uc002ohb.1_Nonsense_Mutation_p.E305*	NM_032689	NP_116078	Q96SK3	ZN607_HUMAN	zinc finger protein 607	306					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)			TAGGGTTTTTCTCCAGTATGA	0.413			NA											23	118					3.62473e-10	5.21961e-10	0.012319	1	0
CYP2F1	1572	broad.mit.edu	37	19	41622361	41622361	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:41622361T>A	uc002opu.1	+	3	229	c.173T>A	c.(172-174)CTG>CAG	p.L58Q	CYP2F1_uc010xvw.1_5'UTR|CYP2F1_uc010xvv.1_Missense_Mutation_p.L58Q|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	58					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						TACCCTCAGCTGAGCAAGGAG	0.602			NA											18	141					0	0	0.006122	0	0
ATP1A3	478	broad.mit.edu	37	19	42489545	42489545	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:42489545C>A	uc002osg.2	-	7	791	c.637G>T	c.(637-639)GAG>TAG	p.E213*	ATP1A3_uc010xwf.1_Nonsense_Mutation_p.E224*|ATP1A3_uc010xwg.1_Nonsense_Mutation_p.E183*|ATP1A3_uc010xwh.1_Nonsense_Mutation_p.E226*|ATP1A3_uc002osh.2_Nonsense_Mutation_p.E213*	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	213	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GTCTGGGGCTCGGATTCGCCA	0.602			NA											26	68					1.75199e-13	2.72183e-13	0.007291	1	0
GRIK5	2901	broad.mit.edu	37	19	42510926	42510926	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:42510926C>T	uc002osj.1	-	15	1943	c.1908G>A	c.(1906-1908)ACG>ACA	p.T636T	GRIK5_uc002osi.1_Silent_p.T208T	NM_002088	NP_002079	Q16478	GRIK5_HUMAN	glutamate receptor KA2 precursor	636	Helical; (Potential).					cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity				0		Prostate(69;0.059)			L-Glutamic Acid(DB00142)	CCAGGTTGGCCGTGTAGGAGG	0.632			NA											6	25					0	0	0.001984	0	0
PSG6	5675	broad.mit.edu	37	19	43414865	43414865	+	Missense_Mutation	SNP	C	C	G	rs1058688		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:43414865C>G	uc002ovj.1	-	3	625	c.573G>C	c.(571-573)AGG>AGC	p.R191S	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.R198S|PSG6_uc002ovi.2_Missense_Mutation_p.R192S|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG6_uc002ove.1_5'UTR|PSG6_uc002ovf.1_Missense_Mutation_p.R191S|PSG6_uc002ovg.1_Missense_Mutation_p.R191S	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	191	Ig-like C2-type 1.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				ACAGCTGCAACCTGTGAGTCA	0.498			NA											27	334					0	0	0.012213	0	0
PSG2	5670	broad.mit.edu	37	19	43576039	43576039	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:43576039C>A	uc002ovr.2	-	4	870	c.777G>T	c.(775-777)TTG>TTT	p.L259F	PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG2_uc002ovq.3_Missense_Mutation_p.L259F|PSG2_uc010eiq.1_Missense_Mutation_p.L259F|PSG2_uc002ovs.3_Missense_Mutation_p.L259F|PSG2_uc002ovt.3_Missense_Mutation_p.L259F	NM_031246	NP_112536	P11465	PSG2_HUMAN	pregnancy specific beta-1-glycoprotein 2	259	Ig-like C2-type 2.				cell migration|female pregnancy	extracellular region					0		Prostate(69;0.00682)				CGAAGCAAGACAAGTAGAGGT	0.448			NA											60	220					4.88506e-25	8.54271e-25	0.00361	1	0
PSG9	5678	broad.mit.edu	37	19	43763273	43763273	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:43763273G>T	uc002owd.3	-	4	823	c.724C>A	c.(724-726)CCC>ACC	p.P242T	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Missense_Mutation_p.P149T|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	242	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GTGATGTAGGGGATGGGCAGC	0.478			NA											39	306					2.45108e-15	3.96733e-15	0.00874	1	0
KCNN4	3783	broad.mit.edu	37	19	44273909	44273909	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:44273909C>A	uc002oxl.2	-	5	1288	c.892G>T	c.(892-894)GTG>TTG	p.V298L	KCNN4_uc010eiz.2_Missense_Mutation_p.V211L	NM_002250	NP_002241	O15554	KCNN4_HUMAN	intermediate conductance calcium-activated	298	Calmodulin-binding.				defense response	voltage-gated potassium channel complex	calcium-activated potassium channel activity|calmodulin binding			ovary(2)	2		Prostate(69;0.0352)			Clotrimazole(DB00257)|Halothane(DB01159)|Quinine(DB00468)	AAGTTGTGCACGTGCTTCTCT	0.493			NA											19	94					6.94344e-10	9.93007e-10	0.006122	1	0
ZNF284	342909	broad.mit.edu	37	19	44585189	44585189	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:44585189G>A	uc002oyg.1	+	3	253	c.37G>A	c.(37-39)GTG>ATG	p.V13M	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	13	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				CTTCAAGGATGTGGCTGTGGT	0.522			NA											22	158					0	0	0.010504	0	0
ZNF284	342909	broad.mit.edu	37	19	44590804	44590804	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:44590804G>T	uc002oyg.1	+	5	1389	c.1173G>T	c.(1171-1173)CGG>CGT	p.R391R	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	391	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				GACATCAGCGGGTCCACAATG	0.433			NA											40	121					1.57019e-19	2.67857e-19	0.007835	1	0
ZNF235	9310	broad.mit.edu	37	19	44791690	44791690	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:44791690C>G	uc002oza.3	-	5	2001	c.1898G>C	c.(1897-1899)GGT>GCT	p.G633A	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.G629A|ZNF235_uc010xwx.1_Missense_Mutation_p.G547A	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	633	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				GAAGGCCTTACCACAAGTGTC	0.448			NA											7	153					0	0	0.001984	0	0
CKM	1158	broad.mit.edu	37	19	45818777	45818777	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:45818777G>T	uc002pbd.2	-	4	501	c.427C>A	c.(427-429)CCC>ACC	p.P143T		NM_001824	NP_001815	P06732	KCRM_HUMAN	muscle creatine kinase	143	Phosphagen kinase C-terminal.				creatine metabolic process	cytosol	ATP binding|creatine kinase activity			skin(1)	1		Ovarian(192;0.0336)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;2.29e-44)|Epithelial(262;1.05e-38)|GBM - Glioblastoma multiforme(486;3.56e-07)	Creatine(DB00148)	CAGTGTGGGGGCAACGTGTAG	0.682			NA											4	32					0.00909568	0.00961122	0.009096	1	0
PPP1R15A	23645	broad.mit.edu	37	19	49378083	49378083	+	Silent	SNP	G	G	T	rs138580661		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:49378083G>T	uc002pky.3	+	2	1862	c.1593G>T	c.(1591-1593)CTG>CTT	p.L531L		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	531	Interaction with MLL.				apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		CCCTCCGACTGCAAAGGCGGC	0.597			NA											10	47					1.58986e-06	2.00704e-06	0.008291	1	0
CGB1	114335	broad.mit.edu	37	19	49539443	49539443	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:49539443C>A	uc002plx.2	-	2	350	c.127G>T	c.(127-129)GTG>TTG	p.V43L	CGB_uc010yad.1_Intron|SNAR-G1_uc010emp.1_5'Flank	NM_033377	NP_203695	A6NKQ9	CGB1_HUMAN	chorionic gonadotropin, beta polypeptide 1	75						extracellular region	hormone activity				0		all_epithelial(76;9.62e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)		GTGATGCACACGGGGCAGCCC	0.682			NA											8	95					1.12685e-05	1.36319e-05	0.004482	1	0
GPR32	2854	broad.mit.edu	37	19	51274412	51274412	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:51274412G>T	uc010ycf.1	+	1	555	c.555G>T	c.(553-555)TGG>TGT	p.W185C		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	185	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CCAGAAAATGGAATGGCTGTA	0.572	Esophageal Squamous(113;152 1581 5732 15840 44398)		NA											9	50					1.12685e-05	1.36319e-05	0.004482	1	0
SIGLEC8	27181	broad.mit.edu	37	19	51960729	51960729	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:51960729C>A	uc002pwt.2	-	2	786	c.719G>T	c.(718-720)CGC>CTC	p.R240L	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Intron	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	240	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CACATCGAGGCGGACGGTACT	0.622			NA											12	25					1.5842e-08	2.17619e-08	0.001855	1	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147104	52147104	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:52147104C>A	uc002pxf.3	-	5	1060	c.940G>T	c.(940-942)GGA>TGA	p.G314*		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	314	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		AATTCCCCTCCCTCTCTAGCT	0.587			NA											7	57					0.000157383	0.000178208	0.00308	1	0
FPR3	2359	broad.mit.edu	37	19	52327484	52327484	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:52327484C>T	uc002pxt.1	+	2	667	c.483C>T	c.(481-483)TTC>TTT	p.F161F		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	161	Helical; Name=4; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						TACCAAATTTCATCTTCTGGA	0.473			NA											5	120					0	0	0.000602	0	0
ZNF28	7576	broad.mit.edu	37	19	53303365	53303365	+	Missense_Mutation	SNP	G	G	A	rs139244544		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53303365G>A	uc002qad.2	-	4	1853	c.1733C>T	c.(1732-1734)CCG>CTG	p.P578L	ZNF28_uc002qac.2_Missense_Mutation_p.P525L|ZNF28_uc010eqe.2_Missense_Mutation_p.P524L	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	578					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		ACATTTGTACGGTTTCTCTCC	0.423			NA											46	158					0	0	0.011902	0	0
ZNF28	7576	broad.mit.edu	37	19	53311326	53311326	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53311326C>T	uc002qad.2	-	3	196	c.76G>A	c.(76-78)GAC>AAC	p.D26N	ZNF28_uc002qac.2_5'UTR|ZNF28_uc010eqe.2_Intron	NM_006969	NP_008900	P17035	ZNF28_HUMAN	zinc finger protein 28	26	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(134;0.0386)|Lung(386;0.145)		TGAGCAGGGTCCAGGCATTTC	0.488			NA											26	204					0	0	0.004656	0	0
ZNF160	90338	broad.mit.edu	37	19	53572675	53572675	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53572675C>A	uc010eqk.2	-	7	1528	c.1112G>T	c.(1111-1113)TGT>TTT	p.C371F	ZNF160_uc002qaq.3_Missense_Mutation_p.C371F|ZNF160_uc002qar.3_Missense_Mutation_p.C371F	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	371	C2H2-type 5.				hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		ACATTCATTACATTTGAACGG	0.388			NA											28	104					2.12542e-12	3.24406e-12	0.00632	1	0
ZNF415	55786	broad.mit.edu	37	19	53611692	53611692	+	Missense_Mutation	SNP	G	G	A	rs138184993	by1000genomes	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53611692G>A	uc002qax.2	-	7	2099	c.1750C>T	c.(1750-1752)CGC>TGC	p.R584C	ZNF415_uc002qat.2_Missense_Mutation_p.R548C|ZNF415_uc002qaw.2_Missense_Mutation_p.R536C|ZNF415_uc010yds.1_Missense_Mutation_p.R536C|ZNF415_uc010ydt.1_Missense_Mutation_p.R536C|ZNF415_uc002qau.2_Missense_Mutation_p.R523C|ZNF415_uc002qav.2_Missense_Mutation_p.R548C|ZNF415_uc002qba.2_Missense_Mutation_p.R306C|ZNF415_uc002qay.2_Missense_Mutation_p.R523C|ZNF415_uc002qaz.2_Missense_Mutation_p.R584C	NR_028343		Q09FC8	ZN415_HUMAN	RecName: Full=Zinc finger protein 415;	584	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton|nucleolus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.0191)		AGGTTTGGGCGCACACTAAAG	0.383			NA											27	127					0	0	0.00632	0	0
ZNF665	79788	broad.mit.edu	37	19	53668214	53668214	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53668214C>G	uc010eqm.1	-	4	1629	c.1529G>C	c.(1528-1530)GGA>GCA	p.G510A		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	445					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		AGGTTTTTCTCCAGTATGAAC	0.393			NA											9	183					0	0	0.004482	0	0
VN1R2	317701	broad.mit.edu	37	19	53762734	53762734	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53762734G>T	uc002qbi.2	+	1	1190	c.1106G>T	c.(1105-1107)TGC>TTC	p.C369F		NM_173856	NP_776255	Q8NFZ6	VN1R2_HUMAN	vomeronasal 1 receptor 2	369	Cytoplasmic (Potential).				response to pheromone	integral to membrane|plasma membrane	pheromone receptor activity				0				GBM - Glioblastoma multiforme(134;0.00301)		GTTCTCATGTGCCGTGACCCC	0.428			NA											31	147					7.26314e-15	1.16121e-14	0.007291	1	0
ZNF765	91661	broad.mit.edu	37	19	53911608	53911608	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:53911608G>T	uc010ydx.1	+	6	1127	c.800G>T	c.(799-801)GGT>GTT	p.G267V	ZNF765_uc002qbm.2_Missense_Mutation_p.G267V|ZNF765_uc002qbn.2_Intron	NM_001040185	NP_001035275	Q7L2R6	ZN765_HUMAN	zinc finger protein 765	267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00379)		TGTCACACTGGTGAGAAACCT	0.403			NA											36	100					1.03484e-13	1.61009e-13	0.005524	1	0
LILRA3	11026	broad.mit.edu	37	19	54803140	54803140	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:54803140C>A	uc002qfd.2	-	4	602	c.537G>T	c.(535-537)CGG>CGT	p.R179R	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	179	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		AGAAGATGGCCCGGGATGACC	0.567			NA											23	126					2.21704e-12	3.37896e-12	0.00278	1	0
LILRA2	11027	broad.mit.edu	37	19	55087569	55087569	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:55087569G>T	uc002qgg.3	+	6	1337	c.1248G>T	c.(1246-1248)GTG>GTT	p.V416V	LILRA2_uc010ern.2_Silent_p.V416V|LILRA2_uc002qgf.2_Silent_p.V416V|LILRA2_uc010yfe.1_Silent_p.V416V|LILRA2_uc010yff.1_Silent_p.V404V|LILRA2_uc010ero.2_Silent_p.V404V|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	416	Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TGGAGCTCGTGGTCTCAGGTG	0.607			NA											13	86					1.3612e-06	1.72463e-06	0.003163	1	0
PTPRH	5794	broad.mit.edu	37	19	55715354	55715354	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:55715354A>T	uc002qjq.2	-	5	755	c.682T>A	c.(682-684)TGG>AGG	p.W228R	PTPRH_uc010esv.2_Intron|PTPRH_uc002qjs.2_Missense_Mutation_p.W235R	NM_002842	NP_002833	Q9HD43	PTPRH_HUMAN	protein tyrosine phosphatase, receptor type, H	228	Extracellular (Potential).|Fibronectin type-III 3.				apoptosis	cytoplasm|integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0479)		GGGACCTCCCAGCTCAGGGAG	0.537			NA											16	97					0	0	0.003163	0	0
NLRP11	204801	broad.mit.edu	37	19	56320398	56320398	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:56320398C>T	uc010ygf.1	-	5	2289	c.1578G>A	c.(1576-1578)GTG>GTA	p.V526V	NLRP11_uc002qlz.2_Silent_p.V427V|NLRP11_uc002qmb.2_Silent_p.V427V|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	526							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TCATGTATCCCACCGAGTACC	0.423			NA											39	178					0	0	0.007835	0	0
NLRP4	147945	broad.mit.edu	37	19	56382348	56382348	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:56382348G>T	uc002qmd.3	+	7	2932	c.2510G>T	c.(2509-2511)TGC>TTC	p.C837F	NLRP4_uc002qmf.2_Missense_Mutation_p.C762F|NLRP4_uc010etf.2_Missense_Mutation_p.C612F	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	837							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CCGGACTGCTGCCTGGATTCA	0.507			NA											13	62					2.23348e-06	2.80259e-06	0.004007	1	0
NLRP5	126206	broad.mit.edu	37	19	56539670	56539670	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:56539670C>G	uc002qmj.2	+	7	2071	c.2071C>G	c.(2071-2073)CTT>GTT	p.L691V	NLRP5_uc002qmi.2_Missense_Mutation_p.L672V	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	691						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		CTTCCACTGTCTTTTCGAGAC	0.522			NA											13	128					0	0	0.001855	0	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701607	56701607	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:56701607C>A	uc010ygh.1	-	4	1077	c.1077G>T	c.(1075-1077)GTG>GTT	p.V359V		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	359	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						ATTTATTGCACACGTCACATG	0.527			NA											19	80					6.49762e-13	9.99045e-13	0.006122	1	0
ZNF71	58491	broad.mit.edu	37	19	57132765	57132765	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:57132765G>C	uc002qnm.3	+	3	348	c.110G>C	c.(109-111)GGA>GCA	p.G37A		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	37						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		GGCTCAGAAGGAGTGTGGGAA	0.607			NA											7	35					0	0	0.001984	0	0
ZNF71	58491	broad.mit.edu	37	19	57133628	57133628	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:57133628C>T	uc002qnm.3	+	3	1211	c.973C>T	c.(973-975)CCC>TCC	p.P325S		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	325						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		CGGCGAGAAGCCCTACGTGTG	0.642			NA											15	62					0	0	0.00499	0	0
PEG3	5178	broad.mit.edu	37	19	57326145	57326145	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:57326145C>A	uc002qnu.2	-	7	4016	c.3665G>T	c.(3664-3666)GGG>GTG	p.G1222V	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.G1193V|PEG3_uc002qnv.2_Missense_Mutation_p.G1222V|PEG3_uc002qnw.2_Missense_Mutation_p.G1098V|PEG3_uc002qnx.2_Missense_Mutation_p.G1096V|PEG3_uc010etr.2_Missense_Mutation_p.G1222V	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1222					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AATGGCCGACCCAGCAAGAGC	0.488			NA											18	53					4.75885e-15	7.65522e-15	0.00499	1	0
PEG3	5178	broad.mit.edu	37	19	57327947	57327947	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:57327947A>G	uc002qnu.2	-	7	2214	c.1863T>C	c.(1861-1863)TAT>TAC	p.Y621Y	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.Y592Y|PEG3_uc002qnv.2_Silent_p.Y621Y|PEG3_uc002qnw.2_Silent_p.Y497Y|PEG3_uc002qnx.2_Silent_p.Y495Y|PEG3_uc010etr.2_Silent_p.Y621Y	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	621					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TCTCTTTACCATACATTTTCT	0.363			NA											12	46					0	0	0.010729	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58187554	58187554	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:58187554C>T	uc002qpu.2	+	3	738	c.41C>T	c.(40-42)TCC>TTC	p.S14F		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	14					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGTGAACCATCCGAGAATAAT	0.398			NA											8	42					0	0	0.004482	0	0
ZNF587	84914	broad.mit.edu	37	19	58367546	58367546	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:58367546G>C	uc002qql.2	+	2	246	c.108G>C	c.(106-108)CAG>CAC	p.Q36H	ZNF587_uc002qqb.2_5'UTR|ZNF587_uc010yhh.1_5'UTR|ZNF587_uc002qqi.1_5'UTR|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Missense_Mutation_p.Q35H	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	36	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		GTGAGGCTCAGAGGTGCTTGT	0.498	Pancreas(59;641 1233 1885 20055 50741)		NA											6	155					0	0	0.001984	0	0
ZNF587	84914	broad.mit.edu	37	19	58369964	58369964	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:58369964G>C	uc002qql.2	+	3	322	c.184G>C	c.(184-186)GAT>CAT	p.D62H	ZNF587_uc002qqb.2_Missense_Mutation_p.D19H|ZNF587_uc010yhh.1_Missense_Mutation_p.D19H|ZNF587_uc002qqi.1_Missense_Mutation_p.D19H|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Missense_Mutation_p.D61H	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	62	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		TGGATCAAAAGATGAGGAGGC	0.502	Pancreas(59;641 1233 1885 20055 50741)		NA											6	104					0	0	0.001984	0	0
A1BG	1	broad.mit.edu	37	19	58864328	58864328	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:58864328G>T	uc002qsd.3	-	3	368	c.306C>A	c.(304-306)ACC>ACA	p.T102T	NCRNA00181_uc002qse.2_Intron|A1BG_uc002qsf.1_RNA|NCRNA00181_uc002qsg.2_RNA	NM_130786	NP_570602	P04217	A1BG_HUMAN	alpha 1B-glycoprotein precursor	102	Ig-like V-type 1.					extracellular region					0		all_cancers(17;3.04e-16)|all_epithelial(17;7.77e-12)|Lung NSC(17;3.25e-05)|Colorectal(82;5.46e-05)|all_lung(17;0.000129)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(17;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0269)		TGCTCAGCTGGGTCCATCCTG	0.637			NA											14	89					3.27435e-08	4.42801e-08	0.00245	1	0
MYT1L	23040	broad.mit.edu	37	2	1926362	1926362	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:1926362C>T	uc002qxe.2	-	10	2006	c.1179G>A	c.(1177-1179)TCG>TCA	p.S393S	MYT1L_uc002qxd.2_Silent_p.S393S|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	393					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CAAACACTCTCGACCGGGGGC	0.587			NA											11	51					0	0	0.010729	0	0
MYT1L	23040	broad.mit.edu	37	2	1926736	1926736	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:1926736C>A	uc002qxe.2	-	10	1632	c.805G>T	c.(805-807)GCC>TCC	p.A269S	MYT1L_uc002qxd.2_Missense_Mutation_p.A269S|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	269					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGTCCTTGGGCTAATAGTTTA	0.408			NA											29	233					2.48779e-11	3.721e-11	0.005443	1	0
CMPK2	129607	broad.mit.edu	37	2	6990087	6990087	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:6990087T>A	uc002qyo.2	-	5	1353	c.1244A>T	c.(1243-1245)CAG>CTG	p.Q415L	CMPK2_uc002qyn.1_RNA|CMPK2_uc010yis.1_Intron	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	415					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CTCCATCCGCTGGTAGGACAT	0.443			NA											24	63					0	0	0.004656	0	0
RNF144A	9781	broad.mit.edu	37	2	7154848	7154848	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:7154848G>T	uc002qys.2	+	5	688	c.246G>T	c.(244-246)GAG>GAT	p.E82D	RNF144A_uc002qyt.2_Intron	NM_014746	NP_055561	P50876	R144A_HUMAN	ring finger protein 144	82						Golgi apparatus|integral to membrane	ligase activity|zinc ion binding			ovary(1)|kidney(1)	2	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)	all_cancers(51;0.226)		OV - Ovarian serous cystadenocarcinoma(76;0.195)		CTTAGATTGAGTGCATGGTTG	0.388			NA											17	55					8.34094e-07	1.06324e-06	0.008871	1	0
APOB	338	broad.mit.edu	37	2	21234901	21234901	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:21234901G>T	uc002red.2	-	26	4967	c.4839C>A	c.(4837-4839)AGC>AGA	p.S1613R		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1613					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGAAAGCAGGCTGAAGAACC	0.423			NA											19	74					5.3912e-06	6.62947e-06	0.006122	1	0
CAD	790	broad.mit.edu	37	2	27446822	27446822	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:27446822G>T	uc002rji.2	+	8	1195	c.1033G>T	c.(1033-1035)GAT>TAT	p.D345Y	CAD_uc010eyw.2_Missense_Mutation_p.D345Y	NM_004341	NP_004332	P27708	PYR1_HUMAN	carbamoylphosphate synthetase 2/aspartate	345	Glutamine amidotransferase type-1.|GATase (Glutamine amidotransferase).				'de novo' pyrimidine base biosynthetic process|drug metabolic process|glutamine metabolic process|peptidyl-threonine phosphorylation|protein autophosphorylation|pyrimidine nucleoside biosynthetic process|pyrimidine nucleotide biosynthetic process	cytosol|neuronal cell body|nuclear matrix|terminal button	aspartate binding|aspartate carbamoyltransferase activity|ATP binding|carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity|dihydroorotase activity|enzyme binding|identical protein binding|metal ion binding|protein kinase activity			ovary(4)|large_intestine(2)|kidney(2)|lung(1)|pancreas(1)	10	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				L-Aspartic Acid(DB00128)|L-Glutamine(DB00130)	TGGCCCTTCAGATATGGAACT	0.507			NA											70	230					3.19358e-47	5.78836e-47	0.00361	1	0
C2orf16	84226	broad.mit.edu	37	2	27803250	27803250	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:27803250C>G	uc002rkz.3	+	1	3862	c.3811C>G	c.(3811-3813)CAG>GAG	p.Q1271E	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1271										large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					TGAAAGCACTCAGAATGAAAA	0.408			NA											15	127					0	0	0.003163	0	0
C2orf16	84226	broad.mit.edu	37	2	27805001	27805001	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:27805001C>G	uc002rkz.3	+	1	5613	c.5562C>G	c.(5560-5562)CTC>CTG	p.L1854L	ZNF512_uc010ylv.1_5'Flank|ZNF512_uc010ylw.1_5'Flank|ZNF512_uc002rlb.2_5'Flank|ZNF512_uc010ylx.1_5'Flank|ZNF512_uc002rlc.2_5'Flank|ZNF512_uc002rla.2_5'Flank|ZNF512_uc010yly.1_5'Flank|ZNF512_uc010ylz.1_5'Flank	NM_032266	NP_115642	Q68DN1	CB016_HUMAN	hypothetical protein LOC84226	1854	27 X 8 AA approximative tandem repeat of P-S-E-R-S-H-H-S.|Arg-rich.|23.									large_intestine(1)	1	Acute lymphoblastic leukemia(172;0.155)					AGAGCCACCTCAGTCCCTTGG	0.547			NA											17	109					0	0	0.008871	0	0
XDH	7498	broad.mit.edu	37	2	31605971	31605971	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:31605971G>T	uc002rnv.1	-	11	1013	c.934C>A	c.(934-936)CTG>ATG	p.L312M		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	312	FAD-binding PCMH-type.				purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	GCATCCACCAGGGTTTTTTCC	0.498	Colon(66;682 1445 30109 40147)		NA											7	58					0.00448238	0.00478487	0.004482	1	0
CRIM1	51232	broad.mit.edu	37	2	36744595	36744595	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:36744595G>A	uc002rpd.2	+	12	2155	c.2116G>A	c.(2116-2118)GGA>AGA	p.G706R		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	706	VWFC 4.|Extracellular (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				CTGCCACAGCGGACGGGTGCT	0.582			NA											6	104					0	0	0.001984	0	0
CDKL4	344387	broad.mit.edu	37	2	39414835	39414835	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:39414835C>A	uc002rrm.2	-	6	668	c.668G>T	c.(667-669)AGA>ATA	p.R223I	CDKL4_uc010fal.1_Missense_Mutation_p.R223I	NM_001009565	NP_001009565	Q5MAI5	CDKL4_HUMAN	cyclin-dependent kinase-like 4	223	Protein kinase.					cytoplasm	ATP binding|cyclin-dependent protein kinase activity			ovary(1)	1		all_hematologic(82;0.248)				TGATTGATGTCTTGGGATTAA	0.303			NA											18	42					5.3912e-06	6.62947e-06	0.006122	1	0
PSME4	23198	broad.mit.edu	37	2	54122796	54122796	+	Missense_Mutation	SNP	T	T	C	rs139295214		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:54122796T>C	uc002rxp.2	-	33	3822	c.3766A>G	c.(3766-3768)ATA>GTA	p.I1256V	PSME4_uc010yop.1_Missense_Mutation_p.I1142V|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_Missense_Mutation_p.I631V|PSME4_uc010fbv.1_Missense_Mutation_p.I400V	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	1256					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GTTCTTGGTATAGTTTTGCTG	0.398			NA											35	234					0	0	0.003271	0	0
USP34	9736	broad.mit.edu	37	2	61441511	61441511	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:61441511T>A	uc002sbe.2	-	68	8388	c.8366A>T	c.(8365-8367)GAG>GTG	p.E2789V		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	2789					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TATTGCTGGCTCAGAAAGTTT	0.373			NA											16	102					0	0	0.003163	0	0
XPO1	7514	broad.mit.edu	37	2	61721218	61721218	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:61721218A>C	uc002sbj.2	-	12	1784	c.1056T>G	c.(1054-1056)CAT>CAG	p.H352Q	XPO1_uc010fcl.2_Missense_Mutation_p.H348Q|XPO1_uc010ypn.1_Missense_Mutation_p.H348Q|XPO1_uc002sbk.2_5'UTR|XPO1_uc002sbh.2_5'UTR	NM_003400	NP_003391	O14980	XPO1_HUMAN	exportin 1	352	Necessary for HTLV-1 Rex-mediated mRNA export.|Interaction with Ran and nuclear export complex formation.				intracellular protein transport|mitotic prometaphase|mRNA metabolic process|mRNA transport|viral genome transport in host cell|viral infectious cycle	annulate lamellae|Cajal body|cytosol|kinetochore|nuclear envelope|nucleolus|ribonucleoprotein complex	protein binding|protein transporter activity|RNA binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	4			LUSC - Lung squamous cell carcinoma(7;5.71e-05)|Epithelial(17;0.0662)|all cancers(80;0.226)			ACAACATATAATGAAGGGCCT	0.318			NA											4	97					0	0	0.009096	0	0
AFTPH	54812	broad.mit.edu	37	2	64778627	64778627	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:64778627C>T	uc002sdc.2	+	1	51	c.19C>T	c.(19-21)CGA>TGA	p.R7*	AFTPH_uc002scz.2_Nonsense_Mutation_p.R7*|AFTPH_uc002sda.2_Nonsense_Mutation_p.R7*|AFTPH_uc002sdb.2_Nonsense_Mutation_p.R7*	NM_203437	NP_982261	Q6ULP2	AFTIN_HUMAN	aftiphilin protein isoform a	7					protein transport	AP-1 adaptor complex|cytosol|nucleus	clathrin binding			ovary(2)	2						AGACATCATTCGAATGTACTC	0.378			NA											6	126					0	0	0.001168	0	0
PLEK	5341	broad.mit.edu	37	2	68607891	68607891	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:68607891C>A	uc002sen.3	+	3	397	c.235C>A	c.(235-237)CAC>AAC	p.H79N	PLEK_uc010fde.2_Missense_Mutation_p.H79N	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	79	PH 1.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		ACAGCAGGACCACTTCTTCCA	0.468			NA											31	140					1.56442e-22	2.70406e-22	0.012213	1	0
DYSF	8291	broad.mit.edu	37	2	71829926	71829926	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:71829926C>T	uc002sie.2	+	36	4270	c.3894C>T	c.(3892-3894)ATC>ATT	p.I1298I	DYSF_uc010feg.2_Silent_p.I1329I|DYSF_uc010feh.2_Silent_p.I1284I|DYSF_uc002sig.3_Silent_p.I1284I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.I1298I|DYSF_uc010fef.2_Silent_p.I1315I|DYSF_uc010fei.2_Silent_p.I1315I|DYSF_uc010fek.2_Silent_p.I1316I|DYSF_uc010fej.2_Silent_p.I1285I|DYSF_uc010fel.2_Silent_p.I1285I|DYSF_uc010feo.2_Silent_p.I1330I|DYSF_uc010fem.2_Silent_p.I1299I|DYSF_uc010fen.2_Silent_p.I1316I|DYSF_uc002sif.2_Silent_p.I1299I|DYSF_uc010yqy.1_Silent_p.I179I|DYSF_uc010yqz.1_Silent_p.I38I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1298	Cytoplasmic (Potential).		I -> V (in MMD1 and LGMD2B).			cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CATCAAGGATCCTGGATGAGG	0.572			NA											11	45					0	0	0.004007	0	0
MRPL53	116540	broad.mit.edu	37	2	74699773	74699773	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:74699773C>A	uc002sln.2	-	1	155	c.15G>T	c.(13-15)TTG>TTT	p.L5F	CCDC142_uc002slo.2_RNA	NM_053050	NP_444278	Q96EL3	RM53_HUMAN	mitochondrial ribosomal protein L53 precursor	5						mitochondrion|ribosome					0						CAAGCCGAGCCAAGGCAGCTG	0.592			NA											14	47					7.93312e-07	1.01249e-06	0.00245	1	0
DQX1	165545	broad.mit.edu	37	2	74750592	74750592	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:74750592C>T	uc010yrw.1	-	5	1054	c.889G>A	c.(889-891)GTA>ATA	p.V297I	DQX1_uc002smc.2_5'UTR	NM_133637	NP_598376	Q8TE96	DQX1_HUMAN	DEAQ box polypeptide 1 (RNA-dependent ATPase)	297	Helicase C-terminal.					nucleus	ATP binding|helicase activity|nucleic acid binding			ovary(2)	2						AGGGGCAGTACTCGTGGTGGA	0.557			NA											39	135					0	0	0.005524	0	0
REG3G	130120	broad.mit.edu	37	2	79255376	79255376	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:79255376C>T	uc002snw.2	+	6	587	c.502C>T	c.(502-504)CCC>TCC	p.P168S	REG3G_uc002snx.2_Missense_Mutation_p.P168S|REG3G_uc010ffu.2_Missense_Mutation_p.P122S	NM_198448	NP_940850	Q6UW15	REG3G_HUMAN	regenerating islet-derived 3 gamma precursor	168	C-type lectin.				acute-phase response	extracellular region	sugar binding				0						TGCAAAGTTACCCTATGTCTG	0.493			NA											5	102					0	0	0.000602	0	0
FUNDC2P2	388965	broad.mit.edu	37	2	84518273	84518273	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:84518273C>G	uc010ffz.1	+	1	468	c.331C>G	c.(331-333)CCT>GCT	p.P111A		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						GCTGAAGATCCCTAAGAGCAC	0.453			NA											40	81					0	0	0.00623	0	0
ANKRD36B	57730	broad.mit.edu	37	2	98175325	98175325	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:98175325C>G	uc010yvc.1	-	10	1184	c.904G>C	c.(904-906)GAC>CAC	p.D302H	ANKRD36B_uc010yve.1_RNA|ANKRD36B_uc010fif.2_RNA	NM_025190	NP_079466	Q8N2N9	AN36B_HUMAN	ankyrin repeat domain 36B	302											0						TCTTTCTCGTCACTTGTAGCC	0.323			NA											3	50					0	0	0.001168	0	0
TMEM182	130827	broad.mit.edu	37	2	103414427	103414427	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:103414427A>T	uc010fjb.2	+	4	624	c.437A>T	c.(436-438)TAC>TTC	p.Y146F	TMEM182_uc002tcc.3_Missense_Mutation_p.Y103F|TMEM182_uc002tcd.3_Missense_Mutation_p.Y50F|TMEM182_uc010ywe.1_RNA	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	146	Cytoplasmic (Potential).					integral to membrane					0						CATTTTCTCTACAAAGCTGGG	0.488			NA											14	110					0	0	0.001855	0	0
CLASP1	23332	broad.mit.edu	37	2	122106166	122106166	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:122106166C>A	uc002tnc.2	-	37	4725	c.4335G>T	c.(4333-4335)ATG>ATT	p.M1445I	CLASP1_uc010yyv.1_Missense_Mutation_p.M491I|CLASP1_uc002tmz.2_Missense_Mutation_p.M530I|CLASP1_uc002tna.2_Missense_Mutation_p.M491I|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.M1386I|CLASP1_uc010yza.1_Missense_Mutation_p.M1378I|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Missense_Mutation_p.M281I	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1445	Localization to kinetochores.|Interaction with PHLDB2 and RSN.|Interaction with CLIP2 (By similarity).				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CTTTGGTCTGCATCTTGATGG	0.587			NA											3	33					0.00024832	0.000277565	0.009096	1	0
TUBA3D	113457	broad.mit.edu	37	2	132235960	132235960	+	Splice_Site	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:132235960G>A	uc002tsu.3	+	2	333	c.226_splice	c.e2+1	p.D76_splice		NM_080386	NP_525125	Q13748	TBA3C_HUMAN	tubulin, alpha 3d						'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(221;0.13)		ACTGTGGTCGGTAGGTGCCTG	0.597	Ovarian(137;2059 2432 35543 39401)		NA											8	23					0	0	0.008291	0	0
ZRANB3	84083	broad.mit.edu	37	2	135965138	135965138	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:135965138C>G	uc002tum.2	-	19	2992	c.2875G>C	c.(2875-2877)GAA>CAA	p.E959Q	ZRANB3_uc002tuk.2_Missense_Mutation_p.E502Q|ZRANB3_uc002tul.2_Missense_Mutation_p.E957Q	NM_032143	NP_115519	Q5FWF4	ZRAB3_HUMAN	zinc finger, RAN-binding domain containing 3	959						intracellular	ATP binding|DNA binding|endonuclease activity|helicase activity|zinc ion binding			lung(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.135)		TGTTCAGTTTCAAATACTTTG	0.408			NA											22	304					0	0	0.00278	0	0
LRP1B	53353	broad.mit.edu	37	2	141215131	141215131	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:141215131G>T	uc002tvj.1	-	61	10687	c.9715C>A	c.(9715-9717)CGT>AGT	p.R3239S		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3239	Extracellular (Potential).|LDL-receptor class B 32.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTATGGGCACGGCTGAGTGAC	0.438	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			9	122					3.09899e-07	4.05431e-07	0.004482	1	0
LRP1B	53353	broad.mit.edu	37	2	141609221	141609221	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:141609221C>A	uc002tvj.1	-	28	5683	c.4711G>T	c.(4711-4713)GAA>TAA	p.E1571*	LRP1B_uc010fnl.1_Nonsense_Mutation_p.E753*	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1571	Extracellular (Potential).			E -> G (in Ref. 2; AAL38108).	protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGAAATTTACCATAGCAGGTC	0.373	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			7	68					5.18039e-06	6.39282e-06	0.00308	1	0
LRP1B	53353	broad.mit.edu	37	2	141762977	141762977	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:141762977C>A	uc002tvj.1	-	15	3402	c.2430G>T	c.(2428-2430)TTG>TTT	p.L810F	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	810	Extracellular (Potential).|EGF-like 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTGGGATAGCCAAGCAAAGTG	0.433	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			17	72					0.00400662	0.00428577	0.004007	1	0
LRP1B	53353	broad.mit.edu	37	2	141816619	141816619	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:141816619C>T	uc002tvj.1	-	9	2213	c.1241G>A	c.(1240-1242)AGA>AAA	p.R414K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	414	Extracellular (Potential).|LDL-receptor class B 4.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATAAAGATGTCTAACCTATAA	0.303	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			7	114					0	0	0.001984	0	0
KYNU	8942	broad.mit.edu	37	2	143718265	143718265	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:143718265C>T	uc002tvl.2	+	8	785	c.655C>T	c.(655-657)CTG>TTG	p.L219L	KYNU_uc002tvk.2_Silent_p.L219L|KYNU_uc010fnm.2_Silent_p.L219L	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	219					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	TGCAGTGATCCTGTTCAGTGG	0.428			NA											7	110					0	0	0.00308	0	0
GTDC1	79712	broad.mit.edu	37	2	144714812	144714812	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:144714812C>A	uc002tvp.2	-	9	1359	c.1080G>T	c.(1078-1080)ATG>ATT	p.M360I	GTDC1_uc002tvo.2_Intron|GTDC1_uc002tvq.2_Missense_Mutation_p.M242I|GTDC1_uc002tvr.2_Intron|GTDC1_uc010fnn.2_Missense_Mutation_p.M360I|GTDC1_uc002tvs.2_Missense_Mutation_p.M328I|GTDC1_uc010fno.2_Missense_Mutation_p.M231I	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	360					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		CAACATCAGCCATGCACAGTA	0.383			NA											6	55					5.18039e-06	6.39282e-06	0.00308	1	0
GALNT13	114805	broad.mit.edu	37	2	154996906	154996906	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:154996906C>T	uc002tyr.3	+	4	766	c.199C>T	c.(199-201)CCT>TCT	p.P67S	GALNT13_uc002tyt.3_Missense_Mutation_p.P67S|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	67	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						TGTGTTGATTCCTAAAGATGA	0.383			NA											13	38					0	0	0.001855	0	0
GALNT13	114805	broad.mit.edu	37	2	155098649	155098649	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:155098649A>T	uc002tyr.3	+	5	985	c.418A>T	c.(418-420)AAT>TAT	p.N140Y	GALNT13_uc002tyt.3_Missense_Mutation_p.N140Y|GALNT13_uc010foc.1_5'UTR	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	140	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CAGTGTGATAAATCGTTCCCC	0.353			NA											14	42					0	0	0.003163	0	0
PKP4	8502	broad.mit.edu	37	2	159519520	159519520	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:159519520G>C	uc002tzv.2	+	14	2583	c.2323G>C	c.(2323-2325)GAG>CAG	p.E775Q	PKP4_uc002tzt.1_Missense_Mutation_p.E627Q|PKP4_uc002tzu.2_Missense_Mutation_p.E775Q|PKP4_uc002tzw.2_Missense_Mutation_p.E775Q|PKP4_uc002tzx.2_Missense_Mutation_p.E432Q|PKP4_uc002tzy.1_Missense_Mutation_p.E433Q|PKP4_uc002uaa.2_Missense_Mutation_p.E627Q|uc002uab.1_Intron|PKP4_uc002uac.2_5'UTR	NM_003628	NP_003619	Q99569	PKP4_HUMAN	plakophilin 4 isoform a	775					cell adhesion	desmosome	protein binding			ovary(5)|skin(2)	7						ACTAGGAAAAGAGTCTCCCAG	0.488			NA								HNSCC(62;0.18)			20	46					0	0	0.010504	0	0
TTC21B	79809	broad.mit.edu	37	2	166767876	166767876	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:166767876C>T	uc002udk.2	-	18	2555	c.2422G>A	c.(2422-2424)GCA>ACA	p.A808T		NM_024753	NP_079029	Q7Z4L5	TT21B_HUMAN	tetratricopeptide repeat domain 21B	808	TPR 11.					cilium axoneme|cytoplasm|cytoskeleton	binding			ovary(2)|pancreas(2)|breast(1)	5						ACTTTTTCTGCTTTGTCATAC	0.353			NA											7	102					0	0	0.00308	0	0
XIRP2	129446	broad.mit.edu	37	2	168100183	168100183	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:168100183G>A	uc002udx.2	+	8	2299	c.2281G>A	c.(2281-2283)GAC>AAC	p.D761N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D586N|XIRP2_uc010fpq.2_Missense_Mutation_p.D539N|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	586					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TCACAGAGAAGACGTTGAAAA	0.363			NA											6	44					0	0	0.001984	0	0
LRP2	4036	broad.mit.edu	37	2	170092556	170092556	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:170092556C>A	uc002ues.2	-	29	4927	c.4714G>T	c.(4714-4716)GAC>TAC	p.D1572Y		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1572	LDL-receptor class B 12.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGGCCCCAGTCAGACCAGAAC	0.468			NA											4	21					0.00909568	0.00961122	0.009096	1	0
TLK1	9874	broad.mit.edu	37	2	172016919	172016919	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:172016919C>G	uc002ugn.2	-	1	492	c.20G>C	c.(19-21)AGT>ACT	p.S7T	TLK1_uc002ugo.2_Missense_Mutation_p.S7T|TLK1_uc002ugp.2_Intron|TLK1_uc002ugq.2_RNA	NM_012290	NP_036422	Q9UKI8	TLK1_HUMAN	tousled-like kinase 1 isoform 1	7					cell cycle|chromatin modification|intracellular protein transport|intracellular signal transduction|regulation of chromatin assembly or disassembly|response to DNA damage stimulus	nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(1)	1						CAAACTTCCACTGCTACTTTG	0.677			NA											18	123					0	0	0.006122	0	0
DCAF17	80067	broad.mit.edu	37	2	172334560	172334560	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:172334560G>T	uc002ugx.2	+	12	1475	c.1246G>T	c.(1246-1248)GAT>TAT	p.D416Y	DCAF17_uc010zdq.1_RNA|DCAF17_uc010fqf.1_Missense_Mutation_p.D349Y|DCAF17_uc010zdr.1_RNA|DCAF17_uc010fqg.2_Missense_Mutation_p.D136Y	NM_025000	NP_079276	Q5H9S7	DCA17_HUMAN	DDB1 and CUL4 associated factor 17 isoform 1	416						CUL4 RING ubiquitin ligase complex|integral to membrane|nucleolus					0						TAACCTTCTGGATGATGACCC	0.368			NA											11	22					9.31168e-06	1.13435e-05	0.001855	1	0
SLC25A12	8604	broad.mit.edu	37	2	172644379	172644379	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:172644379G>A	uc002uhh.2	-	16	1753	c.1664C>T	c.(1663-1665)ACG>ATG	p.T555M	SLC25A12_uc010fqh.2_Missense_Mutation_p.T448M	NM_003705	NP_003696	O75746	CMC1_HUMAN	solute carrier family 25, member 12	555	Solcar 3.				gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.216)		L-Aspartic Acid(DB00128)	ACTGTATGTCGTCTGGCCAGC	0.557			NA											10	75					0	0	0.008291	0	0
HOXD3	3232	broad.mit.edu	37	2	177036321	177036321	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:177036321G>T	uc002ukt.1	+	3	794	c.618G>T	c.(616-618)CTG>CTT	p.L206L		NM_006898	NP_008829	P31249	HXD3_HUMAN	homeobox D3	206	Homeobox.				anterior/posterior pattern formation|cartilage development|cell-matrix adhesion|embryonic skeletal system morphogenesis|Notch signaling pathway|positive regulation of gene expression|positive regulation of neuron differentiation|thyroid gland development		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			OV - Ovarian serous cystadenocarcinoma(117;0.00569)|Epithelial(96;0.0864)|all cancers(119;0.226)	Colorectal(32;0.247)		GCGCGCAGCTGGTGGAATTGG	0.622			NA											9	67					1.76689e-08	2.40187e-08	0.006214	1	0
HNRNPA3	220988	broad.mit.edu	37	2	178081436	178081436	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:178081436C>T	uc002ulb.1	+	6	782	c.676C>T	c.(676-678)CGC>TGC	p.R226C	HNRNPA3_uc002ulc.1_Missense_Mutation_p.R226C|HNRNPA3_uc002uld.2_Missense_Mutation_p.R204C|HNRNPA3_uc002ule.2_Missense_Mutation_p.R3C	NM_194247	NP_919223	P51991	ROA3_HUMAN	heterogeneous nuclear ribonucleoprotein A3	226	Gly-rich.					catalytic step 2 spliceosome|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(2)	2						TTTTATGGGTCGCGGAGGGAA	0.453			NA											8	202					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179411926	179411926	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179411926G>T	uc010zfg.1	-	289	86846	c.86622C>A	c.(86620-86622)GGC>GGA	p.G28874G	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.G22569G|TTN_uc010zfi.1_Silent_p.G22502G|TTN_uc010zfj.1_Silent_p.G22377G	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	29801							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACCCAGTAGCCAATGATTT	0.443			NA											48	316					1.30916e-28	2.31656e-28	0.00361	1	0
TTN	7273	broad.mit.edu	37	2	179584928	179584928	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179584928A>G	uc010zfg.1	-	78	19933	c.19709T>C	c.(19708-19710)TTA>TCA	p.L6570S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L3231S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7497							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATGGCCCGTAACTCAACAGC	0.428			NA											4	73					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179594626	179594626	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179594626C>A	uc010zfg.1	-	60	14846	c.14622G>T	c.(14620-14622)AGG>AGT	p.R4874S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R1535S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5801							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGTCCATTCCTCAGCACTA	0.388			NA											9	36					7.48243e-07	9.59663e-07	0.006214	1	0
TTN	7273	broad.mit.edu	37	2	179597036	179597036	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179597036G>T	uc010zfg.1	-	54	13152	c.12928C>A	c.(12928-12930)CTG>ATG	p.L4310M	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.L971M	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5237							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTTAACAGCTGTGATGGC	0.388			NA											18	156					2.35188e-11	3.52276e-11	0.006122	1	0
TTN	7273	broad.mit.edu	37	2	179611894	179611894	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179611894C>G	uc002unb.2	-	46	15457	c.15233G>C	c.(15232-15234)GGA>GCA	p.G5078A	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAGAGTCTCTCCTGGGGGTGT	0.552			NA											36	84					0	0	0.003271	0	0
TTN	7273	broad.mit.edu	37	2	179615813	179615813	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179615813T>A	uc002unb.2	-	46	11538	c.11314A>T	c.(11314-11316)AAT>TAT	p.N3772Y	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9609							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCATGTGGATTTTGCACAATA	0.348			NA											29	135					0	0	0.008361	0	0
SESTD1	91404	broad.mit.edu	37	2	179986599	179986599	+	Missense_Mutation	SNP	T	T	A	rs146149735	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179986599T>A	uc002uni.3	-	13	1490	c.1340A>T	c.(1339-1341)AAT>ATT	p.N447I	SESTD1_uc002unh.3_5'UTR	NM_178123	NP_835224	Q86VW0	SESD1_HUMAN	SEC14 and spectrin domains 1	447	Spectrin 2.				regulation of calcium ion transport via voltage-gated calcium channel activity		phosphatidic acid binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylinositol-4-phosphate binding|phosphatidylinositol-5-phosphate binding|protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0344)|Epithelial(96;0.0531)|all cancers(119;0.147)			GGATGCCTGATTGGAGATCTG	0.393			NA											10	60					0	0	0.006214	0	0
ZNF804A	91752	broad.mit.edu	37	2	185801785	185801785	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:185801785G>T	uc002uph.2	+	4	2256	c.1662G>T	c.(1660-1662)AAG>AAT	p.K554N		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	554						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TTTCCTGTAAGATCAGAGAAA	0.338			NA											8	80					0.00307968	0.00330101	0.00308	1	0
ZC3H15	55854	broad.mit.edu	37	2	187366001	187366001	+	Silent	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:187366001T>G	uc002upo.2	+	4	516	c.291T>G	c.(289-291)GGT>GGG	p.G97G		NM_018471	NP_060941	Q8WU90	ZC3HF_HUMAN	erythropoietin 4 immediate early response	97						cytoplasm|nucleolus|plasma membrane	nucleic acid binding|zinc ion binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Epithelial(96;0.0922)|all cancers(119;0.233)			TTGACATAGGTGCAGATCCCA	0.363			NA											21	53					0	0	0.010504	0	0
CALCRL	10203	broad.mit.edu	37	2	188225374	188225374	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:188225374G>T	uc002upv.3	-	10	1280	c.732C>A	c.(730-732)GCC>GCA	p.A244A	CALCRL_uc010frt.2_Silent_p.A244A	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	244	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			CTGCAAACACGGCCACCACAA	0.398			NA											9	59					5.4927e-09	7.63566e-09	0.004482	1	0
CALCRL	10203	broad.mit.edu	37	2	188245443	188245443	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:188245443G>T	uc002upv.3	-	6	804	c.256C>A	c.(256-258)CAG>AAG	p.Q86K	CALCRL_uc010frt.2_Missense_Mutation_p.Q86K	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	86	Extracellular (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			GGGCAGAGCTGCATTGATTCA	0.408			NA											4	59					0.00024832	0.000277565	0.009096	1	0
DIRC1	116093	broad.mit.edu	37	2	189599405	189599405	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:189599405C>T	uc002uqi.1	-	2	514	c.243G>A	c.(241-243)TTG>TTA	p.L81L		NM_052952	NP_443184	Q969H9	DIRC1_HUMAN	disrupted in renal carcinoma 1	81											0			OV - Ovarian serous cystadenocarcinoma(117;0.00842)|Epithelial(96;0.102)			TCACAGTATTCAATTCAGACC	0.403			NA											6	144					0	0	0.001168	0	0
Unknown	0	broad.mit.edu	37	2	190788486	190788486	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:190788486C>A	uc002uro.2	+	1	568	c.425C>A	c.(424-426)CCC>CAC	p.P142H						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;												NA						GCTGTAGTGCCCTCGAAACGT	0.483			NA											52	140					3.86236e-30	6.85766e-30	0.00361	1	0
GLS	2744	broad.mit.edu	37	2	191792198	191792198	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:191792198T>G	uc002usf.2	+	12	1679	c.1415T>G	c.(1414-1416)TTT>TGT	p.F472C	GLS_uc002use.2_Missense_Mutation_p.F472C|GLS_uc002usg.1_Missense_Mutation_p.F133C|GLS_uc002ush.2_Missense_Mutation_p.F133C|GLS_uc010zgi.1_Missense_Mutation_p.F43C|GLS_uc010zgj.1_5'Flank	NM_014905	NP_055720	O94925	GLSK_HUMAN	glutaminase precursor	472					cellular amino acid biosynthetic process|glutamate secretion|glutamine catabolic process|neurotransmitter secretion	mitochondrial matrix	glutaminase activity			ovary(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00625)|Epithelial(96;0.0744)|all cancers(119;0.181)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TCAGGGCAGTTTGCTTTCCAT	0.383			NA											15	68					0	0	0.006122	0	0
DNAH7	56171	broad.mit.edu	37	2	196740521	196740521	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:196740521C>A	uc002utj.3	-	38	6265	c.6164G>T	c.(6163-6165)GGG>GTG	p.G2055V		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2055	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGGTTGAGCCCCATATACCTC	0.403			NA											21	60					1.22574e-08	1.69493e-08	0.002299	1	0
RFTN2	130132	broad.mit.edu	37	2	198436887	198436887	+	Missense_Mutation	SNP	G	G	T	rs138418206		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:198436887G>T	uc002uuo.3	-	9	1753	c.1351C>A	c.(1351-1353)CGC>AGC	p.R451S		NM_144629	NP_653230	Q52LD8	RFTN2_HUMAN	raftlin family member 2	451						plasma membrane					0						GGAGAAAGGCGGCACTCCTCA	0.532			NA											13	101					0.00010058	0.000115011	0.001368	1	0
CASP10	843	broad.mit.edu	37	2	202050751	202050751	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:202050751A>G	uc002uxl.1	+	2	669	c.251A>G	c.(250-252)TAT>TGT	p.Y84C	CASP10_uc002uxi.1_Missense_Mutation_p.Y84C|CASP10_uc010zhn.1_RNA|CASP10_uc002uxj.1_Missense_Mutation_p.Y84C|CASP10_uc002uxk.1_Missense_Mutation_p.Y84C|CASP10_uc010fta.1_Missense_Mutation_p.Y84C|CASP10_uc002uxm.1_Missense_Mutation_p.Y84C|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	84	DED 1.				apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GAACTCCTCTATATCATACGG	0.507			NA											12	54					0	0	0.00245	0	0
CASP10	843	broad.mit.edu	37	2	202074230	202074230	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:202074230G>C	uc002uxl.1	+	9	1778	c.1360G>C	c.(1360-1362)GAA>CAA	p.E454Q	CASP10_uc002uxj.1_Missense_Mutation_p.E454Q|CASP10_uc002uxk.1_Missense_Mutation_p.E411Q|CASP10_uc010fta.1_Missense_Mutation_p.E387Q|CASP10_uc002uxm.1_Missense_Mutation_p.E411Q|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	454					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GCATGTGGAGGAAGGCAGCTG	0.458			NA											14	112					0	0	0.00499	0	0
CTLA4	1493	broad.mit.edu	37	2	204736146	204736146	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:204736146C>A	uc002vak.1	+	3	660	c.503C>A	c.(502-504)GCA>GAA	p.A168E	CTLA4_uc002val.1_Intron|CTLA4_uc010fty.1_Intron|CTLA4_uc010ftz.1_Intron	NM_005214	NP_005205	P16410	CTLA4_HUMAN	cytotoxic T-lymphocyte-associated protein 4	168	Helical; (Potential).				B cell receptor signaling pathway|immune response|negative regulation of B cell proliferation|negative regulation of regulatory T cell differentiation|positive regulation of apoptosis|response to DNA damage stimulus|T cell costimulation	clathrin-coated endocytic vesicle|external side of plasma membrane|Golgi apparatus|integral to plasma membrane|perinuclear region of cytoplasm					0					Abatacept(DB01281)	TGGATCCTTGCAGCAGTTAGT	0.478			NA											10	218					3.86212e-05	4.51013e-05	0.008291	1	0
PIKFYVE	200576	broad.mit.edu	37	2	209188940	209188940	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:209188940A>T	uc002vcz.2	+	18	2423	c.2265A>T	c.(2263-2265)ACA>ACT	p.T755T	PIKFYVE_uc010fun.1_Silent_p.T436T|PIKFYVE_uc002vcy.1_Silent_p.T699T	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	755					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						TTGAGAAAACAGTGTCTCGGA	0.338			NA											6	145					0	0	0.001984	0	0
PTH2R	5746	broad.mit.edu	37	2	209307110	209307110	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:209307110T>A	uc002vdb.2	+	5	646	c.433T>A	c.(433-435)TAT>AAT	p.Y145N	PTH2R_uc010zjb.1_Missense_Mutation_p.Y156N	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	145	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		TGAACGCCTCTATGTAATGTA	0.398			NA											60	196					0	0	0.00361	0	0
ABCA12	26154	broad.mit.edu	37	2	215890417	215890417	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:215890417G>T	uc002vew.2	-	11	1487	c.1267C>A	c.(1267-1269)CCT>ACT	p.P423T	ABCA12_uc002vev.2_Missense_Mutation_p.P105T|ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	423					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AGGACTTCAGGAACTGGAGGA	0.264	Ovarian(66;664 1488 5121 34295)		NA											13	84					3.45872e-05	4.1033e-05	0.004007	1	0
FN1	2335	broad.mit.edu	37	2	216272028	216272028	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:216272028A>G	uc002vfa.2	-	18	2801	c.2535T>C	c.(2533-2535)TAT>TAC	p.Y845Y	FN1_uc002vfb.2_Silent_p.Y845Y|FN1_uc002vfc.2_Silent_p.Y845Y|FN1_uc002vfd.2_Silent_p.Y845Y|FN1_uc002vfe.2_Silent_p.Y845Y|FN1_uc002vff.2_Silent_p.Y845Y|FN1_uc002vfg.2_Silent_p.Y845Y|FN1_uc002vfh.2_Silent_p.Y845Y|FN1_uc002vfi.2_Silent_p.Y845Y|FN1_uc002vfj.2_Silent_p.Y845Y	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	845	Fibronectin type-III 3.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTGATGGCGAATAGACTATTC	0.428			NA											13	133					0	0	0.004007	0	0
MREG	55686	broad.mit.edu	37	2	216861126	216861126	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:216861126C>G	uc002vfo.2	-	2	454	c.158G>C	c.(157-159)TGG>TCG	p.W53S	PECR_uc010zjq.1_RNA|MREG_uc002vfq.2_RNA	NM_018000	NP_060470	Q8N565	MREG_HUMAN	whn-dependent transcript 2	53						apical plasma membrane					0		Renal(323;0.0328)		Epithelial(149;4.64e-07)|all cancers(144;5.56e-05)|LUSC - Lung squamous cell carcinoma(224;0.00832)|Lung(261;0.0111)		GGGCATACTCCATAAATTCTT	0.418			NA											7	110					0	0	0.001984	0	0
TMEM169	92691	broad.mit.edu	37	2	216960771	216960771	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:216960771C>T	uc010zjr.1	+	3	411	c.85C>T	c.(85-87)CTG>TTG	p.L29L	TMEM169_uc010zjs.1_Silent_p.L29L|TMEM169_uc002vfw.2_Silent_p.L29L|TMEM169_uc002vfv.3_Silent_p.L29L	NM_001142310	NP_001135782	Q96HH4	TM169_HUMAN	transmembrane protein 169	29	Extracellular (Potential).					integral to membrane				ovary(1)	1		Renal(323;0.0651)		Epithelial(149;6.44e-06)|all cancers(144;0.000398)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTGCTGCCCTGGCGCTGGA	0.557			NA											20	54					0	0	0.007413	0	0
TNS1	7145	broad.mit.edu	37	2	218695090	218695090	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:218695090C>T	uc002vgt.2	-	21	3420	c.3022G>A	c.(3022-3024)GAG>AAG	p.E1008K	TNS1_uc002vgr.2_Missense_Mutation_p.E1008K|TNS1_uc002vgs.2_Intron|TNS1_uc010zjv.1_Intron	NM_022648	NP_072174	Q9HBL0	TENS1_HUMAN	tensin	1008						cytoplasm|cytoskeleton|focal adhesion	actin binding			ovary(3)|breast(1)	4		Renal(207;0.0483)|Lung NSC(271;0.213)		Epithelial(149;4.43e-06)|all cancers(144;0.000653)|LUSC - Lung squamous cell carcinoma(224;0.0091)|Lung(261;0.013)		GCCCACCTACCTGGCTGGATC	0.567			NA											14	40					0	0	0.003163	0	0
WNT10A	80326	broad.mit.edu	37	2	219754887	219754887	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:219754887G>T	uc002vjd.1	+	3	1021	c.558G>T	c.(556-558)AAG>AAT	p.K186N		NM_025216	NP_079492	Q9GZT5	WN10A_HUMAN	wingless-type MMTV integration site family,	186					anterior/posterior pattern formation|axis specification|canonical Wnt receptor signaling pathway|cellular response to transforming growth factor beta stimulus|female gonad development|hair follicle morphogenesis|odontogenesis|regulation of odontogenesis of dentine-containing tooth|sebaceous gland development|skin development|tongue development|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	G-protein-coupled receptor binding|signal transducer activity			lung(1)|skin(1)	2		Renal(207;0.0474)		Epithelial(149;4.26e-07)|all cancers(144;8.8e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AGCGTGGTAAGGGCCTGAGCC	0.672			NA											7	46					8.12818e-05	9.32508e-05	0.001984	1	0
PTPRN	5798	broad.mit.edu	37	2	220164863	220164863	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:220164863G>T	uc002vkz.2	-	9	1369	c.1280C>A	c.(1279-1281)CCT>CAT	p.P427H	PTPRN_uc010zlc.1_Missense_Mutation_p.P337H|PTPRN_uc002vla.2_Missense_Mutation_p.P427H	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	427	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		AGAGGAGACAGGGCTTGGCAC	0.637			NA											17	99					1.33834e-09	1.8984e-09	0.007413	1	0
STK11IP	114790	broad.mit.edu	37	2	220473845	220473845	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:220473845C>T	uc002vml.2	+	16	1912	c.1869C>T	c.(1867-1869)CCC>CCT	p.P623P	STK11IP_uc010zll.1_Silent_p.P580P|STK11IP_uc002vmm.1_Silent_p.P612P	NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	623					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGGAGCCCCCATCCTCAGTC	0.627			NA											7	4					0	0	0.006214	0	0
STK11IP	114790	broad.mit.edu	37	2	220477938	220477938	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:220477938G>T	uc002vml.2	+	20	2604	c.2561G>T	c.(2560-2562)GGG>GTG	p.G854V		NM_052902	NP_443134	Q8N1F8	S11IP_HUMAN	LKB1 interacting protein	854					protein localization	cytoplasm	protein kinase binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;2.69e-07)|all cancers(144;5.91e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		Aaggtgactggggagatgcgg	0.269			NA											20	37					4.96729e-08	6.66562e-08	0.008871	1	0
SPHKAP	80309	broad.mit.edu	37	2	228846568	228846568	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:228846568A>T	uc002vpq.2	-	12	5015	c.4968T>A	c.(4966-4968)GAT>GAA	p.D1656E	SPHKAP_uc002vpp.2_Missense_Mutation_p.D1627E|SPHKAP_uc010zlx.1_3'UTR	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1656						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCTGCACGACATCTAGAAACT	0.473			NA											15	46					0	0	0.006122	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581233	234581233	+	Nonsense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:234581233T>G	uc002vus.2	+	1	690	c.653T>G	c.(652-654)TTA>TGA	p.L218*	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Nonsense_Mutation_p.L218*	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	218					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	GAGGAACATTTATTATGCCAC	0.433			NA											60	379					0	0	0.00361	0	0
UGT1A7	54577	broad.mit.edu	37	2	234591242	234591242	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:234591242G>T	uc002vut.2	+	1	659	c.659G>T	c.(658-660)TGC>TTC	p.C220F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Missense_Mutation_p.C220F	NM_019077	NP_061950	Q9HAW7	UD17_HUMAN	UDP glycosyltransferase 1 family, polypeptide A7	220					drug metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	drug binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein kinase C binding|retinoic acid binding			ovary(1)	1		Breast(86;0.000765)|all_lung(227;0.00267)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0457)|Lung SC(224;0.128)		Epithelial(121;8.93e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000412)|Lung(119;0.00333)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CATTTATTTTGCCCCTATTTT	0.423			NA											109	246					9.53958e-58	1.73507e-57	0.00361	1	0
UGT1A1	54658	broad.mit.edu	37	2	234669362	234669362	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:234669362C>A	uc002vvb.2	+	1	444	c.429C>A	c.(427-429)AGC>AGA	p.S143R	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Intron|UGT1A4_uc002vux.2_Intron|UGT1A3_uc010znb.1_Intron|UGT1A3_uc002vuy.2_Intron|UGT1A9_uc002vva.2_Intron|UGT1A1_uc010znc.1_Missense_Mutation_p.S143R	NM_000463	NP_000454	P22309	UD11_HUMAN	UDP glycosyltransferase 1 family, polypeptide A1	143					bilirubin conjugation|digestion|estrogen metabolic process|flavone metabolic process|heme catabolic process	endoplasmic reticulum membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding|steroid binding			central_nervous_system(1)|skin(1)	2		Breast(86;0.000766)|all_lung(227;0.00271)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0461)|Lung SC(224;0.128)		Epithelial(121;4.1e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000435)|Lung(119;0.00211)|LUSC - Lung squamous cell carcinoma(224;0.0054)	Abacavir(DB01048)|Adenine(DB00173)|Diclofenac(DB00586)|Estradiol(DB00783)|Ezetimibe(DB00973)|Irinotecan(DB00762)|Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|Propofol(DB00818)|Rifampin(DB01045)|Troglitazone(DB00197)	TGGCAGAAAGCAGCTTTGATG	0.493			NA											12	134					7.93312e-07	1.01249e-06	0.00245	1	0
COL6A3	1293	broad.mit.edu	37	2	238275710	238275710	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:238275710T>C	uc002vwl.2	-	11	5405	c.5120A>G	c.(5119-5121)AAC>AGC	p.N1707S	COL6A3_uc002vwo.2_Missense_Mutation_p.N1501S|COL6A3_uc010znj.1_Missense_Mutation_p.N1100S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1707	VWFA 9.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GACCACTTTGTTGATGGCGTC	0.542			NA											4	32					0	0	0.009096	0	0
RBM44	375316	broad.mit.edu	37	2	238726120	238726120	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:238726120G>T	uc002vxi.3	+	3	693	c.561G>T	c.(559-561)CAG>CAT	p.Q187H		NM_001080504	NP_001073973	Q6ZP01	RBM44_HUMAN	RNA binding motif protein 44	186							nucleotide binding|RNA binding			ovary(4)	4		Breast(86;0.0042)|Renal(207;0.00571)|Ovarian(221;0.17)|all_hematologic(139;0.182)		Epithelial(121;3.74e-22)|OV - Ovarian serous cystadenocarcinoma(60;5.3e-11)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;0.000118)|Lung(119;0.0112)|LUSC - Lung squamous cell carcinoma(224;0.0266)		ACTCACAGCAGGAATATCACA	0.333			NA											7	14					0.00307968	0.00330101	0.00308	1	0
TRAF3IP1	26146	broad.mit.edu	37	2	239237850	239237850	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:239237850G>C	uc002vye.2	+	5	901	c.782G>C	c.(781-783)AGA>ACA	p.R261T	TRAF3IP1_uc002vyf.2_Missense_Mutation_p.R261T	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	261	Abolishes microtubules-binding when missing.|DISC1-interaction domain.|Arg-rich.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		gagaaggagagactgagagac	0.08			NA											3	20					0	0	0.004672	0	0
OR6B2	389090	broad.mit.edu	37	2	240969526	240969526	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:240969526C>G	uc002vyr.2	-	2	367	c.321G>C	c.(319-321)CTG>CTC	p.L107L	OR6B2_uc010zoc.1_Silent_p.L107L	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	107	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CGGTGCACACCAGGGAGCTGA	0.612			NA											6	27					0	0	0.004482	0	0
PDYN	5173	broad.mit.edu	37	20	1961039	1961039	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:1961039C>A	uc010gaj.2	-	3	937	c.695G>T	c.(694-696)CGC>CTC	p.R232L	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.R232L|PDYN_uc010zpt.1_Missense_Mutation_p.R77L	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	232					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity	p.R232H(1)		upper_aerodigestive_tract(1)|ovary(1)	2						CTTGAACTGGCGCCGGAGAAA	0.537			NA											18	176					3.32936e-07	4.35025e-07	0.006122	1	0
VPS16	64601	broad.mit.edu	37	20	2841893	2841893	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:2841893G>A	uc002whe.2	+	8	824	c.776G>A	c.(775-777)TGC>TAC	p.C259Y	VPS16_uc002whh.2_5'Flank|PTPRA_uc002whj.2_5'Flank|VPS16_uc002whf.2_Missense_Mutation_p.C259Y|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_5'Flank|VPS16_uc002whi.2_5'Flank	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	259					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						GAGTTCAACTGCAACATCCGG	0.527			NA											33	120					0	0	0.003271	0	0
ADAM33	80332	broad.mit.edu	37	20	3652837	3652837	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:3652837C>G	uc002wit.2	-	14	1628	c.1541G>C	c.(1540-1542)TGC>TCC	p.C514S	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Missense_Mutation_p.C514S|ADAM33_uc002wis.2_Missense_Mutation_p.C36S|ADAM33_uc002wiu.2_Missense_Mutation_p.C514S|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	514	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GCCATCCCAGCAGTAGCCACT	0.652			NA											30	32					0	0	0.009535	0	0
CDC25B	994	broad.mit.edu	37	20	3781942	3781942	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:3781942C>T	uc002wjn.2	+	8	1525	c.747C>T	c.(745-747)AGC>AGT	p.S249S	CDC25B_uc010zqk.1_Silent_p.S185S|CDC25B_uc010zql.1_Silent_p.S171S|CDC25B_uc010zqm.1_Silent_p.S185S|CDC25B_uc002wjl.2_Silent_p.S137S|CDC25B_uc002wjm.2_Silent_p.S137S|CDC25B_uc002wjo.2_Silent_p.S235S|CDC25B_uc002wjp.2_Silent_p.S208S|CDC25B_uc002wjq.2_Silent_p.S49S|CDC25B_uc010gbc.2_5'Flank	NM_021873	NP_068659	P30305	MPIP2_HUMAN	cell division cycle 25B isoform 1	249					cell division|G2/M transition of mitotic cell cycle|mitosis|positive regulation of cell proliferation	cytosol|microtubule organizing center|nucleoplasm	protein binding|protein tyrosine phosphatase activity			lung(3)|ovary(2)	5						AGGAGCTCAGCCCCCTGGCCC	0.537			NA											9	153					0	0	0.006214	0	0
PLCB4	5332	broad.mit.edu	37	20	9352970	9352970	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:9352970A>T	uc002wnf.2	+	10	742	c.606A>T	c.(604-606)ACA>ACT	p.T202T	PLCB4_uc010gbw.1_Silent_p.T202T|PLCB4_uc010gbx.2_Silent_p.T202T|PLCB4_uc002wne.2_Silent_p.T202T|PLCB4_uc002wnh.2_Silent_p.T49T	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	202					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTGAGCCCACAGCATTTTCTT	0.368			NA											6	89					0	0	0.001168	0	0
PLCB4	5332	broad.mit.edu	37	20	9368109	9368109	+	Splice_Site	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:9368109G>T	uc002wnf.2	+	14	1201	c.1065_splice	c.e14-1	p.R355_splice	PLCB4_uc010gbw.1_Splice_Site_p.R355_splice|PLCB4_uc010gbx.2_Splice_Site_p.R355_splice|PLCB4_uc002wne.2_Splice_Site_p.R355_splice|PLCB4_uc002wnh.2_Splice_Site_p.R202_splice	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b						intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TATATCCCTAGATGTGTTGAA	0.318			NA											43	58					3.21987e-24	5.62131e-24	0.00361	1	0
PAK7	57144	broad.mit.edu	37	20	9546931	9546931	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:9546931G>A	uc002wnl.2	-	6	1636	c.1091C>T	c.(1090-1092)TCG>TTG	p.S364L	PAK7_uc002wnk.2_Missense_Mutation_p.S364L|PAK7_uc002wnj.2_Missense_Mutation_p.S364L|PAK7_uc010gby.1_Missense_Mutation_p.S364L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	364	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GGAATAGCCCGATTTGCTTTG	0.562			NA											9	197					0	0	0.006214	0	0
KIF16B	55614	broad.mit.edu	37	20	16316589	16316589	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:16316589C>T	uc002wpg.1	-	24	3851	c.3693G>A	c.(3691-3693)TTG>TTA	p.L1231L	KIF16B_uc002wpe.1_Intron|KIF16B_uc002wpf.1_Silent_p.L572L|KIF16B_uc010gch.1_Silent_p.L1180L	NM_024704	NP_078980	Q96L93	KI16B_HUMAN	kinesin-like motor protein C20orf23	1231	PX.				cell communication|early endosome to late endosome transport|endoderm development|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|formation of primary germ layer|Golgi to endosome transport|microtubule-based movement|receptor catabolic process|regulation of receptor recycling	early endosome membrane|microtubule	ATP binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|plus-end-directed microtubule motor activity			skin(2)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|ovary(1)|kidney(1)	8						ACTTTAACTTCAATGTTTTAT	0.323			NA											43	167					0	0	0.010771	0	0
CD93	22918	broad.mit.edu	37	20	23065301	23065301	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:23065301G>T	uc002wsv.2	-	1	1677	c.1529C>A	c.(1528-1530)CCC>CAC	p.P510H		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	510	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TGTAGCCTTGGGGGTGCCCTC	0.647			NA											34	114					5.04308e-16	8.26527e-16	0.00623	1	0
FRG1B	284802	broad.mit.edu	37	20	29628299	29628299	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:29628299A>G	uc010ztl.1	+	3	243	c.211A>G	c.(211-213)AGT>GGT	p.S71G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Missense_Mutation_p.S23G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						AGAAGCAAAAAGTAAAACAGC	0.363			NA											3	53					0	0	0.004482	0	0
C20orf186	149954	broad.mit.edu	37	20	31671171	31671171	+	Splice_Site	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:31671171A>T	uc010zue.1	+	3	185	c.170_splice	c.e3-2	p.G57_splice		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor							cytoplasm|extracellular region	lipid binding				0						AATTCCCCCGAGGTGTTGGTG	0.373			NA											16	122					0	0	0.004007	0	0
PXMP4	11264	broad.mit.edu	37	20	32298426	32298426	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:32298426C>T	uc002wzv.2	-	3	433	c.310G>A	c.(310-312)GCA>ACA	p.A104T	PXMP4_uc002wzw.2_Intron|PXMP4_uc010zuh.1_Silent_p.T110T	NM_007238	NP_009169	Q9Y6I8	PXMP4_HUMAN	peroxisomal membrane protein 4 isoform a	104	Helical; (Potential).					integral to membrane|membrane fraction|mitochondrial inner membrane|peroxisomal membrane	protein transporter activity				0						GCCAGGAATGCGTGTGCTGGG	0.542			NA											6	65					0	0	0.001984	0	0
SLC32A1	140679	broad.mit.edu	37	20	37357066	37357066	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:37357066G>T	uc002xjc.2	+	2	1625	c.1362G>T	c.(1360-1362)GCG>GCT	p.A454A		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	454	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	CGCACTTCGCGCTGCTCATGG	0.677			NA											19	33					4.35082e-09	6.09698e-09	0.010504	1	0
FAM83D	81610	broad.mit.edu	37	20	37580398	37580398	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:37580398G>C	uc002xjg.2	+	4	1124	c.1083G>C	c.(1081-1083)CGG>CGC	p.R361R		NM_030919	NP_112181	Q9H4H8	FA83D_HUMAN	hypothetical protein LOC81610	331					cell division|mitosis	cytoplasm|spindle pole				ovary(3)	3		Myeloproliferative disorder(115;0.00878)				ACCTGCTGCGGATGCGGCTGG	0.597			NA											22	66					0	0	0.002299	0	0
JPH2	57158	broad.mit.edu	37	20	42744380	42744380	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:42744380C>G	uc002xli.1	-	4	2808	c.1935G>C	c.(1933-1935)CTG>CTC	p.L645L		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	645	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CCGCCTTGGTCAGCCCTCGAG	0.682			NA											8	28					0	0	0.004482	0	0
PREX1	57580	broad.mit.edu	37	20	47364366	47364366	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:47364366G>T	uc002xtw.1	-	2	294	c.271C>A	c.(271-273)CTC>ATC	p.L91I		NM_020820	NP_065871	Q8TCU6	PREX1_HUMAN	phosphatidylinositol-3,4,	91	DH.				actin filament polymerization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|neutrophil activation|small GTPase mediated signal transduction|superoxide metabolic process	cytosol|plasma membrane	enzyme binding|phospholipid binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(3)|ovary(2)|pancreas(1)	6			BRCA - Breast invasive adenocarcinoma(12;0.0135)|Colorectal(8;0.198)			TCCTCCGTGAGGCCCTTCTCC	0.602			NA											10	26					6.40141e-05	7.4174e-05	0.010729	1	0
ZNFX1	57169	broad.mit.edu	37	20	47888037	47888037	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:47888037C>T	uc002xui.2	-	3	559	c.312G>A	c.(310-312)AGG>AGA	p.R104R		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	104							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CATTTCTCCACCTGGTGTCAT	0.572			NA											54	285					0	0	0.00361	0	0
ZNF217	7764	broad.mit.edu	37	20	52193386	52193386	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:52193386G>C	uc002xwq.3	-	3	2188	c.1917C>G	c.(1915-1917)CTC>CTG	p.L639L	ZNF217_uc010gij.1_Silent_p.L631L	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	639					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			TTCTACAGATGAGGTTATTTG	0.478			NA											12	292					0	0	0.001368	0	0
C20orf85	128602	broad.mit.edu	37	20	56735845	56735845	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:56735845A>T	uc002xyv.2	+	4	419	c.381A>T	c.(379-381)CGA>CGT	p.R127R		NM_178456	NP_848551	Q9H1P6	CT085_HUMAN	hypothetical protein LOC128602	127										ovary(1)	1	all_epithelial(3;5.99e-14)|Lung NSC(12;0.000152)|all_lung(29;0.000518)|Melanoma(10;0.118)		BRCA - Breast invasive adenocarcinoma(13;5.53e-12)|Epithelial(14;7.42e-08)|all cancers(14;7.19e-07)			CTTTTGCACGAGAGCTGTGCT	0.612			NA											5	55					0	0	0.001168	0	0
ZNF831	128611	broad.mit.edu	37	20	57767923	57767923	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:57767923C>A	uc002yan.2	+	1	1849	c.1849C>A	c.(1849-1851)CAG>AAG	p.Q617K		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	617						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GATGTTCTCCCAGGAGAAGTG	0.587			NA											34	83					3.09479e-21	5.33161e-21	0.006999	1	0
C20orf177	63939	broad.mit.edu	37	20	58519045	58519045	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:58519045C>G	uc002yba.2	+	5	462	c.47C>G	c.(46-48)TCT>TGT	p.S16C	C20orf177_uc010zzx.1_Intron|C20orf177_uc002ybc.2_Missense_Mutation_p.S16C	NM_022106	NP_071389	Q9NTX9	CT177_HUMAN	hypothetical protein LOC63939	16										ovary(2)|breast(1)	3	all_lung(29;0.00693)		BRCA - Breast invasive adenocarcinoma(7;1.22e-08)			TCAAAGAATTCTTCAGGAAAA	0.418			NA											6	63					0	0	0.001168	0	0
CDH26	60437	broad.mit.edu	37	20	58559697	58559697	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:58559697A>T	uc002ybe.2	+	6	845	c.545A>T	c.(544-546)CAA>CTA	p.Q182L	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	182	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			TTTCTAGGGCAACCTATTTTT	0.338			NA											10	118					0	0	0.008291	0	0
DIDO1	11083	broad.mit.edu	37	20	61513083	61513083	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:61513083C>A	uc002ydr.1	-	16	4489	c.4225G>T	c.(4225-4227)GAG>TAG	p.E1409*	DIDO1_uc002yds.1_Nonsense_Mutation_p.E1409*	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1409					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTTTCCACCTCGTGGCGCCGC	0.602	Melanoma(25;381 482 3385 5362 7955 17159 17174 40604 47095)		NA											16	148					5.01169e-05	5.84604e-05	0.00499	1	0
OPRL1	4987	broad.mit.edu	37	20	62729793	62729793	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr20:62729793C>T	uc002yic.2	+	5	1156	c.754C>T	c.(754-756)CGA>TGA	p.R252*	OPRL1_uc002yid.2_Nonsense_Mutation_p.R252*|OPRL1_uc002yif.3_Nonsense_Mutation_p.R247*	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	252	Cytoplasmic (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					CTCGGGCTCCCGAGAGAAGGA	0.637			NA											11	137					0	0	0.001855	0	0
DSCAM	1826	broad.mit.edu	37	21	41450679	41450679	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:41450679C>A	uc002yyq.1	-	26	5098	c.4646G>T	c.(4645-4647)CGG>CTG	p.R1549L	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1549	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GTTGCACACCCGCATCTGCAG	0.572	Melanoma(134;970 1778 1785 21664 32388)		NA											10	27					4.68919e-08	6.30865e-08	0.008291	1	0
DSCAM	1826	broad.mit.edu	37	21	41719760	41719760	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:41719760G>T	uc002yyq.1	-	6	1499	c.1047C>A	c.(1045-1047)CGC>CGA	p.R349R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	349	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TTTCACCATTGCGGTACCAGG	0.507	Melanoma(134;970 1778 1785 21664 32388)		NA											56	109					1.13205e-32	2.02373e-32	0.00361	1	0
FAM3B	54097	broad.mit.edu	37	21	42718992	42718992	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:42718992G>T	uc002yzb.1	+	6	596	c.450G>T	c.(448-450)CTG>CTT	p.L150L	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Silent_p.L102L|FAM3B_uc002yzd.1_Silent_p.L173L	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	150					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				CAAAATCCCTGCTCTTCATGG	0.527			NA											49	80					2.64514e-33	4.74488e-33	0.00361	1	0
UBASH3A	53347	broad.mit.edu	37	21	43838595	43838595	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:43838595C>T	uc002zbe.2	+	7	959	c.923C>T	c.(922-924)ACG>ATG	p.T308M	UBASH3A_uc002zbf.2_Missense_Mutation_p.T270M|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Missense_Mutation_p.T270M	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	308	SH3.					cytosol|nucleus				ovary(3)	3						GTGGACCCCACGCAGCAGGAC	0.582			NA											11	83					0	0	0.008291	0	0
KRTAP10-3	386682	broad.mit.edu	37	21	45978250	45978250	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:45978250G>T	uc002zfj.1	-	1	394	c.349C>A	c.(349-351)CCT>ACT	p.P117T	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198696	NP_941969	P60369	KR103_HUMAN	keratin associated protein 10-3	117	10.|18 X 5 AA repeats of C-C-X(3).					keratin filament				skin(1)	1						cagcagacaggcttgcagcag	0.199			NA											86	149					1.80454e-33	3.24259e-33	0.00361	1	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086610	46086610	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:46086610C>G	uc002zfu.2	-	1	235	c.194G>C	c.(193-195)TGT>TCT	p.C65S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	65	23 X 5 AA approximate repeats.|10.					keratin filament					0						CATGGGCACACACACAGAAGA	0.627			NA											22	41					0	0	0.002299	0	0
PCNT	5116	broad.mit.edu	37	21	47773118	47773118	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:47773118G>A	uc002zji.3	+	10	1664	c.1557G>A	c.(1555-1557)CTG>CTA	p.L519L	PCNT_uc002zjj.2_Silent_p.L401L	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	519	Glu-rich.|Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					TGGAGCAACTGAGGATTTATT	0.493			NA											6	60					0	0	0.001168	0	0
PCNT	5116	broad.mit.edu	37	21	47819700	47819700	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr21:47819700G>T	uc002zji.3	+	25	4888	c.4781G>T	c.(4780-4782)GGG>GTG	p.G1594V	PCNT_uc002zjj.2_Missense_Mutation_p.G1476V	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1594	Potential.				cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					ATCGTGAAAGGGCTGGAACAG	0.522			NA											6	88					5.9392e-07	7.67392e-07	0.001168	1	0
HIRA	7290	broad.mit.edu	37	22	19376025	19376025	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr22:19376025G>C	uc002zpf.1	-	10	1209	c.989C>G	c.(988-990)TCC>TGC	p.S330C	HIRA_uc011agx.1_Missense_Mutation_p.S196C|HIRA_uc010grn.1_Missense_Mutation_p.S330C|HIRA_uc010gro.1_Missense_Mutation_p.S286C|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	330	WD 7.				chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					ATCCATGATGGATTTGTCAAA	0.443			NA											3	38					0	0	0.009096	0	0
MYO18B	84700	broad.mit.edu	37	22	26400768	26400768	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr22:26400768T>C	uc003abz.1	+	42	6667	c.6417T>C	c.(6415-6417)ACT>ACC	p.T2139T	MYO18B_uc003aca.1_Silent_p.T2020T|MYO18B_uc010guy.1_Silent_p.T2021T|MYO18B_uc010guz.1_Silent_p.T2019T|MYO18B_uc011aka.1_Silent_p.T1293T|MYO18B_uc011akb.1_Silent_p.T1652T|MYO18B_uc010gva.1_Silent_p.T122T	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2139						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCACAGATACTATGAGGACTC	0.542			NA											5	98					0	0	0.001168	0	0
TPST2	8459	broad.mit.edu	37	22	26937214	26937214	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr22:26937214A>C	uc003acv.2	-	2	551	c.383T>G	c.(382-384)GTG>GGG	p.V128G	TPST2_uc003acw.2_Missense_Mutation_p.V128G|TPST2_uc003acx.2_Missense_Mutation_p.V128G|TPST2_uc011akf.1_Missense_Mutation_p.V128G	NM_003595	NP_003586	O60704	TPST2_HUMAN	tyrosylprotein sulfotransferase 2	128	Lumenal (Potential).				peptidyl-tyrosine sulfation	endoplasmic reticulum|Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity			central_nervous_system(1)	1						CTCATCCGTCACCCCCGCCTC	0.672			NA											6	9					0	0	0.010729	0	0
C22orf28	51493	broad.mit.edu	37	22	32792114	32792114	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr22:32792114C>T	uc003amm.2	-	8	1068	c.937G>A	c.(937-939)GCT>ACT	p.A313T	C22orf28_uc011ama.1_RNA	NM_014306	NP_055121	Q9Y3I0	RTCB_HUMAN	hypothetical protein LOC51493	313					cell-matrix adhesion|substrate adhesion-dependent cell spreading|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|tRNA-splicing ligase complex	ATP binding|metal ion binding|RNA ligase (ATP) activity|vinculin binding				0						TAGTTCCCAGCAGCTGCCATT	0.493			NA											81	190					0	0	0.00361	0	0
ELFN2	114794	broad.mit.edu	37	22	37770693	37770693	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr22:37770693C>A	uc003asq.3	-	3	1668	c.882G>T	c.(880-882)TCG>TCT	p.S294S		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	294	Fibronectin type-III.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					CTGGCCCTGCCGACGCATCCG	0.637			NA											44	102					1.17962e-10	1.72724e-10	0.00874	1	0
CHL1	10752	broad.mit.edu	37	3	440829	440829	+	Nonsense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:440829C>G	uc003bou.2	+	25	3606	c.3335C>G	c.(3334-3336)TCA>TGA	p.S1112*	CHL1_uc003bot.2_Nonsense_Mutation_p.S1128*|CHL1_uc003bow.1_Nonsense_Mutation_p.S1112*|CHL1_uc011asi.1_Nonsense_Mutation_p.S1075*	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	1112	Cytoplasmic (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		GGAAAGTACTCAGGTAAAATT	0.338			NA											11	65					0	0	0.010729	0	0
CNTN6	27255	broad.mit.edu	37	3	1424739	1424739	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:1424739G>C	uc003boz.2	+	18	2547	c.2280G>C	c.(2278-2280)AGG>AGC	p.R760S	CNTN6_uc011asj.1_Missense_Mutation_p.R688S|CNTN6_uc003bpa.2_Missense_Mutation_p.R760S	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	760	Fibronectin type-III 2.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		AATCATCAAGGTTTGTCTACA	0.458			NA											25	85					0	0	0.003954	0	0
C3orf32	51066	broad.mit.edu	37	3	8673789	8673789	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:8673789G>T	uc003bqu.2	-	5	526	c.280C>A	c.(280-282)CTG>ATG	p.L94M	C3orf32_uc003bqz.2_Missense_Mutation_p.L94M|C3orf32_uc003bqt.2_Missense_Mutation_p.L43M|C3orf32_uc011atg.1_Missense_Mutation_p.L116M|C3orf32_uc003bqv.2_Missense_Mutation_p.L43M|C3orf32_uc003bqw.2_RNA|C3orf32_uc003bqx.2_RNA|C3orf32_uc003bqy.2_Missense_Mutation_p.L94M	NM_015931	NP_057015	Q9Y2M2	CC032_HUMAN	hypothetical protein LOC51066	94										skin(1)	1						AAGGTCTCCAGACGGTACTAA	0.423			NA											7	30					0.00307968	0.00330101	0.00308	1	0
TSEN2	80746	broad.mit.edu	37	3	12560662	12560662	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:12560662G>T	uc003bxc.2	+	8	1452	c.1065G>T	c.(1063-1065)GTG>GTT	p.V355V	TSEN2_uc003bwy.2_Silent_p.V355V|TSEN2_uc003bwz.2_Silent_p.V296V|TSEN2_uc003bxa.2_Silent_p.V329V|TSEN2_uc011auq.1_Silent_p.V329V|TSEN2_uc003bxb.2_Silent_p.V355V|TSEN2_uc011aur.1_Silent_p.V264V	NM_025265	NP_079541	Q8NCE0	SEN2_HUMAN	tRNA-intron nuclease 2 isoform 1	355					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	cytoplasm|nucleolus|tRNA-intron endonuclease complex	nucleic acid binding|tRNA-intron endonuclease activity			central_nervous_system(1)	1						AGGGCTGGGTGCCCAAAGTGG	0.448			NA											34	113					1.26612e-14	2.01498e-14	0.003271	1	0
IQSEC1	9922	broad.mit.edu	37	3	12950781	12950781	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:12950781C>A	uc003bxt.2	-	11	2621	c.2612G>T	c.(2611-2613)AGG>ATG	p.R871M	IQSEC1_uc003bxu.3_Missense_Mutation_p.R749M|IQSEC1_uc011auw.1_Missense_Mutation_p.R857M	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	871	Potential.				regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						ACACTCTATCCTGTGCTTCTC	0.542			NA											29	141					8.16721e-17	1.35128e-16	0.010818	1	0
KCNH8	131096	broad.mit.edu	37	3	19554549	19554549	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:19554549G>T	uc003cbk.1	+	13	2362	c.2167G>T	c.(2167-2169)GAG>TAG	p.E723*	KCNH8_uc010hex.1_Nonsense_Mutation_p.E184*	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	723	Poly-Glu.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						ggaggaagaggaggCAGTCTC	0.388	NSCLC(124;1625 1765 8018 24930 42026)		NA											11	36					1.58986e-06	2.00704e-06	0.008291	1	0
DYNC1LI1	51143	broad.mit.edu	37	3	32587436	32587436	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:32587436G>C	uc003cfb.3	-	3	330	c.242C>G	c.(241-243)ACA>AGA	p.T81R	DYNC1LI1_uc011axh.1_Intron	NM_016141	NP_057225	Q9Y6G9	DC1L1_HUMAN	dynein, cytoplasmic 1, light intermediate chain	81	ATP (Potential).				cell division|interspecies interaction between organisms|mitosis|positive regulation of mitotic cell cycle spindle assembly checkpoint|transport	centrosome|condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|plasma membrane|spindle pole	ATP binding|motor activity			ovary(1)	1						TATTAAGCTTGTTTTTCCAGC	0.323			NA											3	55					0	0	0.004672	0	0
ARPP21	10777	broad.mit.edu	37	3	35785456	35785456	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:35785456A>T	uc003cgb.2	+	18	2295	c.2031A>T	c.(2029-2031)GCA>GCT	p.A677A	ARPP21_uc003cga.2_Silent_p.A658A|ARPP21_uc011axy.1_Silent_p.A678A|ARPP21_uc003cgf.2_Silent_p.A513A|ARPP21_uc003cgg.2_Silent_p.A200A|uc011axz.1_5'Flank|MIR128-2_hsa-mir-128-2|MI0000727_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	677	Gln-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CACAGCAAGCAGGTACTTGGA	0.498			NA											6	93					0	0	0.001168	0	0
STAC	6769	broad.mit.edu	37	3	36485037	36485037	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:36485037G>T	uc003cgh.1	+	2	332	c.293G>T	c.(292-294)AGG>ATG	p.R98M	STAC_uc010hgd.1_RNA|STAC_uc011aya.1_Missense_Mutation_p.R98M	NM_003149	NP_003140	Q99469	STAC_HUMAN	SH3 and cysteine rich domain	98					intracellular signal transduction	cytoplasm|soluble fraction	metal ion binding			skin(2)|ovary(1)|pancreas(1)	4						ACACCCGCCAGGGCTGGTCTG	0.552			NA											24	84					3.28513e-13	5.07348e-13	0.003954	1	0
ULK4	54986	broad.mit.edu	37	3	41953149	41953149	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:41953149C>A	uc003ckv.3	-	10	1100	c.899G>T	c.(898-900)AGA>ATA	p.R300I	ULK4_uc003ckw.2_Missense_Mutation_p.R300I|ULK4_uc003ckx.1_Missense_Mutation_p.R300I	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	300							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CATAGTGTTTCTGCTATTATT	0.388			NA											19	84					4.35082e-09	6.09698e-09	0.010504	1	0
WDR6	11180	broad.mit.edu	37	3	49049969	49049969	+	Silent	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:49049969A>C	uc003cvj.2	+	2	1230	c.1092A>C	c.(1090-1092)GGA>GGC	p.G364G	WDR6_uc011bbx.1_Silent_p.G235G|WDR6_uc011bby.1_Intron|WDR6_uc010hkn.2_Silent_p.G308G|WDR6_uc011bbz.1_Silent_p.G283G	NM_018031	NP_060501	Q9NNW5	WDR6_HUMAN	WD repeat domain 6 protein	334	WD 5.				cell cycle arrest|negative regulation of cell proliferation	cytoplasm				central_nervous_system(1)	1				Kidney(197;9.12e-07)|KIRC - Kidney renal clear cell carcinoma(197;1.32e-05)|BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000155)		GGTACCGGGGATTGGGGGTCT	0.612			NA											4	79					0	0	0.000602	0	0
C3orf67	200844	broad.mit.edu	37	3	58849577	58849577	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:58849577G>C	uc003dkt.1	-	12	1334	c.925C>G	c.(925-927)CTG>GTG	p.L309V	C3orf67_uc003dks.1_Missense_Mutation_p.L124V|uc003dku.1_Intron|C3orf67_uc003dkv.1_Missense_Mutation_p.L124V|C3orf67_uc003dkw.2_Missense_Mutation_p.L204V	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	309											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		CTGGATGCCAGATATGAAATG	0.433			NA											3	75					0	0	0.004672	0	0
ROBO1	6091	broad.mit.edu	37	3	78717633	78717633	+	Splice_Site	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:78717633C>A	uc003dqe.2	-	12	1838	c.1630_splice	c.e12+1	p.E544_splice	ROBO1_uc003dqb.2_Splice_Site_p.E505_splice|ROBO1_uc003dqc.2_Splice_Site_p.E508_splice|ROBO1_uc003dqd.2_Splice_Site_p.E508_splice|ROBO1_uc010hoh.2_5'UTR|ROBO1_uc011bgl.1_Splice_Site_p.E116_splice|ROBO1_uc003dqf.1_Splice_Site_p.E223_splice	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a						activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		ATTTACTTTACCTTGAACTTC	0.428			NA											12	48					9.05144e-12	1.36754e-11	0.001855	1	0
EPHA3	2042	broad.mit.edu	37	3	89390222	89390222	+	Splice_Site	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:89390222G>A	uc003dqy.2	+	4	1195	c.970_splice	c.e4+1	p.R324_splice	EPHA3_uc003dqx.1_Splice_Site_p.R324_splice|EPHA3_uc010hon.1_Splice_Site	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor							extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GCTTGTACCCGTGAGTAGTTT	0.443			NA								TSP Lung(6;0.00050)			5	183					0	0	0.000602	0	0
PROS1	5627	broad.mit.edu	37	3	93619732	93619732	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:93619732C>T	uc003drb.3	-	7	984	c.643G>A	c.(643-645)GCT>ACT	p.A215T	PROS1_uc010hoo.2_Missense_Mutation_p.A84T|PROS1_uc003dqz.3_Missense_Mutation_p.A84T	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	215	EGF-like 3; calcium-binding (Potential).				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TTGCACACAGCTGTGCCACAA	0.388			NA											16	43					0	0	0.003163	0	0
NSUN3	63899	broad.mit.edu	37	3	93802949	93802949	+	Splice_Site	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:93802949A>T	uc003drl.1	+	3	239	c.123_splice	c.e3-2	p.R41_splice		NM_022072	NP_071355	Q9H649	NSUN3_HUMAN	NOL1/NOP2/Sun domain family, member 3								methyltransferase activity			skin(1)	1						TTCTATTTCTAGGGAGATACT	0.328			NA											10	33					0	0	0.006214	0	0
EPHA6	285220	broad.mit.edu	37	3	97311551	97311551	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:97311551G>T	uc010how.1	+	12	2525	c.2482G>T	c.(2482-2484)GGA>TGA	p.G828*	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Nonsense_Mutation_p.G194*|EPHA6_uc003drs.3_Nonsense_Mutation_p.G220*|EPHA6_uc003drr.3_Nonsense_Mutation_p.G220*|EPHA6_uc003drt.2_Nonsense_Mutation_p.G220*|EPHA6_uc010hox.1_Intron	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	733	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						AGTGCCAGGGGGAGGATCTTT	0.542			NA											12	41					1.5842e-08	2.17619e-08	0.001855	1	0
CRYBG3	131544	broad.mit.edu	37	3	97605523	97605523	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:97605523T>C	uc003drx.2	+	5	1421	c.1357T>C	c.(1357-1359)TGT>CGT	p.C453R		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						TGACCCAGCCTGTTGTCCTGT	0.418			NA											8	161					0	0	0.006214	0	0
OR5H15	403274	broad.mit.edu	37	3	97887750	97887750	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:97887750G>A	uc011bgu.1	+	1	207	c.207G>A	c.(205-207)GTG>GTA	p.V69V		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TAGCTTTTGTGGATGCTTGGA	0.398			NA											36	175					0	0	0.00361	0	0
OR5H15	403274	broad.mit.edu	37	3	97888436	97888436	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:97888436T>G	uc011bgu.1	+	1	893	c.893T>G	c.(892-894)ATA>AGA	p.I298R		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAGCAAGTCATAGTTTCATTC	0.318			NA											4	101					0	0	0.009096	0	0
OR5K4	403278	broad.mit.edu	37	3	98072782	98072782	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:98072782G>T	uc011bgv.1	+	1	85	c.85G>T	c.(85-87)GTG>TTG	p.V29L		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						GCTTCTGTTTGTGGTGTTCTC	0.443			NA											38	245					6.97489e-18	1.1707e-17	0.004878	1	0
IMPG2	50939	broad.mit.edu	37	3	100976422	100976422	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:100976422C>G	uc003duq.1	-	10	1307	c.1104G>C	c.(1102-1104)CTG>CTC	p.L368L	IMPG2_uc011bhe.1_Silent_p.L231L	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	368	Extracellular (Potential).				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						AAGAGTTCCCCAGCAAAAAAT	0.398			NA											42	144					0	0	0.006999	0	0
PHLDB2	90102	broad.mit.edu	37	3	111603652	111603652	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:111603652G>T	uc010hqa.2	+	2	1139	c.728G>T	c.(727-729)AGC>ATC	p.S243I	PHLDB2_uc003dyc.2_Missense_Mutation_p.S270I|PHLDB2_uc003dyd.2_Missense_Mutation_p.S243I|PHLDB2_uc003dyg.2_Missense_Mutation_p.S243I|PHLDB2_uc003dyh.2_Missense_Mutation_p.S243I|PHLDB2_uc003dye.3_Missense_Mutation_p.S243I|PHLDB2_uc003dyf.3_Missense_Mutation_p.S243I	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	243						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AAGTACTCCAGCAGCAGCCTG	0.498			NA											23	85					3.28513e-13	5.07348e-13	0.003954	1	0
PHLDB2	90102	broad.mit.edu	37	3	111686524	111686524	+	Splice_Site	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:111686524G>T	uc010hqa.2	+	15	3580	c.3169_splice	c.e15-1	p.E1057_splice	PHLDB2_uc003dyc.2_Splice_Site_p.E1041_splice|PHLDB2_uc003dyd.2_Splice_Site_p.E1014_splice|PHLDB2_uc003dyg.2_Splice_Site_p.E1057_splice|PHLDB2_uc003dyh.2_Splice_Site_p.E1014_splice|PHLDB2_uc003dyi.2_Splice_Site_p.E548_splice|PHLDB2_uc003dyj.2_Splice_Site_p.E112_splice	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,							cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						ATAATGTTTAGGAACGGGAAA	0.368			NA											3	25					6.4e-05	7.4174e-05	0.004672	1	0
GOLGB1	2804	broad.mit.edu	37	3	121417301	121417301	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:121417301T>A	uc003eei.3	-	13	2180	c.2054A>T	c.(2053-2055)GAG>GTG	p.E685V	GOLGB1_uc010hrc.2_Missense_Mutation_p.E690V|GOLGB1_uc003eej.3_Missense_Mutation_p.E651V|GOLGB1_uc011bjm.1_Missense_Mutation_p.E571V|GOLGB1_uc010hrd.1_Missense_Mutation_p.E649V	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	685	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		CCTTTCCAACTCATCCTGATG	0.343			NA											11	85					0	0	0.010729	0	0
COL6A6	131873	broad.mit.edu	37	3	130284269	130284269	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:130284269C>A	uc010htl.2	+	3	1124	c.1093C>A	c.(1093-1095)CTG>ATG	p.L365M		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	365	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CATCTTCACCCTGGGCATAGA	0.572			NA											20	147					1.2644e-06	1.6098e-06	0.010504	1	0
CEP63	80254	broad.mit.edu	37	3	134251670	134251670	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:134251670G>T	uc003eqo.1	+	6	818	c.369G>T	c.(367-369)AGG>AGT	p.R123S	CEP63_uc003eql.1_Missense_Mutation_p.R123S|CEP63_uc003eqm.2_Missense_Mutation_p.R123S|CEP63_uc003eqn.1_Missense_Mutation_p.R123S	NM_025180	NP_079456	Q96MT8	CEP63_HUMAN	centrosomal protein 63 isoform a	123	Potential.				cell division|DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitosis|signal transduction in response to DNA damage|spindle assembly	centrosome|cytosol|spindle pole	protein binding			ovary(1)	1						AGCAAATGAGGGAATTCAGAG	0.308			NA											7	33					0.000157383	0.000178208	0.00308	1	0
EPHB1	2047	broad.mit.edu	37	3	134884855	134884855	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:134884855G>T	uc003eqt.2	+	8	1851	c.1631G>T	c.(1630-1632)GGC>GTC	p.G544V	EPHB1_uc003equ.2_Missense_Mutation_p.G105V	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	544	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CTGATTGCTGGCTCGGCAGCG	0.552			NA											21	147					4.26978e-12	6.47914e-12	0.00333	1	0
ATR	545	broad.mit.edu	37	3	142188288	142188288	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:142188288C>T	uc003eux.3	-	38	6565	c.6443G>A	c.(6442-6444)CGA>CAA	p.R2148Q	ATR_uc003euy.1_Missense_Mutation_p.R34Q	NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	2148	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						ATGACAAATTCGAGAGATCAA	0.343			NA						Other_conserved_DNA_damage_response_genes					7	114					0	0	0.001984	0	0
CPB1	1360	broad.mit.edu	37	3	148545844	148545844	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:148545844G>C	uc003ewl.2	+	2	150	c.127G>C	c.(127-129)GAG>CAG	p.E43Q		NM_001871	NP_001862	P15086	CBPB1_HUMAN	pancreatic carboxypeptidase B1 preproprotein	43					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			CATAATCCGCGAGTTGGCCAG	0.363			NA											6	54					0	0	0.001168	0	0
MED12L	116931	broad.mit.edu	37	3	150840592	150840592	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:150840592T>C	uc003eyp.2	+	3	265	c.227T>C	c.(226-228)ATA>ACA	p.I76T	MED12L_uc011bnz.1_Missense_Mutation_p.I76T|MED12L_uc003eym.1_Missense_Mutation_p.I76T|MED12L_uc003eyn.2_Missense_Mutation_p.I76T|MED12L_uc003eyo.2_Missense_Mutation_p.I76T	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	76					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTTAGCAGCATATTAGCTGAG	0.358			NA											4	18					0	0	0.009096	0	0
MED12L	116931	broad.mit.edu	37	3	151105804	151105804	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:151105804G>T	uc003eyp.2	+	35	5228	c.5190G>T	c.(5188-5190)CTG>CTT	p.L1730L	MED12L_uc011bnz.1_Silent_p.L1590L|MED12L_uc003eyy.1_Silent_p.L893L	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	1730					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CACTGCCCCTGCCTCCTGAGG	0.552			NA											10	19					9.70103e-10	1.3817e-09	0.008291	1	0
SGEF	26084	broad.mit.edu	37	3	153840368	153840368	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:153840368A>T	uc011bog.1	+	2	798	c.587A>T	c.(586-588)AAG>ATG	p.K196M	uc003ezu.1_5'Flank|SGEF_uc011boh.1_Missense_Mutation_p.K196M	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	196					regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			CGGAAGGCAAAGGACCCCGAA	0.612			NA											10	44					0	0	0.010729	0	0
GMPS	8833	broad.mit.edu	37	3	155628515	155628515	+	Silent	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:155628515A>C	uc003faq.2	+	6	896	c.561A>C	c.(559-561)GCA>GCC	p.A187A	GMPS_uc011bom.1_Silent_p.A88A	NM_003875	NP_003866	P49915	GUAA_HUMAN	guanine monophosphate synthetase	187	Glutamine amidotransferase type-1.				glutamine metabolic process|purine base biosynthetic process	cytosol	ATP binding|GMP synthase (glutamine-hydrolyzing) activity|GMP synthase activity			ovary(2)|lung(1)	3			Lung(72;0.11)|LUSC - Lung squamous cell carcinoma(72;0.114)		L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	TATATGGAGCACAGTTCCACC	0.353	Ovarian(153;896 1876 4149 15499 28134)		NA	T	MLL	AML								10	59					0	0	0.008291	0	0
PPM1L	151742	broad.mit.edu	37	3	160783209	160783209	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:160783209C>A	uc003fdr.2	+	3	694	c.593C>A	c.(592-594)GCT>GAT	p.A198D	PPM1L_uc003fds.2_Missense_Mutation_p.A19D|PPM1L_uc003fdt.2_Missense_Mutation_p.A71D|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	198	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			TGTTTGATTGCTCTGCTATCA	0.493	Pancreas(86;250 1994 13715 43211)		NA											21	137					2.89027e-11	4.29223e-11	0.002299	1	0
SI	6476	broad.mit.edu	37	3	164710115	164710115	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:164710115G>T	uc003fei.2	-	42	4974	c.4912C>A	c.(4912-4914)CCA>ACA	p.P1638T		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1638	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TCCAGTACTGGGGTAACCATA	0.328			NA								HNSCC(35;0.089)			16	54					3.35478e-16	5.52427e-16	0.003163	1	0
SI	6476	broad.mit.edu	37	3	164786924	164786924	+	Missense_Mutation	SNP	C	C	A	rs138564183		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:164786924C>A	uc003fei.2	-	4	377	c.315G>T	c.(313-315)TGG>TGT	p.W105C		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	105	Lumenal.|P-type 1.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	CGAAGAAGCACCAAGGAATAA	0.343			NA								HNSCC(35;0.089)			15	34					1.3612e-06	1.72463e-06	0.003163	1	0
LRRIQ4	344657	broad.mit.edu	37	3	169539777	169539777	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:169539777T>A	uc003fgb.2	+	1	68	c.68T>A	c.(67-69)GTC>GAC	p.V23D		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	23	LRR 1.										0						CCACAGCACGTCAATGATAGA	0.343			NA											6	75					0	0	0.001168	0	0
PRKCI	5584	broad.mit.edu	37	3	170002369	170002369	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:170002369C>A	uc003fgs.2	+	12	1426	c.1188C>A	c.(1186-1188)GAC>GAA	p.D396E		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	396	Protein kinase.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AACTCACTGACTACGGCATGT	0.343			NA											14	58					4.36969e-10	6.28369e-10	0.001855	1	0
PCYT1A	5130	broad.mit.edu	37	3	195968943	195968943	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:195968943T>C	uc003fwg.2	-	8	757	c.584A>G	c.(583-585)CAG>CGG	p.Q195R	PCYT1A_uc003fwh.2_Missense_Mutation_p.Q195R	NM_005017	NP_005008	P49585	PCY1A_HUMAN	choline phosphate cytidylyltransferase 1 alpha	195	Catalytic (Potential).					cytosol|soluble fraction	choline-phosphate cytidylyltransferase activity				0	all_cancers(143;1.19e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.28e-24)|all cancers(36;1.01e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00259)	Choline(DB00122)	TTCTGTCCTCTGTGTTGGAGC	0.473			NA											30	72					0	0	0.008361	0	0
WDR53	348793	broad.mit.edu	37	3	196288274	196288274	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr3:196288274C>A	uc003fwt.2	-	3	544	c.73G>T	c.(73-75)GCT>TCT	p.A25S		NM_182627	NP_872433	Q7Z5U6	WDR53_HUMAN	WD repeat domain 53	25	WD 1.									breast(1)|skin(1)	2	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.6e-23)|all cancers(36;1.54e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.29e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		GCTCCAGAAGCCAGCAGCCCT	0.552			NA											16	17					0.000566183	0.00062616	0.00499	1	0
KIAA0232	9778	broad.mit.edu	37	4	6878407	6878407	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:6878407G>A	uc003gjr.3	+	9	4394	c.3931G>A	c.(3931-3933)GGA>AGA	p.G1311R	KIAA0232_uc003gjq.3_Missense_Mutation_p.G1311R	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	1311							ATP binding			ovary(2)	2						AAATGCCAAGGGAGAGAGTGG	0.403			NA											6	54					0	0	0.001168	0	0
GRPEL1	80273	broad.mit.edu	37	4	7062639	7062639	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:7062639G>T	uc003gjy.1	-	4	645	c.604C>A	c.(604-606)CAT>AAT	p.H202N	GRPEL1_uc003gjz.1_3'UTR	NM_025196	NP_079472	Q9HAV7	GRPE1_HUMAN	GrpE-like 1, mitochondrial precursor	202					protein folding|protein import into mitochondrial matrix	mitochondrial matrix	adenyl-nucleotide exchange factor activity|chaperone binding|protein homodimerization activity|unfolded protein binding				0						GTGCGCCCATGCAGCTTGTAC	0.542			NA											46	139					4.64027e-19	7.87713e-19	0.00361	1	0
FBXL5	26234	broad.mit.edu	37	4	15646167	15646167	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:15646167A>T	uc003goc.1	-	2	352	c.249T>A	c.(247-249)AAT>AAA	p.N83K	FBXL5_uc010idw.1_Missense_Mutation_p.N28K|FBXL5_uc003gob.1_5'UTR|FBXL5_uc010idx.1_Missense_Mutation_p.N83K|FBXL5_uc003god.1_Missense_Mutation_p.N66K|FBXL5_uc010idy.1_Missense_Mutation_p.N83K	NM_012161	NP_036293	Q9UKA1	FBXL5_HUMAN	F-box and leucine-rich repeat protein 5 isoform	83	Hemerythrin-like.				iron ion homeostasis|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	perinuclear region of cytoplasm|SCF ubiquitin ligase complex	iron ion binding|protein binding|ubiquitin-protein ligase activity				0						CGGAGAGTTTATTGTCAGAAT	0.363			NA											3	64					0	0	0.000602	0	0
CD38	952	broad.mit.edu	37	4	15818249	15818249	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:15818249G>A	uc011bxc.1	+	2	456	c.349G>A	c.(349-351)GTA>ATA	p.V117I	CD38_uc003goj.1_Missense_Mutation_p.V117I|CD38_uc003gol.1_Missense_Mutation_p.V117I	NM_001775	NP_001766	P28907	CD38_HUMAN	CD38 antigen	117	Extracellular (Potential).				B cell receptor signaling pathway|induction of apoptosis by extracellular signals|negative regulation of apoptosis|negative regulation of transcription, DNA-dependent|positive regulation of B cell proliferation|positive regulation of transcription, DNA-dependent|response to drug	integral to membrane|plasma membrane	binding|NAD+ nucleosidase activity|receptor activity			ovary(2)	2						AACTCAGACCGTACCTTGCAA	0.378			NA											5	100					0	0	0.000602	0	0
LGI2	55203	broad.mit.edu	37	4	25005757	25005757	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:25005757T>C	uc003grf.2	-	8	1053	c.954A>G	c.(952-954)ATA>ATG	p.I318M		NM_018176	NP_060646	Q8N0V4	LGI2_HUMAN	leucine-rich repeat LGI family, member 2	318	EAR 3.					extracellular region					0		Breast(46;0.173)				GAGAGACCTCTATGTCTTGGA	0.483			NA											13	124					0	0	0.001368	0	0
PGM2	55276	broad.mit.edu	37	4	37848688	37848688	+	Nonsense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:37848688A>T	uc011byb.1	+	9	1217	c.1144A>T	c.(1144-1146)AAA>TAA	p.K382*	PGM2_uc011bya.1_Nonsense_Mutation_p.K243*|PGM2_uc011byc.1_Nonsense_Mutation_p.K222*	NM_018290	NP_060760	Q96G03	PGM2_HUMAN	phosphoglucomutase 2	382					glucose 1-phosphate metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	magnesium ion binding|phosphoglucomutase activity|phosphopentomutase activity			ovary(1)	1						CGTCTCCTCCAAAATCTTGCG	0.478			NA											12	165					0	0	0.010729	0	0
FRYL	285527	broad.mit.edu	37	4	48592824	48592824	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:48592824G>T	uc003gyh.1	-	17	1964	c.1359C>A	c.(1357-1359)GTC>GTA	p.V453V	FRYL_uc003gyk.2_Silent_p.V453V	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	453					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						TTACAAGGAAGACTCTGAGAC	0.368			NA											5	97					2.0095e-06	2.53066e-06	0.001984	1	0
CWH43	80157	broad.mit.edu	37	4	49032935	49032935	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:49032935T>C	uc003gyv.2	+	11	1648	c.1466T>C	c.(1465-1467)TTC>TCC	p.F489S	CWH43_uc011bzl.1_Missense_Mutation_p.F462S	NM_025087	NP_079363	Q9H720	PG2IP_HUMAN	cell wall biogenesis 43 C-terminal homolog	489					GPI anchor biosynthetic process	integral to membrane				skin(2)|ovary(1)	3						AAGTTGGGTTTCTATACAGAC	0.443			NA											32	187					0	0	0.010818	0	0
LRRC66	339977	broad.mit.edu	37	4	52861976	52861976	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:52861976C>G	uc003gzi.2	-	4	1225	c.1212G>C	c.(1210-1212)CTG>CTC	p.L404L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	404						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						TTTTTTGCCACAGTCTGTCAA	0.562			NA											20	61					0	0	0.002299	0	0
UGT2B10	7365	broad.mit.edu	37	4	69692215	69692215	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:69692215G>T	uc003hee.2	+	4	1112	c.1087G>T	c.(1087-1089)GGT>TGT	p.G363C	UGT2B10_uc011cam.1_Missense_Mutation_p.G279C	NM_001075	NP_001066	P36537	UDB10_HUMAN	UDP glucuronosyltransferase 2B10 isoform 1	363					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						TGACCTTCTAGGTAACACTCT	0.368	Melanoma(133;755 1763 25578 26334 46021)		NA											31	74					2.80507e-11	4.1776e-11	0.012213	1	0
MUC7	4589	broad.mit.edu	37	4	71347134	71347134	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:71347134C>A	uc011cat.1	+	4	961	c.673C>A	c.(673-675)CCA>ACA	p.P225T	MUC7_uc011cau.1_Missense_Mutation_p.P225T|MUC7_uc003hfj.2_Missense_Mutation_p.P225T|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	225	3.|Thr-rich.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			TACACCAGCTCCACCATCTTC	0.587			NA											10	161					5.50884e-06	6.74235e-06	0.001368	1	0
EREG	2069	broad.mit.edu	37	4	75250497	75250497	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:75250497C>T	uc003hie.1	+	5	648	c.482C>T	c.(481-483)TCA>TTA	p.S161L		NM_001432	NP_001423	O14944	EREG_HUMAN	epiregulin preproprotein	161	Cytoplasmic (Potential).				angiogenesis|cell-cell signaling|cytokine-mediated signaling pathway|epidermal growth factor receptor signaling pathway|female meiosis|keratinocyte differentiation|keratinocyte proliferation|luteinizing hormone signaling pathway|mRNA transcription|negative regulation of epithelial cell proliferation|negative regulation of smooth muscle cell differentiation|negative regulation of transcription, DNA-dependent|oocyte maturation|organ morphogenesis|ovarian cumulus expansion|ovulation|positive regulation of cell division|positive regulation of cytokine production|positive regulation of DNA replication|positive regulation of epidermal growth factor receptor activity|positive regulation of fibroblast proliferation|positive regulation of innate immune response|positive regulation of interleukin-6 biosynthetic process|positive regulation of mitosis|positive regulation of phosphorylation|positive regulation of smooth muscle cell proliferation|primary follicle stage|wound healing	extracellular space|integral to plasma membrane	epidermal growth factor receptor binding|growth factor activity			breast(1)|skin(1)	2			Lung(101;0.196)			AGAGTTACCTCAGGGGATCCA	0.388			NA											6	39					0	0	0.001984	0	0
NUP54	53371	broad.mit.edu	37	4	77065569	77065569	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:77065569G>C	uc003hjs.2	-	2	253	c.125C>G	c.(124-126)TCT>TGT	p.S42C	NUP54_uc010ije.2_5'UTR|NUP54_uc011cbs.1_5'UTR|NUP54_uc011cbt.1_Missense_Mutation_p.S42C|NUP54_uc003hjt.2_5'UTR	NM_017426	NP_059122	Q7Z3B4	NUP54_HUMAN	nucleoporin 54kDa	42	Gly-rich.|Thr-rich.|9 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleoplasm				ovary(1)|lung(1)	2						AGTTGGGGCAGAAAAGCTGAA	0.358			NA											7	51					0	0	0.00308	0	0
SEC31A	22872	broad.mit.edu	37	4	83795890	83795890	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:83795890G>T	uc003hnf.2	-	6	677	c.513C>A	c.(511-513)ATC>ATA	p.I171I	SEC31A_uc003hne.2_5'Flank|SEC31A_uc011ccl.1_Silent_p.I171I|SEC31A_uc003hnl.2_Silent_p.I171I|SEC31A_uc003hng.2_Silent_p.I171I|SEC31A_uc003hnh.2_Silent_p.I171I|SEC31A_uc003hni.2_Silent_p.I171I|SEC31A_uc003hnj.2_Silent_p.I171I|SEC31A_uc011ccm.1_Silent_p.I166I|SEC31A_uc011ccn.1_Silent_p.I171I|SEC31A_uc003hnk.2_Silent_p.I171I|SEC31A_uc003hnm.2_Silent_p.I171I|SEC31A_uc003hnn.1_Silent_p.I171I|SEC31A_uc003hno.2_Silent_p.I171I	NM_001077207	NP_001070675	O94979	SC31A_HUMAN	SEC31 homolog A isoform 1	171	WD 3.|Interaction with SEC13.				COPII vesicle coating|post-translational protein modification|protein N-linked glycosylation via asparagine|protein transport|response to calcium ion	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|perinuclear region of cytoplasm	calcium-dependent protein binding		SEC31A/JAK2(4)|SEC31A/ALK(3)	haematopoietic_and_lymphoid_tissue(4)|soft_tissue(3)|breast(1)	8		Hepatocellular(203;0.114)				CAATGCAGCTGATATCTTCTG	0.383			NA											6	108					0.000157383	0.000178208	0.00308	1	0
WDFY3	23001	broad.mit.edu	37	4	85771119	85771119	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:85771119G>A	uc003hpd.2	-	5	648	c.240C>T	c.(238-240)TTC>TTT	p.F80F	WDFY3_uc003hpf.2_Silent_p.F80F	NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	80						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		CTTGTGTTGTGAACTGCAGAA	0.368			NA											11	125					0	0	0.010729	0	0
MMRN1	22915	broad.mit.edu	37	4	90857896	90857896	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:90857896C>A	uc003hst.2	+	6	3136	c.3065C>A	c.(3064-3066)ACC>AAC	p.T1022N	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.T764N	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1022					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		GTAAATCTTACCACAGTCCTG	0.373			NA											7	61					1.12685e-05	1.36319e-05	0.004482	1	0
SMARCAD1	56916	broad.mit.edu	37	4	95195932	95195932	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:95195932G>T	uc003htc.3	+	13	1971	c.1716G>T	c.(1714-1716)AAG>AAT	p.K572N	SMARCAD1_uc003htb.3_Missense_Mutation_p.K572N|SMARCAD1_uc003htd.3_Missense_Mutation_p.K572N|SMARCAD1_uc010ila.2_Missense_Mutation_p.K435N|SMARCAD1_uc011cdw.1_Missense_Mutation_p.K142N	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	572	Helicase ATP-binding.				chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		CTACTTTGAAGGTCCTCTGTT	0.323			NA											31	76					2.85442e-18	4.81423e-18	0.010818	1	0
UNC5C	8633	broad.mit.edu	37	4	96140288	96140288	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:96140288C>T	uc003htp.1	-	9	1631	c.1477G>A	c.(1477-1479)GAC>AAC	p.D493N	UNC5C_uc010ilc.1_Missense_Mutation_p.D512N|UNC5C_uc003htq.2_Missense_Mutation_p.D512N	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	493	Cytoplasmic (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TCAGAGAGGTCATCTTGGGGG	0.507			NA											27	165					0	0	0.004656	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99300218	99300218	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:99300218G>A	uc003htx.3	+	5	602	c.412G>A	c.(412-414)GAC>AAC	p.D138N	RAP1GDS1_uc003htu.2_Missense_Mutation_p.D138N|RAP1GDS1_uc003htw.3_Missense_Mutation_p.D139N|RAP1GDS1_uc003htv.3_Missense_Mutation_p.D139N|RAP1GDS1_uc003htz.3_Intron|RAP1GDS1_uc003hty.3_Intron|RAP1GDS1_uc003hua.3_Intron	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	138							binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		GATTGTAATTGACCATTTAAG	0.383			NA	T	NUP98	T-ALL								33	107					0	0	0.012213	0	0
RAP1GDS1	5910	broad.mit.edu	37	4	99341260	99341260	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:99341260T>G	uc003htx.3	+	11	1455	c.1265T>G	c.(1264-1266)CTT>CGT	p.L422R	RAP1GDS1_uc003htw.3_Missense_Mutation_p.L423R|RAP1GDS1_uc003htv.3_Missense_Mutation_p.L423R|RAP1GDS1_uc003htz.3_Missense_Mutation_p.L373R|RAP1GDS1_uc003hty.3_Missense_Mutation_p.L374R|RAP1GDS1_uc003hua.3_Missense_Mutation_p.L331R	NM_001100427	NP_001093897	P52306	GDS1_HUMAN	RAP1, GTP-GDP dissociation stimulator 1 isoform	422	ARM 4.						binding|GTPase activator activity			ovary(1)|lung(1)|breast(1)	3				OV - Ovarian serous cystadenocarcinoma(123;2.9e-07)|LUSC - Lung squamous cell carcinoma(1;0.0253)|Lung(1;0.0576)		CAGTTCAAACTTCTGGGAACA	0.343			NA	T	NUP98	T-ALL								12	61					0	0	0.010729	0	0
ADH1A	124	broad.mit.edu	37	4	100208120	100208120	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:100208120G>T	uc003hur.1	-	3	217	c.146C>A	c.(145-147)ACA>AAA	p.T49K	uc003hum.1_RNA|ADH1A_uc011ceg.1_Missense_Mutation_p.T49K|ADH1A_uc010ilf.1_5'Flank|ADH1A_uc010ilg.1_Missense_Mutation_p.T49K	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	49					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	GTGGTCATCTGTGCCACAGAT	0.473			NA											39	104					3.38236e-24	5.89513e-24	0.006999	1	0
MANBA	4126	broad.mit.edu	37	4	103557061	103557061	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:103557061A>G	uc003hwg.2	-	15	2218	c.2118T>C	c.(2116-2118)GGT>GGC	p.G706G	MANBA_uc011ces.1_Silent_p.G649G	NM_005908	NP_005899	O00462	MANBA_HUMAN	mannosidase, beta A, lysosomal precursor	706					carbohydrate metabolic process|protein modification process	lysosome	beta-mannosidase activity|cation binding			ovary(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;4.44e-08)		GATCTGACACACCATAGATAT	0.378			NA											9	49					0	0	0.006214	0	0
BBS12	166379	broad.mit.edu	37	4	123664621	123664621	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:123664621G>A	uc003ieu.2	+	2	1767	c.1574G>A	c.(1573-1575)CGT>CAT	p.R525H		NM_152618	NP_689831	Q6ZW61	BBS12_HUMAN	Bardet-Biedl syndrome 12	525					cellular protein metabolic process	cilium	ATP binding			ovary(2)	2						TGTGCCTATCGTTTGTATTAT	0.403			NA							Bardet-Biedl_syndrome				11	99					0	0	0.008291	0	0
PCDH18	54510	broad.mit.edu	37	4	138451465	138451465	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:138451465C>A	uc003ihe.3	-	1	2165	c.1778G>T	c.(1777-1779)GGG>GTG	p.G593V	PCDH18_uc003ihf.3_Missense_Mutation_p.G586V|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.G373V|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	593	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					ACTTTCAGCCCCTTTGGGAAT	0.468			NA											15	194					2.23348e-06	2.80259e-06	0.004007	1	0
TBC1D9	23158	broad.mit.edu	37	4	141543672	141543672	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:141543672T>A	uc010ioj.2	-	21	3750	c.3478A>T	c.(3478-3480)AGC>TGC	p.S1160C		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	1160						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				GACATGGAGCTGTCGTCCTTG	0.627			NA											8	93					0	0	0.00308	0	0
ZNF827	152485	broad.mit.edu	37	4	146813424	146813424	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:146813424G>C	uc003ikn.2	-	3	1285	c.1237C>G	c.(1237-1239)CGC>GGC	p.R413G	ZNF827_uc003ikm.2_Missense_Mutation_p.R413G|ZNF827_uc010iox.2_Missense_Mutation_p.R63G	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	413	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					TTGTCCTTGCGAGCACACCGG	0.507			NA											17	61					0	0	0.012319	0	0
FGB	2244	broad.mit.edu	37	4	155490450	155490450	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:155490450G>T	uc003ioa.3	+	6	988	c.949G>T	c.(949-951)GGC>TGC	p.G317C	FGB_uc003iob.3_Missense_Mutation_p.G314C|FGB_uc010ipv.2_Missense_Mutation_p.G255C|FGB_uc010ipw.2_Intron|FGB_uc003ioc.3_Missense_Mutation_p.G98C	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	317	Fibrinogen C-terminal.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	GAATTACTGTGGCCTACCAGG	0.378	NSCLC(106;1133 1613 21870 46110 52656)		NA											17	57					1.00905e-13	1.57466e-13	0.008871	1	0
TMEM144	55314	broad.mit.edu	37	4	159158747	159158747	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:159158747G>T	uc003ipx.2	+	9	1154	c.634G>T	c.(634-636)GAC>TAC	p.D212Y	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	212						integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		CTACATCAAGGACCACAGCAA	0.328			NA											5	63					1.024e-07	1.36533e-07	0.000602	1	0
NPY5R	4889	broad.mit.edu	37	4	164272464	164272464	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:164272464G>T	uc003iqn.2	+	4	1221	c.1039G>T	c.(1039-1041)GTT>TTT	p.V347F		NM_006174	NP_006165	Q15761	NPY5R_HUMAN	neuropeptide Y receptor Y5	347	Cytoplasmic (Potential).				cardiac left ventricle morphogenesis|outflow tract morphogenesis	integral to plasma membrane				lung(6)|skin(1)	7	all_hematologic(180;0.166)	Prostate(90;0.109)				AAATTCAGATGTTCATGAATT	0.368	Melanoma(139;1287 1774 9781 19750 25599)		NA											24	49					1.22574e-08	1.69493e-08	0.002299	1	0
MARCH1	55016	broad.mit.edu	37	4	164534532	164534532	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:164534532G>T	uc003iqs.1	-	5	1153	c.176C>A	c.(175-177)ACA>AAA	p.T59K	MARCH1_uc003iqr.1_Missense_Mutation_p.T42K	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	59	Responsible for low stability (By similarity).				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGTCCCTGTTGTTGGGCTGCT	0.398			NA											4	73					1.23904e-05	1.48856e-05	0.000602	1	0
TRIM60	166655	broad.mit.edu	37	4	165961467	165961467	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:165961467C>A	uc003iqy.1	+	3	413	c.243C>A	c.(241-243)CTC>CTA	p.L81L	TRIM60_uc010iqx.1_Silent_p.L81L	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	81						intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		CTAAACAACTCCAGATTAGGA	0.438			NA											5	87					0.000602214	0.000659027	0.000602	1	0
TLL1	7092	broad.mit.edu	37	4	166924717	166924717	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:166924717G>T	uc003irh.1	+	6	1454	c.807G>T	c.(805-807)CAG>CAT	p.Q269H	TLL1_uc011cjn.1_Missense_Mutation_p.Q269H|TLL1_uc011cjo.1_Missense_Mutation_p.Q93H	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	269	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AAAACATCCAGCCAGGTGAGA	0.383			NA											7	31					8.12818e-05	9.32508e-05	0.001984	1	0
GALNTL6	442117	broad.mit.edu	37	4	172735864	172735864	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:172735864C>A	uc003isv.2	+	2	869	c.133C>A	c.(133-135)CAG>AAG	p.Q45K		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	45	Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						GCCCGGGGAGCAGCAGGTAAG	0.547			NA											3	24					2.56e-06	3.2046e-06	0.009096	1	0
MORF4	10934	broad.mit.edu	37	4	174537206	174537206	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:174537206C>T	uc011cke.1	-	1	589	c.589G>A	c.(589-591)GCT>ACT	p.A197T		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		AGTAATAAAGCAAGGCTCTTC	0.428			NA											7	110					0	0	0.00308	0	0
WDR17	116966	broad.mit.edu	37	4	177058693	177058693	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:177058693G>T	uc003iuj.2	+	10	1518	c.1362G>T	c.(1360-1362)GGG>GGT	p.G454G	WDR17_uc003iuk.2_Silent_p.G430G|WDR17_uc003ium.3_Silent_p.G430G|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	454	WD 7.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		GTATTGCTGGGGGAACTTCCC	0.289			NA											9	40					2.17888e-05	2.60269e-05	0.006214	1	0
ENPP6	133121	broad.mit.edu	37	4	185038113	185038113	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:185038113T>C	uc003iwc.2	-	5	893	c.751A>G	c.(751-753)AAA>GAA	p.K251E		NM_153343	NP_699174	Q6UWR7	ENPP6_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	251	Extracellular (Potential).				lipid catabolic process	extracellular region|integral to membrane|plasma membrane				central_nervous_system(1)	1		all_lung(41;7.99e-12)|Lung NSC(41;1.46e-11)|Colorectal(36;0.00435)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;4.98e-27)|Epithelial(43;3.15e-24)|OV - Ovarian serous cystadenocarcinoma(60;4.09e-12)|Colorectal(24;3.78e-05)|STAD - Stomach adenocarcinoma(60;4.5e-05)|COAD - Colon adenocarcinoma(29;0.000154)|GBM - Glioblastoma multiforme(59;0.000167)|BRCA - Breast invasive adenocarcinoma(30;0.000378)|LUSC - Lung squamous cell carcinoma(40;0.0151)		TCAATCACTTTGTCCATCCAG	0.542			NA											13	42					0	0	0.001368	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190905503	190905504	+	Missense_Mutation	DNP	GG	GG	TT	rs61746584		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:190905503_190905504GG>TT	uc011clg.1	-	3	183_184	c.180_181CC>AA	c.(178-183)TCCCGC>TCAAGC	p.R61S		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	62					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		AGCACAGCGCGGGACACGTACC	0.698			NA											20	45					0	0	0.004672	0	0
SLC6A19	340024	broad.mit.edu	37	5	1212464	1212464	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:1212464G>A	uc003jbw.3	+	4	584	c.528G>A	c.(526-528)TGG>TGA	p.W176*		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	176	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			ACTACTTCTGGTACCGAGAGA	0.622			NA											18	96					0	0	0.008871	0	0
ADCY2	108	broad.mit.edu	37	5	7520894	7520894	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:7520894T>A	uc003jdz.1	+	3	519	c.452T>A	c.(451-453)CTG>CAG	p.L151Q		NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	151	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TACACCATGCTGCCCTTCAAC	0.522			NA											27	88					0	0	0.005443	0	0
SEMA5A	9037	broad.mit.edu	37	5	9108268	9108268	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:9108268C>A	uc003jek.2	-	16	2769	c.2057G>T	c.(2056-2058)TGT>TTT	p.C686F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	686	TSP type-1 3.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GCAGCCTGCACAGTCAGGCCC	0.547			NA											10	25					0.000442599	0.000490004	0.006214	1	0
CMBL	134147	broad.mit.edu	37	5	10288614	10288614	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:10288614C>T	uc003jes.2	-	3	694	c.243G>A	c.(241-243)GGG>GGA	p.G81G		NM_138809	NP_620164	Q96DG6	CMBL_HUMAN	carboxymethylenebutenolidase	81						cytosol	hydrolase activity|protein binding			skin(1)	1						AAGGCTCTTGCCCTACAAAGA	0.438			NA											29	58					0	0	0.009535	0	0
DNAH5	1767	broad.mit.edu	37	5	13841843	13841843	+	Silent	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:13841843T>G	uc003jfd.2	-	33	5484	c.5442A>C	c.(5440-5442)ACA>ACC	p.T1814T		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1814	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTTGGAAACCTGTTTCTTGAA	0.343			NA							Kartagener_syndrome				29	50					0	0	0.00632	0	0
CDH18	1016	broad.mit.edu	37	5	19473682	19473682	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:19473682A>T	uc003jgc.2	-	12	2403	c.2026T>A	c.(2026-2028)TTG>ATG	p.L676M	CDH18_uc003jgd.2_Missense_Mutation_p.L676M|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	676	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					GGATTCCTCAAGGCTGTGATG	0.522			NA											17	178					0	0	0.004007	0	0
CDH12	1010	broad.mit.edu	37	5	21783481	21783481	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:21783481A>G	uc010iuc.2	-	8	1837	c.1379T>C	c.(1378-1380)ATT>ACT	p.I460T	CDH12_uc011cno.1_Missense_Mutation_p.I420T|CDH12_uc003jgk.2_Missense_Mutation_p.I460T	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	460	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TTTACTCGCAATTATGGAGAA	0.383			NA								HNSCC(59;0.17)			27	127					0	0	0.005443	0	0
CDH10	1008	broad.mit.edu	37	5	24491727	24491727	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:24491727C>A	uc003jgr.1	-	11	2166	c.1834G>T	c.(1834-1836)GGG>TGG	p.G612W	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	612	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATCAAGGCCCCAGTGCTGAGG	0.507			NA								HNSCC(23;0.051)			20	89					2.27731e-05	2.71715e-05	0.012319	1	0
CDH10	1008	broad.mit.edu	37	5	24498610	24498610	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:24498610G>T	uc003jgr.1	-	9	1744	c.1412C>A	c.(1411-1413)ACA>AAA	p.T471K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	471	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AGCCACGCGTGTTGTCTCTTT	0.383			NA								HNSCC(23;0.051)			19	94					3.73194e-20	6.39761e-20	0.010504	1	0
CDH9	1007	broad.mit.edu	37	5	26881634	26881634	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:26881634C>A	uc003jgs.1	-	12	2150	c.1981G>T	c.(1981-1983)GAT>TAT	p.D661Y	CDH9_uc011cnv.1_Missense_Mutation_p.D254Y	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	661	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						CCGCCTTCATCGTTGTAGGTC	0.438	Melanoma(8;187 585 15745 40864 52829)		NA											56	258					4.17328e-34	7.52488e-34	0.00361	1	0
CDH9	1007	broad.mit.edu	37	5	26885733	26885733	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:26885733G>T	uc003jgs.1	-	11	2041	c.1872C>A	c.(1870-1872)CTC>CTA	p.L624L	CDH9_uc011cnv.1_Silent_p.L217L	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	624	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TAAGCAGTATGAGGACACAGA	0.483	Melanoma(8;187 585 15745 40864 52829)		NA											28	39					5.61819e-17	9.31014e-17	0.005443	1	0
CDH6	1004	broad.mit.edu	37	5	31317988	31317988	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:31317988G>T	uc003jhe.1	+	11	2165	c.1839G>T	c.(1837-1839)ACG>ACT	p.T613T	CDH6_uc003jhd.1_Silent_p.T613T	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein	613	Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						GACTGAGCACGGGGGCTCTGG	0.592			NA											22	89					1.95232e-30	3.47227e-30	0.00278	1	0
SLC45A2	51151	broad.mit.edu	37	5	33947283	33947283	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:33947283G>A	uc003jid.2	-	6	1445	c.1353C>T	c.(1351-1353)CGC>CGT	p.R451R	SLC45A2_uc003jie.2_Silent_p.R451R	NM_016180	NP_057264	Q9UMX9	S45A2_HUMAN	membrane-associated transporter protein isoform	451	Cytoplasmic (Potential).				melanin biosynthetic process|response to stimulus|transmembrane transport|visual perception	integral to membrane|melanosome membrane				ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TTTCTTCCTCGCGGTGGTACT	0.517	Ovarian(31;380 859 8490 22203 49048)		NA											86	256					0	0	0.00361	0	0
SLC1A3	6507	broad.mit.edu	37	5	36677263	36677263	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:36677263G>T	uc003jkj.3	+	6	1313	c.837G>T	c.(835-837)ATG>ATT	p.M279I	SLC1A3_uc011cox.1_Missense_Mutation_p.M172I|SLC1A3_uc010iuy.2_Missense_Mutation_p.M279I	NM_004172	NP_004163	P43003	EAA1_HUMAN	solute carrier family 1 (glial high affinity	279					D-aspartate import|L-glutamate import|neurotransmitter uptake	integral to membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|sodium:dicarboxylate symporter activity				0	all_lung(31;0.000245)		Epithelial(62;0.0444)|Lung(74;0.111)|all cancers(62;0.128)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)		L-Glutamic Acid(DB00142)	AAGCCATCATGAGACTGGTAG	0.403			NA											6	71					3.59834e-05	4.21623e-05	0.001168	1	0
DEPDC1B	55789	broad.mit.edu	37	5	59899255	59899255	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:59899255G>C	uc003jsh.2	-	9	1278	c.1205C>G	c.(1204-1206)TCT>TGT	p.S402C	DEPDC1B_uc011cqm.1_Missense_Mutation_p.S402C|DEPDC1B_uc011cqn.1_Missense_Mutation_p.S375C	NM_018369	NP_060839	Q8WUY9	DEP1B_HUMAN	DEP domain containing 1B isoform 1	402				S -> P (in Ref. 3; BAA92089).	regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)	1		Lung NSC(810;0.000214)|Prostate(74;0.0147)|Breast(144;0.0991)|Ovarian(174;0.17)				CTCCTCTATAGAGGTCTGCAA	0.423			NA											3	86					0	0	0.009096	0	0
SLC30A5	64924	broad.mit.edu	37	5	68396736	68396736	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:68396736C>T	uc003jvh.2	+	2	387	c.186C>T	c.(184-186)TTC>TTT	p.F62F	SLC30A5_uc003jvg.2_Silent_p.F62F|SLC30A5_uc011crc.1_Intron|SLC30A5_uc003jvi.2_5'Flank	NM_022902	NP_075053	Q8TAD4	ZNT5_HUMAN	solute carrier family 30 (zinc transporter),	62	Helical; (Potential).				cellular zinc ion homeostasis|cobalt ion transport|regulation of proton transport|response to zinc ion	apical plasma membrane|Golgi apparatus|integral to plasma membrane|membrane fraction|secretory granule membrane	zinc ion binding|zinc ion transmembrane transporter activity			central_nervous_system(1)	1		Lung NSC(167;0.000986)|Prostate(74;0.00809)|Colorectal(97;0.0508)|Ovarian(174;0.16)		OV - Ovarian serous cystadenocarcinoma(47;1.24e-56)|Epithelial(20;1.12e-52)|all cancers(19;2.63e-48)|Lung(70;0.0177)		TTGTTCAGTTCATTTTTATAT	0.303			NA											4	70					0	0	0.009096	0	0
MAP1B	4131	broad.mit.edu	37	5	71495673	71495673	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:71495673C>A	uc003kbw.3	+	5	6732	c.6491C>A	c.(6490-6492)CCG>CAG	p.P2164Q	MAP1B_uc010iyw.1_Missense_Mutation_p.P2181Q|MAP1B_uc010iyx.1_Missense_Mutation_p.P2038Q|MAP1B_uc010iyy.1_Missense_Mutation_p.P2038Q	NM_005909	NP_005900	P46821	MAP1B_HUMAN	microtubule-associated protein 1B	2164						microtubule|microtubule associated complex	structural molecule activity			large_intestine(2)|ovary(1)|central_nervous_system(1)|pancreas(1)	5		Lung NSC(167;0.00202)|Ovarian(174;0.0175)|Prostate(461;0.142)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;7.99e-54)		GATGTTCCCCCGGAGACTGAA	0.577	Melanoma(17;367 822 11631 31730 47712)		NA											20	51					8.00594e-06	9.78712e-06	0.007413	1	0
HMGCR	3156	broad.mit.edu	37	5	74646642	74646642	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:74646642A>T	uc003kdp.2	+	9	965	c.809A>T	c.(808-810)CAC>CTC	p.H270L	HMGCR_uc011cst.1_Missense_Mutation_p.H290L|HMGCR_uc003kdq.2_Missense_Mutation_p.H270L|HMGCR_uc010izn.1_Missense_Mutation_p.H71L	NM_000859	NP_000850	P04035	HMDH_HUMAN	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	270					cholesterol biosynthetic process|coenzyme A metabolic process|germ cell migration|gonad development|isoprenoid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|peroxisomal membrane	hydroxymethylglutaryl-CoA reductase (NADPH) activity|NADP binding			ovary(1)	1		all_lung(232;0.00101)|Lung NSC(167;0.00278)|Ovarian(174;0.0129)|Prostate(461;0.174)		OV - Ovarian serous cystadenocarcinoma(47;2.24e-54)	Atorvastatin(DB01076)|Bezafibrate(DB01393)|Cerivastatin(DB00439)|Fluvastatin(DB01095)|Lovastatin(DB00227)|NADH(DB00157)|Pravastatin(DB00175)|Rosuvastatin(DB01098)|Simvastatin(DB00641)	GTTCATGCTCACAGTCGCTGG	0.368			NA											24	59					0	0	0.004656	0	0
SPZ1	84654	broad.mit.edu	37	5	79616044	79616044	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:79616044T>A	uc003kgn.2	+	1	255	c.10T>A	c.(10-12)TCT>ACT	p.S4T	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	4					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		GATGGCCAGCTCTGCTAAGTC	0.468			NA											99	217					0	0	0.00361	0	0
ZCCHC9	84240	broad.mit.edu	37	5	80604800	80604800	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:80604800G>C	uc003khj.2	+	4	704	c.571G>C	c.(571-573)GAA>CAA	p.E191Q	RNU5E_uc011cto.1_Intron|ZCCHC9_uc003khk.3_Missense_Mutation_p.E191Q|ZCCHC9_uc003khi.2_Missense_Mutation_p.E191Q	NM_001131035	NP_001124507	Q8N567	ZCHC9_HUMAN	zinc finger, CCHC domain containing 9	191	CCHC-type 3.						nucleic acid binding|zinc ion binding			ovary(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.135)		OV - Ovarian serous cystadenocarcinoma(54;8.18e-45)|Epithelial(54;2.72e-39)|all cancers(79;7.33e-34)		TGTTTGTGGAGAAATGGGGCA	0.368			NA											13	38					0	0	0.001855	0	0
XRCC4	7518	broad.mit.edu	37	5	82554470	82554470	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:82554470G>T	uc003kib.2	+	7	995	c.867G>T	c.(865-867)CAG>CAT	p.Q289H	XRCC4_uc003kia.1_Missense_Mutation_p.Q289H|XRCC4_uc003kid.2_Missense_Mutation_p.Q289H|XRCC4_uc003kic.2_Missense_Mutation_p.Q289H|XRCC4_uc003kie.2_Missense_Mutation_p.Q289H|XRCC4_uc003kif.1_Missense_Mutation_p.Q289H|XRCC4_uc003kig.2_RNA	NM_022406	NP_071801	Q13426	XRCC4_HUMAN	X-ray repair cross complementing protein 4	289					DNA ligation involved in DNA repair|double-strand break repair via nonhomologous end joining|initiation of viral infection|positive regulation of ligase activity|provirus integration|response to X-ray	cytosol|DNA ligase IV complex|DNA-dependent protein kinase-DNA ligase 4 complex|nucleoplasm	DNA binding|protein C-terminus binding			skin(3)	3		Lung NSC(167;0.00132)|all_lung(232;0.00154)|Ovarian(174;0.034)		OV - Ovarian serous cystadenocarcinoma(54;1.44e-38)|Epithelial(54;3.72e-33)|all cancers(79;9.22e-28)		TGGCTCCTCAGGAGAATCAGC	0.348			NA						NHEJ					23	47					2.89027e-11	4.29223e-11	0.002299	1	0
EDIL3	10085	broad.mit.edu	37	5	83402632	83402632	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:83402632C>A	uc003kio.1	-	6	905	c.486G>T	c.(484-486)CTG>CTT	p.L162L	EDIL3_uc003kip.1_Silent_p.L152L	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	162	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		CTTCAATTCCCAGTGGGCCTG	0.383			NA											48	110					2.81731e-22	4.8616e-22	0.00361	1	0
CXXC5	51523	broad.mit.edu	37	5	139060297	139060297	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:139060297T>C	uc010jfg.1	+	2	479	c.189T>C	c.(187-189)GGT>GGC	p.G63G	CXXC5_uc003let.2_Silent_p.G63G	NM_016463	NP_057547	Q7LFL8	CXXC5_HUMAN	CXXC finger 5	63					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|nucleus	DNA binding|signal transducer activity|zinc ion binding			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAAGAGCGGTATCATCAGTG	0.627			NA											10	44					0	0	0.010729	0	0
PCDHA10	56139	broad.mit.edu	37	5	140237074	140237074	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140237074G>T	uc003lhx.2	+	1	1441	c.1441G>T	c.(1441-1443)GCG>TCG	p.A481S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.A481S|PCDHA10_uc011dad.1_Missense_Mutation_p.A481S	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	481	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCGTGGGACGCGGACGCGCA	0.662			NA											38	64					6.97489e-18	1.1707e-17	0.004878	1	0
PCDHA11	56138	broad.mit.edu	37	5	140250183	140250183	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140250183G>T	uc003lia.2	+	1	2353	c.1495G>T	c.(1495-1497)GGC>TGC	p.G499C	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.G499C	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	499	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGGCGGTTGGGCGACCGCGC	0.672			NA											37	83					1.30998e-17	2.1917e-17	0.005524	1	0
PCDHA12	56137	broad.mit.edu	37	5	140256515	140256515	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140256515G>C	uc003lic.2	+	1	1585	c.1458G>C	c.(1456-1458)AAG>AAC	p.K486N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.K486N	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	486	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGCGCAGAAGAACGCGCTGG	0.667	Pancreas(113;759 1672 13322 24104 50104)		NA											4	78					0	0	0.004482	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574115	140574115	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140574115G>A	uc003lix.2	+	1	2164	c.1990G>A	c.(1990-1992)GAC>AAC	p.D664N		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	664	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCTCCTGGTGGACGGCTTCTC	0.701			NA											28	31					0	0	0.005443	0	0
PCDHB10	56126	broad.mit.edu	37	5	140574131	140574131	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140574131C>T	uc003lix.2	+	1	2180	c.2006C>T	c.(2005-2007)CCC>CTC	p.P669L		NM_018930	NP_061753	Q9UN67	PCDBA_HUMAN	protocadherin beta 10 precursor	669	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTCCCAGCCCTACCTGCCT	0.692			NA											33	40					0	0	0.012213	0	0
PCDHB11	56125	broad.mit.edu	37	5	140579376	140579376	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140579376A>T	uc003liy.2	+	1	29	c.29A>T	c.(28-30)CAG>CTG	p.Q10L	PCDHB11_uc011daj.1_5'UTR	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	10					calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGCACTCAGCAGATAAGGCAA	0.507			NA											21	60					0	0	0.008871	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750198	140750198	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:140750198C>A	uc003ljw.1	+	1	237	c.237C>A	c.(235-237)CCC>CCA	p.P79P	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Silent_p.P79P	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	79	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCGTGAGCCCCGAAAATGGGA	0.498			NA											81	190					1.3466e-33	2.42388e-33	0.00361	1	0
FBXO38	81545	broad.mit.edu	37	5	147807061	147807061	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:147807061G>T	uc003lpf.1	+	15	2324	c.2204G>T	c.(2203-2205)GGC>GTC	p.G735V	FBXO38_uc003lpg.1_Missense_Mutation_p.G735V|FBXO38_uc003lph.2_Intron	NM_205836	NP_995308	Q6PIJ6	FBX38_HUMAN	F-box protein 38 isoform b	735						cytoplasm|nucleus				ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACAGCGGCGGCTCTTCCGAG	0.612			NA											14	26					0.000308642	0.00034279	0.003163	1	0
AFAP1L1	134265	broad.mit.edu	37	5	148709278	148709278	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:148709278G>T	uc003lqh.2	+	16	1991	c.1860G>T	c.(1858-1860)CGG>CGT	p.R620R	AFAP1L1_uc010jgy.2_Silent_p.R620R|AFAP1L1_uc003lqi.1_Silent_p.R235R	NM_152406	NP_689619	Q8TED9	AF1L1_HUMAN	actin filament associated protein 1-like 1	620	Potential.						protein binding			breast(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGATGCCCGGAGGTACTTGG	0.473			NA											9	36					1.76689e-08	2.40187e-08	0.006214	1	0
GABRG2	2566	broad.mit.edu	37	5	161530945	161530945	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:161530945G>T	uc003lyz.3	+	6	1040	c.682G>T	c.(682-684)GAA>TAA	p.E228*	GABRG2_uc010jjc.2_Nonsense_Mutation_p.E268*|GABRG2_uc003lyy.3_Nonsense_Mutation_p.E228*|GABRG2_uc011dej.1_Nonsense_Mutation_p.E133*	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	228	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		AAGTTCTGTTGAAGTGGGCGA	0.398			NA											13	41					5.50884e-06	6.74235e-06	0.001368	1	0
DOCK2	1794	broad.mit.edu	37	5	169111246	169111246	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:169111246C>A	uc003maf.2	+	8	733	c.653C>A	c.(652-654)TCC>TAC	p.S218Y	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	218					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCTCCTCATCCCCCACCCAT	0.468			NA											50	102					3.19069e-20	5.47874e-20	0.00361	1	0
DOCK2	1794	broad.mit.edu	37	5	169116294	169116294	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:169116294C>G	uc003maf.2	+	9	880	c.800C>G	c.(799-801)CCT>CGT	p.P267R	DOCK2_uc011der.1_RNA	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	267					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CGGGGCTTCCCTAAGGAGATT	0.502			NA											12	39					0	0	0.001368	0	0
STK10	6793	broad.mit.edu	37	5	171488231	171488231	+	Silent	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:171488231C>G	uc003mbo.1	-	14	2424	c.2124G>C	c.(2122-2124)CTG>CTC	p.L708L		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	708	Potential.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCTTCATGGCCAGCTCCAGGT	0.607			NA											40	104					0	0	0.011902	0	0
DRD1	1812	broad.mit.edu	37	5	174870079	174870079	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:174870079G>T	uc003mcz.2	-	2	969	c.24C>A	c.(22-24)GCC>GCA	p.A8A		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	8	Extracellular (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	TCCCGTCCATGGCAGAGGTGT	0.557			NA											31	67					3.67414e-24	6.39301e-24	0.012213	1	0
ZNF354B	117608	broad.mit.edu	37	5	178293996	178293996	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:178293996A>T	uc003mjl.2	+	4	406	c.180A>T	c.(178-180)CCA>CCT	p.P60P	ZNF354B_uc003mjm.2_Silent_p.P60P	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	60	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTACCAAACCAAAAGTCATCT	0.463			NA											9	102					0	0	0.006214	0	0
MAML1	9794	broad.mit.edu	37	5	179201511	179201511	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:179201511C>T	uc003mkm.2	+	5	2947	c.2684C>T	c.(2683-2685)TCA>TTA	p.S895L	MAML1_uc003mkn.1_Intron	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	895					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCATGAGCTCAGCAGCTGCC	0.647			NA											4	39					0	0	0.009096	0	0
FLT4	2324	broad.mit.edu	37	5	180056964	180056964	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:180056964G>T	uc003mma.3	-	5	734	c.655C>A	c.(655-657)CCC>ACC	p.P219T	FLT4_uc003mlz.3_Missense_Mutation_p.P219T|FLT4_uc003mmb.1_5'Flank|FLT4_uc011dgy.1_Missense_Mutation_p.P219T|FLT4_uc011dgz.1_Missense_Mutation_p.P219T|FLT4_uc011dha.1_Silent_p.T202T	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	219	Ig-like C2-type 3.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	ACCAGGAAGGGGTTGGAAAGG	0.637	Colon(97;1075 1466 27033 27547 35871)		NA							Congenital_Hereditary_Lymphedema				8	33					1.06961e-07	1.42071e-07	0.00308	1	0
BTNL3	10917	broad.mit.edu	37	5	180419860	180419860	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:180419860G>A	uc003mmr.2	+	2	225	c.97G>A	c.(97-99)GGG>AGG	p.G33R		NM_197975	NP_932079	Q6UXE8	BTNL3_HUMAN	butyrophilin-like 3 precursor	33	Extracellular (Potential).				lipid metabolic process	integral to membrane					0	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.00336)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)|all_lung(500;0.248)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000272)			GGCCTTGGTGGGGGAGGACGC	0.537			NA											30	29					0	0	0.002836	0	0
CDYL	9425	broad.mit.edu	37	6	4735052	4735052	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:4735052G>C	uc003mwi.2	+	3	291	c.160G>C	c.(160-162)GGG>CGG	p.G54R		NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	54					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		TGAGCAAAGCGGGGCACAGCA	0.542			NA											14	49					0	0	0.00333	0	0
SLC17A2	10246	broad.mit.edu	37	6	25921630	25921630	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:25921630T>C	uc011dkb.1	-	3	334	c.251A>G	c.(250-252)TAT>TGT	p.Y84C	SLC17A2_uc011dkc.1_Missense_Mutation_p.Y84C|SLC17A2_uc003nfl.2_Missense_Mutation_p.Y84C			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	84					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						GCTCCATTGATACACAGAGGC	0.413			NA											6	38					0	0	0.00308	0	0
HIST1H1D	3007	broad.mit.edu	37	6	26234851	26234851	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:26234851C>G	uc003nhd.2	-	1	366	c.311G>C	c.(310-312)GGC>GCC	p.G104A		NM_005320	NP_005311	P16402	H13_HUMAN	histone cluster 1, H1d	104	H15.				nucleosome assembly	nucleosome|nucleus	DNA binding			skin(1)	1		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				TTTGAAGGAGCCAGAAGCACC	0.547			NA											4	178					0	0	0.000602	0	0
SCAND3	114821	broad.mit.edu	37	6	28539729	28539729	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:28539729C>G	uc003nlo.2	-	4	4555	c.3937G>C	c.(3937-3939)GAC>CAC	p.D1313H		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1313					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						gttaatttgtctaatctaggt	0			NA											18	70					0	0	0.007413	0	0
TRIM27	5987	broad.mit.edu	37	6	28872184	28872184	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:28872184G>C	uc003nlr.2	-	8	1564	c.1205C>G	c.(1204-1206)CCC>CGC	p.P402R	TRIM27_uc003nls.2_Intron|TRIM27_uc003nlt.1_3'UTR	NM_006510	NP_006501	P14373	TRI27_HUMAN	ret finger protein	402	B30.2/SPRY.				cell proliferation|negative regulation of gene expression, epigenetic|negative regulation of transcription from RNA polymerase II promoter|protein trimerization|spermatogenesis|transcription, DNA-dependent	cytoplasm|integral to plasma membrane|membrane fraction|nuclear membrane|PML body	DNA binding|protein binding|transmembrane receptor protein tyrosine kinase activity|zinc ion binding			ovary(1)	1						TCCATTCTGGGGGGCTGAGGT	0.542			NA	T	RET	papillary thyroid								16	75					0	0	0.003163	0	0
OR10C1	442194	broad.mit.edu	37	6	29408120	29408120	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:29408120G>T	uc011dlp.1	+	1	328	c.328G>T	c.(328-330)GAG>TAG	p.E110*	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGCGCCACGGAGTGCTGCCT	0.607			NA											22	68					3.62473e-10	5.21961e-10	0.012319	1	0
OR2H1	26716	broad.mit.edu	37	6	29429580	29429580	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:29429580C>A	uc003nmi.2	+	3	477	c.34C>A	c.(34-36)CTT>ATT	p.L12I	OR2H1_uc003nmj.1_Missense_Mutation_p.L12I|OR2H1_uc010jri.1_Intron	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	12	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGCTTCCTCCTTCTGGGCTT	0.517			NA											14	221					2.32078e-09	3.28752e-09	0.003163	1	0
OR2H1	26716	broad.mit.edu	37	6	29429884	29429884	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:29429884T>A	uc003nmi.2	+	3	781	c.338T>A	c.(337-339)CTG>CAG	p.L113Q	OR2H1_uc003nmj.1_Missense_Mutation_p.L113Q|OR2H1_uc010jri.1_Missense_Mutation_p.L35Q	NM_030883	NP_112145	Q9GZK4	OR2H1_HUMAN	olfactory receptor, family 2, subfamily H,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCATCCTCCTGACAGTGATG	0.602			NA											32	112					0	0	0.009535	0	0
TRIM40	135644	broad.mit.edu	37	6	30105048	30105048	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:30105048T>A	uc003npk.2	+	2	621	c.235T>A	c.(235-237)TGC>AGC	p.C79S	TRIM40_uc003npl.1_RNA|TRIM40_uc003npm.2_Missense_Mutation_p.C79S	NM_138700	NP_619645	Q6P9F5	TRI40_HUMAN	tripartite motif-containing 40	79	B box-type.					intracellular	zinc ion binding			ovary(1)	1						GAAGAGGGTGTGCAGGTTCTG	0.552			NA											13	82					0	0	0.001368	0	0
PI16	221476	broad.mit.edu	37	6	36930959	36930959	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:36930959C>T	uc003ona.2	+	5	1169	c.841C>T	c.(841-843)CCA>TCA	p.P281S	PI16_uc003omz.1_Intron|PI16_uc003onb.2_Intron|PI16_uc011dts.1_Missense_Mutation_p.P52S	NM_153370	NP_699201	Q6UXB8	PI16_HUMAN	protease inhibitor 16 precursor	281	Extracellular (Potential).					extracellular region|integral to membrane	peptidase inhibitor activity				0						AACAGAGGCTCCACCTTGCGT	0.582			NA											15	69					0	0	0.00245	0	0
UBR2	23304	broad.mit.edu	37	6	42613255	42613255	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:42613255A>G	uc011dur.1	+	21	2336	c.2336A>G	c.(2335-2337)AAG>AGG	p.K779R	UBR2_uc011dus.1_Missense_Mutation_p.K424R|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	779					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			GATGAAATCAAGCGAGAGATT	0.343			NA											15	47					0	0	0.00245	0	0
UBR2	23304	broad.mit.edu	37	6	42625764	42625764	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:42625764C>T	uc011dur.1	+	27	2875	c.2875C>T	c.(2875-2877)CCT>TCT	p.P959S	UBR2_uc011dus.1_Missense_Mutation_p.P604S|UBR2_uc003osh.2_RNA	NM_015255	NP_056070	Q8IWV8	UBR2_HUMAN	ubiquitin protein ligase E3 component n-recognin	959					cellular response to leucine|chromatin silencing|histone H2A ubiquitination|negative regulation of TOR signaling cascade	nucleus|plasma membrane	leucine binding|zinc ion binding			ovary(3)|pancreas(1)	4	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)|all cancers(41;0.004)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.196)			TGCCGTAGAACCTGGTGAAGC	0.393			NA											60	209					0	0	0.00361	0	0
GCM1	8521	broad.mit.edu	37	6	52993253	52993253	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:52993253T>C	uc003pbp.2	-	6	1271	c.1062A>G	c.(1060-1062)CCA>CCG	p.P354P		NM_003643	NP_003634	Q9NP62	GCM1_HUMAN	glial cells missing homolog a	354						transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			central_nervous_system(1)	1	Lung NSC(77;0.0755)					TTGGCCATAATGGGGGACAGC	0.493			NA											7	131					0	0	0.00308	0	0
FAM83B	222584	broad.mit.edu	37	6	54735190	54735190	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:54735190A>T	uc003pck.2	+	2	262	c.146A>T	c.(145-147)CAG>CTG	p.Q49L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	49										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					TTTCTTGTCCAGGAACGAGTT	0.388			NA											8	114					0	0	0.00308	0	0
FAM83B	222584	broad.mit.edu	37	6	54792420	54792420	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:54792420G>T	uc003pck.2	+	4	840	c.724G>T	c.(724-726)GGT>TGT	p.G242C		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	242										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGTGATGTACGGTTCTTACAG	0.303			NA											29	94					1.74807e-11	2.6221e-11	0.010818	1	0
COL21A1	81578	broad.mit.edu	37	6	56006587	56006587	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:56006587T>C	uc003pcs.2	-	12	1770	c.1538A>G	c.(1537-1539)GAC>GGC	p.D513G	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.D513G|COL21A1_uc003pcu.1_Missense_Mutation_p.D510G	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	513					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GTTTACCTTGTCACCATCTCG	0.393			NA											5	72					0	0	0.00308	0	0
DST	667	broad.mit.edu	37	6	56391360	56391360	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:56391360C>T	uc003pdf.2	-	63	11599	c.11571G>A	c.(11569-11571)CTG>CTA	p.L3857L	DST_uc003pcz.3_Silent_p.L3679L|DST_uc011dxj.1_Silent_p.L3708L|DST_uc011dxk.1_Silent_p.L3719L|DST_uc003pcy.3_Silent_p.L3353L	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	5765					cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			CTTCCTTTTTCAGTTCCTGAA	0.413			NA											30	127					0	0	0.009535	0	0
COL19A1	1310	broad.mit.edu	37	6	70647965	70647965	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:70647965T>A	uc003pfc.1	+	9	1026	c.909T>A	c.(907-909)CCT>CCA	p.P303P	COL19A1_uc010kam.1_Silent_p.P199P	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	303	Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CGGGTTCACCTGGGCAGAAAG	0.398			NA											4	46					0	0	0.009096	0	0
RIMS1	22999	broad.mit.edu	37	6	72806789	72806789	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:72806789G>A	uc003pga.2	+	3	460	c.383G>A	c.(382-384)TGC>TAC	p.C128Y		NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	128	RabBD.|FYVE-type.				calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				GCTGATGGGTGCGGTCATCTC	0.517			NA											9	37					0	0	0.004482	0	0
CD109	135228	broad.mit.edu	37	6	74475751	74475751	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:74475751G>T	uc003php.2	+	11	1631	c.1206G>T	c.(1204-1206)TGG>TGT	p.W402C	CD109_uc010kaz.2_Missense_Mutation_p.W402C|CD109_uc003phq.2_Missense_Mutation_p.W402C|CD109_uc010kba.2_Missense_Mutation_p.W325C	NM_133493	NP_598000	Q6YHK3	CD109_HUMAN	CD109 antigen isoform 1 precursor	402						anchored to membrane|extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			large_intestine(2)|ovary(2)	4						CTGAGTACTGGAGCGGATCTA	0.393			NA											16	42					4.7546e-09	6.62725e-09	0.004007	1	0
TBX18	9096	broad.mit.edu	37	6	85446986	85446987	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:85446986_85446987GG>TT	uc003pkl.1	-	8	1240_1241	c.1240_1241CC>AA	c.(1240-1242)CCT>AAT	p.P414N	TBX18_uc010kbq.1_Intron	NM_001080508	NP_001073977	O95935	TBX18_HUMAN	T-box 18	414					multicellular organismal development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|pancreas(2)|lung(1)	5		all_cancers(76;0.000283)|Acute lymphoblastic leukemia(125;3.66e-08)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0858)		BRCA - Breast invasive adenocarcinoma(108;0.0267)		ATAGTCAGCAGGGGCCAGACTA	0.594			NA											19	68					0	0	0.004672	0	0
EPHA7	2045	broad.mit.edu	37	6	93964513	93964513	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:93964513C>A	uc003poe.2	-	14	2625	c.2384G>T	c.(2383-2385)GGT>GTT	p.G795V	EPHA7_uc003pof.2_Missense_Mutation_p.G790V|EPHA7_uc011eac.1_Missense_Mutation_p.G791V	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	795	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AATTTTTCCACCCTGTTATAA	0.353			NA											4	28					0.00909568	0.00961122	0.009096	1	0
EPHA7	2045	broad.mit.edu	37	6	93974360	93974360	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:93974360C>A	uc003poe.2	-	8	1935	c.1694G>T	c.(1693-1695)GGG>GTG	p.G565V	EPHA7_uc003pof.2_Missense_Mutation_p.G560V|EPHA7_uc011eac.1_Missense_Mutation_p.G565V	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	565	Helical; (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		AATGATGGTCCCAGCTACAGC	0.388			NA											22	52					5.45024e-15	8.75392e-15	0.00333	1	0
LIN28B	389421	broad.mit.edu	37	6	105406060	105406060	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:105406060C>A	uc003pqv.1	+	2	300	c.97C>A	c.(97-99)CAC>AAC	p.H33N	LIN28B_uc010kda.1_5'UTR	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	33	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				CGGAACTGGCCACTGTAAGTG	0.547			NA											28	115					0.000184323	0.000208487	0.007291	1	0
SOBP	55084	broad.mit.edu	37	6	107956574	107956574	+	Silent	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:107956574G>C	uc003prx.2	+	6	3030	c.2526G>C	c.(2524-2526)CCG>CCC	p.P842P		NM_018013	NP_060483	A7XYQ1	SOBP_HUMAN	sine oculis binding protein homolog	842							metal ion binding			ovary(1)	1		all_cancers(87;5.26e-06)|Acute lymphoblastic leukemia(125;2.87e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.00193)|Colorectal(196;0.156)		BRCA - Breast invasive adenocarcinoma(108;0.026)|all cancers(137;0.087)|Epithelial(106;0.104)|OV - Ovarian serous cystadenocarcinoma(136;0.154)		CCATGGCACCGTGCATCATCT	0.612			NA											11	87					0	0	0.010729	0	0
NR2E1	7101	broad.mit.edu	37	6	108502825	108502825	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:108502825A>T	uc003psg.2	+	8	1720	c.965A>T	c.(964-966)CAG>CTG	p.Q322L		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	322	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		GATGAGGCTCAGCTAACGCTC	0.473			NA											13	70					0	0	0.00245	0	0
C6orf182	285753	broad.mit.edu	37	6	109471397	109471397	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:109471397G>T	uc010kdk.2	+	6	994	c.417G>T	c.(415-417)ATG>ATT	p.M139I	C6orf182_uc003psv.3_Missense_Mutation_p.M123I|C6orf182_uc003psw.3_Missense_Mutation_p.M139I|C6orf182_uc003psx.3_Missense_Mutation_p.M139I|C6orf182_uc010kdl.2_Missense_Mutation_p.M139I|C6orf182_uc003psy.3_Missense_Mutation_p.M139I	NM_001083535	NP_001077004	Q8IYX8	CE57L_HUMAN	hypothetical protein LOC285753	139	Potential.					microtubule|microtubule organizing center					0		all_cancers(87;4.45e-07)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(75;3.25e-08)|all_epithelial(87;0.000254)|Colorectal(196;0.0293)|all_lung(197;0.11)		BRCA - Breast invasive adenocarcinoma(108;0.00123)|Epithelial(106;0.0022)|all cancers(137;0.00405)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)		CAAAGAGAATGGTTCTCAACG	0.299			NA											6	138					8.12818e-05	9.32508e-05	0.001984	1	0
C6orf182	285753	broad.mit.edu	37	6	109484117	109484117	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:109484117C>T	uc010kdk.2	+	13	1904	c.1327C>T	c.(1327-1329)CGA>TGA	p.R443*	C6orf182_uc003psx.3_3'UTR|C6orf182_uc010kdl.2_Nonsense_Mutation_p.R443*|C6orf182_uc003psy.3_Nonsense_Mutation_p.R443*	NM_001083535	NP_001077004	Q8IYX8	CE57L_HUMAN	hypothetical protein LOC285753	443						microtubule|microtubule organizing center					0		all_cancers(87;4.45e-07)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(75;3.25e-08)|all_epithelial(87;0.000254)|Colorectal(196;0.0293)|all_lung(197;0.11)		BRCA - Breast invasive adenocarcinoma(108;0.00123)|Epithelial(106;0.0022)|all cancers(137;0.00405)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)		TCATCCAATACGAGTTCATAA	0.358			NA											4	47					0	0	0.009096	0	0
AKD1	221264	broad.mit.edu	37	6	109954510	109954510	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:109954510G>A	uc003ptn.2	-	11	1027	c.950C>T	c.(949-951)ACT>ATT	p.T317I	AKD1_uc003ptr.3_Missense_Mutation_p.T317I	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	317					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						AGATGCAAGAGTACGAAATAG	0.303			NA											4	20					0	0	0.009096	0	0
EPB41L2	2037	broad.mit.edu	37	6	131186758	131186759	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:131186758_131186759CC>AA	uc003qch.2	-	17	2928_2929	c.2746_2747GG>TT	c.(2746-2748)GGT>TTT	p.G916F	EPB41L2_uc003qce.1_Missense_Mutation_p.G294F|EPB41L2_uc003qcf.1_Intron|EPB41L2_uc003qcg.1_Missense_Mutation_p.G658F|EPB41L2_uc011eby.1_Intron|EPB41L2_uc003qci.2_Missense_Mutation_p.G763F|EPB41L2_uc010kfk.2_Intron|EPB41L2_uc003qcd.1_Missense_Mutation_p.G77F	NM_001431	NP_001422	O43491	E41L2_HUMAN	erythrocyte membrane protein band 4.1-like 2	916	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	extrinsic to membrane|plasma membrane|spectrin	actin binding|structural molecule activity			central_nervous_system(1)|skin(1)	2	Breast(56;0.0639)			OV - Ovarian serous cystadenocarcinoma(155;0.0271)|GBM - Glioblastoma multiforme(226;0.0355)		CGAATCACCACCAGCCCCGCCA	0.48			NA											8	58					0	0	0.004672	0	0
KIAA1244	57221	broad.mit.edu	37	6	138584558	138584558	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:138584558C>T	uc003qhu.2	+	12	1938	c.1938C>T	c.(1936-1938)GAC>GAT	p.D646D		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	646	SEC7.				regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CACCCCGGGACTGCCTAGGCC	0.587			NA											4	111					0	0	0.000602	0	0
LATS1	9113	broad.mit.edu	37	6	150004813	150004813	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:150004813T>C	uc003qmu.1	-	4	1960	c.1412A>G	c.(1411-1413)AAT>AGT	p.N471S	LATS1_uc010kif.1_Missense_Mutation_p.N366S|LATS1_uc003qmv.1_Missense_Mutation_p.N471S|LATS1_uc003qmw.2_Missense_Mutation_p.N471S|LATS1_uc010kig.1_Missense_Mutation_p.N366S	NM_004690	NP_004681	O95835	LATS1_HUMAN	LATS homolog 1	471					cell division|cytoplasmic sequestering of protein|G2/M transition of mitotic cell cycle|hippo signaling cascade|hormone-mediated signaling pathway|mitosis|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|positive regulation of peptidyl-serine phosphorylation|regulation of actin filament polymerization|sister chromatid segregation	microtubule organizing center|spindle pole	ATP binding|magnesium ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(5)|central_nervous_system(1)	6		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;6.93e-13)|GBM - Glioblastoma multiforme(68;0.116)		ACTTGCTCTATTTCCTAATGG	0.448			NA											44	159					0	0	0.00361	0	0
SYNE1	23345	broad.mit.edu	37	6	152545687	152545687	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:152545687C>A	uc010kiw.2	-	117	22066	c.21464G>T	c.(21463-21465)CGA>CTA	p.R7155L	SYNE1_uc010kiv.2_Missense_Mutation_p.R1679L|SYNE1_uc003qos.3_Missense_Mutation_p.R1679L|SYNE1_uc003qot.3_Missense_Mutation_p.R7084L|SYNE1_uc003qou.3_Missense_Mutation_p.R7155L|SYNE1_uc003qor.3_Missense_Mutation_p.R55L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7155	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAGACGGAATCGGGAAAGAGA	0.418			NA								HNSCC(10;0.0054)			16	48					8.60227e-14	1.34443e-13	0.004007	1	0
SYNE1	23345	broad.mit.edu	37	6	152640026	152640026	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:152640026T>G	uc010kiw.2	-	85	16963	c.16361A>C	c.(16360-16362)AAT>ACT	p.N5454T	SYNE1_uc010kiv.2_5'Flank|SYNE1_uc003qos.3_5'Flank|SYNE1_uc003qot.3_Missense_Mutation_p.N5383T|SYNE1_uc003qou.3_Missense_Mutation_p.N5454T|SYNE1_uc010kiz.2_Missense_Mutation_p.N1209T	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5454	Potential.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTGAACTACATTATCTGTCTT	0.393			NA								HNSCC(10;0.0054)			14	32					0	0	0.003163	0	0
PARK2	5071	broad.mit.edu	37	6	162475170	162475170	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:162475170G>T	uc003qtx.3	-	5	705	c.571C>A	c.(571-573)CGG>AGG	p.R191R	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_5'UTR|PARK2_uc003qtw.3_5'UTR|PARK2_uc003qty.3_Intron|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Silent_p.R191R	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	191					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		CCACTCATCCGGTTTGGAATT	0.393			NA											14	58					9.31168e-06	1.13435e-05	0.001855	1	0
PDE10A	10846	broad.mit.edu	37	6	165801929	165801929	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:165801929A>T	uc003qun.2	-	18	1881	c.1640T>A	c.(1639-1641)CTG>CAG	p.L547Q	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.L477Q|PDE10A_uc003quo.2_Missense_Mutation_p.L557Q	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	547					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	ACACGCAATCAGCAGTCCTTT	0.473	Esophageal Squamous(22;308 615 5753 12038 40624)		NA											16	75					0	0	0.00499	0	0
C6orf70	55780	broad.mit.edu	37	6	170160823	170160823	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:170160823A>G	uc003qxg.1	+	8	861	c.828A>G	c.(826-828)GAA>GAG	p.E276E	C6orf70_uc011ehb.1_Silent_p.E150E|C6orf70_uc003qxh.1_Silent_p.E276E|C6orf70_uc010kky.1_Silent_p.E150E	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	276				E -> G (in Ref. 1; BAA92035).		integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		CATATTGGGAAGTTGCACTGG	0.378			NA											5	23					0	0	0.000602	0	0
FERD3L	222894	broad.mit.edu	37	7	19184867	19184867	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:19184867C>A	uc003suo.1	-	1	178	c.119G>T	c.(118-120)GGG>GTG	p.G40V	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	40					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						GGCTGGGTCCCCCAAGGAGAC	0.512			NA											7	35					1.12685e-05	1.36319e-05	0.004482	1	0
ABCB5	340273	broad.mit.edu	37	7	20721275	20721275	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:20721275C>T	uc003suw.3	+	6	1066	c.520C>T	c.(520-522)CTT>TTT	p.L174F	ABCB5_uc010kuh.2_Missense_Mutation_p.L619F	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	174	ABC transporter 1.|Extracellular (Potential).				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATATTATTCACTTGTGATGTC	0.393			NA											7	43					0	0	0.001984	0	0
KIAA0895	23366	broad.mit.edu	37	7	36429683	36429683	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:36429683T>A	uc003tfd.2	-	1	52	c.1A>T	c.(1-3)ATG>TTG	p.M1L	ANLN_uc003tff.2_Intron|ANLN_uc011kaz.1_Intron|ANLN_uc003tfg.2_Intron|ANLN_uc010kxe.2_Intron	NM_001100425	NP_001093895	Q8NCT3	K0895_HUMAN	hypothetical protein LOC23366 isoform 1	1											0						CAGCCAGCCATGACCCACCGC	0.642			NA											6	48					0	0	0.001984	0	0
FIGNL1	63979	broad.mit.edu	37	7	50513772	50513772	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:50513772C>A	uc003tpc.2	-	4	1591	c.1214G>T	c.(1213-1215)GGA>GTA	p.G405V	FIGNL1_uc003tpb.2_Missense_Mutation_p.G294V|FIGNL1_uc003tpd.2_Missense_Mutation_p.G405V|FIGNL1_uc003tpe.2_Missense_Mutation_p.G405V|FIGNL1_uc010kyy.2_Missense_Mutation_p.G405V	NM_001042762	NP_001036227	Q6PIW4	FIGL1_HUMAN	fidgetin-like 1	405					ATP metabolic process|negative regulation of apoptosis|osteoblast differentiation|osteoblast proliferation|regulation of cell cycle	cytoplasm|nucleus	ATP binding|magnesium ion binding|nucleoside-triphosphatase activity			ovary(3)	3	Glioma(55;0.08)|all_neural(89;0.245)	Acute lymphoblastic leukemia(4;3.73e-08)|all_hematologic(4;7.51e-06)				AAATTCTACTCCTGCAATATC	0.413			NA											39	156					4.32679e-17	7.19295e-17	0.006999	1	0
ZNF716	441234	broad.mit.edu	37	7	57522834	57522834	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:57522834C>A	uc011kdi.1	+	3	334	c.222C>A	c.(220-222)CCC>CCA	p.P74P		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						ATAAAGAGCCCCAGAATATAA	0.403			NA											23	141					1.77063e-15	2.87935e-15	0.005443	1	0
SPDYE5	442590	broad.mit.edu	37	7	75130743	75130743	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:75130743C>A	uc011kfy.1	+	5	829	c.693C>A	c.(691-693)CAC>CAA	p.H231Q		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	231											0						ACATCTTCCACTTCCTGTATG	0.552			NA											46	127					3.61411e-23	6.25727e-23	0.00361	1	0
HGF	3082	broad.mit.edu	37	7	81388097	81388097	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:81388097C>G	uc003uhl.2	-	3	443	c.278G>C	c.(277-279)AGA>ACA	p.R93T	HGF_uc003uhm.2_Missense_Mutation_p.R93T|HGF_uc003uhn.1_Missense_Mutation_p.R93T|HGF_uc003uho.1_Missense_Mutation_p.R93T|HGF_uc003uhp.2_Missense_Mutation_p.R93T	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	93	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						GCATTGTTTTCTTGCTTTATC	0.328			NA											4	100					0	0	0.000602	0	0
PCLO	27445	broad.mit.edu	37	7	82585417	82585417	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:82585417T>C	uc003uhx.2	-	5	5141	c.4852A>G	c.(4852-4854)AGC>GGC	p.S1618G	PCLO_uc003uhv.2_Missense_Mutation_p.S1618G	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1549					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCATCAATGCTTGTGCTACTT	0.408			NA											9	376					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82595231	82595231	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:82595231T>A	uc003uhx.2	-	4	4162	c.3873A>T	c.(3871-3873)CCA>CCT	p.P1291P	PCLO_uc003uhv.2_Silent_p.P1291P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1230					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCTTGGTCTGTGGTTGTTTCC	0.408			NA											40	148					0	0	0.00623	0	0
FZD1	8321	broad.mit.edu	37	7	90896045	90896045	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:90896045C>T	uc003ula.2	+	1	2263	c.1850C>T	c.(1849-1851)TCG>TTG	p.S617L		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	617	Helical; Name=7; (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			GGCATCACGTCGGGCTTCTGG	0.607			NA											8	59					0	0	0.00308	0	0
ZNF498	221785	broad.mit.edu	37	7	99219026	99219026	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:99219026G>A	uc003url.1	+	5	745	c.418G>A	c.(418-420)GAA>AAA	p.E140K	ZNF498_uc003urm.1_5'UTR|ZNF498_uc010lge.1_5'UTR|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Missense_Mutation_p.E140K|ZNF498_uc003uro.1_5'UTR	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	140					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					AGAGCAGGAGGAAACAGCACT	0.567			NA											6	112					0	0	0.001168	0	0
OR2AE1	81392	broad.mit.edu	37	7	99474611	99474611	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:99474611C>A	uc003usc.1	-	1	46	c.46G>T	c.(46-48)GGG>TGG	p.G16W		NM_001005276	NP_001005276	Q8NHA4	O2AE1_HUMAN	olfactory receptor, family 2, subfamily AE,	16	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					TCGAAGAGCCCCTCAAGGATG	0.498			NA											16	99					3.52763e-06	4.37393e-06	0.00499	1	0
LRWD1	222229	broad.mit.edu	37	7	102108635	102108635	+	Splice_Site	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:102108635G>C	uc003uzn.2	+	6	942	c.804_splice	c.e6+1	p.Q268_splice	LRWD1_uc003uzo.2_Splice_Site_p.Q116_splice	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain						chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						TGGCAGCCAGGTGAGCTGAGG	0.682			NA											4	23					0	0	0.009096	0	0
SLC26A3	1811	broad.mit.edu	37	7	107418628	107418628	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:107418628C>A	uc003ver.2	-	13	1717	c.1506G>T	c.(1504-1506)AGG>AGT	p.R502S	SLC26A3_uc003ves.2_Missense_Mutation_p.R467S	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	502					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						ACAATTGGGTCCTGAACACGA	0.473			NA											4	29					0.00909568	0.00961122	0.009096	1	0
EIF3IP1	442720	broad.mit.edu	37	7	109599839	109599839	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:109599839C>T	uc003vfp.1	-	1	432	c.259G>A	c.(259-261)GAG>AAG	p.E87K		NR_003024				Homo sapiens eukaryotic translation initiation factor 3, subunit I pseudogene 1 (EIF3IP1), non-coding RNA.												0						AGGTAGCACTCATTGCTGTCA	0.493			NA											6	43					0	0	0.001168	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113517986	113517986	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:113517986A>G	uc010ljy.1	-	4	3192	c.3161T>C	c.(3160-3162)CTT>CCT	p.L1054P		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1054					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						CTCAACAGGAAGACTAGTAGA	0.363			NA											27	181					0	0	0.005443	0	0
MDFIC	29969	broad.mit.edu	37	7	114655879	114655879	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:114655879G>A	uc003vhf.2	+	5	1221	c.958G>A	c.(958-960)GAT>AAT	p.D320N		NM_199072	NP_951038	Q9P1T7	MDFIC_HUMAN	MyoD family inhibitor domain containing protein	211	Cys-rich.				activation of JUN kinase activity|interspecies interaction between organisms|negative regulation of protein import into nucleus|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|regulation of Wnt receptor signaling pathway|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleolus|nucleus	cyclin binding|Tat protein binding			ovary(1)	1						GATGGGGGATGATTGTAACTG	0.488			NA											14	236					0	0	0.00245	0	0
CFTR	1080	broad.mit.edu	37	7	117243607	117243607	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:117243607G>T	uc003vjd.2	+	17	2811	c.2679G>T	c.(2677-2679)GGG>GGT	p.G893G	CFTR_uc011knq.1_Silent_p.G299G	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	893	ABC transmembrane type-1 2.|Extracellular (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	AAGACAAAGGGAATAGTACTC	0.378			NA							Cystic_Fibrosis				14	52					2.31682e-05	2.75172e-05	0.003163	1	0
ANKRD7	56311	broad.mit.edu	37	7	117874821	117874821	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:117874821A>T	uc003vji.2	+	3	534	c.361A>T	c.(361-363)AGG>TGG	p.R121W		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	121					male gonad development						0						CCCAGATCTGAGGGATATTCG	0.378			NA											11	111					0	0	0.010729	0	0
KCND2	3751	broad.mit.edu	37	7	119915484	119915484	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:119915484C>A	uc003vjj.1	+	1	1763	c.798C>A	c.(796-798)GAC>GAA	p.D266E		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	266	Helical; Name=Segment S3; (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					GTATCATCGACGTGGTGGCCA	0.532			NA											9	59					7.48243e-07	9.59663e-07	0.006214	1	0
LMOD2	442721	broad.mit.edu	37	7	123302675	123302675	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:123302675G>A	uc003vky.2	+	2	1192	c.1035G>A	c.(1033-1035)ACG>ACA	p.T345T		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	345						cytoskeleton	actin binding|tropomyosin binding				0						TGAGCATGACGAGCATTTTGA	0.478			NA											6	124					0	0	0.001168	0	0
GCC1	79571	broad.mit.edu	37	7	127223074	127223074	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:127223074C>A	uc003vma.2	-	2	1740	c.1322G>T	c.(1321-1323)AGG>ATG	p.R441M		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	441	Potential.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						CTGCAGCAGCCTCTTCAGCTT	0.567			NA											42	153					1.00001e-27	1.76353e-27	0.009718	1	0
LRGUK	136332	broad.mit.edu	37	7	133821833	133821833	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:133821833G>T	uc003vrm.1	+	2	371	c.355G>T	c.(355-357)GGG>TGG	p.G119W		NM_144648	NP_653249	Q96M69	LRGUK_HUMAN	leucine-rich repeats and guanylate kinase domain	119							ATP binding|kinase activity			lung(2)|skin(2)|kidney(1)	5						CCATCACTTGGGGCGCTCAGG	0.473			NA											15	32					1.52009e-12	2.32694e-12	0.003163	1	0
ATP6V0A4	50617	broad.mit.edu	37	7	138413517	138413517	+	Missense_Mutation	SNP	G	G	A	rs150175783	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:138413517G>A	uc003vuf.2	-	17	2237	c.1999C>T	c.(1999-2001)CGG>TGG	p.R667W	ATP6V0A4_uc003vug.2_Missense_Mutation_p.R667W|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.R667W	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	667	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						TGGGATTTCCGATGACTGGCT	0.433			NA											12	289					0	0	0.001368	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138417828	138417828	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:138417828T>C	uc003vuf.2	-	16	1940	c.1702A>G	c.(1702-1704)AGA>GGA	p.R568G	ATP6V0A4_uc003vug.2_Missense_Mutation_p.R568G|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.R568G	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	568	Lumenal (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						TTGAGAGTTCTTCTGAAGTAT	0.378			NA											10	33					0	0	0.008291	0	0
AGK	55750	broad.mit.edu	37	7	141352626	141352626	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:141352626G>A	uc003vwi.2	+	16	1342	c.1171G>A	c.(1171-1173)GAA>AAA	p.E391K		NM_018238	NP_060708	Q53H12	AGK_HUMAN	acylglycerol kinase precursor	391					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway	mitochondrial membrane	acylglycerol kinase activity|ATP binding|diacylglycerol kinase activity|NAD+ kinase activity			ovary(1)|breast(1)	2	Melanoma(164;0.0171)					TGAGGAGTATGAAGCGATGCC	0.527			NA											10	101					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	7	142001015	142001015	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:142001015A>T	uc011kro.1	+	2	152	c.107A>T	c.(106-108)CAG>CTG	p.Q36L						SubName: Full=V_segment translation product; Flags: Fragment;												NA						CAGATGGGACAGGAAGTGATC	0.433			NA											6	20					0	0	0.001984	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453488	143453488	+	Nonsense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:143453488T>A	uc003wdk.3	-	1	1356	c.1264A>T	c.(1264-1266)AAG>TAG	p.K422*	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	422	Potential.					integral to membrane					0	Melanoma(164;0.0903)					CGGCTGAGCTTTTCTTCCACT	0.378			NA											9	337					0	0	0.004482	0	0
C7orf33	202865	broad.mit.edu	37	7	148311163	148311163	+	Silent	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:148311163G>T	uc003wew.2	+	2	595	c.234G>T	c.(232-234)CGG>CGT	p.R78R		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	78										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			ACATGAACCGGGGGATGGAAT	0.453			NA											15	78					1.5739e-10	2.30133e-10	0.004007	1	0
ZNF746	155061	broad.mit.edu	37	7	149174083	149174083	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:149174083G>A	uc003wfw.2	-	6	1039	c.768C>T	c.(766-768)CTC>CTT	p.L256L	ZNF746_uc010lpi.2_Silent_p.L256L	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	256					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			GGTGGGGAGGGAGATCCGTTT	0.627			NA											11	73					0	0	0.010729	0	0
MLL3	58508	broad.mit.edu	37	7	151878797	151878797	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr7:151878797G>A	uc003wla.2	-	36	6367	c.6148C>T	c.(6148-6150)CCT>TCT	p.P2050S	MLL3_uc003wkz.2_Missense_Mutation_p.P1111S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	2050	Pro-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GAGGATGGAGGAGGTTGCATT	0.473	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								8	71					0	0	0.00308	0	0
CSMD1	64478	broad.mit.edu	37	8	3087561	3087561	+	Splice_Site	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:3087561C>A	uc011kwk.1	-	27	4738	c.4348_splice	c.e27+1	p.A1450_splice	CSMD1_uc011kwj.1_Splice_Site_p.A842_splice|CSMD1_uc003wqe.2_Splice_Site_p.A606_splice	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor							integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTGTCTGATACCTATGCATGT	0.413			NA											4	74					2.56e-06	3.2046e-06	0.009096	1	0
RP1L1	94137	broad.mit.edu	37	8	10468347	10468347	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:10468347C>A	uc003wtc.2	-	4	3490	c.3261G>T	c.(3259-3261)AGG>AGT	p.R1087S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1087					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CCATCAGCGCCCTCATGATCT	0.687			NA											9	52					3.09899e-07	4.05431e-07	0.004482	1	0
RP1L1	94137	broad.mit.edu	37	8	10470559	10470559	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:10470559G>T	uc003wtc.2	-	4	1278	c.1049C>A	c.(1048-1050)ACG>AAG	p.T350K		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	350					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		ACTGGCTGCCGTGAGGGCGCT	0.672			NA											27	65					3.73988e-18	6.29748e-18	0.00632	1	0
RP1L1	94137	broad.mit.edu	37	8	10480731	10480731	+	Splice_Site	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:10480731C>A	uc003wtc.2	-	2	211	c.-18_splice	c.e2-1			NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1						intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GCTCTGGCCGCTGTAACAGGG	0.627			NA											9	29					5.68852e-11	8.37633e-11	0.004482	1	0
MTMR9	66036	broad.mit.edu	37	8	11163743	11163743	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:11163743G>T	uc003wtm.2	+	5	1034	c.636G>T	c.(634-636)AGG>AGT	p.R212S	MTMR9_uc010lrx.2_Missense_Mutation_p.R105S|MTMR9_uc011kxa.1_Missense_Mutation_p.R127S	NM_015458	NP_056273	Q96QG7	MTMR9_HUMAN	myotubularin related protein 9	212	Myotubularin phosphatase.					cytoplasm	phosphatase activity|protein binding				0			STAD - Stomach adenocarcinoma(15;0.215)	COAD - Colon adenocarcinoma(149;0.0678)		CAAACGGGAGGAGGTGCAAGG	0.463			NA											6	43					0.00198382	0.00214179	0.001984	1	0
SLC18A1	6570	broad.mit.edu	37	8	20004891	20004891	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:20004891C>A	uc011kyq.1	-	16	1813	c.1342G>T	c.(1342-1344)GGT>TGT	p.G448C	SLC18A1_uc003wzl.2_Missense_Mutation_p.G235C|SLC18A1_uc003wzm.2_Missense_Mutation_p.G448C|SLC18A1_uc011kyr.1_Intron|SLC18A1_uc003wzn.2_Missense_Mutation_p.G416C|SLC18A1_uc010ltf.2_RNA|SLC18A1_uc003wzo.2_Missense_Mutation_p.G416C	NM_001135691	NP_001129163	P54219	VMAT1_HUMAN	solute carrier family 18 (vesicular monoamine),	448	Lumenal, vesicle (Potential).				neurotransmitter transport	clathrin sculpted monoamine transport vesicle membrane|integral to membrane|membrane fraction	drug transmembrane transporter activity|monoamine transmembrane transporter activity			ovary(2)	2				Colorectal(74;0.0747)		ATGGCACCACCGGTGGATGGA	0.542			NA											11	37					4.68919e-08	6.30865e-08	0.008291	1	0
RNF5P1	286140	broad.mit.edu	37	8	38458585	38458585	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:38458585A>T	uc003xly.2	-	1	191	c.134T>A	c.(133-135)CTG>CAG	p.L45Q		NR_003129				SubName: Full=Putative uncharacterized protein RNF5;												0						CCAACAGTACAGGTGGCCACA	0.577			NA											5	56					0	0	0.001168	0	0
CHRNA6	8973	broad.mit.edu	37	8	42611846	42611846	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:42611846G>A	uc003xpj.2	-	5	542	c.496C>T	c.(496-498)CCT>TCT	p.P166S	CHRNA6_uc011lcw.1_Missense_Mutation_p.P151S	NM_004198	NP_004189	Q15825	ACHA6_HUMAN	cholinergic receptor, nicotinic, alpha 6	166	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(13;3.33e-12)|Lung NSC(13;9.17e-11)|Ovarian(28;0.01)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00439)|Lung NSC(58;0.0124)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	Lung(22;0.0252)|LUSC - Lung squamous cell carcinoma(45;0.0869)			TGATCAAAAGGGAAAAAGGTG	0.368			NA											15	102					0	0	0.00245	0	0
MCM4	4173	broad.mit.edu	37	8	48883377	48883377	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:48883377G>A	uc003xqk.1	+	12	1836	c.1741G>A	c.(1741-1743)GAA>AAA	p.E581K	MCM4_uc003xql.1_Missense_Mutation_p.E581K|MCM4_uc011ldi.1_Missense_Mutation_p.E568K	NM_182746	NP_877423	P33991	MCM4_HUMAN	minichromosome maintenance complex component 4	581	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(2)|skin(2)	4		all_cancers(86;0.026)|all_epithelial(80;0.000748)|Lung NSC(129;0.00327)|all_lung(136;0.00354)				CAAGATGAATGAAAGTACAAG	0.478			NA											8	56					0	0	0.00308	0	0
PCMTD1	115294	broad.mit.edu	37	8	52732947	52732947	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:52732947A>G	uc003xqx.3	-	6	1379	c.1038T>C	c.(1036-1038)TCT>TCC	p.S346S	PCMTD1_uc011ldm.1_Silent_p.S216S|PCMTD1_uc003xqw.3_Silent_p.S346S|PCMTD1_uc011ldn.1_Silent_p.S158S|PCMTD1_uc010lya.2_Silent_p.S270S	NM_052937	NP_443169	Q96MG8	PCMD1_HUMAN	protein-L-isoaspartate (D-aspartate)	346						cytoplasm	protein-L-isoaspartate (D-aspartate) O-methyltransferase activity				0		Lung NSC(129;0.0795)|all_lung(136;0.144)				AAGCTTTTAAAGATTCAGGGA	0.313			NA											3	86					0	0	0.009096	0	0
RGS20	8601	broad.mit.edu	37	8	54764607	54764607	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:54764607G>T	uc003xrp.2	+	1	240	c.148G>T	c.(148-150)GCT>TCT	p.A50S	RGS20_uc003xrq.2_Missense_Mutation_p.A50S|RGS20_uc010lye.2_Silent_p.G6G|RGS20_uc010lyf.2_Silent_p.G6G	NM_170587	NP_733466	O76081	RGS20_HUMAN	regulator of G-protein signaling 20 isoform a	50					negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|nucleus|plasma membrane	GTPase activator activity|protein binding|signal transducer activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(7;1.37e-06)|Epithelial(17;0.000126)|all cancers(17;0.0009)			AGACCTCAGGGCTGTTCCTGA	0.433			NA											7	65					5.18039e-06	6.39282e-06	0.00308	1	0
RP1	6101	broad.mit.edu	37	8	55541512	55541512	+	Silent	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:55541512A>T	uc003xsd.1	+	4	5218	c.5070A>T	c.(5068-5070)TCA>TCT	p.S1690S	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1690	Poly-Ser.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CTAGTAGTTCATCTATGTTGC	0.408	Colon(91;1014 1389 7634 14542 40420)		NA											80	96					0	0	0.00361	0	0
CRISPLD1	83690	broad.mit.edu	37	8	75941685	75941685	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:75941685G>A	uc003yan.2	+	14	1759	c.1384G>A	c.(1384-1386)GAT>AAT	p.D462N	CRISPLD1_uc011lfk.1_Missense_Mutation_p.D274N|CRISPLD1_uc011lfl.1_Missense_Mutation_p.D274N	NM_031461	NP_113649	Q9H336	CRLD1_HUMAN	cysteine-rich secretory protein LCCL domain	462	LCCL 2.					extracellular region				ovary(1)|central_nervous_system(1)	2	Breast(64;0.0799)		Epithelial(68;0.155)|BRCA - Breast invasive adenocarcinoma(89;0.161)			TGGTTATGTTGATGTAATGCC	0.378			NA											6	65					0	0	0.001168	0	0
ZFHX4	79776	broad.mit.edu	37	8	77616325	77616325	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:77616325T>A	uc003yav.2	+	2	389	c.2T>A	c.(1-3)ATG>AAG	p.M1K	ZFHX4_uc003yat.1_Missense_Mutation_p.M1K|ZFHX4_uc003yau.1_Missense_Mutation_p.M1K|ZFHX4_uc003yaw.1_Missense_Mutation_p.M1K	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GCAATTGCCATGGAAACCTGT	0.438			NA								HNSCC(33;0.089)			5	37					0	0	0.000602	0	0
ZFHX4	79776	broad.mit.edu	37	8	77764826	77764826	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:77764826C>A	uc003yav.2	+	10	5921	c.5534C>A	c.(5533-5535)TCC>TAC	p.S1845Y	ZFHX4_uc003yau.1_Missense_Mutation_p.S1890Y|ZFHX4_uc003yaw.1_Missense_Mutation_p.S1845Y	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1845						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AAGCAAAAATCCTTGGAACCA	0.433			NA								HNSCC(33;0.089)			9	20					9.70103e-10	1.3817e-09	0.008291	1	0
ZFHX4	79776	broad.mit.edu	37	8	77775789	77775789	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:77775789G>T	uc003yav.2	+	11	10091	c.9704G>T	c.(9703-9705)GGA>GTA	p.G3235V		NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3231						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.A3235G(1)		ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGCTCCCTGGAACAGTGCAG	0.527			NA								HNSCC(33;0.089)			56	128					3.40343e-31	6.06344e-31	0.00361	1	0
CNGB3	54714	broad.mit.edu	37	8	87641203	87641203	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:87641203A>T	uc003ydx.2	-	12	1470	c.1424T>A	c.(1423-1425)GTG>GAG	p.V475E	CNGB3_uc010maj.2_Missense_Mutation_p.V337E	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	475	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						TCGCTTTTGCACAAGTTTAGG	0.433			NA											31	205					0	0	0.008361	0	0
CNGB3	54714	broad.mit.edu	37	8	87656858	87656858	+	Silent	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:87656858A>G	uc003ydx.2	-	9	1093	c.1047T>C	c.(1045-1047)TAT>TAC	p.Y349Y	CNGB3_uc010maj.2_Silent_p.Y211Y	NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	349	Extracellular (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						ACCTGTAGATATATGCTTTGT	0.353			NA											9	19					0	0	0.008291	0	0
SLC26A7	115111	broad.mit.edu	37	8	92352651	92352651	+	Missense_Mutation	SNP	C	C	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:92352651C>G	uc003yex.2	+	9	1176	c.898C>G	c.(898-900)CCC>GCC	p.P300A	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.P300A|SLC26A7_uc003yfa.2_Missense_Mutation_p.P300A	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	300	Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			ACCTAGAGCTCCCCCGATGAA	0.453			NA											33	108					0	0	0.005524	0	0
RUNX1T1	862	broad.mit.edu	37	8	92998350	92998350	+	Splice_Site	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:92998350A>T	uc003yfd.2	-	8	1363	c.1279_splice	c.e8+1	p.D427_splice	RUNX1T1_uc003yfc.1_Splice_Site_p.D400_splice|RUNX1T1_uc003yfe.1_Splice_Site_p.D390_splice|RUNX1T1_uc010mao.2_Splice_Site_p.D400_splice|RUNX1T1_uc011lgi.1_Splice_Site_p.D438_splice|RUNX1T1_uc010man.1_Splice_Site|RUNX1T1_uc003yfb.1_Splice_Site_p.D390_splice	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1						generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			AAGAAAAGTTACCTAGTGCAA	0.423			NA											7	188					0	0	0.00308	0	0
RUNX1T1	862	broad.mit.edu	37	8	93023247	93023247	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:93023247C>A	uc003yfd.2	-	4	625	c.541G>T	c.(541-543)GTC>TTC	p.V181F	RUNX1T1_uc003yfc.1_Missense_Mutation_p.V154F|RUNX1T1_uc003yfe.1_Missense_Mutation_p.V144F|RUNX1T1_uc010mao.2_Missense_Mutation_p.V154F|RUNX1T1_uc011lgi.1_Missense_Mutation_p.V192F|RUNX1T1_uc003yfh.1_Missense_Mutation_p.V144F|RUNX1T1_uc003yfb.1_Missense_Mutation_p.V144F|RUNX1T1_uc003yff.1_Missense_Mutation_p.V144F|RUNX1T1_uc003yfg.1_Missense_Mutation_p.V144F	NM_175634	NP_783552	Q06455	MTG8_HUMAN	acute myelogenous leukemia 1 translocation 1	181	TAFH.				generation of precursor metabolites and energy	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(9)|large_intestine(3)|breast(2)|central_nervous_system(1)|pancreas(1)	16			BRCA - Breast invasive adenocarcinoma(11;0.0141)			AATGGGATGACAAAAGGTCTC	0.333			NA											40	54					8.48111e-28	1.49819e-27	0.00361	1	0
SPAG1	6674	broad.mit.edu	37	8	101174537	101174537	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:101174537G>T	uc003yjh.1	+	2	115	c.29G>T	c.(28-30)TGG>TTG	p.W10L	SPAG1_uc003yjg.1_Missense_Mutation_p.W10L|SPAG1_uc003yji.1_Missense_Mutation_p.W10L	NM_172218	NP_757367	Q07617	SPAG1_HUMAN	sperm associated antigen 1	10					single fertilization	cytoplasm	GTP binding|hydrolase activity			ovary(2)|central_nervous_system(1)	3	all_cancers(14;2.35e-05)|all_epithelial(15;5.2e-08)|Lung NSC(17;0.000283)|all_lung(17;0.000823)	Breast(495;0.195)	Epithelial(11;1.12e-09)|all cancers(13;1.26e-07)|OV - Ovarian serous cystadenocarcinoma(57;4.37e-05)|STAD - Stomach adenocarcinoma(118;0.0525)	KIRC - Kidney renal clear cell carcinoma(542;0.00178)|READ - Rectum adenocarcinoma(644;0.236)		CCATCATTGTGGGGCTTTGGA	0.279			NA											16	22					9.16793e-09	1.27109e-08	0.00499	1	0
ZFPM2	23414	broad.mit.edu	37	8	106431453	106431453	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:106431453C>A	uc003ymd.2	+	2	145	c.122C>A	c.(121-123)CCA>CAA	p.P41Q		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	41					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GGAGACTTTCCATTGGAGGAA	0.418			NA											8	116					1.06961e-07	1.42071e-07	0.00308	1	0
CSMD3	114788	broad.mit.edu	37	8	113585804	113585804	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:113585804G>T	uc003ynu.2	-	24	4127	c.3968C>A	c.(3967-3969)ACT>AAT	p.T1323N	CSMD3_uc003yns.2_Missense_Mutation_p.T595N|CSMD3_uc003ynt.2_Missense_Mutation_p.T1283N|CSMD3_uc011lhx.1_Missense_Mutation_p.T1219N	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1323	Extracellular (Potential).|CUB 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TTGATTTGAAGTACTACTAAG	0.353			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			47	77					6.7651e-33	1.21145e-32	0.00361	1	0
CSMD3	114788	broad.mit.edu	37	8	113668420	113668420	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:113668420G>C	uc003ynu.2	-	18	3126	c.2967C>G	c.(2965-2967)AAC>AAG	p.N989K	CSMD3_uc003yns.2_Missense_Mutation_p.N261K|CSMD3_uc003ynt.2_Missense_Mutation_p.N949K|CSMD3_uc011lhx.1_Missense_Mutation_p.N885K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	989	Extracellular (Potential).|CUB 5.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TGGAACGACTGTTGTCTGTTG	0.328			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			3	98					0	0	0.004672	0	0
TG	7038	broad.mit.edu	37	8	133898772	133898772	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:133898772G>A	uc003ytw.2	+	9	1196	c.1155G>A	c.(1153-1155)CAG>CAA	p.Q385Q		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	385					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		ACTTCAGCCAGCACGACCTGT	0.532			NA											15	211					0	0	0.004007	0	0
ST3GAL1	6482	broad.mit.edu	37	8	134472025	134472025	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:134472025C>A	uc003yuk.2	-	10	1834	c.1005G>T	c.(1003-1005)CGG>CGT	p.R335R	ST3GAL1_uc003yum.2_Silent_p.R335R	NM_173344	NP_775479	Q11201	SIA4A_HUMAN	ST3 beta-galactoside alpha-2,3-sialyltransferase	335	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,3-sialyltransferase activity				0	all_epithelial(106;1.53e-23)|Lung NSC(106;3.15e-07)|all_lung(105;1.26e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.00721)			CCTTGAAGATCCGGATTTTAT	0.572			NA											9	119					0.000274275	0.000304945	0.004482	1	0
TRAPPC9	83696	broad.mit.edu	37	8	141262976	141262976	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:141262976C>A	uc003yvj.2	-	16	2465	c.2331G>T	c.(2329-2331)CAG>CAT	p.Q777H	TRAPPC9_uc003yvh.2_Missense_Mutation_p.Q875H|TRAPPC9_uc010mel.1_Missense_Mutation_p.Q198H|TRAPPC9_uc003yvi.1_Missense_Mutation_p.Q768H	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	777					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GCAAAGGGAACTGGGCAAGGG	0.473			NA											38	61					4.34086e-07	5.65775e-07	0.005524	1	0
DMRT1	1761	broad.mit.edu	37	9	968030	968030	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:968030C>T	uc003zgv.2	+	5	1162	c.1013C>T	c.(1012-1014)TCG>TTG	p.S338L		NM_021951	NP_068770	Q9Y5R6	DMRT1_HUMAN	doublesex and mab-3 related transcription factor	338	Pro/Ser-rich.				cell differentiation|male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		all_lung(10;2.66e-10)|Lung NSC(10;2.82e-10)|Breast(48;0.232)		Lung(218;0.037)		GTTTCCCTCTCGAGCAGCTCT	0.443			NA											9	61					0	0	0.004482	0	0
DMRT3	58524	broad.mit.edu	37	9	990652	990652	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:990652G>T	uc003zgw.1	+	2	1104	c.1066G>T	c.(1066-1068)GGG>TGG	p.G356W		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	356					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		TCCCTTGGCTGGGCCTCTGCA	0.577			NA											12	67					1.5842e-08	2.17619e-08	0.001855	1	0
FREM1	158326	broad.mit.edu	37	9	14823206	14823206	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:14823206C>A	uc003zlm.2	-	13	2879	c.2289G>T	c.(2287-2289)GGG>GGT	p.G763G	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	763	CSPG 5.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TAAAGCAGATCCCATGCAAAG	0.443			NA											43	81					1.57019e-19	2.67857e-19	0.007835	1	0
MLLT3	4300	broad.mit.edu	37	9	20413979	20413979	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:20413979C>A	uc003zoe.2	-	5	1124	c.865G>T	c.(865-867)GAT>TAT	p.D289Y	MLLT3_uc011lne.1_Missense_Mutation_p.D257Y|MLLT3_uc011lnf.1_Missense_Mutation_p.D286Y|MLLT3_uc003zof.2_Missense_Mutation_p.D90Y	NM_004529	NP_004520	P42568	AF9_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	289					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(2)|ovary(1)	3				GBM - Glioblastoma multiforme(3;4.35e-105)|Lung(42;3.48e-06)|LUSC - Lung squamous cell carcinoma(42;7.92e-05)		TCTTCAGAATCTGAAATGGGC	0.418			NA	T	MLL	ALL								64	181					2.19297e-23	3.80309e-23	0.00361	1	0
IFNB1	3456	broad.mit.edu	37	9	21077762	21077762	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:21077762A>G	uc003zok.2	-	1	182	c.107T>C	c.(106-108)TTT>TCT	p.F36S		NM_002176	NP_002167	P01574	IFNB_HUMAN	interferon, beta 1, fibroblast precursor	36					activation of caspase activity|B cell proliferation|blood coagulation|cellular response to exogenous dsRNA|defense response to virus|induction of apoptosis|natural killer cell activation|negative regulation of cell proliferation|negative regulation of T cell differentiation|negative regulation of T-helper 2 cell cytokine production|negative regulation of viral genome replication|negative regulation of viral transcription|negative regulation of virion penetration into host cell|positive regulation of innate immune response|positive regulation of transcription from RNA polymerase II promoter|regulation of MHC class I biosynthetic process|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding|transcription corepressor activity			ovary(1)|breast(1)|kidney(1)	3				GBM - Glioblastoma multiforme(5;7.45e-142)|Lung(24;2.42e-17)|LUSC - Lung squamous cell carcinoma(38;7.17e-11)	Interferon beta-1a(DB00060)|Interferon beta-1b(DB00068)	CTGACACTGAAAATTGCTGCT	0.463			NA											6	62					0	0	0.001168	0	0
IFNA7	3444	broad.mit.edu	37	9	21202097	21202097	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:21202097C>A	uc003zop.1	-	1	108	c.68G>T	c.(67-69)GGC>GTC	p.G23V	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	23					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CAGATCACAGCCCAGAGAGCA	0.502			NA											9	114					1.12685e-05	1.36319e-05	0.004482	1	0
ZCCHC7	84186	broad.mit.edu	37	9	37126589	37126589	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:37126589A>G	uc003zzq.2	+	2	433	c.260A>G	c.(259-261)GAT>GGT	p.D87G	ZCCHC7_uc011lqh.1_Intron|ZCCHC7_uc011lqi.1_Missense_Mutation_p.D86G|ZCCHC7_uc010mlt.2_Missense_Mutation_p.D86G|ZCCHC7_uc003zzs.1_Missense_Mutation_p.D86G	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	87							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		CAGCTGTCAGATGGGTCAGAG	0.398			NA											30	153					0	0	0.010818	0	0
FRMPD1	22844	broad.mit.edu	37	9	37746358	37746358	+	Silent	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:37746358A>C	uc004aag.1	+	16	4373	c.4329A>C	c.(4327-4329)GGA>GGC	p.G1443G	FRMPD1_uc004aah.1_Silent_p.G1443G	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1443						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GGGGGGTTGGAAACAAACATC	0.567			NA											8	7					0	0	0.00308	0	0
PGM5	5239	broad.mit.edu	37	9	71006459	71006459	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:71006459C>A	uc004agr.2	+	5	936	c.707C>A	c.(706-708)CCT>CAT	p.P236H		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	236					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						GTTATGGGACCTTATGTGAGA	0.423			NA											9	44					4.68919e-08	6.30865e-08	0.008291	1	0
RORB	6096	broad.mit.edu	37	9	77275585	77275585	+	Silent	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:77275585C>T	uc004aji.2	+	5	772	c.723C>T	c.(721-723)ACC>ACT	p.T241T	RORB_uc004ajh.2_Silent_p.T230T	NM_006914	NP_008845	Q92753	RORB_HUMAN	RAR-related orphan receptor B	241	Ligand-binding (Potential).				eye photoreceptor cell development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(2)|lung(1)|skin(1)	4						GTCAATACACCATGGAAGAGC	0.403			NA											8	78					0	0	0.004482	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608624	84608624	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:84608624G>T	uc004amn.2	+	4	3286	c.3239G>T	c.(3238-3240)CGG>CTG	p.R1080L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1080						integral to membrane					0						GAAAGTGTCCGGACAACAGAG	0.493			NA											8	81					0.000157383	0.000178208	0.00308	1	0
NTRK2	4915	broad.mit.edu	37	9	87366928	87366928	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:87366928G>A	uc004aoa.1	+	14	2262	c.1324G>A	c.(1324-1326)GTG>ATG	p.V442M	NTRK2_uc004anv.1_Missense_Mutation_p.V429M|NTRK2_uc004any.1_Missense_Mutation_p.V442M|NTRK2_uc004anz.1_Missense_Mutation_p.V442M|NTRK2_uc011lsz.1_Missense_Mutation_p.V442M|NTRK2_uc011lta.1_Missense_Mutation_p.V442M|NTRK2_uc004aob.1_Missense_Mutation_p.V442M|NTRK2_uc011ltb.1_Missense_Mutation_p.V286M|NTRK2_uc004aoc.2_Translation_Start_Site	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	442	Helical; (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						GATTGCGTCTGTGGTGGGATT	0.388			NA								TSP Lung(25;0.17)			5	72					0	0	0.001168	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88925683	88925683	+	Missense_Mutation	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:88925683T>C	uc004aoq.2	-	18	3531	c.3316A>G	c.(3316-3318)ATT>GTT	p.I1106V	ZCCHC6_uc010mqe.2_Missense_Mutation_p.I44V|ZCCHC6_uc011ltf.1_Intron|ZCCHC6_uc004aor.2_RNA|ZCCHC6_uc004aos.2_RNA|ZCCHC6_uc004aot.2_Missense_Mutation_p.I870V|ZCCHC6_uc004aou.2_Missense_Mutation_p.I1106V	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6	1106					RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						AACTTCACAATTGGCACCTTT	0.343			NA											5	36					0	0	0.001168	0	0
SECISBP2	79048	broad.mit.edu	37	9	91943726	91943726	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:91943726G>T	uc004aqj.1	+	5	806	c.726G>T	c.(724-726)TGG>TGT	p.W242C	SECISBP2_uc010mqn.1_Missense_Mutation_p.W242C|SECISBP2_uc004aqi.1_Missense_Mutation_p.W169C|SECISBP2_uc011ltk.1_Missense_Mutation_p.W241C|SECISBP2_uc004aqk.1_Missense_Mutation_p.W169C|SECISBP2_uc010mqo.1_5'UTR|SECISBP2_uc011ltl.1_Missense_Mutation_p.W174C	NM_024077	NP_076982	Q96T21	SEBP2_HUMAN	SECIS binding protein 2	242					translation	nucleus	mRNA 3'-UTR binding			ovary(2)|skin(1)	3						AACCCAAGTGGGGACCTGTCC	0.438			NA											11	38					2.27111e-07	2.98996e-07	0.001368	1	0
COL15A1	1306	broad.mit.edu	37	9	101807016	101807016	+	Splice_Site	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:101807016G>T	uc004azb.1	+	26	2850	c.2644_splice	c.e26-1	p.G882_splice		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor						angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TCCTGTTTTAGGGTGAACCTG	0.463			NA											4	43					1.23904e-05	1.48856e-05	0.000602	1	0
OR13D1	286365	broad.mit.edu	37	9	107457137	107457137	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:107457137C>A	uc011lvs.1	+	1	435	c.435C>A	c.(433-435)GTC>GTA	p.V145V		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	145	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTGAGTGTGTCCTCCTGGCTG	0.488			NA											11	131					1.08611e-07	1.43895e-07	0.010729	1	0
SLC44A1	23446	broad.mit.edu	37	9	108126844	108126844	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:108126844G>T	uc004bcn.2	+	10	1317	c.1096G>T	c.(1096-1098)GTT>TTT	p.V366F	SLC44A1_uc010mtk.1_Missense_Mutation_p.V366F|SLC44A1_uc004bco.1_Missense_Mutation_p.V158F	NM_080546	NP_536856	Q8WWI5	CTL1_HUMAN	CDW92 antigen	366	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane|plasma membrane	choline transmembrane transporter activity			breast(3)|ovary(1)	4					Choline(DB00122)	AGGCAGTCCTGTTCAGAATGA	0.438			NA											10	175					4.68919e-08	6.30865e-08	0.008291	1	0
SLC46A2	57864	broad.mit.edu	37	9	115648836	115648836	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:115648836A>G	uc004bgk.2	-	3	1506	c.1274T>C	c.(1273-1275)TTG>TCG	p.L425S		NM_033051	NP_149040	Q9BY10	TSCOT_HUMAN	solute carrier family 46, member 2	425	Helical; Name=11; (Potential).					integral to membrane|plasma membrane	symporter activity			central_nervous_system(1)	1						CTTGTTGTACAAGGTGGATGT	0.527			NA											22	75					0	0	0.003954	0	0
TLR4	7099	broad.mit.edu	37	9	120474743	120474743	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:120474743C>A	uc004bjz.2	+	3	628	c.337C>A	c.(337-339)CCC>ACC	p.P113T	TLR4_uc004bka.2_Missense_Mutation_p.P73T|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	113	LRR 3.|Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity	p.P113T(1)		lung(10)|ovary(4)|breast(1)|skin(1)	16						GACAGGAAACCCCATCCAGAG	0.443			NA											5	61					0.000602214	0.000659027	0.000602	1	0
NDUFA8	4702	broad.mit.edu	37	9	124910549	124910550	+	Nonsense_Mutation	DNP	TT	TT	AG			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	TT	TT	-	-	TT	TT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:124910549_124910550TT>AG	uc004blv.2	-	3	364_365	c.222_223AA>CT	c.(220-225)ATAAAA>ATCTAA	p.K75*		NM_014222	NP_055037	P51970	NDUA8_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	75	CHCH 2.				mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial intermembrane space|mitochondrial respiratory chain complex I	NADH dehydrogenase (ubiquinone) activity			breast(1)	1					NADH(DB00157)	CAGTGACGTTTTATCTGCCTGG	0.396			NA											7	80					0	0	0.004672	0	0
OR1L6	392390	broad.mit.edu	37	9	125512544	125512544	+	Missense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:125512544C>T	uc011lzc.1	+	1	526	c.526C>T	c.(526-528)CGG>TGG	p.R176W		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	176	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATGAAACCACGGCATTGCCT	0.532			NA											5	185					0	0	0.001855	0	0
TTC16	158248	broad.mit.edu	37	9	130479240	130479240	+	Missense_Mutation	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:130479240T>A	uc004brq.1	+	2	203	c.136T>A	c.(136-138)TGT>AGT	p.C46S	PTRH1_uc004brm.2_5'Flank|PTRH1_uc004bro.2_5'Flank|PTRH1_uc010mxm.2_Splice_Site|PTRH1_uc011mah.1_Splice_Site|TTC16_uc011mai.1_Missense_Mutation_p.C46S|TTC16_uc004brr.1_5'Flank	NM_144965	NP_659402	Q8NEE8	TTC16_HUMAN	tetratricopeptide repeat domain 16	46							binding				0						CCAAAGCATCTGTGATGTAAA	0.488			NA											5	63					0	0	0.000602	0	0
NCS1	23413	broad.mit.edu	37	9	132982036	132982036	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:132982036G>T	uc004bzi.2	+	4	347	c.261G>T	c.(259-261)CAG>CAT	p.Q87H	NCS1_uc010myz.1_Missense_Mutation_p.Q69H	NM_014286	NP_055101	P62166	NCS1_HUMAN	frequenin homolog isoform 1	87	EF-hand 2.				negative regulation of calcium ion transport via voltage-gated calcium channel activity|regulation of neuron projection development	cell junction|Golgi cisterna membrane|perinuclear region of cytoplasm|postsynaptic density|postsynaptic membrane	calcium ion binding|protein binding				0						AGTTCATCCAGGCGCTGTCGG	0.637	Melanoma(30;182 1162 22581 33240)		NA											9	47					0.000274275	0.000304945	0.004482	1	0
GTF3C4	9329	broad.mit.edu	37	9	135553434	135553434	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:135553434A>C	uc010mzv.2	+	2	686	c.428A>C	c.(427-429)CAG>CCG	p.Q143P	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	143					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		ACGGTCAGTCAGACTTTCATG	0.478	Pancreas(142;417 1875 11086 31973 47667)		NA											6	70					0	0	0.001168	0	0
FCN2	2220	broad.mit.edu	37	9	137772709	137772709	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr9:137772709C>A	uc004cfg.1	+	1	52	c.42C>A	c.(40-42)ACC>ACA	p.T14T	FCN2_uc004cfh.1_Silent_p.T14T	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	14					complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GCGCTGCCACCCTGCTGCTCT	0.617			NA											5	24					1.23904e-05	1.48856e-05	0.000602	1	0
MXRA5	25878	broad.mit.edu	37	X	3235434	3235434	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:3235434G>T	uc004crg.3	-	6	6445	c.6288C>A	c.(6286-6288)CAC>CAA	p.H2096Q		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2096	Ig-like C2-type 5.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ACAAGTTCCCGTGGAGGAACT	0.642			NA											9	4					1.58986e-06	2.00704e-06	0.008291	1	0
ASB9	140462	broad.mit.edu	37	X	15266879	15266879	+	Silent	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:15266879G>A	uc004cwl.2	-	6	994	c.747C>T	c.(745-747)TTC>TTT	p.F249F	ASB9_uc004cwk.2_Silent_p.F249F|ASB9_uc004cwm.2_Silent_p.F239F|ASB9_uc010ner.2_Silent_p.F249F|ASB9_uc004cwn.2_Silent_p.F220F	NM_001031739	NP_001026909	Q96DX5	ASB9_HUMAN	ankyrin repeat and SOCS box-containing 9 isoform	249	SOCS box.				intracellular signal transduction						0	Hepatocellular(33;0.183)					CTCTCTCCAAGAAGAGCTGGG	0.542			NA											10	41					0	0	0.008291	0	0
PDHA1	5160	broad.mit.edu	37	X	19375768	19375768	+	Splice_Site	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:19375768A>T	uc004czg.3	+	9	977	c.832_splice	c.e9-2	p.G278_splice	PDHA1_uc004czh.3_Splice_Site_p.G313_splice|PDHA1_uc011mjc.1_Splice_Site_p.G282_splice|PDHA1_uc011mjd.1_Splice_Site_p.G244_splice|PDHA1_uc010nfk.2_Intron|PDHA1_uc010nfl.2_Splice_Site_p.G69_splice	NM_000284	NP_000275	P08559	ODPA_HUMAN	pyruvate dehydrogenase E1 alpha 1 precursor						glycolysis|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	protein binding|pyruvate dehydrogenase (acetyl-transferring) activity			ovary(1)	1	Hepatocellular(33;0.183)				NADH(DB00157)	GTTCTGTTTTAGGGGCCCATC	0.537			NA											74	79					0	0	0.00361	0	0
PHEX	5251	broad.mit.edu	37	X	22065243	22065243	+	Nonsense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:22065243G>A	uc004dah.2	+	3	466	c.263G>A	c.(262-264)TGG>TAG	p.W88*	PHEX_uc011mjr.1_Nonsense_Mutation_p.W88*|PHEX_uc011mjs.1_5'UTR	NM_000444	NP_000435	P78562	PHEX_HUMAN	phosphate-regulating neutral endopeptidase	88	Extracellular (Potential).				biomineral tissue development|cell-cell signaling|protein modification process|proteolysis|skeletal system development	integral to plasma membrane	aminopeptidase activity|metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3						TGTGATGGCTGGATAAGCAAT	0.398			NA											7	56					0	0	0.001984	0	0
DCAF8L1	139425	broad.mit.edu	37	X	27997831	27997831	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:27997831C>A	uc004dbx.1	-	1	1736	c.1621G>T	c.(1621-1623)GAC>TAC	p.D541Y		NM_001017930	NP_001017930	A6NGE4	DC8L1_HUMAN	DDB1 and CUL4 associated factor 8-like 1	541										ovary(3)|skin(1)	4						TCAAACGAGTCCGTATAGTTC	0.488			NA											45	45					6.57855e-14	1.0359e-13	0.009718	1	0
CXorf21	80231	broad.mit.edu	37	X	30577698	30577698	+	Nonsense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:30577698C>A	uc004dcg.1	-	3	1051	c.775G>T	c.(775-777)GAG>TAG	p.E259*		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	259										ovary(1)	1						AGATTCTTCTCTCTAGACACT	0.423			NA											27	26					2.79863e-10	4.05239e-10	0.004656	1	0
FTHL17	53940	broad.mit.edu	37	X	31089806	31089806	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:31089806G>T	uc004dcl.1	-	1	368	c.265C>A	c.(265-267)CCA>ACA	p.P89T		NM_031894	NP_114100	Q9BXU8	FHL17_HUMAN	ferritin, heavy polypeptide-like 17	89	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport		ferric iron binding|oxidoreductase activity				0						TGGCACTCTGGCTTCCTGATA	0.607			NA											4	52					0.00909568	0.00961122	0.009096	1	0
FAM47C	442444	broad.mit.edu	37	X	37027667	37027667	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:37027667C>A	uc004ddl.1	+	1	1198	c.1184C>A	c.(1183-1185)CCC>CAC	p.P395H		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	395										ovary(3)	3						CCAGAGACCCCCAAGAATGGA	0.617			NA											27	29					5.61819e-17	9.31014e-17	0.005443	1	0
DUSP21	63904	broad.mit.edu	37	X	44703540	44703540	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:44703540C>A	uc004dgd.2	+	1	292	c.162C>A	c.(160-162)GCC>GCA	p.A54A		NM_022076	NP_071359	Q9H596	DUS21_HUMAN	dual specificity phosphatase 21	54	Tyrosine-protein phosphatase.|Sufficient for mitochondrial localization (By similarity).					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			large_intestine(1)|lung(1)	2						TTGTCAATGCCTCGGTGGAAG	0.507			NA											34	41					3.76114e-14	5.95846e-14	0.004289	1	0
PHF16	9767	broad.mit.edu	37	X	46845161	46845161	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:46845161A>G	uc004dgx.2	+	3	145	c.94A>G	c.(94-96)AAA>GAA	p.K32E	PHF16_uc004dgy.2_Missense_Mutation_p.K32E	NM_001077445	NP_001070913	Q92613	JADE3_HUMAN	PHD finger protein 16	32					histone H3 acetylation|histone H4-K12 acetylation|histone H4-K5 acetylation|histone H4-K8 acetylation	histone acetyltransferase complex	zinc ion binding				0						GATCAAGTCAAAAATTCCAAA	0.274			NA											13	23					0	0	0.004007	0	0
RBM10	8241	broad.mit.edu	37	X	47034444	47034444	+	Nonsense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:47034444G>T	uc004dhf.2	+	6	908	c.529G>T	c.(529-531)GAG>TAG	p.E177*	RBM10_uc004dhe.1_Intron|RBM10_uc004dhg.2_Nonsense_Mutation_p.E100*|RBM10_uc004dhh.2_Nonsense_Mutation_p.E177*|RBM10_uc010nhq.2_Nonsense_Mutation_p.E100*|RBM10_uc004dhi.2_Nonsense_Mutation_p.E242*	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	177	RRM 1.				mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						CGCCTTCGTCGAGTTTAGTCA	0.552	Melanoma(171;120 2705 19495 39241)		NA											21	21					5.26018e-13	8.09974e-13	0.012319	1	0
RIBC1	158787	broad.mit.edu	37	X	53453249	53453249	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:53453249G>C	uc004dsk.2	+	3	178	c.25G>C	c.(25-27)GAT>CAT	p.D9H	RIBC1_uc004dsj.1_Missense_Mutation_p.D9H|RIBC1_uc011mog.1_Missense_Mutation_p.D9H	NM_001031745	NP_001026915	Q8N443	RIBC1_HUMAN	RIB43A domain with coiled-coils 1 isoform 1	9											0						ACAGTCAACAGATACCAAGGA	0.502			NA											3	35					0	0	0.004672	0	0
FAM120C	54954	broad.mit.edu	37	X	54159204	54159204	+	Silent	SNP	T	T	C	rs45611732	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:54159204T>C	uc004dsz.3	-	9	2066	c.1983A>G	c.(1981-1983)GTA>GTG	p.V661V	FAM120C_uc011moh.1_Silent_p.V661V	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	661										ovary(1)|central_nervous_system(1)	2						GAACTCCATATACATATTGAC	0.478			NA											6	25					0	0	0.001984	0	0
MTMR8	55613	broad.mit.edu	37	X	63557210	63557210	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:63557210G>C	uc004dvs.2	-	9	1107	c.1039C>G	c.(1039-1041)CAA>GAA	p.Q347E	MTMR8_uc011mou.1_Missense_Mutation_p.Q347E|MTMR8_uc004dvt.1_Missense_Mutation_p.Q347E	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	347	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						GAGCAGACTTGTGCTGTGCGG	0.443			NA											5	12					0	0	0.001168	0	0
BRWD3	254065	broad.mit.edu	37	X	79973080	79973080	+	Silent	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:79973080C>A	uc004edt.2	-	19	2486	c.2223G>T	c.(2221-2223)GGG>GGT	p.G741G	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Silent_p.G337G|BRWD3_uc004edp.2_Silent_p.G570G|BRWD3_uc004edq.2_Silent_p.G337G|BRWD3_uc010nmj.1_Silent_p.G337G|BRWD3_uc004edr.2_Silent_p.G411G|BRWD3_uc004eds.2_Silent_p.G337G|BRWD3_uc004edu.2_Silent_p.G411G|BRWD3_uc004edv.2_Silent_p.G337G|BRWD3_uc004edw.2_Silent_p.G337G|BRWD3_uc004edx.2_Silent_p.G337G|BRWD3_uc004edy.2_Silent_p.G337G|BRWD3_uc004edz.2_Silent_p.G411G|BRWD3_uc004eea.2_Silent_p.G411G|BRWD3_uc004eeb.2_Silent_p.G337G	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	741										ovary(4)	4						ACCTACTAACCCCATTATTTA	0.378			NA											8	115					0.00448238	0.00478487	0.004482	1	0
POU3F4	5456	broad.mit.edu	37	X	82764135	82764135	+	Missense_Mutation	SNP	G	G	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:82764135G>C	uc004eeg.2	+	1	867	c.803G>C	c.(802-804)AGC>ACC	p.S268T		NM_000307	NP_000298	P49335	PO3F4_HUMAN	POU domain, class 3, transcription factor 4	268					sensory perception of sound	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGCCCGACCAGCATTGACAAG	0.572			NA											7	22					0	0	0.001984	0	0
SATL1	340562	broad.mit.edu	37	X	84362524	84362524	+	Missense_Mutation	SNP	G	G	T	rs146269642		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:84362524G>T	uc011mqx.1	-	1	1451	c.1451C>A	c.(1450-1452)CCG>CAG	p.P484Q	SATL1_uc004een.2_Missense_Mutation_p.P484Q	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	297	Gln-rich.						N-acetyltransferase activity			breast(2)	2						ACTCGGCCCCGGTTCCCATAT	0.577			NA											11	60					0.000673444	0.000734666	0.008291	1	0
PCDH11X	27328	broad.mit.edu	37	X	91090850	91090850	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:91090850C>A	uc004efk.1	+	1	1192	c.347C>A	c.(346-348)CCG>CAG	p.P116Q	PCDH11X_uc004efl.1_Missense_Mutation_p.P116Q|PCDH11X_uc004efo.1_Missense_Mutation_p.P116Q|PCDH11X_uc010nmv.1_Missense_Mutation_p.P116Q|PCDH11X_uc004efm.1_Missense_Mutation_p.P116Q|PCDH11X_uc004efn.1_Missense_Mutation_p.P116Q|PCDH11X_uc004efh.1_Missense_Mutation_p.P116Q|PCDH11X_uc004efj.1_Missense_Mutation_p.P116Q	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	116	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						GCCATTTTGCCGGATGAAATA	0.393	NSCLC(38;925 1092 2571 38200 45895)		NA											29	65					5.84002e-05	6.80467e-05	0.012213	1	0
CXorf41	139212	broad.mit.edu	37	X	106459949	106459949	+	Missense_Mutation	SNP	C	C	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:106459949C>A	uc004enc.2	+	3	264	c.202C>A	c.(202-204)CCA>ACA	p.P68T	CXorf41_uc004end.2_Missense_Mutation_p.P68T	NM_173494	NP_775765	Q9NQM4	CX041_HUMAN	hypothetical protein LOC139212	68											0						GAATATTGGACCACCCCAAAT	0.338			NA											5	30					4.096e-09	5.76311e-09	0.001168	1	0
RGAG1	57529	broad.mit.edu	37	X	109694214	109694214	+	Silent	SNP	T	T	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:109694214T>A	uc004eor.1	+	3	615	c.369T>A	c.(367-369)TCT>TCA	p.S123S	RGAG1_uc011msr.1_Silent_p.S123S	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	123										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						CCTTAGATTCTGGAACATTGT	0.522			NA											43	59					0	0	0.011902	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698882	111698882	+	Missense_Mutation	SNP	A	A	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:111698882A>C	uc004epo.1	+	3	1367	c.926A>C	c.(925-927)CAC>CCC	p.H309P		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	309							nucleic acid binding|zinc ion binding			ovary(1)	1						AACACAGCTCACCAGTAAGAG	0.438			NA											6	28					0	0	0.001984	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698884	111698884	+	Nonsense_Mutation	SNP	C	C	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:111698884C>T	uc004epo.1	+	3	1369	c.928C>T	c.(928-930)CAG>TAG	p.Q310*		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	310							nucleic acid binding|zinc ion binding			ovary(1)	1						CACAGCTCACCAGTAAGAGGA	0.438			NA											5	29					0	0	0.001168	0	0
LONRF3	79836	broad.mit.edu	37	X	118145781	118145781	+	Silent	SNP	T	T	C			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:118145781T>C	uc004eqw.2	+	8	1687	c.1656T>C	c.(1654-1656)CTT>CTC	p.L552L	LONRF3_uc004eqx.2_Silent_p.L511L|LONRF3_uc004eqy.2_RNA|LONRF3_uc004eqz.2_Silent_p.L296L	NM_001031855	NP_001027026	Q496Y0	LONF3_HUMAN	LON peptidase N-terminal domain and ring finger	552	Lon.				proteolysis		ATP-dependent peptidase activity|protein binding|zinc ion binding			breast(1)|central_nervous_system(1)	2						CTGACAGCCTTAATAAGAATG	0.448			NA											14	96					0	0	0.003163	0	0
CT45A5	441521	broad.mit.edu	37	X	134947984	134947984	+	Missense_Mutation	SNP	G	G	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:134947984G>T	uc004eze.2	-	3	586	c.341C>A	c.(340-342)TCC>TAC	p.S114Y	CT45A5_uc011mvu.1_Missense_Mutation_p.S114Y	NM_001007551	NP_001007552	Q6NSH3	CT455_HUMAN	cancer/testis antigen family 45, member A5	114											0						TTTGGGAGAGGAGGCTATTCC	0.428			NA											10	153					3.07112e-06	3.81242e-06	0.010729	1	0
BRS3	680	broad.mit.edu	37	X	135572294	135572294	+	Missense_Mutation	SNP	A	A	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:135572294A>G	uc004ezv.1	+	2	586	c.437A>G	c.(436-438)TAC>TGC	p.Y146C		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	146	Cytoplasmic (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					GTTTCTAGATACAAGGCAGTT	0.323			NA											14	34					0	0	0.003163	0	0
GPR101	83550	broad.mit.edu	37	X	136113649	136113649	+	Missense_Mutation	SNP	A	A	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:136113649A>T	uc011mwh.1	-	1	185	c.185T>A	c.(184-186)CTG>CAG	p.L62Q		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	62	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CACCTGCAGCAGCTGCGGCTT	0.607			NA											12	25					0	0	0.004007	0	0
CXorf66	347487	broad.mit.edu	37	X	139038425	139038425	+	Missense_Mutation	SNP	G	G	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:139038425G>A	uc004fbb.2	-	3	738	c.716C>T	c.(715-717)CCT>CTT	p.P239L		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	239	Cytoplasmic (Potential).					integral to membrane					0						ATGTTTGGGAGGCTTAGCCAA	0.433			NA											12	110					0	0	0.001368	0	0
GABRA3	2556	broad.mit.edu	37	X	151336822	151336822	+	Missense_Mutation	SNP	T	T	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:151336822T>G	uc010ntk.1	-	10	1597	c.1357A>C	c.(1357-1359)AGC>CGC	p.S453R		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	453	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TCAACCTTGCTGACACTGTTG	0.512	NSCLC(142;2578 2613 10251 16743)		NA											11	76					0	0	0.008291	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935332	151935332	+	Missense_Mutation	SNP	C	C	T	rs35983118	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chrX:151935332C>T	uc004fgp.2	-	3	1044	c.835G>A	c.(835-837)GTT>ATT	p.V279I		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	279	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CTGGTTTCAACGAGGGCCCTT	0.532			NA											9	137					0	0	0.004482	0	0
FLG	2312	broad.mit.edu	37	1	152280610	152280611	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:152280610_152280611insA	uc001ezu.1	-	3	6787_6788	c.6751_6752insT	c.(6751-6753)GGAfs	p.G2251fs		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2251	Ser-rich.|Filaggrin 13.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TTCTGAGTGTCCCTCACTGTCA	0.589			NA							Ichthyosis				47	435	---	---	---	---	NA	NA	NA	NA	NA
SPTA1	6708	broad.mit.edu	37	1	158618322	158618322	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr1:158618322delC	uc001fst.1	-	26	3890	c.3691delG	c.(3691-3693)GACfs	p.D1231fs		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1231	Spectrin 12.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					GGTACGAGGTCCCTTTCAAAG	0.502			NA											39	105	---	---	---	---	NA	NA	NA	NA	NA
PRMT8	56341	broad.mit.edu	37	12	3701483	3701483	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:3701483delG	uc001qmf.2	+	9	1433	c.1066delG	c.(1066-1068)GGGfs	p.G356fs	PRMT8_uc009zed.2_Frame_Shift_Del_p.G347fs|PRMT8_uc001qmg.2_Frame_Shift_Del_p.G170fs|PRMT8_uc001qmh.2_RNA	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	356					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			GGAAATCTACGGGACCATATC	0.557			NA											47	97	---	---	---	---	NA	NA	NA	NA	NA
AKAP3	10566	broad.mit.edu	37	12	4737560	4737560	+	Frame_Shift_Del	DEL	T	T	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:4737560delT	uc001qnb.3	-	4	737	c.508delA	c.(508-510)AGCfs	p.S170fs		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	170					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						TTACTGAGGCTTTTGGTGGGT	0.498			NA											68	198	---	---	---	---	NA	NA	NA	NA	NA
GPR133	283383	broad.mit.edu	37	12	131466440	131466448	+	In_Frame_Del	DEL	TCTTTTTTC	TCTTTTTTC	-	rs74744169	byFrequency	TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	TCTTTTTTC	TCTTTTTTC	-	-	TCTTTTTTC	TCTTTTTTC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr12:131466440_131466448delTCTTTTTTC	uc001uit.3	+	5	881_889	c.322_330delTCTTTTTTC	c.(322-330)TCTTTTTTCdel	p.SFF108del	GPR133_uc010tbm.1_In_Frame_Del_p.SFF140del	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	108_110	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		GGTCACGTTTTCTTTTTTCTGGAAGACAC	0.474			NA											51	113	---	---	---	---	NA	NA	NA	NA	NA
MIA2	117153	broad.mit.edu	37	14	39716921	39716921	+	Frame_Shift_Del	DEL	T	T	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr14:39716921delT	uc001wux.2	+	4	1337	c.1143delT	c.(1141-1143)GGTfs	p.G381fs	MIA2_uc010amy.1_Frame_Shift_Del_p.G312fs	NM_054024	NP_473365	Q96PC5	MIA2_HUMAN	melanoma inhibitory activity 2	381						extracellular region				ovary(1)|breast(1)	2	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0216)		TTGATTTTGGTTTTGCTATAC	0.358			NA											7	78	---	---	---	---	NA	NA	NA	NA	NA
ITGAL	3683	broad.mit.edu	37	16	30486668	30486668	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr16:30486668delG	uc002dyi.3	+	3	382	c.206delG	c.(205-207)AGCfs	p.S69fs	ITGAL_uc010veu.1_RNA|ITGAL_uc002dyj.3_Frame_Shift_Del_p.S69fs|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	69	FG-GAP 1.|Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	AGCACAGGAAGCCTCTATCAG	0.592	NSCLC(110;1462 1641 3311 33990 49495)		NA											14	150	---	---	---	---	NA	NA	NA	NA	NA
TOM1L1	10040	broad.mit.edu	37	17	52990037	52990038	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:52990037_52990038delTG	uc002iud.2	+	4	408_409	c.233_234delTG	c.(232-234)ATGfs	p.M78fs	TOM1L1_uc002iub.2_Frame_Shift_Del_p.M43fs|TOM1L1_uc002iuc.2_Frame_Shift_Del_p.M78fs|TOM1L1_uc010dca.1_Frame_Shift_Del_p.M78fs|TOM1L1_uc010wnb.1_Intron|TOM1L1_uc010wnc.1_Frame_Shift_Del_p.M1fs|TOM1L1_uc010dbz.2_Frame_Shift_Del_p.M1fs|TOM1L1_uc010wnd.1_Frame_Shift_Del_p.M1fs|TOM1L1_uc010dcb.1_5'Flank	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	78	VHS.				intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						CTTATTGACATGTGTGTGCAGA	0.337			NA											15	71	---	---	---	---	NA	NA	NA	NA	NA
MPO	4353	broad.mit.edu	37	17	56350859	56350859	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:56350859delC	uc002ivu.1	-	9	1714	c.1537delG	c.(1537-1539)GACfs	p.D513fs		NM_000250	NP_000241	P05164	PERM_HUMAN	myeloperoxidase	513					anti-apoptosis|hydrogen peroxide catabolic process|low-density lipoprotein particle remodeling	extracellular space|lysosome|nucleus|stored secretory granule	chromatin binding|heme binding|heparin binding|peroxidase activity			ovary(2)|large_intestine(1)|pancreas(1)	4					Cefdinir(DB00535)	TACCGATTGTCCAGGCGGAAC	0.592			NA											29	164	---	---	---	---	NA	NA	NA	NA	NA
ABCA5	23461	broad.mit.edu	37	17	67303002	67303002	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr17:67303002delG	uc002jif.2	-	5	1870	c.652delC	c.(652-654)CGAfs	p.R218fs	ABCA5_uc002jig.2_Frame_Shift_Del_p.R218fs|ABCA5_uc002jih.2_Frame_Shift_Del_p.R218fs|ABCA5_uc010dfe.2_Frame_Shift_Del_p.R218fs	NM_018672	NP_061142	Q8WWZ7	ABCA5_HUMAN	ATP-binding cassette, sub-family A , member 5	218					cholesterol efflux|high-density lipoprotein particle remodeling|negative regulation of macrophage derived foam cell differentiation	Golgi membrane|integral to membrane|late endosome membrane|lysosomal membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;3.72e-11)					ATTACTCCTCGGGGAAAGGTA	0.323			NA											21	98	---	---	---	---	NA	NA	NA	NA	NA
MUC16	94025	broad.mit.edu	37	19	9071588	9071589	+	Frame_Shift_Ins	INS	-	-	A			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:9071588_9071589insA	uc002mkp.2	-	3	16061_16062	c.15857_15858insT	c.(15856-15858)TTGfs	p.L5286fs		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5288	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGATGTGTCCAAGGGAAGGGT	0.525			NA											20	85	---	---	---	---	NA	NA	NA	NA	NA
ZNF420	147923	broad.mit.edu	37	19	37618899	37618907	+	In_Frame_Del	DEL	GAATGTAAG	GAATGTAAG	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GAATGTAAG	GAATGTAAG	-	-	GAATGTAAG	GAATGTAAG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:37618899_37618907delGAATGTAAG	uc002ofl.2	+	5	1221_1229	c.1006_1014delGAATGTAAG	c.(1006-1014)GAATGTAAGdel	p.ECK336del		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	336_338	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AAAACCATATGAATGTAAGGAATGTGGAA	0.407			NA											7	103	---	---	---	---	NA	NA	NA	NA	NA
ZNF226	7769	broad.mit.edu	37	19	44680896	44680897	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	AG	AG	-	-	AG	AG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr19:44680896_44680897delAG	uc002oyp.2	+	6	1625_1626	c.1481_1482delAG	c.(1480-1482)CAGfs	p.Q494fs	ZNF226_uc002oyq.2_Frame_Shift_Del_p.Q377fs|ZNF226_uc002oyr.2_Frame_Shift_Del_p.Q377fs|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Frame_Shift_Del_p.Q494fs|ZNF226_uc002oyt.2_Frame_Shift_Del_p.Q494fs	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	494	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				CAAGCCCATCAGAGAGTCCACA	0.46	Pancreas(115;581 1665 13228 19278 50070)		NA											9	114	---	---	---	---	NA	NA	NA	NA	NA
KIDINS220	57498	broad.mit.edu	37	2	8928836	8928836	+	Frame_Shift_Del	DEL	T	T	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:8928836delT	uc002qzc.2	-	15	1910	c.1728delA	c.(1726-1728)AAAfs	p.K576fs	KIDINS220_uc010yiv.1_Frame_Shift_Del_p.K342fs|KIDINS220_uc002qzd.2_Frame_Shift_Del_p.K534fs|KIDINS220_uc010yiw.1_Frame_Shift_Del_p.K577fs	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	576	Cytoplasmic (Potential).|KAP NTPase.				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CAAACATCAATTTAAGGAGGA	0.423			NA											12	92	---	---	---	---	NA	NA	NA	NA	NA
KIF3C	3797	broad.mit.edu	37	2	26203366	26203368	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GCT	GCT	-	-	GCT	GCT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:26203366_26203368delGCT	uc002rgu.2	-	1	2076_2078	c.1419_1421delAGC	c.(1417-1422)GCAGCC>GCC	p.473_474AA>A	KIF3C_uc010eyj.1_RNA|KIF3C_uc010ykr.1_In_Frame_Del_p.473_474AA>A	NM_002254	NP_002245	O14782	KIF3C_HUMAN	kinesin family member 3C	473_474	Potential.				blood coagulation|microtubule-based movement	cytosol|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ATCCTGGATGGCTGCCTTCTCCT	0.611			NA											8	110	---	---	---	---	NA	NA	NA	NA	NA
KIAA1841	84542	broad.mit.edu	37	2	61304276	61304276	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:61304276delG	uc002saw.3	+	6	956	c.653delG	c.(652-654)TGTfs	p.C218fs	KIAA1841_uc002sax.3_Frame_Shift_Del_p.C72fs|KIAA1841_uc002say.2_Frame_Shift_Del_p.C218fs|KIAA1841_uc002sav.3_Frame_Shift_Del_p.C218fs	NM_001129993	NP_001123465	Q6NSI8	K1841_HUMAN	KIAA1841 protein isoform a	218											0			Epithelial(17;0.193)			AATAAAGATTGTGAGATGCCC	0.378			NA											29	105	---	---	---	---	NA	NA	NA	NA	NA
RAB11FIP5	26056	broad.mit.edu	37	2	73315269	73315269	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:73315269delC	uc002siu.3	-	3	1718	c.1477delG	c.(1477-1479)GCCfs	p.A493fs	RAB11FIP5_uc002sit.3_Frame_Shift_Del_p.A415fs	NM_015470	NP_056285	Q9BXF6	RFIP5_HUMAN	RAB11 family interacting protein 5 (class I)	493					protein transport	mitochondrial outer membrane|recycling endosome membrane	gamma-tubulin binding				0						TGTGGGGAGGCCCCCAGGATG	0.607			NA											39	113	---	---	---	---	NA	NA	NA	NA	NA
POLR1B	84172	broad.mit.edu	37	2	113305054	113305055	+	Frame_Shift_Ins	INS	-	-	G			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:113305054_113305055insG	uc002thw.2	+	3	982_983	c.402_403insG	c.(400-405)CTTGGCfs	p.L134fs	POLR1B_uc010fkn.2_Frame_Shift_Ins_p.L78fs|POLR1B_uc002thx.2_5'UTR|POLR1B_uc010fko.2_Frame_Shift_Ins_p.L134fs|POLR1B_uc010fkp.2_Intron|POLR1B_uc010yxn.1_Frame_Shift_Ins_p.L172fs|POLR1B_uc002thy.2_5'UTR|POLR1B_uc010yxo.1_Intron	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	134_135					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						AGCAGTTTCTTGGCTATGTTCC	0.426	Ovarian(16;256 576 9537 23969 41147)		NA											7	108	---	---	---	---	NA	NA	NA	NA	NA
UGGT1	56886	broad.mit.edu	37	2	128936041	128936041	+	Splice_Site	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:128936041delG	uc002tps.2	+	34	3892	c.3714_splice	c.e34-1	p.W1238_splice	UGGT1_uc002tpr.2_Splice_Site_p.W1214_splice	NM_020120	NP_064505	Q9NYU2	UGGG1_HUMAN	UDP-glucose ceramide glucosyltransferase-like 1						'de novo' posttranslational protein folding|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen|ER-Golgi intermediate compartment	UDP-glucose:glycoprotein glucosyltransferase activity|unfolded protein binding			ovary(1)	1						TATTGTTATAGGGGCTTTACA	0.398			NA											19	125	---	---	---	---	NA	NA	NA	NA	NA
TTN	7273	broad.mit.edu	37	2	179528792	179528792	+	Frame_Shift_Del	DEL	T	T	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:179528792delT	uc010zfk.1	-	14	1300	c.752delA	c.(751-753)AAGfs	p.K251fs	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11463							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGACACTTTCTTTTCAGGGAT	0.383			NA											9	157	---	---	---	---	NA	NA	NA	NA	NA
CPS1	1373	broad.mit.edu	37	2	211457611	211457611	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr2:211457611delG	uc002vee.3	+	11	1227	c.1095delG	c.(1093-1095)ATGfs	p.M365fs	CPS1_uc010fur.2_Frame_Shift_Del_p.M371fs|CPS1_uc010fus.2_5'Flank	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	365	Glutamine amidotransferase type-1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AGGGGATTATGCATGAGAGCA	0.423			NA											27	125	---	---	---	---	NA	NA	NA	NA	NA
TRMT2A	27037	broad.mit.edu	37	22	20104493	20104511	+	Splice_Site	DEL	GGCCTGTCACAAGGGAAGT	GGCCTGTCACAAGGGAAGT	-	rs11544956		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GGCCTGTCACAAGGGAAGT	GGCCTGTCACAAGGGAAGT	-	-	GGCCTGTCACAAGGGAAGT	GGCCTGTCACAAGGGAAGT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr22:20104493_20104511delGGCCTGTCACAAGGGAAGT	uc002zrk.1	-	2	150	c.-65_splice	c.e2-1		TRMT2A_uc002zrl.1_5'UTR|TRMT2A_uc002zrm.1_5'UTR|TRMT2A_uc002zrn.1_5'UTR|TRMT2A_uc011ahk.1_5'UTR|RANBP1_uc011ahl.1_5'Flank|RANBP1_uc002zro.1_5'Flank|RANBP1_uc002zrp.2_5'Flank	NM_182984	NP_892029	Q8IZ69	TRM2A_HUMAN	HpaII tiny fragments locus 9C						RNA processing		nucleotide binding|RNA binding|RNA methyltransferase activity			breast(1)	1						CCTCGTCCTGGGCCTGTCACAAGGGAAGTGGCCTGTCAC	0.699			NA											3	4	---	---	---	---	NA	NA	NA	NA	NA
KDR	3791	broad.mit.edu	37	4	55948769	55948769	+	Frame_Shift_Del	DEL	C	C	-	rs67220958		TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr4:55948769delC	uc003has.2	-	28	3998	c.3696delG	c.(3694-3696)CGGfs	p.R1232fs	KDR_uc003hat.1_Frame_Shift_Del_p.R1232fs	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	1232	Cytoplasmic (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CACTCACAGGCCGGCTCTTTC	0.358			NA	Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			20	99	---	---	---	---	NA	NA	NA	NA	NA
ZDHHC11	79844	broad.mit.edu	37	5	814880	814881	+	Frame_Shift_Del	DEL	GT	GT	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	GT	GT	-	-	GT	GT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:814880_814881delGT	uc011cma.1	-	11	1560_1561	c.1176_1177delAC	c.(1174-1179)ACACTTfs	p.T392fs	ZDHHC11_uc010itc.2_RNA|ZDHHC11_uc003jbj.2_RNA	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	392_393						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			ACTTACCCAAGTGTAGATATAC	0.376			NA											28	69	---	---	---	---	NA	NA	NA	NA	NA
CDH10	1008	broad.mit.edu	37	5	24487964	24487964	+	Frame_Shift_Del	DEL	G	G	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr5:24487964delG	uc003jgr.1	-	12	2507	c.2175delC	c.(2173-2175)CCCfs	p.P725fs	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	725	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GGGGTGCGGTGGGGTCAAGAT	0.458			NA								HNSCC(23;0.051)			13	153	---	---	---	---	NA	NA	NA	NA	NA
ARID1B	57492	broad.mit.edu	37	6	157528151	157528152	+	Frame_Shift_Ins	INS	-	-	T			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr6:157528151_157528152insT	uc003qqn.2	+	20	5974_5975	c.5822_5823insT	c.(5821-5823)CCTfs	p.P1941fs	ARID1B_uc003qqo.2_Frame_Shift_Ins_p.P1901fs|ARID1B_uc003qqp.2_Frame_Shift_Ins_p.P1888fs	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	1946					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		TCATTCGTGCCTGGCAATGATG	0.55			NA											31	184	---	---	---	---	NA	NA	NA	NA	NA
XKR6	286046	broad.mit.edu	37	8	10755642	10755642	+	Frame_Shift_Del	DEL	C	C	-			TCGA-05-4424-01A-22D-1855-08	TCGA-05-4424-10A-01D-1855-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	fc500ff5-24c8-4965-94da-b4afafafe2dd	e785fabf-7b0f-49cd-a423-0c6372147f9b	g.chr8:10755642delC	uc003wtk.1	-	3	1773	c.1746delG	c.(1744-1746)GGGfs	p.G582fs		NM_173683	NP_775954	Q5GH73	XKR6_HUMAN	XK, Kell blood group complex subunit-related	582						integral to membrane				ovary(1)|skin(1)	2				Lung(29;0.0407)|COAD - Colon adenocarcinoma(149;0.0555)		TAATGAGGGGCCCTTCTGGGA	0.512			NA											20	77	---	---	---	---	NA	NA	NA	NA	NA
