Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MTOR	2475	broad.mit.edu	37	1	11308080	11308080	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:11308080C>A	uc001asd.2	-	7	1033	c.912G>T	c.(910-912)ATG>ATT	p.M304I		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	304					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						TTCCGAAGCCCATGAGATCTT	0.488			NA											16	122					1.5739e-10	2.58705e-10	0.004007	1	0
PRAMEF2	65122	broad.mit.edu	37	1	12918928	12918928	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:12918928G>C	uc001aum.1	+	2	151	c.64G>C	c.(64-66)GCC>CCC	p.A22P		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	22											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GAGAGACCAGGCCTTGTCCAT	0.567			NA											11	86					0	0	0.010729	0	0
PADI2	11240	broad.mit.edu	37	1	17410262	17410262	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:17410262C>A	uc001baf.2	-	9	1091	c.1009G>T	c.(1009-1011)GTC>TTC	p.V337F	PADI2_uc010ocm.1_Missense_Mutation_p.V221F|PADI2_uc001bag.1_Missense_Mutation_p.V337F	NM_007365	NP_031391	Q9Y2J8	PADI2_HUMAN	peptidyl arginine deiminase, type II	337					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(3)|pancreas(1)|central_nervous_system(1)|skin(1)	6		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000422)|Renal(390;0.000518)|all_lung(284;0.000546)|Ovarian(437;0.00671)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;1.49e-05)|COAD - Colon adenocarcinoma(227;1.54e-05)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)	L-Citrulline(DB00155)	TGGAAGCAGACCTTCAGCTCA	0.532			NA											10	80					7.03913e-09	1.08665e-08	0.013537	1	0
UBR4	23352	broad.mit.edu	37	1	19449430	19449430	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:19449430C>A	uc001bbi.2	-	66	9717	c.9713G>T	c.(9712-9714)CGT>CTT	p.R3238L	UBR4_uc001bbk.1_Missense_Mutation_p.R885L	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	3238					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		CTTGATCCCACGCACGTGAGA	0.547			NA											13	54					0.00316338	0.00354788	0.003163	1	0
HSPG2	3339	broad.mit.edu	37	1	22222444	22222444	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:22222444C>A	uc001bfj.2	-	3	255	c.215G>T	c.(214-216)GGG>GTG	p.G72V	HSPG2_uc009vqd.2_Missense_Mutation_p.G72V|HSPG2_uc009vqe.1_Missense_Mutation_p.G27V	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	72					angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	GCCCAGGTCCCCACTGCCCAG	0.433			NA											6	34					0.00198382	0.00223731	0.001984	1	0
PTAFR	5724	broad.mit.edu	37	1	28477276	28477276	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:28477276G>T	uc001bpl.2	-	2	384	c.257C>A	c.(256-258)CCC>CAC	p.P86H	PTAFR_uc001bpm.3_Missense_Mutation_p.P86H|PTAFR_uc009vte.2_Missense_Mutation_p.P86H	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	86	Extracellular (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		CAGGAATTTGGGGAGTATCCA	0.507			NA											4	43					1.024e-07	1.51731e-07	0.000602	1	0
PUM1	9698	broad.mit.edu	37	1	31426788	31426788	+	Silent	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:31426788A>G	uc001bsi.1	-	15	2477	c.2364T>C	c.(2362-2364)GCT>GCC	p.A788A	PUM1_uc001bsf.1_Silent_p.A454A|PUM1_uc001bsg.1_Silent_p.A522A|PUM1_uc001bsh.1_Silent_p.A788A|PUM1_uc001bsj.1_Silent_p.A762A|PUM1_uc010oga.1_Silent_p.A644A|PUM1_uc001bsk.1_Silent_p.A824A|PUM1_uc010ogb.1_Silent_p.A729A	NM_014676	NP_055491	Q14671	PUM1_HUMAN	pumilio 1 isoform 2	788	Ser-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport|regulation of translation	cytosol	RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Colorectal(325;0.0211)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0381)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0232)|READ - Rectum adenocarcinoma(331;0.0681)		CAGCGCCTGGAGCAGCAGAGA	0.507			NA											15	107					0	0	0.003163	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33959006	33959006	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:33959006C>T	uc001bxj.3	+	7	1831	c.1664C>T	c.(1663-1665)CCA>CTA	p.P555L	ZSCAN20_uc009vui.2_Missense_Mutation_p.P554L	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	555					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AGCAGCCACCCACCAGGGACA	0.602			NA											4	69					0	0	0.009096	0	0
SLFNL1	200172	broad.mit.edu	37	1	41486066	41486066	+	Silent	SNP	C	C	G	rs148645268		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:41486066C>G	uc001cgm.1	-	2	487	c.267G>C	c.(265-267)CCG>CCC	p.P89P	SLFNL1_uc009vwf.1_Silent_p.P89P|SLFNL1_uc001cgn.1_Silent_p.P89P|SLFNL1_uc009vwg.1_Silent_p.P89P	NM_144990	NP_659427	Q499Z3	SLNL1_HUMAN	schlafen-like 1	89							ATP binding			skin(1)	1	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Breast(333;0.1)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0393)				AGGCCTTCCGCGGCCGCCTCA	0.672			NA											8	55					0	0	0.00308	0	0
INSL5	10022	broad.mit.edu	37	1	67263820	67263820	+	Missense_Mutation	SNP	C	C	A	rs144286383		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:67263820C>A	uc001dcw.2	-	2	319	c.284G>T	c.(283-285)GGT>GTT	p.G95V		NM_005478	NP_005469	Q9Y5Q6	INSL5_HUMAN	insulin-like 5 precursor	95						extracellular region	hormone activity				0						CATCTGTCCACCCCAAAGACG	0.478			NA											11	76					5.16669e-11	8.70404e-11	0.010729	1	0
LRRIQ3	127255	broad.mit.edu	37	1	74507107	74507107	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:74507107A>T	uc001dfy.3	-	7	1700	c.1508T>A	c.(1507-1509)CTG>CAG	p.L503Q	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	503										ovary(2)	2						TTTTAGAAACAGAGCTTTTCT	0.333			NA											20	163					0	0	0.008871	0	0
RABGGTB	5876	broad.mit.edu	37	1	76253183	76253183	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:76253183G>T	uc001dgy.1	+	2	76	c.5G>T	c.(4-6)GGC>GTC	p.G2V	RABGGTB_uc009wbt.1_RNA|RABGGTB_uc001dha.1_5'UTR|SNORD45A_uc009wbu.1_5'Flank|SNORD45B_uc009wbv.1_5'Flank	NM_004582	NP_004573	P53611	PGTB2_HUMAN	RAB geranylgeranyltransferase, beta subunit	2					protein modification process|visual perception		metal ion binding|protein binding|Rab geranylgeranyltransferase activity			ovary(1)	1						TTTTGAAAGGGCACTCCACAG	0.378			NA											25	69					6.32553e-13	1.16735e-12	0.004656	1	0
CLCA1	1179	broad.mit.edu	37	1	86951077	86951077	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:86951077C>A	uc001dlt.2	+	6	916	c.787C>A	c.(787-789)CAA>AAA	p.Q263K	CLCA1_uc001dls.1_Missense_Mutation_p.Q202K	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	263					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		TCCAAACAAGCAAAATCAAAA	0.373			NA											17	70					1.56452e-12	2.78595e-12	0.007413	1	0
LPPR4	9890	broad.mit.edu	37	1	99771542	99771542	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:99771542C>T	uc001dse.2	+	7	1374	c.1268C>T	c.(1267-1269)CCA>CTA	p.P423L	LPPR4_uc010oue.1_Missense_Mutation_p.P365L	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	423							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		GCCAATACCCCATCTGTAGAA	0.483			NA											6	43					0	0	0.001984	0	0
KCNA2	3737	broad.mit.edu	37	1	111146095	111146095	+	Missense_Mutation	SNP	T	T	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:111146095T>G	uc001dzu.2	-	2	1806	c.1310A>C	c.(1309-1311)AAG>ACG	p.K437T	KCNA2_uc009wfv.1_Intron|KCNA2_uc009wfw.2_Missense_Mutation_p.K437T	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	437						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		GGATGGGATCTTTGGACAGCT	0.463	Pancreas(18;568 735 10587 23710 36357)		NA											27	106					0	0	0.00632	0	0
HIPK1	204851	broad.mit.edu	37	1	114505013	114505013	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:114505013G>C	uc001eem.2	+	9	2217	c.2056G>C	c.(2056-2058)GCA>CCA	p.A686P	HIPK1_uc001eel.2_Missense_Mutation_p.A686P|HIPK1_uc001een.2_Missense_Mutation_p.A686P|HIPK1_uc001eeo.2_Missense_Mutation_p.A312P|HIPK1_uc001eep.2_Missense_Mutation_p.A292P|HIPK1_uc001eeq.2_5'Flank	NM_198268	NP_938009	Q86Z02	HIPK1_HUMAN	homeodomain-interacting protein kinase 1 isoform	686					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(4)	4	Lung SC(450;0.184)	all_cancers(81;4.5e-08)|all_epithelial(167;1.09e-07)|all_lung(203;1.53e-05)|Lung NSC(69;2.76e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTACCCCAGGCACCAGCTGC	0.443			NA											13	48					0	0	0.013537	0	0
PIP5K1A	8394	broad.mit.edu	37	1	151219439	151219439	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:151219439C>T	uc001exj.2	+	15	2136	c.1684C>T	c.(1684-1686)CAT>TAT	p.H562Y	PIP5K1A_uc001exi.2_Missense_Mutation_p.H549Y|PIP5K1A_uc010pcu.1_Missense_Mutation_p.H522Y|PIP5K1A_uc001exk.2_Missense_Mutation_p.H500Y|PIP5K1A_uc010pcv.1_Silent_p.P226P	NM_001135638	NP_001129110	Q99755	PI51A_HUMAN	phosphatidylinositol-4-phosphate 5-kinase, type	562					phospholipid biosynthetic process|signal transduction	endomembrane system|Golgi stack|lamellipodium|nuclear speck	1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|kinase binding			ovary(1)|central_nervous_system(1)|skin(1)	3	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGAGTTCACCCATGTGAGTAT	0.408	Pancreas(80;36 1443 2325 16095 21302)		NA											17	98					0	0	0.007413	0	0
SPRR3	6707	broad.mit.edu	37	1	152975939	152975939	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:152975939A>T	uc001fax.3	+	3	593	c.443A>T	c.(442-444)AAG>ATG	p.K148M	SPRR3_uc001faz.3_Missense_Mutation_p.K148M|SPRR3_uc001fay.2_Missense_Mutation_p.K140M	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	148	14 X 8 AA approximate tandem repeats.|14.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			GGCTACACAAAGCTACCAGAG	0.517			NA											8	21					0	0	0.00308	0	0
OR10T2	128360	broad.mit.edu	37	1	158368884	158368884	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:158368884C>A	uc010pih.1	-	1	373	c.373G>T	c.(373-375)GTA>TTA	p.V125L		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	125	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAAATTGCTACATAGCGATCA	0.473			NA											25	93					5.45024e-15	1.04872e-14	0.00333	1	0
SPTA1	6708	broad.mit.edu	37	1	158592830	158592830	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:158592830C>A	uc001fst.1	-	43	6262	c.6063G>T	c.(6061-6063)CTG>CTT	p.L2021L		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2021	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCGAGGCTTCCAGCAACTGTT	0.468			NA											55	261					1.46156e-29	3.07457e-29	0.01441	1	0
PBX1	5087	broad.mit.edu	37	1	164789369	164789369	+	Missense_Mutation	SNP	T	T	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:164789369T>G	uc001gct.2	+	7	1316	c.1058T>G	c.(1057-1059)CTC>CGC	p.L353R	PBX1_uc010pku.1_Missense_Mutation_p.L353R|PBX1_uc010pkv.1_Missense_Mutation_p.L270R|PBX1_uc001gcs.2_Intron|PBX1_uc010pkw.1_Missense_Mutation_p.L243R	NM_002585	NP_002576	P40424	PBX1_HUMAN	pre-B-cell leukemia homeobox 1	353					negative regulation of sequence-specific DNA binding transcription factor activity|sex differentiation|steroid biosynthetic process	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription factor binding		EWSR1/PBX1(3)	soft_tissue(3)|lung(1)|skin(1)	5						GTGCAGTCACTCAATGGGGAT	0.488			NA	T	TCF3|EWSR1	pre B-ALL|myoepithelioma								6	76					0	0	0.001168	0	0
SELL	6402	broad.mit.edu	37	1	169670773	169670773	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:169670773G>A	uc001ggk.2	-	7	1207	c.1009C>T	c.(1009-1011)CCA>TCA	p.P337S	C1orf112_uc001ggj.2_Intron|SELL_uc010pls.1_Missense_Mutation_p.P290S|SELL_uc001ggl.1_Missense_Mutation_p.P350S	NM_000655	NP_000646	P14151	LYAM1_HUMAN	selectin L precursor	337	Helical; (Potential).				blood coagulation|cell adhesion|leukocyte migration|regulation of immune response	integral to plasma membrane	glycosphingolipid binding|heparin binding|protease binding|sugar binding				0	all_hematologic(923;0.208)					ACTGCCACTGGAATGAAGAGG	0.403			NA											4	11					0	0	0.009096	0	0
SLC9A11	284525	broad.mit.edu	37	1	173493226	173493226	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:173493226A>G	uc001giz.2	-	21	2945	c.2522T>C	c.(2521-2523)CTT>CCT	p.L841P	SLC9A11_uc009wwe.2_Missense_Mutation_p.L399P	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	841					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TAATTTTTTAAGAAGTACCTA	0.234			NA											11	55					0	0	0.001855	0	0
KIAA1614	57710	broad.mit.edu	37	1	180886014	180886014	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:180886014C>A	uc001gok.2	+	2	842	c.775C>A	c.(775-777)CTG>ATG	p.L259M		NM_020950	NP_066001	Q5VZ46	K1614_HUMAN	hypothetical protein LOC57710	259										ovary(3)|skin(1)	4						TAGCACATCCCTGACCTCCGA	0.582			NA											32	156					3.03874e-20	6.10757e-20	0.003271	1	0
DHX9	1660	broad.mit.edu	37	1	182827319	182827319	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:182827319C>T	uc001gpr.2	+	8	917	c.754C>T	c.(754-756)CAT>TAT	p.H252Y	DHX9_uc001gps.2_Missense_Mutation_p.H38Y	NM_001357	NP_001348	Q08211	DHX9_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 9	252	Interaction with BRCA1.|DRBM 2.				CRD-mediated mRNA stabilization|nuclear mRNA splicing, via spliceosome	centrosome|CRD-mediated mRNA stability complex|nucleolus|nucleoplasm|ribonucleoprotein complex	ATP binding|ATP-dependent DNA helicase activity|ATP-dependent RNA helicase activity|DNA binding|double-stranded RNA binding|protein binding			ovary(2)	2						ACAACTGTACCATCTTGGAGT	0.418	Colon(69;210 1162 3697 13559 39565)		NA											16	84					0	0	0.00499	0	0
ASPM	259266	broad.mit.edu	37	1	197112663	197112663	+	Missense_Mutation	SNP	G	G	A	rs140646088		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:197112663G>A	uc001gtu.2	-	3	976	c.719C>T	c.(718-720)TCT>TTT	p.S240F	ASPM_uc001gtv.2_Missense_Mutation_p.S240F|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	240					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TCGACGTACAGAGAGTGGCAA	0.363			NA											27	136					0	0	0.00632	0	0
KIF21B	23046	broad.mit.edu	37	1	200960046	200960046	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:200960046G>T	uc001gvs.1	-	18	3003	c.2686C>A	c.(2686-2688)CGA>AGA	p.R896R	KIF21B_uc001gvr.1_Silent_p.R896R|KIF21B_uc009wzl.1_Silent_p.R896R|KIF21B_uc010ppn.1_Silent_p.R896R	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	896					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CCACCTTACCGGGCAGGACGG	0.647			NA											12	44					2.80697e-09	4.40012e-09	0.010729	1	0
PRELP	5549	broad.mit.edu	37	1	203453067	203453067	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:203453067A>G	uc001gzs.2	+	2	955	c.755A>G	c.(754-756)AAC>AGC	p.N252S	PRELP_uc001gzt.2_Missense_Mutation_p.N252S	NM_002725	NP_002716	P51888	PRELP_HUMAN	proline arginine-rich end leucine-rich repeat	252	LRR 7.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent			ovary(1)|central_nervous_system(1)|pancreas(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.109)			CTGGACAGTAACAAGATTGAG	0.532			NA											18	106					0	0	0.008871	0	0
FAM71A	149647	broad.mit.edu	37	1	212798394	212798394	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:212798394G>A	uc001hjk.2	+	1	579	c.175G>A	c.(175-177)GTG>ATG	p.V59M	uc010pth.1_Intron	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	59										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		AAGGGGAGAAGTGATTGATGT	0.522			NA											14	69					0	0	0.00499	0	0
KCNK2	3776	broad.mit.edu	37	1	215408346	215408346	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:215408346G>T	uc001hkq.2	+	7	1308	c.1139G>T	c.(1138-1140)TGT>TTT	p.C380F	KCNK2_uc001hko.2_Missense_Mutation_p.C376F|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc001hkr.3_Missense_Mutation_p.C365F	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	380	Cytoplasmic (Potential).|Essential for chloroform and halothane sensitivity (By similarity).|Required for basal channel activity (By similarity).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	CTGACTCCTTGTAGGAGGACC	0.532			NA											7	42					8.12818e-05	9.76344e-05	0.001984	1	0
USH2A	7399	broad.mit.edu	37	1	216424377	216424377	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:216424377C>T	uc001hku.1	-	12	2422	c.2035G>A	c.(2035-2037)GGA>AGA	p.G679R	USH2A_uc001hkv.2_Missense_Mutation_p.G679R	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	679	Extracellular (Potential).|Laminin EGF-like 3.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGTAGAATCCATTCTGGCAC	0.438			NA								HNSCC(13;0.011)			11	51					0	0	0.008291	0	0
TGFB2	7042	broad.mit.edu	37	1	218607527	218607527	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:218607527A>T	uc001hlm.2	+	3	1267	c.614A>T	c.(613-615)GAT>GTT	p.D205V	TGFB2_uc001hln.2_Missense_Mutation_p.D233V|TGFB2_uc010pue.1_RNA|TGFB2_uc001hlo.2_RNA	NM_003238	NP_003229	P61812	TGFB2_HUMAN	transforming growth factor, beta 2 isoform 2	205					activation of protein kinase activity|angiogenesis|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cardioblast differentiation|catagen|cell cycle arrest|cell death|cell growth|cell-cell junction organization|cell-cell signaling|collagen fibril organization|dopamine biosynthetic process|embryonic digestive tract development|eye development|glial cell migration|hair follicle morphogenesis|hemopoiesis|menstrual cycle phase|negative regulation of alkaline phosphatase activity|negative regulation of cell growth|negative regulation of epithelial cell proliferation|negative regulation of immune response|negative regulation of macrophage cytokine production|neuron development|neutrophil chemotaxis|odontogenesis|pathway-restricted SMAD protein phosphorylation|platelet activation|platelet degranulation|positive regulation of cardioblast differentiation|positive regulation of catagen|positive regulation of cell adhesion mediated by integrin|positive regulation of cell cycle|positive regulation of cell division|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of epithelial cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of heart contraction|positive regulation of immune response|positive regulation of integrin biosynthetic process|positive regulation of neuron apoptosis|positive regulation of ossification|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein secretion|positive regulation of stress-activated MAPK cascade|regulation of transforming growth factor-beta2 production|response to hypoxia|response to progesterone stimulus|salivary gland morphogenesis|SMAD protein import into nucleus|somatic stem cell division|transforming growth factor beta receptor signaling pathway	axon|extracellular matrix|extracellular space|neuronal cell body|platelet alpha granule lumen	beta-amyloid binding|cytokine activity|growth factor activity|protein heterodimerization activity|protein homodimerization activity|receptor signaling protein serine/threonine kinase activity|type II transforming growth factor beta receptor binding				0				all cancers(67;0.0459)|OV - Ovarian serous cystadenocarcinoma(81;0.049)|GBM - Glioblastoma multiforme(131;0.0776)		GATGTAACTGATGCTGTTCAT	0.423			NA											27	125					0	0	0.003954	0	0
RAB4A	5867	broad.mit.edu	37	1	229438646	229438646	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:229438646G>T	uc001hth.2	+	7	787	c.579G>T	c.(577-579)CAG>CAT	p.Q193H	RAB4A_uc001hti.2_RNA|RAB4A_uc001htj.2_RNA|SPHAR_uc001htk.3_5'Flank	NM_004578	NP_004569	P20338	RAB4A_HUMAN	RAB4A, member RAS oncogene family	188							GDP binding|GTP binding|GTPase activity			ovary(1)	1	Breast(184;0.0858)|Ovarian(103;0.103)	Prostate(94;0.178)				CAGGTATTCAGTACGGAGATG	0.502	Esophageal Squamous(11;250 603 9619 16563)		NA											15	77					1.52009e-12	2.74292e-12	0.003163	1	0
LYST	1130	broad.mit.edu	37	1	235918893	235918893	+	Nonsense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:235918893T>A	uc001hxj.2	-	25	7289	c.7114A>T	c.(7114-7116)AAG>TAG	p.K2372*	LYST_uc009xga.1_5'Flank	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	2372					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			CCACGATTCTTCAGAAATTTA	0.308			NA							Chediak-Higashsyndrome				57	251					0	0	0.01441	0	0
OR2L3	391192	broad.mit.edu	37	1	248224588	248224588	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:248224588C>A	uc001idx.1	+	1	605	c.605C>A	c.(604-606)ACC>AAC	p.T202N	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			TTTTTGAGCACCACCATCTTT	0.488			NA											14	108					1.5842e-08	2.40893e-08	0.001855	1	0
OR2M7	391196	broad.mit.edu	37	1	248487473	248487473	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr1:248487473G>T	uc010pzk.1	-	1	398	c.398C>A	c.(397-399)ACC>AAC	p.T133N		NM_001004691	NP_001004691	Q8NG81	OR2M7_HUMAN	olfactory receptor, family 2, subfamily M,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATGAGATTGGTGTATCTTAG	0.433			NA											36	178					3.76114e-14	7.10242e-14	0.004289	1	0
TUBB8	347688	broad.mit.edu	37	10	93408	93408	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:93408G>T	uc001ifi.2	-	4	924	c.924C>A	c.(922-924)GGC>GGA	p.G308G	TUBB8_uc009xhe.2_Silent_p.G271G|TUBB8_uc010pzs.1_Silent_p.G236G	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	308					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		TTAGGTAGCGGCCGTGACGGG	0.552	Pancreas(192;2041 3010 9013 18103)		NA											31	94					6.68952e-21	1.35122e-20	0.013114	1	0
ALOX5	240	broad.mit.edu	37	10	45877968	45877968	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:45877968G>C	uc001jce.2	+	2	287	c.188G>C	c.(187-189)GGC>GCC	p.G63A	ALOX5_uc009xmt.2_Missense_Mutation_p.G63A|ALOX5_uc010qfg.1_Missense_Mutation_p.G63A	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	63	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	GAGGAACTGGGCGAGATCCAG	0.527			NA											7	27					0	0	0.00308	0	0
NRG3	10718	broad.mit.edu	37	10	84745264	84745264	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:84745264C>A	uc001kco.2	+	9	2021	c.1994C>A	c.(1993-1995)ACA>AAA	p.T665K	NRG3_uc010qlz.1_Missense_Mutation_p.T664K|NRG3_uc001kcp.2_Missense_Mutation_p.T468K|NRG3_uc001kcq.2_Missense_Mutation_p.T315K|NRG3_uc001kcr.2_Missense_Mutation_p.T339K	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	689	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		AGCGAAAACACAGCCTTTCTC	0.488			NA											8	47					0.000157383	0.000186835	0.00308	1	0
BMPR1A	657	broad.mit.edu	37	10	88681386	88681386	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:88681386A>G	uc001kdy.2	+	11	1824	c.1276A>G	c.(1276-1278)ATC>GTC	p.I426V	BMPR1A_uc001kdz.2_5'Flank	NM_004329	NP_004320	P36894	BMR1A_HUMAN	bone morphogenetic protein receptor, type IA	426	Cytoplasmic (Potential).|Protein kinase.				BMP signaling pathway|immune response|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of SMAD protein import into nucleus|transforming growth factor beta receptor signaling pathway	integral to membrane|plasma membrane	ATP binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta receptor activity			lung(3)|large_intestine(1)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	8						CCAGCCCTACATCATGGCTGA	0.488	Ovarian(190;603 2086 22044 30335 47971)		NA	Mis|N|F			gastrointestinal polyps			Hereditary_Mixed_Polyposis_syndrome_type_2|Juvenile_Polyposis				19	120					0	0	0.010504	0	0
FAS	355	broad.mit.edu	37	10	90768652	90768652	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:90768652A>T	uc001kfr.2	+	4	687	c.341A>T	c.(340-342)GAA>GTA	p.E114V	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_Missense_Mutation_p.E114V|FAS_uc001kft.2_Missense_Mutation_p.E114V|FAS_uc010qnb.1_Intron|FAS_uc010qnc.1_Intron|FAS_uc001kfw.2_Intron|FAS_uc010qnd.1_Intron|FAS_uc010qne.1_Intron|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	114	Extracellular (Potential).|TNFR-Cys 2.				activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		CTAGGCTTAGAAGTGGAAATA	0.408			NA							Autoimmune_Lymphoproliferative_syndrome_type_I				57	340					0	0	0.01441	0	0
ENTPD1	953	broad.mit.edu	37	10	97583120	97583120	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:97583120A>T	uc001klh.3	+	2	467	c.143A>T	c.(142-144)AAG>ATG	p.K48M	ENTPD1_uc001kle.1_Missense_Mutation_p.K55M|ENTPD1_uc001kli.3_Missense_Mutation_p.K55M|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.K60M|ENTPD1_uc010qok.1_Intron|ENTPD1_uc010qol.1_Intron|ENTPD1_uc010qom.1_Missense_Mutation_p.K48M|ENTPD1_uc010qon.1_Translation_Start_Site|ENTPD1_uc009xva.2_Translation_Start_Site|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	48	Extracellular (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		GAAAACGTTAAGGTAAGTCAA	0.458			NA											11	56					0	0	0.010729	0	0
SLIT1	6585	broad.mit.edu	37	10	98778813	98778813	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:98778813G>T	uc001kmw.2	-	27	3050	c.2798C>A	c.(2797-2799)CCG>CAG	p.P933Q		NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	933	EGF-like 1.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GTTCTGGCACGGACTGGACAA	0.463			NA											5	21					1.23904e-05	1.59193e-05	0.000602	1	0
SLIT1	6585	broad.mit.edu	37	10	98799743	98799743	+	Splice_Site	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:98799743A>T	uc001kmw.2	-	21	2549	c.2297_splice	c.e21+1	p.L766_splice	SLIT1_uc009xvh.1_Splice_Site_p.L776_splice	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor						axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		TGAGCTACTCACAGTTCTGTG	0.642			NA											8	43					0	0	0.006214	0	0
RRP12	23223	broad.mit.edu	37	10	99144970	99144970	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:99144970C>A	uc001knf.2	-	10	1300	c.1161G>T	c.(1159-1161)CTG>CTT	p.L387L	RRP12_uc009xvm.2_Silent_p.L105L|RRP12_uc010qou.1_Silent_p.L326L|RRP12_uc009xvn.2_Silent_p.L287L	NM_015179	NP_055994	Q5JTH9	RRP12_HUMAN	ribosomal RNA processing 12 homolog isoform 1	387						integral to membrane|nuclear membrane|nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3		Colorectal(252;0.162)		Epithelial(162;2.72e-09)|all cancers(201;1.76e-07)		GCCAGGCTAGCAGGGGTTGTA	0.537			NA											18	97					3.62473e-10	5.91021e-10	0.012319	1	0
COL17A1	1308	broad.mit.edu	37	10	105794442	105794442	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:105794442G>T	uc001kxr.2	-	51	3872	c.3703C>A	c.(3703-3705)CTG>ATG	p.L1235M	COL17A1_uc001kxq.2_5'Flank	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	1235	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TAGGTTGCCAGGGCTCCTGAG	0.652			NA											6	16					5.9392e-07	8.4018e-07	0.001168	1	0
C10orf79	80217	broad.mit.edu	37	10	105952008	105952008	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:105952008A>G	uc001kxw.2	-	12	1611	c.1495T>C	c.(1495-1497)TTT>CTT	p.F499L	C10orf79_uc001kxx.3_Missense_Mutation_p.F500L	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	499	WD 8.										0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		TTGATAATAAAGACTTTTCCT	0.318			NA											10	84					0	0	0.004007	0	0
SORCS1	114815	broad.mit.edu	37	10	108448049	108448049	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:108448049G>T	uc001kym.2	-	10	1469	c.1461C>A	c.(1459-1461)AAC>AAA	p.N487K	SORCS1_uc001kyl.2_Missense_Mutation_p.N487K|SORCS1_uc009xxs.2_Missense_Mutation_p.N487K|SORCS1_uc001kyn.1_Missense_Mutation_p.N487K|SORCS1_uc001kyo.2_Missense_Mutation_p.N487K	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	487	Lumenal (Potential).			N -> Y (in Ref. 1; AAL56667).		integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		TCTTCACTTGGTTGTCAATCT	0.463			NA											10	88					9.70103e-10	1.55677e-09	0.008291	1	0
NRAP	4892	broad.mit.edu	37	10	115383307	115383307	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:115383307T>C	uc001laj.2	-	23	2602	c.2438A>G	c.(2437-2439)AAG>AGG	p.K813R	NRAP_uc009xyb.2_Intron|NRAP_uc001lak.2_Missense_Mutation_p.K778R|NRAP_uc001lal.3_Missense_Mutation_p.K813R	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	813	Nebulin 20.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CAGGtccctcttggctttggc	0.358			NA											12	73					0	0	0.013537	0	0
TRUB1	142940	broad.mit.edu	37	10	116698036	116698036	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:116698036G>T	uc001lcd.2	+	1	85	c.24G>T	c.(22-24)GTG>GTT	p.V8V	TRUB1_uc010qsl.1_Intron	NM_139169	NP_631908	Q8WWH5	TRUB1_HUMAN	TruB pseudouridine (psi) synthase homolog 1	8					pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding				0		Colorectal(252;0.09)|Breast(234;0.174)|Lung NSC(174;0.245)		Epithelial(162;0.00879)|all cancers(201;0.0243)		AGGCGGCGGTGGTGTCTTCGC	0.587			NA											3	27					6.4e-05	7.87568e-05	0.004672	1	0
DHX32	55760	broad.mit.edu	37	10	127530320	127530320	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:127530320A>C	uc001ljf.1	-	7	2026	c.1535T>G	c.(1534-1536)ATG>AGG	p.M512R	BCCIP_uc001ljd.3_Intron|DHX32_uc001lje.1_Missense_Mutation_p.M136R|DHX32_uc001ljg.1_Missense_Mutation_p.M512R|BCCIP_uc001ljc.3_3'UTR|BCCIP_uc010quj.1_3'UTR	NM_018180	NP_060650	Q7L7V1	DHX32_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 32	512						mitochondrion|nucleus	ATP binding|helicase activity			breast(2)|ovary(1)|lung(1)	4		all_lung(145;0.00751)|Lung NSC(174;0.0115)|Colorectal(57;0.0846)|all_neural(114;0.0936)				ACCTGTTACCATGGCTGCGAT	0.378			NA											11	69					0	0	0.010729	0	0
TCERG1L	256536	broad.mit.edu	37	10	132891506	132891506	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:132891506C>A	uc001lkp.2	-	12	1766	c.1680G>T	c.(1678-1680)CAG>CAT	p.Q560H		NM_174937	NP_777597	Q5VWI1	TCRGL_HUMAN	transcription elongation regulator 1-like	560	FF 2.									large_intestine(2)|ovary(2)	4		all_cancers(35;1.22e-10)|all_epithelial(44;2.65e-09)|Lung NSC(174;0.00188)|all_lung(145;0.00307)|Melanoma(40;0.0179)|all_neural(114;0.0424)|Breast(234;0.0743)|Colorectal(57;0.09)		all cancers(32;0.000899)|OV - Ovarian serous cystadenocarcinoma(35;0.0021)|Epithelial(32;0.00276)		AAAAATGCTCCTGGTCCTTTC	0.398			NA											20	86					1.87028e-06	2.53111e-06	0.012319	1	0
Unknown	0	broad.mit.edu	37	10	134664738	134664738	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr10:134664738C>T	uc010qux.1	-	32	4824	c.4824G>A	c.(4822-4824)CTG>CTA	p.L1608L		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.												NA						GGAGCATGTCCAGAGCCATTT	0.612			NA											7	28					0	0	0.001984	0	0
B4GALNT4	338707	broad.mit.edu	37	11	379988	379988	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:379988G>T	uc001lpb.2	+	16	2620	c.2611G>T	c.(2611-2613)GAG>TAG	p.E871*		NM_178537	NP_848632	Q76KP1	B4GN4_HUMAN	beta	871	Lumenal (Potential).					Golgi cisterna membrane|integral to membrane	N-acetyl-beta-glucosaminyl-glycoprotein 4-beta-N-acetylgalactosaminyltransferase activity			pancreas(1)	1		all_cancers(49;1.59e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.56e-27)|Epithelial(43;9.31e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0182)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TATGGACGTGGAGCGGGCCCT	0.682			NA											6	40					1.06961e-07	1.57342e-07	0.00308	1	0
MUC2	4583	broad.mit.edu	37	11	1084795	1084795	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:1084795G>A	uc001lsx.1	+	20	2617	c.2590G>A	c.(2590-2592)GGG>AGG	p.G864R		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	864	VWFD 3.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	CTCCATTTACGGGAGTGGCCA	0.597			NA											3	7					0	0	0.004672	0	0
OR52E2	119678	broad.mit.edu	37	11	5080580	5080580	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:5080580C>A	uc010qyw.1	-	1	278	c.278G>T	c.(277-279)GGG>GTG	p.G93V		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		AAAGATGATCCCTCTGAGGTT	0.483			NA											6	12					3.59834e-05	4.49515e-05	0.001168	1	0
OR51M1	390059	broad.mit.edu	37	11	5410856	5410856	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:5410856C>A	uc010qzc.1	+	1	228	c.228C>A	c.(226-228)TCC>TCA	p.S76S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	76						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATCTACTATCCTTGCTGGCCC	0.468			NA											22	90					7.45023e-12	1.29265e-11	0.010504	1	0
OR51I2	390064	broad.mit.edu	37	11	5475122	5475122	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:5475122T>A	uc010qzf.1	+	1	404	c.404T>A	c.(403-405)GTG>GAG	p.V135E	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TATGCAACTGTGCTCACCACT	0.473			NA											21	103					0	0	0.014323	0	0
UBQLN3	50613	broad.mit.edu	37	11	5530683	5530683	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:5530683A>T	uc001may.1	-	2	192	c.106T>A	c.(106-108)TCA>ACA	p.S36T	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	36	Ubiquitin-like.									ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGTAACTGAGAAATCCTCC	0.522	Ovarian(72;684 1260 12332 41642 52180)		NA											17	80					0	0	0.010504	0	0
OR52B6	340980	broad.mit.edu	37	11	5603032	5603032	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:5603032C>T	uc010qzi.1	+	1	926	c.926C>T	c.(925-927)CCC>CTC	p.P309L	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	309	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGCTCAATCCCGTTATTTAT	0.438			NA											25	127					0	0	0.003954	0	0
OR52N4	390072	broad.mit.edu	37	11	5776693	5776693	+	Silent	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:5776693T>C	uc001mbu.2	+	1	771	c.723T>C	c.(721-723)AAT>AAC	p.N241N	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	241	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		AGGCCTTTAATACCTGCACTG	0.493			NA											15	138					0	0	0.00245	0	0
PTPN5	84867	broad.mit.edu	37	11	18765712	18765712	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:18765712G>T	uc001mpd.2	-	4	563	c.132C>A	c.(130-132)GAC>GAA	p.D44E	PTPN5_uc001mpb.2_Missense_Mutation_p.D44E|PTPN5_uc001mpc.2_Missense_Mutation_p.D44E|PTPN5_uc001mpe.2_Missense_Mutation_p.D44E|PTPN5_uc010rdj.1_Missense_Mutation_p.D20E|PTPN5_uc001mpf.2_Missense_Mutation_p.D20E|PTPN5_uc010rdk.1_Intron	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	44						integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						CTTCAGCCTCGTCCAGTGCCT	0.672			NA											24	124					1.85244e-09	2.93786e-09	0.00333	1	0
ANO3	63982	broad.mit.edu	37	11	26669345	26669345	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:26669345C>A	uc001mqt.3	+	24	2663	c.2518C>A	c.(2518-2520)CGT>AGT	p.R840S	ANO3_uc010rdr.1_Missense_Mutation_p.R824S|ANO3_uc010rds.1_Missense_Mutation_p.R679S|ANO3_uc010rdt.1_Missense_Mutation_p.R694S	NM_031418	NP_113606	Q9BYT9	ANO3_HUMAN	transmembrane protein 16C	840	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						TTACATCCCACGTTTTGTTTA	0.348			NA											13	61					0.00010058	0.000119752	0.013537	1	0
PAMR1	25891	broad.mit.edu	37	11	35515796	35515796	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:35515796C>A	uc001mwg.2	-	2	141	c.98G>T	c.(97-99)TGC>TTC	p.C33F	PAMR1_uc001mwf.2_Missense_Mutation_p.C33F|PAMR1_uc010rew.1_Missense_Mutation_p.C33F|PAMR1_uc010rex.1_5'UTR	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	33					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						TGCTCCAGGGCAGGCTTCATT	0.458			NA											14	60					6.94344e-10	1.12312e-09	0.006122	1	0
DGKZ	8525	broad.mit.edu	37	11	46398736	46398736	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:46398736C>T	uc001ncn.1	+	26	3005	c.2880C>T	c.(2878-2880)CCC>CCT	p.P960P	DGKZ_uc001nch.1_Silent_p.P788P|DGKZ_uc010rgq.1_Silent_p.P715P|DGKZ_uc001ncj.1_Silent_p.P738P|DGKZ_uc010rgr.1_Silent_p.P737P|DGKZ_uc001nck.1_Silent_p.P550P|DGKZ_uc001ncl.2_Silent_p.P772P|DGKZ_uc001ncm.2_Silent_p.P771P|DGKZ_uc009yky.1_Silent_p.P772P|DGKZ_uc010rgs.1_Silent_p.P749P	NM_001105540	NP_001099010	Q13574	DGKZ_HUMAN	diacylglycerol kinase zeta isoform 4	960					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell migration|intracellular signal transduction|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of mitotic cell cycle|platelet activation	cytoplasm|lamellipodium|nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|diacylglycerol kinase activity|lipid kinase activity|metal ion binding|protein binding|protein C-terminus binding			pancreas(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(35;0.0259)|Lung(87;0.141)		CCCCTCTCCCCACCTCACCCT	0.478			NA											6	18					0	0	0.001984	0	0
OR5L2	26338	broad.mit.edu	37	11	55595244	55595244	+	Missense_Mutation	SNP	C	C	A	rs142870159		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:55595244C>A	uc001nhy.1	+	1	550	c.550C>A	c.(550-552)CTC>ATC	p.L184I		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				TCTACCCCCTCTCCTAAGTCT	0.463			NA								HNSCC(27;0.073)			29	200					2.70662e-09	4.25926e-09	0.009535	1	0
OR10AG1	282770	broad.mit.edu	37	11	55735507	55735507	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:55735507G>T	uc010rit.1	-	1	433	c.433C>A	c.(433-435)CCT>ACT	p.P145T		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	145	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					ATTACTACAGGAATTGTGATG	0.418			NA											9	54					1.12685e-05	1.47107e-05	0.004482	1	0
OR8H2	390151	broad.mit.edu	37	11	55873077	55873077	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:55873077C>A	uc010riy.1	+	1	559	c.559C>A	c.(559-561)CTG>ATG	p.L187M		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					AATTTTAGCTCTGTCCTGCAC	0.403			NA								HNSCC(53;0.14)			36	187					2.87052e-16	5.60303e-16	0.005524	1	0
SERPING1	710	broad.mit.edu	37	11	57381888	57381888	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:57381888T>A	uc001nkp.1	+	8	1528	c.1337T>A	c.(1336-1338)GTG>GAG	p.V446E	SERPING1_uc001nkq.1_Missense_Mutation_p.V409E|SERPING1_uc010rju.1_Missense_Mutation_p.V394E|SERPING1_uc010rjv.1_Missense_Mutation_p.V451E|SERPING1_uc001nkr.1_Missense_Mutation_p.V446E|SERPING1_uc009ymi.1_Missense_Mutation_p.V455E|SERPING1_uc009ymj.1_3'UTR|SERPING1_uc001nks.1_Missense_Mutation_p.V137E	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	446					blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						CACCAGACAGTGCTGGAACTG	0.557			NA							Hereditary_Angioedema				9	49					0	0	0.004482	0	0
MS4A4A	51338	broad.mit.edu	37	11	60073661	60073661	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:60073661G>T	uc001noz.2	+	6	645	c.635G>T	c.(634-636)TGT>TTT	p.C212F	MS4A4A_uc001npa.2_Missense_Mutation_p.C193F|MS4A4A_uc001npb.2_Missense_Mutation_p.C193F|MS4A4A_uc001npc.2_Missense_Mutation_p.C140F	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	212	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						GTGCTCTGTTGTACCCCTGGT	0.358			NA											12	83					7.93312e-07	1.09927e-06	0.00245	1	0
PACS1	55690	broad.mit.edu	37	11	65988115	65988115	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:65988115T>C	uc001oha.1	+	9	1186	c.1052T>C	c.(1051-1053)CTG>CCG	p.L351P		NM_018026	NP_060496	Q6VY07	PACS1_HUMAN	phosphofurin acidic cluster sorting protein 1	351					interspecies interaction between organisms|regulation of defense response to virus by virus|viral reproduction	cytosol	protein binding			ovary(6)	6						GGCTTTGGGCTGGAGCATGTG	0.527			NA											6	44					0	0	0.001984	0	0
ALDH3B2	222	broad.mit.edu	37	11	67432013	67432013	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:67432013C>G	uc001omr.2	-	8	1166	c.727G>C	c.(727-729)GTG>CTG	p.V243L	ALDH3B2_uc001oms.2_Missense_Mutation_p.V243L|ALDH3B2_uc009ysa.1_Missense_Mutation_p.V243L	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	243					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	GTCTCCTGCACGTCCACCAGC	0.662			NA											8	31					0	0	0.00308	0	0
SLCO2B1	11309	broad.mit.edu	37	11	74876920	74876920	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:74876920T>A	uc001owb.2	+	4	761	c.374T>A	c.(373-375)GTG>GAG	p.V125E	SLCO2B1_uc010rrq.1_Intron|SLCO2B1_uc010rrr.1_Intron|SLCO2B1_uc010rrs.1_Missense_Mutation_p.V9E|SLCO2B1_uc001owc.2_Missense_Mutation_p.V9E|SLCO2B1_uc001owd.2_Missense_Mutation_p.V103E	NM_007256	NP_009187	O94956	SO2B1_HUMAN	solute carrier organic anion transporter family,	125	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane	sodium-independent organic anion transmembrane transporter activity			ovary(1)|breast(1)	2					Ergoloid mesylate(DB01049)	GCTATCCTTGTGGCCCTGGCG	0.592			NA											25	113					0	0	0.003954	0	0
RAB38	23682	broad.mit.edu	37	11	87847169	87847169	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:87847169C>A	uc001pcj.1	-	3	670	c.623G>T	c.(622-624)TGT>TTT	p.C208F		NM_022337	NP_071732	P57729	RAB38_HUMAN	RAB38	208		Not methylated.			protein transport|small GTPase mediated signal transduction	melanosome|plasma membrane	GTP binding|GTPase activity			upper_aerodigestive_tract(1)|large_intestine(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				GGATTTGGCACAGCCAGAGCA	0.473			NA											19	93					6.49762e-13	1.18297e-12	0.006122	1	0
GRM5	2915	broad.mit.edu	37	11	88300971	88300971	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:88300971A>T	uc001pcq.2	-	7	2080	c.1880T>A	c.(1879-1881)CTG>CAG	p.L627Q	GRM5_uc009yvm.2_Missense_Mutation_p.L627Q	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	627	Helical; Name=2; (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	TAAGTAGCCCAGGCAGATGCC	0.473			NA											6	26					0	0	0.00308	0	0
FAM55D	54827	broad.mit.edu	37	11	114453728	114453728	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:114453728T>A	uc001ppc.2	-	3	293	c.112A>T	c.(112-114)AAC>TAC	p.N38Y	FAM55D_uc001ppd.2_5'UTR	NM_001077639	NP_001071107	Q6UWF7	FA55D_HUMAN	hypothetical protein LOC54827 isoform 1	38						extracellular region				ovary(2)|skin(2)	4		all_cancers(61;8.53e-16)|all_epithelial(67;1.71e-08)|all_hematologic(158;3.05e-05)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0194)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.82e-06)|Epithelial(105;0.000129)|all cancers(92;0.000938)		ATGGATAAGTTTAGAGCAGAC	0.388			NA											7	163					0	0	0.001984	0	0
PHLDB1	23187	broad.mit.edu	37	11	118498623	118498623	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:118498623A>T	uc001ptr.1	+	7	1437	c.1084A>T	c.(1084-1086)AGC>TGC	p.S362C	PHLDB1_uc010ryh.1_Missense_Mutation_p.S361C|PHLDB1_uc001pts.2_Missense_Mutation_p.S362C|PHLDB1_uc001ptt.2_Missense_Mutation_p.S362C|PHLDB1_uc001ptu.1_Intron|PHLDB1_uc001ptv.1_Missense_Mutation_p.S162C|PHLDB1_uc001ptw.1_5'Flank	NM_015157	NP_055972	Q86UU1	PHLB1_HUMAN	pleckstrin homology-like domain, family B,	362											0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0523)|all_hematologic(192;0.0735)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.4e-05)		GGTGGCCATCAGCCTGAGTGA	0.627			NA											13	33					0	0	0.013537	0	0
SC5DL	6309	broad.mit.edu	37	11	121177914	121177914	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:121177914A>T	uc001pxu.2	+	5	741	c.593A>T	c.(592-594)TAC>TTC	p.Y198F	SC5DL_uc001pxt.2_3'UTR|SC5DL_uc001pxv.2_Missense_Mutation_p.Y198F	NM_006918	NP_008849	O75845	SC5D_HUMAN	sterol-C5-desaturase	198	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	C-5 sterol desaturase activity|iron ion binding|lathosterol oxidase activity			ovary(1)	1		Breast(109;0.00328)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)	OV - Ovarian serous cystadenocarcinoma(1;0.0334)	BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.144)		TTAAGTCTGTACATCTTGGTT	0.378			NA											6	166					0	0	0.001984	0	0
SCN3B	55800	broad.mit.edu	37	11	123513202	123513202	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr11:123513202G>T	uc001pza.1	-	4	804	c.397C>A	c.(397-399)CCC>ACC	p.P133T	SCN3B_uc001pzb.1_Missense_Mutation_p.P133T	NM_001040151	NP_001035241	Q9NY72	SCN3B_HUMAN	voltage-gated sodium channel beta-3 subunit	133	Ig-like C2-type.|Extracellular (Potential).				axon guidance	integral to membrane|plasma membrane	voltage-gated sodium channel activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6		Breast(109;0.00204)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0227)		TTCACAAAGGGCCGATGCGCC	0.597			NA											16	33					6.72482e-11	1.11897e-10	0.003163	1	0
PDE3A	5139	broad.mit.edu	37	12	20522824	20522824	+	Silent	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:20522824A>T	uc001reh.1	+	1	628	c.606A>T	c.(604-606)ACA>ACT	p.T202T		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	202	Helical; (Potential).				lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	CCGCCGCGACATGGCTGGTGC	0.652			NA											4	23					0	0	0.000602	0	0
GOLT1B	51026	broad.mit.edu	37	12	21661496	21661496	+	Splice_Site	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:21661496G>T	uc001rez.2	+	3	455	c.296_splice	c.e3+1	p.R99_splice	GOLT1B_uc009zis.2_Splice_Site|GOLT1B_uc009zit.2_Splice_Site|GOLT1B_uc009ziu.2_Intron	NM_016072	NP_057156	Q9Y3E0	GOT1B_HUMAN	golgi transport 1 homolog B						positive regulation of I-kappaB kinase/NF-kappaB cascade|protein transport|vesicle-mediated transport	endoplasmic reticulum|Golgi membrane|integral to membrane	signal transducer activity				0						TCTTGTTCAGGTAAGGCATAT	0.353			NA											12	86					6.40141e-05	7.87568e-05	0.010729	1	0
KRAS	3845	broad.mit.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	A	rs121913529		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:25398284C>A	uc001rgp.1	-	2	216	c.35G>T	c.(34-36)GGT>GTT	p.G12V	KRAS_uc001rgq.1_Missense_Mutation_p.G12V|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	12	GTP.		G -> D (in pancreatic carcinoma, GASC and lung carcinoma; somatic mutation).|G -> R (in lung cancer and bladder cancer; somatic mutation).|G -> S (in lung carcinoma and GASC; somatic mutation).|G -> A (in a colorectal cancer sample; somatic mutation).|G -> C (in lung carcinoma; somatic mutation).|G -> V (in lung carcinoma, pancreatic carcinoma, colon cancer and GASC; somatic mutation).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding	p.G12D(7175)|p.G12V(4780)|p.G12C(2482)|p.G12A(1180)|p.G12S(1119)|p.G12R(691)|p.G12?(50)|p.G12F(34)|p.G12N(6)|p.G12G(6)|p.G12L(5)|p.G12I(4)|p.G12_G13insG(4)|p.G12E(3)|p.G12W(3)|p.A11_G12insGA(2)|p.G12Y(2)|p.G12fs*3(1)		large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			GCCTACGCCACCAGCTCCAAC	0.348	Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)	G12D(HPAC_PANCREAS)|G12V(SW403_LARGE_INTESTINE)|G12D(HPAFII_PANCREAS)|G12D(PANC0403_PANCREAS)|G12D(KOPN8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12A(KMS28BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(NCIH441_LUNG)|G12D(SU8686_PANCREAS)|G12D(SUIT2_PANCREAS)|G12D(PK1_PANCREAS)|G12V(KP3_PANCREAS)|G12D(PANC0813_PANCREAS)|G12A(SW1116_LARGE_INTESTINE)|G12D(LS180_LARGE_INTESTINE)|G12V(NCIH727_LUNG)|G12V(PATU8988S_PANCREAS)|G12V(CAPAN2_PANCREAS)|G12D(KP4_PANCREAS)|G12D(LS513_LARGE_INTESTINE)|G12D(SNUC2A_LARGE_INTESTINE)|G12V(SW480_LARGE_INTESTINE)|G12V(COLO668_LUNG)|G12D(COLO678_LARGE_INTESTINE)|G12V(RERFLCAD2_LUNG)|G12D(PANC0203_PANCREAS)|G12V(CFPAC1_PANCREAS)|G12V(SW900_LUNG)|G12V(LCLC97TM1_LUNG)|G12V(SW620_LARGE_INTESTINE)|G12A(MM1S_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(SH10TC_STOMACH)|G12V(A498_KIDNEY)|G12D(PK59_PANCREAS)|G12D(HEC1A_ENDOMETRIUM)|G12D(PANC0504_PANCREAS)|G12V(SNGM_ENDOMETRIUM)|G12A(RERFLCAD1_LUNG)|G12A(KPNSI9S_AUTONOMIC_GANGLIA)|G12D(ASPC1_PANCREAS)|G12A(RPMI8226_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12V(RCM1_LARGE_INTESTINE)|G12V(CORL23_LUNG)|G12D(SW1990_PANCREAS)|G12D(HEYA8_OVARY)|G12A(NCIH1573_LUNG)|G12A(NCIH2009_LUNG)|G12V(HUPT4_PANCREAS)|G12D(KARPAS620_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(HEC50B_ENDOMETRIUM)|G12V(YAPC_PANCREAS)|G12V(NCIH2444_LUNG)|G12V(HCC56_LARGE_INTESTINE)|G12D(MCAS_OVARY)|G12V(DANG_PANCREAS)|G12V(SHP77_LUNG)|G12D(AGS_STOMACH)|G12D(SKLU1_LUNG)|G12V(QGP1_PANCREAS)|G12D(L33_PANCREAS)|G12V(PANC0327_PANCREAS)|G12D(PANC1_PANCREAS)|G12V(RKN_OVARY)|G12V(PATU8902_PANCREAS)	119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			7	19					0.00198382	0.00223731	0.001984	1	0
CNTN1	1272	broad.mit.edu	37	12	41327516	41327516	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:41327516G>C	uc001rmm.1	+	9	934	c.821G>C	c.(820-822)CGA>CCA	p.R274P	CNTN1_uc009zjy.1_Missense_Mutation_p.R274P|CNTN1_uc001rmn.1_Missense_Mutation_p.R263P|CNTN1_uc001rmo.2_Missense_Mutation_p.R274P	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	274	Ig-like C2-type 3.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				CCGGATATCCGATGGCGGAAG	0.373			NA											26	109					0	0	0.00632	0	0
ACVR1B	91	broad.mit.edu	37	12	52377917	52377917	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:52377917G>A	uc001rzn.2	+	5	988	c.946G>A	c.(946-948)GCA>ACA	p.A316T	ACVR1B_uc001rzl.2_Missense_Mutation_p.A316T|ACVR1B_uc001rzm.2_Missense_Mutation_p.A316T|ACVR1B_uc010snn.1_Missense_Mutation_p.A357T	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	316	Protein kinase.|Cytoplasmic (Potential).				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	TAGTGGGCTGGCACACCTGCA	0.542			NA											4	25					0	0	0.000602	0	0
KRT77	374454	broad.mit.edu	37	12	53096691	53096691	+	Silent	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:53096691G>A	uc001saw.2	-	1	557	c.528C>T	c.(526-528)GCC>GCT	p.A176A	KRT77_uc009zmi.2_5'UTR	NM_175078	NP_778253	Q7Z794	K2C1B_HUMAN	keratin 77	176	Coil 1A.|Rod.					keratin filament	structural molecule activity			ovary(1)	1						caatgaaggaggcaaacttgt	0.318			NA											10	106					0	0	0.008291	0	0
INHBE	83729	broad.mit.edu	37	12	57850274	57850274	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:57850274G>T	uc001snw.2	+	2	920	c.696G>T	c.(694-696)CGG>CGT	p.R232R		NM_031479	NP_113667	P58166	INHBE_HUMAN	activin beta E precursor	232					growth	extracellular region	growth factor activity|hormone activity			breast(2)|central_nervous_system(1)	3						GAGCAGGCCGGGCCAGGAGGA	0.607	GBM(191;1808 2166 15720 36624 50371)		NA									OREG0021944	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	75					1.52009e-12	2.74292e-12	0.003163	1	0
HMGA2	8091	broad.mit.edu	37	12	66221815	66221815	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:66221815G>T	uc001ssx.2	+	2	957	c.146G>T	c.(145-147)AGG>ATG	p.R49M	RPSAP52_uc001sso.2_5'Flank|HMGA2_uc001ssw.1_Missense_Mutation_p.R49M|HMGA2_uc001ssp.1_RNA|HMGA2_uc010ssv.1_RNA|HMGA2_uc001sss.1_RNA|HMGA2_uc001sst.1_Missense_Mutation_p.R49M|HMGA2_uc001ssu.1_Missense_Mutation_p.R49M|HMGA2_uc001ssv.2_Missense_Mutation_p.R49M	NM_003483	NP_003474	P52926	HMGA2_HUMAN	high mobility group AT-hook 2 isoform a	49	A.T hook 2.|Interaction with E4F1.				cell division|chromatin organization|mitosis|multicellular organismal development|regulation of growth|transcription, DNA-dependent	chromatin	AT DNA binding		HMGA2/LPP(161)|HMGA2/WIF1_ENST00000286574(14)|HMGA2/RAD51B(11)|HMGA2/NFIB_ENST00000397581(8)|HMGA2/FHIT_ENST00000476844(4)|HMGA2/CCNB1IP1(2)|HMGA2/ALDH2_ENST00000261733(2)|HMGA2/EBF1(2)|HMGA2/LHFP(2)|HMGA2/COX6C(2)	soft_tissue(159)|bone(27)|salivary_gland(22)	208	all_cancers(1;5.78e-46)		GBM - Glioblastoma multiforme(1;0.00179)|LUSC - Lung squamous cell carcinoma(43;0.156)	GBM - Glioblastoma multiforme(28;0.0386)		AAGAGACCCAGGGGAAGACCC	0.448			NA	T	LHFP|RAD51L1|LPP|HEI10|COX6C|CMKOR1|NFIB|ALDH2|CCNB1IP1|EBF1|WIF1|FHIT	lipoma|leiomyoma|pleiomorphic salivary gland adenoma								7	35					0.00621372	0.00681829	0.006214	1	0
GLIPR1	11010	broad.mit.edu	37	12	75875626	75875626	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:75875626G>C	uc001sxs.2	+	2	335	c.187G>C	c.(187-189)GCA>CCA	p.A63P	GLIPR1_uc009zsb.1_Missense_Mutation_p.A63P	NM_006851	NP_006842	P48060	GLIP1_HUMAN	GLI pathogenesis-related 1 precursor	63					cellular lipid metabolic process	extracellular region|integral to membrane				large_intestine(1)|ovary(1)|skin(1)	3						TTGGGACCCAGCACTAGCCCA	0.453			NA											28	171					0	0	0.010818	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85518290	85518290	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:85518290G>T	uc001tac.2	+	17	4111	c.4000G>T	c.(4000-4002)GAA>TAA	p.E1334*	LRRIQ1_uc001tab.1_Nonsense_Mutation_p.E1334*	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1334										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TGAGCCTAGTGAAAAAATGTA	0.328			NA											30	196					4.22769e-11	7.15185e-11	0.00632	1	0
USP44	84101	broad.mit.edu	37	12	95927532	95927532	+	Silent	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:95927532T>C	uc001teg.2	-	2	645	c.501A>G	c.(499-501)GAA>GAG	p.E167E	USP44_uc001teh.2_Silent_p.E167E|USP44_uc009zte.2_Silent_p.E164E	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	167					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						TGGGTGATTGTTCAAACCATG	0.383			NA											21	81					0	0	0.010504	0	0
CDK17	5128	broad.mit.edu	37	12	96707200	96707200	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:96707200C>A	uc001tep.1	-	4	805	c.316G>T	c.(316-318)GAT>TAT	p.D106Y	CDK17_uc009ztk.2_Missense_Mutation_p.D106Y|CDK17_uc010svb.1_Missense_Mutation_p.D53Y	NM_002595	NP_002586	Q00537	CDK17_HUMAN	PCTAIRE protein kinase 2	106							ATP binding|cyclin-dependent protein kinase activity			ovary(3)|lung(2)|kidney(1)|central_nervous_system(1)	7						CTCTCACCATCTGATCCCATT	0.333			NA											4	44					0.00024832	0.000291381	0.009096	1	0
NEDD1	121441	broad.mit.edu	37	12	97313900	97313900	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:97313900C>A	uc001teu.3	+	6	825	c.486C>A	c.(484-486)AAC>AAA	p.N162K	NEDD1_uc001tev.3_Missense_Mutation_p.N162K|NEDD1_uc010svc.1_Missense_Mutation_p.N73K|NEDD1_uc001tew.2_Missense_Mutation_p.N169K|NEDD1_uc001tex.2_Missense_Mutation_p.N73K	NM_152905	NP_690869	Q8NHV4	NEDD1_HUMAN	neural precursor cell expressed, developmentally	162	WD 5.				cell division|G2/M transition of mitotic cell cycle|mitosis	cytosol					0						ATGGTAGTAACCAGGTACAGT	0.323			NA											13	98					7.93312e-07	1.09927e-06	0.00245	1	0
C12orf42	374470	broad.mit.edu	37	12	103699904	103699904	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:103699904T>A	uc001tjt.2	-	5	567	c.479A>T	c.(478-480)CAG>CTG	p.Q160L	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Missense_Mutation_p.Q160L|C12orf42_uc001tju.2_Missense_Mutation_p.Q65L	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	160										ovary(1)|central_nervous_system(1)	2						GTTCCAAGCCTGCTTGGGTGC	0.493			NA											10	49					0	0	0.006214	0	0
PWP1	11137	broad.mit.edu	37	12	108086637	108086637	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:108086637G>T	uc001tmo.1	+	4	453	c.366G>T	c.(364-366)GGG>GGT	p.G122G	PWP1_uc001tmn.1_RNA|PWP1_uc009zuu.1_Silent_p.G122G	NM_007062	NP_008993	Q13610	PWP1_HUMAN	periodic tryptophan protein 1	122					transcription, DNA-dependent	nucleus					0						CGGTCTACGGGAGTAATGATC	0.338			NA											7	71					1.12685e-05	1.47107e-05	0.004482	1	0
RASAL1	8437	broad.mit.edu	37	12	113557022	113557022	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:113557022C>A	uc001tum.1	-	8	846	c.553G>T	c.(553-555)GAG>TAG	p.E185*	RASAL1_uc010syp.1_Nonsense_Mutation_p.E185*|RASAL1_uc001tul.2_Nonsense_Mutation_p.E185*|RASAL1_uc001tun.1_Nonsense_Mutation_p.E185*|RASAL1_uc010syq.1_Nonsense_Mutation_p.E185*|RASAL1_uc001tuo.3_Nonsense_Mutation_p.E185*|RASAL1_uc010syr.1_Nonsense_Mutation_p.E185*	NM_004658	NP_004649	O95294	RASL1_HUMAN	RAS protein activator like 1	185	C2 2.				intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	metal ion binding|phospholipid binding|Ras GTPase activator activity			ovary(2)|skin(2)	4						TCCCGCAGCTCCAGCACTTCA	0.617			NA											13	36					9.31168e-06	1.23145e-05	0.001855	1	0
PLBD2	196463	broad.mit.edu	37	12	113812724	113812724	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:113812724C>T	uc001tve.2	+	5	806	c.771C>T	c.(769-771)CTC>CTT	p.L257L	PLBD2_uc001tvf.2_Silent_p.L257L	NM_173542	NP_775813	Q8NHP8	PLBL2_HUMAN	phospholipase B domain containing 2 isoform 1	257					lipid catabolic process	lysosomal lumen	hydrolase activity				0						AGAGTGACCTCCTGGTTGCCC	0.577			NA											12	53					0	0	0.001855	0	0
SNRNP35	11066	broad.mit.edu	37	12	123950105	123950105	+	Silent	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:123950105C>G	uc001ufb.1	+	2	134	c.18C>G	c.(16-18)CCC>CCG	p.P6P	SNRNP35_uc010tar.1_Silent_p.P11P|SNRNP35_uc009zxz.2_Silent_p.P11P|SNRNP35_uc001ufc.1_Intron	NM_022717	NP_073208	Q16560	U1SBP_HUMAN	small nuclear ribonucleoprotein 35kDa (U11/U12)	6					mRNA processing	U12-type spliceosomal complex	nucleotide binding|RNA binding				0						ATTGGATGCCCATCGCCAAGG	0.453			NA											9	37					0	0	0.008291	0	0
RIMBP2	23504	broad.mit.edu	37	12	130926762	130926762	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:130926762A>T	uc001uil.2	-	8	1248	c.1084T>A	c.(1084-1086)TGC>AGC	p.C362S	RIMBP2_uc001uim.2_Missense_Mutation_p.C270S|RIMBP2_uc001uin.1_Missense_Mutation_p.C21S	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	362	Fibronectin type-III 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CGGTAGGTGCAGGCTGCCATG	0.622			NA											5	45					0	0	0.000602	0	0
PARP4	143	broad.mit.edu	37	13	25060347	25060347	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:25060347C>A	uc001upl.2	-	11	1417	c.1311G>T	c.(1309-1311)TTG>TTT	p.L437F	PARP4_uc010tdc.1_Missense_Mutation_p.L437F	NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	437	PARP catalytic.				cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		GAGAACCATGCAACAAGGGCC	0.403			NA											13	64					7.03913e-09	1.08665e-08	0.013537	1	0
CDK8	1024	broad.mit.edu	37	13	26974649	26974649	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:26974649G>T	uc001uqr.1	+	10	1019	c.993G>T	c.(991-993)CAG>CAT	p.Q331H	CDK8_uc001uqs.1_Missense_Mutation_p.Q331H|CDK8_uc001uqt.1_Missense_Mutation_p.Q158H	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	331	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		AGGCTATGCAGGACCCCTATT	0.428			NA											20	123					7.45023e-12	1.29265e-11	0.010504	1	0
POSTN	10631	broad.mit.edu	37	13	38143960	38143960	+	Splice_Site	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:38143960T>C	uc001uwo.3	-	20	2388	c.2270_splice	c.e20-1	p.G757_splice	POSTN_uc010tet.1_Splice_Site_p.G258_splice|POSTN_uc001uwp.3_Splice_Site_p.G700_splice|POSTN_uc001uwr.2_Splice_Site_p.G730_splice|POSTN_uc001uwq.2_Splice_Site_p.G700_splice|POSTN_uc010teu.1_Splice_Site_p.G730_splice|POSTN_uc010tev.1_Splice_Site_p.S670_splice|POSTN_uc010tew.1_Splice_Site_p.S670_splice	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1						cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		TTTCAGGACCTATGAGAAGGA	0.224			NA											21	76					0	0	0.00278	0	0
CCDC122	160857	broad.mit.edu	37	13	44411448	44411449	+	Missense_Mutation	DNP	CG	CG	TT			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:44411448_44411449CG>TT	uc010acf.2	-	7	1048_1049	c.789_790CG>AA	c.(787-792)GCCGAA>GCAAAA	p.E264K		NM_144974	NP_659411	Q5T0U0	CC122_HUMAN	coiled-coil domain containing 122	264	Potential.										0		Lung NSC(96;7.5e-06)|Breast(139;0.00765)|Hepatocellular(98;0.00826)|Prostate(109;0.0143)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000767)|BRCA - Breast invasive adenocarcinoma(63;0.128)		TTTCTTAATTCGGCTGCAGTTT	0.381			NA											6	69					0	0	0.004672	0	0
C13orf31	144811	broad.mit.edu	37	13	44457980	44457980	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:44457980A>G	uc010acg.2	+	4	1300	c.815A>G	c.(814-816)CAG>CGG	p.Q272R	C13orf31_uc001uzf.3_Missense_Mutation_p.Q272R	NM_001128303	NP_001121775	Q8IV20	CM031_HUMAN	hypothetical protein LOC144811	272											0		Lung NSC(96;0.000163)|all_hematologic(4;0.0127)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Breast(139;0.0364)|Lung SC(185;0.0367)|Acute lymphoblastic leukemia(4;0.138)		GBM - Glioblastoma multiforme(144;0.000573)|BRCA - Breast invasive adenocarcinoma(63;0.121)		ACCACAAATCAGAGAGGAGTC	0.408			NA											19	82					0	0	0.012319	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281193	49281193	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:49281193G>T	uc010acx.1	+	6	923	c.240G>T	c.(238-240)CTG>CTT	p.L80L	CYSLTR2_uc010acy.1_Silent_p.L80L|CYSLTR2_uc010acz.1_Silent_p.L80L|CYSLTR2_uc010ada.1_Silent_p.L80L|CYSLTR2_uc010adb.1_Silent_p.L80L|CYSLTR2_uc010adc.1_Silent_p.L80L|CYSLTR2_uc010add.1_Silent_p.L80L|CYSLTR2_uc010acw.1_Silent_p.L80L|CYSLTR2_uc001vck.2_Silent_p.L80L	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	80	Helical; Name=2; (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	TGCTAAATCTGGCCATTTCAG	0.428			NA											15	64					7.93312e-07	1.09927e-06	0.00245	1	0
KLHL1	57626	broad.mit.edu	37	13	70281875	70281875	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:70281875C>A	uc001vip.2	-	10	2863	c.2069G>T	c.(2068-2070)AGA>ATA	p.R690I	KLHL1_uc010thm.1_Missense_Mutation_p.R629I	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	690	Kelch 5.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		AACAGCATCTCTGGGCATACT	0.413			NA											20	64					1.33834e-09	2.13084e-09	0.007413	1	0
TMCO3	55002	broad.mit.edu	37	13	114193696	114193696	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:114193696A>T	uc001vtu.3	+	10	1925	c.1564A>T	c.(1564-1566)ATG>TTG	p.M522L		NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	522						integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			GGACGTCTCCATGGAGCTGGG	0.642			NA											10	45					0	0	0.013537	0	0
ZNF828	283489	broad.mit.edu	37	13	115091623	115091623	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr13:115091623G>T	uc010ahb.2	+	3	2635	c.2306G>T	c.(2305-2307)CGT>CTT	p.R769L	ZNF828_uc001vuv.2_Missense_Mutation_p.R769L|ZNF828_uc010tko.1_Missense_Mutation_p.R769L	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	769	Mediates localization to the chromosome and the spindle and negatively regulates chromosome alignment.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		AAATGTCCACGTTGTAATTTT	0.363			NA											15	58					1.5739e-10	2.58705e-10	0.004007	1	0
OR4K15	81127	broad.mit.edu	37	14	20443947	20443947	+	Silent	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr14:20443947G>C	uc010tkx.1	+	1	270	c.270G>C	c.(268-270)CTG>CTC	p.L90L		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	90	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTGCAAACCTGTCATTTATAG	0.453			NA											19	114					0	0	0.00278	0	0
REC8	9985	broad.mit.edu	37	14	24648811	24648811	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr14:24648811G>A	uc001wmr.2	+	19	1757	c.1330G>A	c.(1330-1332)GAG>AAG	p.E444K	REC8_uc001wms.2_Missense_Mutation_p.E444K	NM_005132	NP_005123	O95072	REC8_HUMAN	REC8 homolog	444	Glu-rich.				mitotic metaphase/anaphase transition|mitotic prometaphase|reciprocal meiotic recombination|sister chromatid cohesion	nucleoplasm					0				GBM - Glioblastoma multiforme(265;0.00839)		GGCCTGGCCTGAGGTGGAGGC	0.622	NSCLC(139;1764 2537 12868 49041)		NA											9	46					0	0	0.008291	0	0
LRFN5	145581	broad.mit.edu	37	14	42356224	42356224	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr14:42356224C>A	uc001wvm.2	+	3	1594	c.396C>A	c.(394-396)AAC>AAA	p.N132K	LRFN5_uc010ana.2_Missense_Mutation_p.N132K	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	132	Extracellular (Potential).|LRR 4.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TACTGAACAACAATCAGCTGA	0.373			NA								HNSCC(30;0.082)			6	64					8.12818e-05	9.76344e-05	0.001984	1	0
MDGA2	161357	broad.mit.edu	37	14	47530708	47530708	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr14:47530708C>T	uc001wwj.3	-	7	1258	c.1062G>A	c.(1060-1062)GAG>GAA	p.E354E	MDGA2_uc001wwi.3_Silent_p.E125E|MDGA2_uc010ani.2_5'UTR	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	354	Ig-like 4.				spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						ATATTTTCACCTCACGGCCAA	0.388			NA											9	57					0	0	0.004482	0	0
KIAA0586	9786	broad.mit.edu	37	14	58941420	58941420	+	Silent	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr14:58941420A>G	uc001xdv.3	+	18	2775	c.2502A>G	c.(2500-2502)CCA>CCG	p.P834P	KIAA0586_uc010trr.1_Silent_p.P951P|KIAA0586_uc001xdt.3_Silent_p.P866P|KIAA0586_uc001xdu.3_Silent_p.P895P|KIAA0586_uc010trs.1_Silent_p.P825P|KIAA0586_uc010trt.1_Silent_p.P770P|KIAA0586_uc010tru.1_Silent_p.P770P	NM_014749	NP_055564	E9PGW8	E9PGW8_HUMAN	talpid3 protein	834										ovary(1)	1						ATGGTCCTCCATTTCCGCCAG	0.363			NA											9	40					0	0	0.008291	0	0
PCNX	22990	broad.mit.edu	37	14	71576295	71576295	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr14:71576295G>T	uc001xmo.2	+	35	7317	c.6871G>T	c.(6871-6873)GGC>TGC	p.G2291C	PCNX_uc010are.1_Missense_Mutation_p.G2180C|PCNX_uc010arf.1_Missense_Mutation_p.G1079C|PCNX_uc001xmp.2_Missense_Mutation_p.G375C	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	2291						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TCCGCAGGAGGGCATGGAAGG	0.483			NA											5	26					2.7689e-08	4.1636e-08	0.001984	1	0
OR4N4	283694	broad.mit.edu	37	15	22383396	22383396	+	Nonsense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:22383396T>A	uc001yuc.1	+	7	1905	c.924T>A	c.(922-924)TGT>TGA	p.C308*	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Nonsense_Mutation_p.C308*	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	308	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATGTAGTCTGTCAAGTGGATT	0.294			NA											12	62					0	0	0.010729	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413842	22413842	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:22413842C>A	uc001yuf.2	+	1	141	c.141C>A	c.(139-141)TGC>TGA	p.C47*		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TCACCATCTGCCTGCCTCTGC	0.507			NA											8	195					0.00448238	0.00499958	0.004482	1	0
C15orf2	23742	broad.mit.edu	37	15	24923779	24923779	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:24923779C>G	uc001ywo.2	+	1	3239	c.2765C>G	c.(2764-2766)CCA>CGA	p.P922R		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	922					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCAGCAACCCCAGCACCAGTT	0.468			NA											8	104					0	0	0.00308	0	0
LPCAT4	254531	broad.mit.edu	37	15	34652348	34652348	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:34652348G>T	uc001zig.2	-	12	1300	c.1206C>A	c.(1204-1206)GGC>GGA	p.G402G		NM_153613	NP_705841	Q643R3	LPCT4_HUMAN	lysophosphatidylcholine acyltransferase 4	402					phospholipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	acyltransferase activity|calcium ion binding				0						CCAGGCTCCTGCCCCCATCCA	0.602			NA											4	81					0.000602214	0.000696578	0.000602	1	0
PAK6	56924	broad.mit.edu	37	15	40568142	40568142	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:40568142G>T	uc010bbl.2	+	11	2333	c.1893G>T	c.(1891-1893)CTG>CTT	p.L631L	PAK6_uc010bbm.2_Silent_p.L631L|PAK6_uc001zky.3_Silent_p.L586L|PAK6_uc010bbn.2_Silent_p.L631L|PAK6_uc001zlb.2_Silent_p.L631L	NM_001128628	NP_001122100	Q9NQU5	PAK6_HUMAN	p21-activated kinase 6	631	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(5)|large_intestine(1)|ovary(1)|skin(1)	8		all_cancers(109;1.13e-18)|all_epithelial(112;1.62e-15)|Lung NSC(122;5.67e-11)|all_lung(180;1.41e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0823)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;1.51e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0544)		CCCCAGTGCTGCGAGACTTCC	0.577			NA											6	70					3.59834e-05	4.49515e-05	0.001168	1	0
MAPKBP1	23005	broad.mit.edu	37	15	42107526	42107526	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:42107526G>T	uc001zok.3	+	12	1544	c.1258G>T	c.(1258-1260)GAC>TAC	p.D420Y	MAPKBP1_uc001zoj.3_Missense_Mutation_p.D414Y|MAPKBP1_uc010bcj.2_5'UTR|MAPKBP1_uc010bci.2_Missense_Mutation_p.D414Y|MAPKBP1_uc010udb.1_Intron|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_5'UTR	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	420	WD 6.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		CTGCTCCTCAGACAACACCAT	0.597			NA											9	34					1.76689e-08	2.66676e-08	0.006214	1	0
TLN2	83660	broad.mit.edu	37	15	63132786	63132786	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:63132786G>A	uc002alb.3	+	56	7606	c.7606G>A	c.(7606-7608)GAG>AAG	p.E2536K	TLN2_uc002alc.3_Missense_Mutation_p.E929K|TLN2_uc010uic.1_Missense_Mutation_p.E152K	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2536					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TTTACCCACCGAGCTGAGGGA	0.562			NA											4	19					0	0	0.009096	0	0
CILP	8483	broad.mit.edu	37	15	65489472	65489472	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:65489472G>A	uc002aon.2	-	9	3333	c.3152C>T	c.(3151-3153)CCA>CTA	p.P1051L		NM_003613	NP_003604	O75339	CILP1_HUMAN	cartilage intermediate layer protein	1051					negative regulation of insulin-like growth factor receptor signaling pathway	extracellular matrix part|extracellular space|proteinaceous extracellular matrix				ovary(4)|pancreas(2)|skin(1)	7						GACTGCAAGTGGCAAGTGGTT	0.592			NA											7	54					0	0	0.001984	0	0
XYLT1	64131	broad.mit.edu	37	16	17235204	17235204	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:17235204C>A	uc002dfa.2	-	7	1478	c.1393G>T	c.(1393-1395)GAT>TAT	p.D465Y		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	465	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						AAGAGCCGATCCAGGCCCTGC	0.587			NA											12	46					0.00185496	0.00210956	0.001855	1	0
XYLT1	64131	broad.mit.edu	37	16	17294435	17294435	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:17294435A>C	uc002dfa.2	-	4	1075	c.990T>G	c.(988-990)TTT>TTG	p.F330L		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	330	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CCACCAGGACAAAGGCGATTC	0.552			NA											22	132					0	0	0.014323	0	0
THUMPD1	55623	broad.mit.edu	37	16	20748556	20748556	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:20748556C>A	uc002dho.2	-	4	846	c.708G>T	c.(706-708)CAG>CAT	p.Q236H	THUMPD1_uc010vaz.1_Missense_Mutation_p.Q89H|THUMPD1_uc002dhp.2_Missense_Mutation_p.Q236H	NM_017736	NP_060206	Q9NXG2	THUM1_HUMAN	THUMP domain containing 1	236	THUMP.										0						CCACTGTGTACTGTGGATTGG	0.388			NA											13	81					4.3838e-07	6.31143e-07	0.001855	1	0
SPNS1	83985	broad.mit.edu	37	16	28990742	28990742	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:28990742G>T	uc010vdi.1	+	6	753	c.613G>T	c.(613-615)GCA>TCA	p.A205S	uc010vct.1_Intron|SPNS1_uc002dry.2_Missense_Mutation_p.A205S|SPNS1_uc002drx.2_Missense_Mutation_p.A132S|SPNS1_uc002dsa.2_Missense_Mutation_p.A205S|SPNS1_uc002drz.2_Missense_Mutation_p.A205S|SPNS1_uc010byp.2_Missense_Mutation_p.A183S|SPNS1_uc010byq.1_Missense_Mutation_p.A132S	NM_001142448	NP_001135920	Q9H2V7	SPNS1_HUMAN	spinster homolog 1 isoform 1	205	Helical; (Potential).				lipid transport|transmembrane transport	integral to membrane|mitochondrial inner membrane	protein binding				0						GGGCTACATTGCAGGCTCCAA	0.617			NA											16	72					1.33834e-09	2.13084e-09	0.007413	1	0
CORO1A	11151	broad.mit.edu	37	16	30198005	30198005	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:30198005C>T	uc002dww.2	+	3	407	c.285C>T	c.(283-285)AAC>AAT	p.N95N	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|CORO1A_uc010vej.1_Silent_p.N95N|CORO1A_uc010bzq.2_Silent_p.N95N|CORO1A_uc010bzr.2_Silent_p.N95N|CORO1A_uc002dwx.2_Translation_Start_Site|CORO1A_uc002dwy.1_Translation_Start_Site|LOC606724_uc002dwz.1_5'Flank	NM_007074	NP_009005	P31146	COR1A_HUMAN	coronin, actin binding protein, 1A	95	WD 2.				cell-substrate adhesion|innate immune response|leukocyte chemotaxis|negative regulation of actin nucleation|phagolysosome assembly|positive chemotaxis|regulation of cell shape|uropod organization	actin filament|cortical actin cytoskeleton|lamellipodium|phagocytic cup|phagocytic vesicle membrane	actin filament binding|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein homodimerization activity				0						ACAATGACAACGTCATTGCCA	0.602			NA											5	16					0	0	0.000602	0	0
RNF40	9810	broad.mit.edu	37	16	30776605	30776605	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:30776605G>C	uc002dzq.2	+	7	998	c.875G>C	c.(874-876)CGA>CCA	p.R292P	RNF40_uc010caa.2_Missense_Mutation_p.R292P|RNF40_uc010cab.2_Missense_Mutation_p.R292P|RNF40_uc010vfa.1_Intron|RNF40_uc002dzr.2_Missense_Mutation_p.R292P|RNF40_uc010vfb.1_Intron|RNF40_uc010vfc.1_5'Flank	NM_014771	NP_055586	O75150	BRE1B_HUMAN	ring finger protein 40	292	Potential.				histone H2B ubiquitination|histone monoubiquitination|ubiquitin-dependent protein catabolic process	nucleus|synaptosome|ubiquitin ligase complex	protein homodimerization activity|ubiquitin protein ligase binding|zinc ion binding			central_nervous_system(1)	1			Colorectal(24;0.198)			CTGCGGAAGCGAGAGCAAAAG	0.597			NA											9	36					0	0	0.008291	0	0
ITGAD	3681	broad.mit.edu	37	16	31422734	31422734	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:31422734C>A	uc002ebv.1	+	14	1652	c.1603C>A	c.(1603-1605)CTG>ATG	p.L535M	ITGAD_uc010cap.1_Missense_Mutation_p.L536M	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	535	FG-GAP 6.|Extracellular (Potential).|Potential.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						TGAGGACAAGCTGATAGACGT	0.637			NA											23	181					2.21704e-12	3.93064e-12	0.00278	1	0
MMP2	4313	broad.mit.edu	37	16	55519270	55519270	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:55519270C>A	uc002ehz.3	+	4	900	c.589C>A	c.(589-591)CCA>ACA	p.P197T	MMP2_uc010vhd.1_Missense_Mutation_p.P121T|MMP2_uc010ccc.2_Missense_Mutation_p.P147T	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	197	Collagenase-like 1.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	TGCCTTCGCCCCAGGCACTGG	0.577			NA											14	90					0.000422831	0.000493303	0.004007	1	0
WWP2	11060	broad.mit.edu	37	16	69964119	69964119	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:69964119G>T	uc002exu.1	+	14	1492	c.1403G>T	c.(1402-1404)CGC>CTC	p.R468L	WWP2_uc002exv.1_Missense_Mutation_p.R468L|WWP2_uc010vlm.1_Missense_Mutation_p.R352L|WWP2_uc010vln.1_Missense_Mutation_p.R86L|WWP2_uc002exw.1_Missense_Mutation_p.R29L|uc002exx.1_5'Flank|MIR140_hsa-mir-140|MI0000456_5'Flank	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	468	WW 4.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						CACAATACCCGCACCACCACC	0.582			NA									OREG0023910	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	49					0.00136819	0.00156036	0.013537	1	0
CNTNAP4	85445	broad.mit.edu	37	16	76350316	76350316	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:76350316G>T	uc002feu.1	+	4	477	c.92G>T	c.(91-93)TGT>TTT	p.C31F	CNTNAP4_uc002fev.1_5'UTR|CNTNAP4_uc010chb.1_Missense_Mutation_p.C6F|CNTNAP4_uc002fex.1_Missense_Mutation_p.C34F|CNTNAP4_uc002few.2_Missense_Mutation_p.C6F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	31	Extracellular (Potential).|F5/8 type C.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCAGATGACTGTGATGATCCT	0.468			NA											8	28					7.48243e-07	1.04754e-06	0.006214	1	0
ADAMTS18	170692	broad.mit.edu	37	16	77355074	77355074	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:77355074C>A	uc002ffc.3	-	15	2608	c.2189G>T	c.(2188-2190)GGC>GTC	p.G730V	ADAMTS18_uc010chc.1_Missense_Mutation_p.G318V|ADAMTS18_uc002ffe.1_Missense_Mutation_p.G426V	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	730	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						TGCTTTAGAGCCTAGTTCATG	0.388			NA											14	104					6.31663e-08	9.39396e-08	0.003163	1	0
ZNF778	197320	broad.mit.edu	37	16	89293777	89293777	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr16:89293777G>T	uc002fmv.2	+	6	1336	c.997G>T	c.(997-999)GGA>TGA	p.G333*	ZNF778_uc010vpf.1_Intron|ZNF778_uc002fmw.1_Nonsense_Mutation_p.G291*|ZNF778_uc010vpg.1_Nonsense_Mutation_p.G96*	NM_182531	NP_872337	Q96MU6	ZN778_HUMAN	zinc finger protein 778	333					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0269)		AACAGACCCTGGACAGAAGCC	0.468			NA											15	91					6.72482e-11	1.11897e-10	0.003163	1	0
ANKFY1	51479	broad.mit.edu	37	17	4075872	4075872	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:4075872G>A	uc002fxq.1	-	22	3156	c.3118C>T	c.(3118-3120)CCG>TCG	p.P1040S	ANKFY1_uc002fxn.2_Missense_Mutation_p.P1082S|ANKFY1_uc002fxo.2_Missense_Mutation_p.P1041S|ANKFY1_uc002fxp.2_Missense_Mutation_p.P1039S|ANKFY1_uc010ckp.2_Missense_Mutation_p.P982S	NM_016376	NP_057460	Q9P2R3	ANFY1_HUMAN	ankyrin repeat and FYVE domain containing 1	1040						endosome membrane	metal ion binding|protein binding			ovary(2)|skin(1)	3						TCTGCATCCGGCTTGTCCAGA	0.562			NA											3	53					0	0	0.000602	0	0
ALOX12	239	broad.mit.edu	37	17	6913416	6913416	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:6913416T>A	uc002gdx.3	+	13	1836	c.1783T>A	c.(1783-1785)TGG>AGG	p.W595R	uc002gdy.1_Intron|ALOX12_uc002gdz.3_Missense_Mutation_p.W65R|RNASEK_uc002gea.2_5'Flank|C17orf49_uc002geb.3_5'Flank|C17orf49_uc002gec.2_5'Flank	NM_000697	NP_000688	P18054	LOX12_HUMAN	arachidonate 12-lipoxygenase	595	Lipoxygenase.				anti-apoptosis|cellular component movement|fatty acid oxidation|leukotriene biosynthetic process|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of cell proliferation|superoxide anion generation	cytosol|sarcolemma	arachidonate 12-lipoxygenase activity|hepoxilin-epoxide hydrolase activity|iron ion binding|lipoxygenase activity|protein binding			central_nervous_system(1)	1						GGCCATCTCATGGCATCTGAG	0.582			NA											8	20					0	0	0.00308	0	0
MYH3	4621	broad.mit.edu	37	17	10543658	10543658	+	Silent	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:10543658C>G	uc002gmq.1	-	20	2495	c.2418G>C	c.(2416-2418)GTG>GTC	p.V806V		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	806	IQ.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						ACCTCCTCTGCACCATCTTCT	0.522			NA											6	65					0	0	0.001984	0	0
DNAH9	1770	broad.mit.edu	37	17	11592948	11592949	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:11592948_11592949CC>AA	uc002gne.2	+	20	3877_3878	c.3809_3810CC>AA	c.(3808-3810)TCC>TAA	p.S1270*	DNAH9_uc010coo.2_Nonsense_Mutation_p.S564*	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1270	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CAGATGGAATCCACTATGGCCT	0.49			NA											13	72					0	0	0.004672	0	0
TOP3A	7156	broad.mit.edu	37	17	18196026	18196026	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:18196026C>A	uc002gsx.1	-	11	1443	c.1214G>T	c.(1213-1215)CGC>CTC	p.R405L	TOP3A_uc010cpz.1_5'Flank|TOP3A_uc010vxr.1_Intron|TOP3A_uc002gsw.1_Intron|TOP3A_uc010vxs.1_Missense_Mutation_p.R303L	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	405					DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						GTTCCCATTGCGTGGGGTGGG	0.562			NA											11	52					0.000673444	0.000774556	0.008291	1	0
SLC47A2	146802	broad.mit.edu	37	17	19611069	19611069	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:19611069C>G	uc002gwe.3	-	8	1000	c.825G>C	c.(823-825)GAG>GAC	p.E275D	SLC47A2_uc002gwg.3_Missense_Mutation_p.E239D|SLC47A2_uc002gwf.3_Missense_Mutation_p.E239D|SLC47A2_uc002gwh.3_RNA|SLC47A2_uc002gwi.2_RNA|SLC47A2_uc010cqs.1_RNA|SLC47A2_uc010cqt.1_RNA	NM_152908	NP_690872	Q86VL8	S47A2_HUMAN	solute carrier family 47, member 2 isoform 1	275	Cytoplasmic (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.3e-05)|all_epithelial(12;0.0024)|Breast(13;0.245)					CTGCCCACGTCTCCAGGTGCA	0.632			NA											2	4					0	0	0.004672	0	0
GAS2L2	246176	broad.mit.edu	37	17	34072004	34072004	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:34072004C>A	uc002hjv.1	-	6	2540	c.2512G>T	c.(2512-2514)GAG>TAG	p.E838*		NM_139285	NP_644814	Q8NHY3	GA2L2_HUMAN	growth arrest-specific 2 like 2	838					cell cycle arrest	cytoplasm|cytoskeleton				ovary(1)|skin(1)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		tcctcctcctcctcACCTACT	0.537			NA											9	32					1.58986e-06	2.15881e-06	0.008291	1	0
KRTAP4-11	653240	broad.mit.edu	37	17	39274206	39274206	+	Missense_Mutation	SNP	C	C	T	rs79388709		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:39274206C>T	uc002hvz.2	-	1	401	c.362G>A	c.(361-363)AGA>AAA	p.R121K		NM_033059	NP_149048	Q9BYQ6	KR411_HUMAN	keratin associated protein 4-11	121	20.|27 X 5 AA repeats of C-C-[GIKRQVHEL]- [SPTR]-[STVQRMC].					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			gcactggggtctgcagcagct	0.1			NA											3	26					0	0	0.004672	0	0
AARSD1	80755	broad.mit.edu	37	17	41103887	41103887	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:41103887C>A	uc002icc.2	-	11	1036	c.1033G>T	c.(1033-1035)GGC>TGC	p.G345C	AARSD1_uc002icd.2_Missense_Mutation_p.G458C|AARSD1_uc002ice.2_Missense_Mutation_p.G428C|AARSD1_uc002icf.2_Missense_Mutation_p.G519C|AARSD1_uc010whg.1_Missense_Mutation_p.G519C	NM_025267	NP_079543	Q9BTE6	AASD1_HUMAN	alanyl-tRNA synthetase domain containing 1	345					alanyl-tRNA aminoacylation	cytoplasm	alanine-tRNA ligase activity|ATP binding|metal ion binding|nucleic acid binding				0		Breast(137;0.00499)		BRCA - Breast invasive adenocarcinoma(366;0.161)		TTCTCATCGCCCACAGTTAAG	0.522			NA											7	28					0.00307968	0.00346357	0.00308	1	0
LRRC46	90506	broad.mit.edu	37	17	45913760	45913760	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:45913760C>A	uc002ima.2	+	7	770	c.514C>A	c.(514-516)CGC>AGC	p.R172S	LRRC46_uc002imb.2_Missense_Mutation_p.R125S	NM_033413	NP_219481	Q96FV0	LRC46_HUMAN	leucine rich repeat containing 46	172	LRRCT.									ovary(1)	1						TGTGGTGGAGCGCTGGATTTC	0.602			NA											9	29					0.00621372	0.00681829	0.006214	1	0
PPM1E	22843	broad.mit.edu	37	17	57050271	57050271	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:57050271G>C	uc002iwx.2	+	6	1322	c.1195G>C	c.(1195-1197)GTT>CTT	p.V399L	PPM1E_uc010ddd.2_Missense_Mutation_p.V162L	NM_014906	NP_055721	Q8WY54	PPM1E_HUMAN	protein phosphatase 1E	408	PP2C-like.				protein dephosphorylation	cytoplasm|nucleolus|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(3)|lung(1)|skin(1)	5	Medulloblastoma(34;0.127)|all_neural(34;0.237)		BRCA - Breast invasive adenocarcinoma(1;5.76e-11)			AAGTCTGTCGGTTTCCAGAGC	0.433			NA											14	64					0	0	0.003163	0	0
CA4	762	broad.mit.edu	37	17	58234889	58234889	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:58234889A>T	uc002iym.3	+	4	464	c.370A>T	c.(370-372)AAG>TAG	p.K124*	CA4_uc010wou.1_Intron	NM_000717	NP_000708	P22748	CAH4_HUMAN	carbonic anhydrase IV precursor	124					bicarbonate transport|one-carbon metabolic process	anchored to external side of plasma membrane|apical plasma membrane|brush border membrane|ER-Golgi intermediate compartment|membrane fraction|perinuclear region of cytoplasm|rough endoplasmic reticulum|secretory granule membrane|trans-Golgi network|transport vesicle membrane	carbonate dehydratase activity|protein binding|zinc ion binding				0	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		Epithelial(12;3.83e-12)|all cancers(12;6.83e-11)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Topiramate(DB00273)|Trichlormethiazide(DB01021)	CTTGCCATATAAGGGCTCGGA	0.607			NA											23	127					0	0	0.00278	0	0
MRC2	9902	broad.mit.edu	37	17	60754845	60754845	+	Nonsense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:60754845A>T	uc002jad.2	+	12	2452	c.2050A>T	c.(2050-2052)AAG>TAG	p.K684*	MRC2_uc010ddq.1_RNA	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	684	Extracellular (Potential).|C-type lectin 4.				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GTATTGCTATAAGGTAGGGCA	0.642			NA											3	21					0	0	0.009096	0	0
GH2	2689	broad.mit.edu	37	17	61958500	61958500	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:61958500G>T	uc002jco.1	-	3	242	c.180C>A	c.(178-180)GCC>GCA	p.A60A	GH2_uc002jcj.2_Silent_p.A60A|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Silent_p.A60A|GH2_uc002jcm.1_Silent_p.A60A|GH2_uc002jcn.1_Intron	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	60						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						TCAGGATATAGGCTTCTTCCT	0.517			NA											48	234					1.32667e-27	2.7481e-27	0.01441	1	0
QRICH2	84074	broad.mit.edu	37	17	74288678	74288678	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:74288678C>T	uc002jrd.1	-	4	1812	c.1632G>A	c.(1630-1632)TTG>TTA	p.L544L	QRICH2_uc010wsz.1_Silent_p.L470L|QRICH2_uc010dgw.1_Intron	NM_032134	NP_115510	Q9H0J4	QRIC2_HUMAN	glutamine rich 2	544	Gln-rich.						protein binding			ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)|skin(1)	5						CAGATTGTACCAAACCATGCT	0.527			NA											9	50					0	0	0.004482	0	0
SPHK1	8877	broad.mit.edu	37	17	74383634	74383634	+	Silent	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:74383634C>G	uc002jrf.1	+	8	1931	c.1122C>G	c.(1120-1122)CCC>CCG	p.P374P	SPHK1_uc002jrg.1_Silent_p.P323P|SPHK1_uc002jrh.2_Silent_p.P388P|SPHK1_uc002jrj.2_Silent_p.P460P|SPHK1_uc002jri.2_Silent_p.P374P|SPHK1_uc002jrk.3_Silent_p.P374P|uc010wtd.1_RNA	NM_001142602	NP_001136074	Q9NYA1	SPHK1_HUMAN	sphingosine kinase 1 isoform 3	374					'de novo' posttranslational protein folding|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|calcium-mediated signaling|positive regulation of angiogenesis|positive regulation of cell growth|positive regulation of cell migration|positive regulation of fibroblast proliferation|positive regulation of mitotic cell cycle|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein ubiquitination|positive regulation of smooth muscle contraction|regulation of tumor necrosis factor-mediated signaling pathway|sphingoid catabolic process|sphingosine metabolic process	cytosol|membrane fraction|nucleus|plasma membrane|soluble fraction	ATP binding|calmodulin binding|D-erythro-sphingosine kinase activity|diacylglycerol kinase activity|DNA binding|magnesium ion binding|protein phosphatase 2A binding|sphinganine kinase activity			kidney(1)	1						GCTGGAAGCCCCAGCAGATGC	0.632	GBM(90;966 1307 27369 33775 44498)		NA											5	56					0	0	0.001168	0	0
ANKRD12	23253	broad.mit.edu	37	18	9257679	9257679	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr18:9257679G>T	uc002knv.2	+	9	4671	c.4414G>T	c.(4414-4416)GAA>TAA	p.E1472*	ANKRD12_uc002knw.2_Nonsense_Mutation_p.E1449*|ANKRD12_uc002knx.2_Nonsense_Mutation_p.E1449*|ANKRD12_uc010dkx.1_Nonsense_Mutation_p.E1179*	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1472						nucleus				ovary(2)|central_nervous_system(1)	3						GCGCCAGACTGAACTGCCAGG	0.428			NA											12	45					1.08611e-07	1.59191e-07	0.010729	1	0
C18orf25	147339	broad.mit.edu	37	18	43796479	43796479	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr18:43796479G>T	uc002lbw.2	+	2	1012	c.633G>T	c.(631-633)CTG>CTT	p.L211L	C18orf25_uc002lbx.2_Silent_p.L211L	NM_145055	NP_659492	Q96B23	CR025_HUMAN	ARKadia-like 1 isoform a	211										central_nervous_system(2)	2						ATAGTGACCTGACTTGTGACT	0.478			NA											6	38					3.59834e-05	4.49515e-05	0.001168	1	0
MYO5B	4645	broad.mit.edu	37	18	47390574	47390574	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr18:47390574C>G	uc002leb.2	-	28	4068	c.3780G>C	c.(3778-3780)GAG>GAC	p.E1260D	MYO5B_uc002lea.2_Missense_Mutation_p.E401D	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	1260	Potential.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		GGATGAGCACCTCCTCCTTGC	0.667			NA											15	47					0	0	0.003163	0	0
CDH20	28316	broad.mit.edu	37	18	59217255	59217255	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr18:59217255C>A	uc010dps.1	+	10	1705	c.1693C>A	c.(1693-1695)CAG>AAG	p.Q565K	CDH20_uc002lif.2_Missense_Mutation_p.Q559K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	565	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				TTTCCGGCAGCAGGAGCAGAG	0.522			NA											4	31					0.00909568	0.00987392	0.009096	1	0
NETO1	81832	broad.mit.edu	37	18	70451042	70451042	+	Nonsense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr18:70451042T>A	uc002lkw.2	-	7	1023	c.739A>T	c.(739-741)AAA>TAA	p.K247*	NETO1_uc002lkx.1_Nonsense_Mutation_p.K246*|NETO1_uc002lky.1_Nonsense_Mutation_p.K247*	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	247	CUB 2.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		AACTTAGCTTTCAAATCCTCC	0.468			NA											33	105					0	0	0.009535	0	0
ATP9B	374868	broad.mit.edu	37	18	77133995	77133995	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr18:77133995G>T	uc002lmx.2	+	28	3182	c.3168G>T	c.(3166-3168)CTG>CTT	p.L1056L	ATP9B_uc002lmw.1_Silent_p.L1056L|ATP9B_uc002lna.2_Silent_p.L82L|ATP9B_uc002lnb.1_3'UTR|ATP9B_uc010drb.2_RNA	NM_198531	NP_940933	O43861	ATP9B_HUMAN	ATPase, class II, type 9B	1056	Helical; (Potential).				ATP biosynthetic process	integral to membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(3)	3		Esophageal squamous(42;0.018)|Melanoma(33;0.0964)|Prostate(75;0.171)		OV - Ovarian serous cystadenocarcinoma(15;1.44e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0405)		CCGAGCTGCTGATGGTGGCGC	0.597			NA											3	42					0.00909568	0.00987392	0.009096	1	0
NFIC	4782	broad.mit.edu	37	19	3452574	3452574	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:3452574C>T	uc010xhi.1	+	8	1241	c.1179C>T	c.(1177-1179)GCC>GCT	p.A393A	NFIC_uc002lxo.2_Silent_p.A384A|NFIC_uc010xhh.1_Silent_p.A384A|NFIC_uc002lxp.2_Silent_p.A393A|NFIC_uc010xhj.1_Silent_p.A393A	NM_205843	NP_995315	P08651	NFIC_HUMAN	nuclear factor I/C isoform 2	393					DNA replication|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;7.8e-05)|Epithelial(107;2.94e-108)|BRCA - Breast invasive adenocarcinoma(158;0.00154)|STAD - Stomach adenocarcinoma(1328;0.191)		CCCACACGGCCATCCGCTACC	0.657			NA											27	118					0	0	0.008361	0	0
DAPK3	1613	broad.mit.edu	37	19	3964952	3964952	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:3964952C>A	uc002lzc.1	-	2	193	c.100G>T	c.(100-102)GGC>TGC	p.G34C	DAPK3_uc002lzd.1_Missense_Mutation_p.G34C	NM_001348	NP_001339	O43293	DAPK3_HUMAN	death-associated protein kinase 3	34	Protein kinase.				apoptosis|chromatin modification|induction of apoptosis|intracellular protein kinase cascade	cytoplasm|PML body	ATP binding|leucine zipper domain binding|protein serine/threonine kinase activity			central_nervous_system(3)|lung(2)|ovary(1)|large_intestine(1)	7		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGCCCGTGCCCTTCTGCCGG	0.458			NA											5	45					8.12818e-05	9.76344e-05	0.001984	1	0
INSR	3643	broad.mit.edu	37	19	7174600	7174600	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:7174600C>T	uc002mgd.1	-	4	1226	c.1117G>A	c.(1117-1119)GGA>AGA	p.G373R	INSR_uc002mge.1_Missense_Mutation_p.G373R|INSR_uc002mgf.2_Missense_Mutation_p.G373R	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	373					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCACTGCCTCCTCGAATGTTG	0.602			NA											7	42					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9061893	9061893	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:9061893G>T	uc002mkp.2	-	3	25757	c.25553C>A	c.(25552-25554)ACC>AAC	p.T8518N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8520	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACCAAAAGGTTGTTGTTGA	0.502			NA											21	86					1.37657e-19	2.73963e-19	0.012319	1	0
MUC16	94025	broad.mit.edu	37	19	9090511	9090511	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:9090511G>T	uc002mkp.2	-	1	1508	c.1304C>A	c.(1303-1305)ACA>AAA	p.T435K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	435	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCATAGATGTATTCAAAGT	0.483			NA											20	73					1.56452e-12	2.78595e-12	0.007413	1	0
MAST1	22983	broad.mit.edu	37	19	12951814	12951814	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:12951814C>G	uc002mvm.2	+	3	310	c.182C>G	c.(181-183)CCC>CGC	p.P61R	MAST1_uc002mvk.2_Missense_Mutation_p.P57R|MAST1_uc002mvl.2_Missense_Mutation_p.P61R	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	61					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GGCAGCAGTCCCCTGGACAGC	0.602			NA											7	74					0	0	0.001984	0	0
ZNF208	7757	broad.mit.edu	37	19	22156079	22156079	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:22156079C>A	uc002nqp.2	-	5	1606	c.1457G>T	c.(1456-1458)TGT>TTT	p.C486F	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				AGCTTTGCCACATTCTTCACA	0.348			NA											6	20					5.9392e-07	8.4018e-07	0.001168	1	0
SIPA1L3	23094	broad.mit.edu	37	19	38621383	38621383	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:38621383C>A	uc002ohk.2	+	10	3623	c.3114C>A	c.(3112-3114)ATC>ATA	p.I1038I		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	1038	PDZ.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TGGTCATCATCCCGCCTTTTG	0.627			NA											10	38					1.58986e-06	2.15881e-06	0.008291	1	0
KCNK6	9424	broad.mit.edu	37	19	38817960	38817960	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:38817960G>T	uc002oic.2	+	3	969	c.859G>T	c.(859-861)GTG>TTG	p.V287L	KCNK6_uc002oid.2_Missense_Mutation_p.V153L	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	287	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	GGACGATCGGGTGGACATCCT	0.667			NA											9	45					0.000673444	0.000774556	0.008291	1	0
PAK4	10298	broad.mit.edu	37	19	39660361	39660361	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:39660361C>T	uc002okj.1	+	4	629	c.168C>T	c.(166-168)CCC>CCT	p.P56P	PAK4_uc002okl.1_Silent_p.P56P|PAK4_uc002okn.1_Silent_p.P56P|PAK4_uc002okm.1_Silent_p.P56P|PAK4_uc002oko.1_Silent_p.P56P|PAK4_uc002okp.1_Silent_p.P56P	NM_001014831	NP_001014831	O96013	PAK4_HUMAN	p21-activated kinase 4 isoform 1	56	Linker.				cellular component movement|signal transduction	Golgi apparatus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(3)|ovary(1)	4	all_cancers(60;1.03e-07)|all_epithelial(25;9.66e-08)|all_lung(34;1.58e-07)|Lung NSC(34;1.88e-07)|Ovarian(47;0.0454)		Epithelial(26;4.82e-25)|all cancers(26;2.94e-22)|Lung(45;0.000797)|LUSC - Lung squamous cell carcinoma(53;0.00113)			TCGTCGACCCCGCCTGCATCA	0.711			NA											9	23					0	0	0.008291	0	0
IL29	282618	broad.mit.edu	37	19	39788642	39788642	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:39788642C>A	uc002okv.2	+	3	385	c.288C>A	c.(286-288)GCC>GCA	p.A96A		NM_172140	NP_742152	Q8IU54	IL29_HUMAN	interleukin 29 precursor	96					defense response to virus|negative regulation of cell proliferation|negative regulation of interleukin-13 production|negative regulation of interleukin-5 production|negative regulation of memory T cell differentiation|negative regulation of transcription, DNA-dependent|negative regulation of type 2 immune response|positive regulation of immune response|positive regulation of interferon-gamma production|positive regulation of MHC class I biosynthetic process|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of STAT protein	extracellular space|interleukin-28 receptor complex	cytokine activity|interleukin-28 receptor binding				0	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;1.96e-27)|all cancers(26;2.05e-24)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			CTGAGCTGGCCCTGACGCTGA	0.642			NA											5	48					8.12818e-05	9.76344e-05	0.001984	1	0
SPTBN4	57731	broad.mit.edu	37	19	41063082	41063082	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:41063082G>A	uc002ony.2	+	26	5529	c.5443G>A	c.(5443-5445)GCC>ACC	p.A1815T	SPTBN4_uc002onx.2_Missense_Mutation_p.A1815T|SPTBN4_uc002onz.2_Missense_Mutation_p.A1815T|SPTBN4_uc010egx.2_Missense_Mutation_p.A558T|SPTBN4_uc002ooa.2_Missense_Mutation_p.A491T	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	1815	Spectrin 15.				actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			ACTGAACGAGGCCTGGGCTGA	0.632			NA											6	25					0	0	0.00308	0	0
RASIP1	54922	broad.mit.edu	37	19	49243435	49243435	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:49243435C>T	uc002pki.2	-	2	302	c.105G>A	c.(103-105)CTG>CTA	p.L35L		NM_017805	NP_060275	Q5U651	RAIN_HUMAN	Ras-interacting protein 1	35					signal transduction	Golgi stack|perinuclear region of cytoplasm				pancreas(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;9.98e-05)|all cancers(93;0.000272)|Epithelial(262;0.0155)|GBM - Glioblastoma multiforme(486;0.0222)		AGCGCCGCCCCAGCTTCGCCA	0.647			NA											6	52					0	0	0.00308	0	0
SYT3	84258	broad.mit.edu	37	19	51135639	51135639	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:51135639C>A	uc002pst.2	-	2	1212	c.578G>T	c.(577-579)GGA>GTA	p.G193V	SYT3_uc002psv.2_Missense_Mutation_p.G193V|SYT3_uc010ycd.1_Missense_Mutation_p.G193V	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	193	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity	p.G193R(1)		ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		AGAGCCTGCTCCCCCCTCAGA	0.637			NA											8	38					1.06961e-07	1.57342e-07	0.00308	1	0
SIGLEC8	27181	broad.mit.edu	37	19	51960764	51960764	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:51960764C>A	uc002pwt.2	-	2	751	c.684G>T	c.(682-684)TTG>TTT	p.L228F	SIGLEC8_uc010yda.1_Intron|SIGLEC8_uc002pwu.2_RNA|SIGLEC8_uc010eox.2_Intron	NM_014442	NP_055257	Q9NYZ4	SIGL8_HUMAN	sialic acid binding Ig-like lectin 8 precursor	228	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding|transmembrane receptor activity			ovary(2)|kidney(1)|central_nervous_system(1)|skin(1)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000627)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		CTGTCCCAGGCAAGGTCACCT	0.647			NA											5	15					5.9392e-07	8.4018e-07	0.001168	1	0
SIGLEC14	100049587	broad.mit.edu	37	19	52149086	52149086	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:52149086G>A	uc002pxf.3	-	3	769	c.649C>T	c.(649-651)CGC>TGC	p.R217C		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	217	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		GCTCCTTGGCGTTTCACCTGA	0.642			NA											10	46					0	0	0.008291	0	0
ZNF534	147658	broad.mit.edu	37	19	52941035	52941035	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:52941035C>T	uc002pzk.2	+	4	422	c.361C>T	c.(361-363)CAA>TAA	p.Q121*	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Nonsense_Mutation_p.Q108*	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	121					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ACTTAAAAATCAACATGGATT	0.353			NA											4	34					0	0	0.000602	0	0
ZNF347	84671	broad.mit.edu	37	19	53643937	53643937	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:53643937C>A	uc002qbb.1	-	5	2213	c.2144G>T	c.(2143-2145)GGG>GTG	p.G715V	ZNF347_uc010eql.1_Missense_Mutation_p.G716V|ZNF347_uc002qbc.1_Missense_Mutation_p.G716V	NM_032584	NP_115973	Q96SE7	ZN347_HUMAN	zinc finger protein 347	715	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.0179)		AAAGGCTTTCCCACACTGATT	0.428	Melanoma(64;205 1597 17324 45721)		NA											20	141					7.41877e-09	1.14092e-08	0.012319	1	0
LILRA4	23547	broad.mit.edu	37	19	54849250	54849250	+	Nonsense_Mutation	SNP	G	G	T	rs149766788	byFrequency	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:54849250G>T	uc002qfj.2	-	4	669	c.612C>A	c.(610-612)TAC>TAA	p.Y204*	LILRA4_uc002qfi.2_Nonsense_Mutation_p.Y138*	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	204	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CCGACCACACGTATGGGGTGT	0.552			NA											8	44					0.00621372	0.00681829	0.006214	1	0
LILRA2	11027	broad.mit.edu	37	19	55086241	55086241	+	Silent	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:55086241G>C	uc002qgg.3	+	4	485	c.396G>C	c.(394-396)GTG>GTC	p.V132V	LILRA2_uc010ern.2_Silent_p.V132V|LILRA2_uc002qgf.2_Silent_p.V132V|LILRA2_uc010yfe.1_Silent_p.V132V|LILRA2_uc010yff.1_Silent_p.V120V|LILRA2_uc010ero.2_Silent_p.V120V|LILRA2_uc010yfg.1_Silent_p.V132V	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	132	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CCAGCCCTGTGGTGACCTTAG	0.562			NA											22	79					0	0	0.004656	0	0
LILRA1	11024	broad.mit.edu	37	19	55107774	55107774	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:55107774C>A	uc002qgh.1	+	7	1261	c.1079C>A	c.(1078-1080)GCG>GAG	p.A360E	LILRA2_uc010yfg.1_Missense_Mutation_p.A358E|LILRA1_uc010yfh.1_Missense_Mutation_p.A360E	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	360	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		CTGACCAAGGCGGGAGCAGCT	0.587			NA											14	60					2.31682e-05	2.93947e-05	0.003163	1	0
LILRB4	11006	broad.mit.edu	37	19	55175419	55175419	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:55175419C>A	uc002qgp.2	+	3	640	c.278C>A	c.(277-279)GCA>GAA	p.A93E	LILRB4_uc002qgo.1_Missense_Mutation_p.A134E|LILRB4_uc002qgq.2_Missense_Mutation_p.A93E|LILRB4_uc010ers.1_Missense_Mutation_p.A6E|LILRB4_uc002qgr.2_Missense_Mutation_p.A134E|LILRB4_uc010ert.2_Missense_Mutation_p.A134E|LILRB4_uc010eru.2_Missense_Mutation_p.A122E	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	93	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GAGGACTATGCAGGGAGATAC	0.577			NA											24	173					5.62743e-28	1.17166e-27	0.007291	1	0
BRSK1	84446	broad.mit.edu	37	19	55805585	55805585	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:55805585C>A	uc002qkg.2	+	6	856	c.579C>A	c.(577-579)TCC>TCA	p.S193S	BRSK1_uc002qkf.2_Silent_p.S209S	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	193	Protein kinase.				establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		CCCTCAGGTCCCCCCATTATG	0.622			NA											16	81					6.94344e-10	1.12312e-09	0.006122	1	0
ZSCAN5B	342933	broad.mit.edu	37	19	56701647	56701647	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:56701647C>T	uc010ygh.1	-	4	1037	c.1037G>A	c.(1036-1038)GGC>GAC	p.G346D		NM_001080456	NP_001073925	A6NJL1	ZSA5B_HUMAN	zinc finger and SCAN domain containing 5B	346					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						GGCTTCTTGGCCATCTGGGTG	0.547			NA											17	94					0	0	0.007413	0	0
ZNF805	390980	broad.mit.edu	37	19	57765064	57765064	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:57765064G>T	uc010ygt.1	+	4	1084	c.877G>T	c.(877-879)GGA>TGA	p.G293*	ZNF805_uc010ygu.1_Nonsense_Mutation_p.G160*	NM_001023563	NP_001018857	Q5CZA5	ZN805_HUMAN	zinc finger protein 805 isoform 1	293	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGTGAATGTGGAAAGGCCTT	0.493			NA											5	27					8.12818e-05	9.76344e-05	0.001984	1	0
ZNF548	147694	broad.mit.edu	37	19	57910758	57910758	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:57910758G>T	uc002qom.2	+	3	1353	c.1103G>T	c.(1102-1104)AGT>ATT	p.S368I	ZNF547_uc002qpm.3_Intron|ZNF548_uc002qon.2_Missense_Mutation_p.S371I	NM_152909	NP_690873	Q8NEK5	ZN548_HUMAN	zinc finger protein 548	368	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TATGAGTGCAGTGTATGTGGG	0.393			NA											8	44					5.18039e-06	6.89587e-06	0.00308	1	0
ZIK1	284307	broad.mit.edu	37	19	58101972	58101972	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:58101972A>G	uc002qpg.2	+	4	890	c.793A>G	c.(793-795)AGG>GGG	p.R265G	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.R210G|ZIK1_uc002qpi.2_Missense_Mutation_p.R252G|ZIK1_uc002qpj.2_Missense_Mutation_p.R162G	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	265					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TACTGGAGAAAGGCCTTGGGA	0.468			NA											5	37					0	0	0.000602	0	0
ZNF551	90233	broad.mit.edu	37	19	58196642	58196642	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr19:58196642G>T	uc002qpw.3	+	2	269	c.46G>T	c.(46-48)GAG>TAG	p.E16*	ZNF551_uc002qpv.3_Intron|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	32	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		TATGACCTTTGAGGATGTGGC	0.493			NA											19	101					1.67942e-08	2.54419e-08	0.006122	1	0
LPIN1	23175	broad.mit.edu	37	2	11922600	11922600	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:11922600G>T	uc010yjn.1	+	8	1397	c.1123G>T	c.(1123-1125)GCA>TCA	p.A375S	LPIN1_uc010yjm.1_Missense_Mutation_p.A460S|LPIN1_uc002rbt.2_Missense_Mutation_p.A375S|LPIN1_uc002rbs.2_Missense_Mutation_p.A411S	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	375					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		AGTCCAGACAGCAAACAAGAC	0.522			NA											9	45					2.17888e-05	2.77312e-05	0.006214	1	0
NBAS	51594	broad.mit.edu	37	2	15358906	15358906	+	Silent	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:15358906G>A	uc002rcc.1	-	48	6449	c.6423C>T	c.(6421-6423)CCC>CCT	p.P2141P	NBAS_uc002rcb.1_Intron|NBAS_uc010exl.1_Silent_p.P1213P|NBAS_uc002rcd.1_Intron	NM_015909	NP_056993	A2RRP1	NBAS_HUMAN	neuroblastoma-amplified protein	2141										ovary(2)|liver(1)|skin(1)	4						CCTGTCTCTGGGGCCAGGAGG	0.343			NA											15	83					0	0	0.00499	0	0
VIT	5212	broad.mit.edu	37	2	37032694	37032694	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:37032694G>T	uc002rpl.2	+	14	1497	c.1276G>T	c.(1276-1278)GAG>TAG	p.E426*	VIT_uc002rpm.2_Nonsense_Mutation_p.E404*|VIT_uc010ezv.2_Nonsense_Mutation_p.E382*|VIT_uc010ezw.2_Nonsense_Mutation_p.E383*	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	411	VWFA 1.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				GGACAAAGTGGAGGAGGCTTC	0.498			NA											12	73					3.07112e-06	4.10156e-06	0.010729	1	0
CRIPT	9419	broad.mit.edu	37	2	46851311	46851311	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:46851311C>A	uc002rve.2	+	5	348	c.251C>A	c.(250-252)GCG>GAG	p.A84E		NM_014171	NP_054890	Q9P021	CRIPT_HUMAN	postsynaptic protein CRIPT	84						cell junction|cytoplasm|dendritic spine					0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			GGCATCTGTGCGATGTGTGGA	0.328			NA											21	93					1.55795e-14	2.96961e-14	0.012319	1	0
MSH6	2956	broad.mit.edu	37	2	48026966	48026966	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:48026966G>T	uc002rwd.3	+	4	1996	c.1844G>T	c.(1843-1845)TGT>TTT	p.C615F	MSH6_uc002rwc.2_Missense_Mutation_p.C615F|MSH6_uc010fbj.2_Missense_Mutation_p.C313F|MSH6_uc010yoi.1_Missense_Mutation_p.C485F|MSH6_uc010yoj.1_Missense_Mutation_p.C313F	NM_000179	NP_000170	P52701	MSH6_HUMAN	mutS homolog 6	615					determination of adult lifespan|DNA damage response, signal transduction resulting in induction of apoptosis|isotype switching|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|response to UV|somatic hypermutation of immunoglobulin genes	MutSalpha complex	ATP binding|DNA-dependent ATPase activity|protein binding			large_intestine(53)|central_nervous_system(28)|endometrium(28)|stomach(22)|haematopoietic_and_lymphoid_tissue(9)|lung(7)|skin(6)|urinary_tract(5)|breast(5)|ovary(3)|thyroid(1)|upper_aerodigestive_tract(1)	168		Acute lymphoblastic leukemia(82;0.0299)|all_hematologic(82;0.0358)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			TCATTGTCCTGTTCTCTTCAG	0.393			NA	Mis|N|F|S		colorectal	colorectal|endometrial|ovarian		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				6	124					0.00116845	0.00133631	0.001168	1	0
NAGK	55577	broad.mit.edu	37	2	71303832	71303832	+	Splice_Site	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:71303832G>T	uc002shp.3	+	8	1171	c.765_splice	c.e8+1	p.P255_splice	NAGK_uc010fea.2_Splice_Site|NAGK_uc002shq.3_Splice_Site_p.P106_splice|NAGK_uc002shr.2_Splice_Site_p.P204_splice	NM_017567	NP_060037	Q9UJ70	NAGK_HUMAN	N-Acetylglucosamine kinase						N-acetylglucosamine metabolic process|N-acetylmannosamine metabolic process		ATP binding|N-acetylglucosamine kinase activity|protein binding				0					N-Acetyl-D-glucosamine(DB00141)	GATTGACCCGGTGAGTTGAGG	0.567			NA											3	16					6.4e-05	7.87568e-05	0.004672	1	0
DYSF	8291	broad.mit.edu	37	2	71753445	71753445	+	Silent	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:71753445G>C	uc002sie.2	+	12	1525	c.1149G>C	c.(1147-1149)CTG>CTC	p.L383L	DYSF_uc010feg.2_Silent_p.L414L|DYSF_uc010feh.2_Silent_p.L383L|DYSF_uc002sig.3_Silent_p.L383L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.L383L|DYSF_uc010fef.2_Silent_p.L414L|DYSF_uc010fei.2_Silent_p.L414L|DYSF_uc010fek.2_Silent_p.L415L|DYSF_uc010fej.2_Silent_p.L384L|DYSF_uc010fel.2_Silent_p.L384L|DYSF_uc010feo.2_Silent_p.L415L|DYSF_uc010fem.2_Silent_p.L384L|DYSF_uc010fen.2_Silent_p.L415L|DYSF_uc002sif.2_Silent_p.L384L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	383	Cytoplasmic (Potential).|C2 3.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACTTCTGCCTGAAGGTCTTCC	0.657			NA											28	151					0	0	0.008361	0	0
IL1RL1	9173	broad.mit.edu	37	2	102964500	102964500	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:102964500G>A	uc002tbu.1	+	9	1337	c.1066G>A	c.(1066-1068)GAG>AAG	p.E356K	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	356	Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GTTCTGGATTGAGGCCACTCT	0.363			NA											5	67					0	0	0.001168	0	0
SLC5A7	60482	broad.mit.edu	37	2	108618444	108618444	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:108618444G>T	uc002tdv.2	+	6	965	c.689G>T	c.(688-690)GGA>GTA	p.G230V	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Missense_Mutation_p.G230V|SLC5A7_uc010ywn.1_Missense_Mutation_p.G117V	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	230	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	CCGTGGCTGGGAACTGTTGAC	0.453			NA											11	51					6.42651e-13	1.18062e-12	0.010729	1	0
IL1F9	56300	broad.mit.edu	37	2	113742478	113742478	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:113742478G>A	uc002tio.1	+	5	431	c.362G>A	c.(361-363)CGT>CAT	p.R121H	IL1F9_uc010fkr.1_Missense_Mutation_p.R86H	NM_019618	NP_062564	Q9NZH8	IL36G_HUMAN	interleukin 1 family, member 9	121					cell-cell signaling	extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						CTTTTCTACCGTGCCAAGACT	0.512	Esophageal Squamous(44;715 981 6239 42838 46707)		NA											12	60					0	0	0.003163	0	0
IL1F10	84639	broad.mit.edu	37	2	113832335	113832335	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:113832335C>G	uc002tiu.2	+	4	229	c.154C>G	c.(154-156)CGC>GGC	p.R52G	IL1F10_uc002tiv.2_Missense_Mutation_p.R52G|IL1F10_uc002tiw.2_Missense_Mutation_p.R44G	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	52						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						AGGCTTGGCCCGCACCAAGGT	0.582			NA											8	99					0	0	0.012319	0	0
POTEF	728378	broad.mit.edu	37	2	130872806	130872806	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:130872806T>C	uc010fmh.2	-	4	1017	c.617A>G	c.(616-618)AAG>AGG	p.K206R		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	206	ANK 2.					cell cortex	ATP binding			skin(3)|ovary(2)	5						AGCTGTCCTCTTTTTGTTGTC	0.403			NA											10	80					0	0	0.003163	0	0
POTEF	728378	broad.mit.edu	37	2	130877748	130877748	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:130877748T>A	uc010fmh.2	-	3	741	c.341A>T	c.(340-342)AAG>ATG	p.K114M		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	114						cell cortex	ATP binding			skin(3)|ovary(2)	5						CACCTTGCTCTTGCTGCTCCC	0.597			NA											12	88					0	0	0.003163	0	0
FAM123C	205147	broad.mit.edu	37	2	131519959	131519959	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:131519959C>A	uc002trw.2	+	2	504	c.314C>A	c.(313-315)ACG>AAG	p.T105K	FAM123C_uc010fmv.2_Missense_Mutation_p.T105K|FAM123C_uc010fms.1_Missense_Mutation_p.T105K|FAM123C_uc010fmt.1_Missense_Mutation_p.T105K|FAM123C_uc010fmu.1_Missense_Mutation_p.T105K	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	105										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGCAGGGCCACGGCTGCCACA	0.662			NA											5	13					0.00116845	0.00133631	0.001168	1	0
NCKAP5	344148	broad.mit.edu	37	2	133543133	133543134	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:133543133_133543134GG>TT	uc002ttp.2	-	14	1624_1625	c.1250_1251CC>AA	c.(1249-1251)CCC>CAA	p.P417Q	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	417							protein binding				0						TCACTGATGGGGGTTCAAGTAA	0.411			NA											14	85					0	0	0.004672	0	0
LRP1B	53353	broad.mit.edu	37	2	141533673	141533673	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:141533673G>T	uc002tvj.1	-	33	6466	c.5494C>A	c.(5494-5496)CAG>AAG	p.Q1832K		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1832	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTACCTTGCTGTGCTTCTTTA	0.388	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			11	98					4.68919e-08	6.9993e-08	0.008291	1	0
NEB	4703	broad.mit.edu	37	2	152551035	152551035	+	Splice_Site	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:152551035C>G	uc010fnx.2	-	19	1973	c.1782_splice	c.e19+1	p.D594_splice	NEB_uc010fny.1_Splice_Site_p.D148_splice	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3						muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GCCACACTCACATCGCTGGTG	0.507			NA											3	33					0	0	0.004672	0	0
PRPF40A	55660	broad.mit.edu	37	2	153535966	153535966	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:153535966G>T	uc002tyi.2	-	7	571	c.558C>A	c.(556-558)CCC>CCA	p.P186P	PRPF40A_uc002tyh.3_Silent_p.P159P|PRPF40A_uc010zcd.1_Silent_p.P106P|PRPF40A_uc002tyj.2_Silent_p.P55P|PRPF40A_uc002tyl.1_Silent_p.P186P	NM_017892	NP_060362	O75400	PR40A_HUMAN	formin binding protein 3	186	WW 2.				mRNA processing|RNA splicing	nuclear matrix|nuclear speck	protein binding				0						ATTCCTTCCAGGGGCATTTAG	0.328			NA											5	21					1.23904e-05	1.59193e-05	0.000602	1	0
TBR1	10716	broad.mit.edu	37	2	162274296	162274296	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:162274296G>T	uc002ubw.1	+	2	1104	c.802G>T	c.(802-804)GGA>TGA	p.G268*	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	268	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GAGGTTTCAAGGAGGCAAATG	0.413			NA											12	79					3.07112e-06	4.10156e-06	0.010729	1	0
CHRNA1	1134	broad.mit.edu	37	2	175618297	175618297	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:175618297C>T	uc002ujd.2	-	7	865	c.787G>A	c.(787-789)GTC>ATC	p.V263I	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Missense_Mutation_p.V238I|CHRNA1_uc002ujf.3_Missense_Mutation_p.V238I	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	263	Helical.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGGATGATGACGTTGACGATG	0.577			NA											16	83					0	0	0.006122	0	0
PDE11A	50940	broad.mit.edu	37	2	178528660	178528660	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:178528660G>T	uc002ulq.2	-	19	2898	c.2580C>A	c.(2578-2580)AAC>AAA	p.N860K	PDE11A_uc010zfd.1_Missense_Mutation_p.N51K|PDE11A_uc002ulp.2_Missense_Mutation_p.N416K|PDE11A_uc002ulr.2_Missense_Mutation_p.N610K|PDE11A_uc002uls.1_Missense_Mutation_p.N502K|PDE11A_uc002ult.1_Missense_Mutation_p.N610K|PDE11A_uc002ulu.1_Missense_Mutation_p.N502K	NM_016953	NP_058649	Q9HCR9	PDE11_HUMAN	phosphodiesterase 11A isoform 4	860	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(3)|large_intestine(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.00121)|Epithelial(96;0.00455)|all cancers(119;0.02)			CATCCTTCCGGTTCCGATCAA	0.453			NA							Primary_Pigmented_Nodular_Adrenocortical_Disease_Familial				13	48					1.49906e-05	1.91993e-05	0.00245	1	0
CERKL	375298	broad.mit.edu	37	2	182412572	182412572	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:182412572C>A	uc002unx.2	-	10	1315	c.1214G>T	c.(1213-1215)AGG>ATG	p.R405M	CERKL_uc002uny.2_Missense_Mutation_p.R379M|CERKL_uc010zfm.1_Missense_Mutation_p.R361M|CERKL_uc002unz.2_Missense_Mutation_p.R127M|CERKL_uc002uoa.2_Missense_Mutation_p.R310M|CERKL_uc002uob.2_Missense_Mutation_p.R127M|CERKL_uc002uoc.2_Missense_Mutation_p.R266M|CERKL_uc010frk.2_Intron|CERKL_uc002uod.1_Missense_Mutation_p.R174M|CERKL_uc002unw.2_Translation_Start_Site	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	405					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			TCCCTGTGCCCTCCTAAAAGA	0.393			NA											29	187					7.26314e-15	1.39096e-14	0.007291	1	0
FAM171B	165215	broad.mit.edu	37	2	187615876	187615876	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:187615876A>T	uc002ups.2	+	5	852	c.740A>T	c.(739-741)GAA>GTA	p.E247V	FAM171B_uc002upr.1_Missense_Mutation_p.E247V	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	247	Extracellular (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						GAAAACATTGAATTGACTCCT	0.318			NA											18	126					0	0	0.014323	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187712478	187712479	+	Missense_Mutation	DNP	CG	CG	TT			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:187712478_187712479CG>TT	uc002upu.1	-	2	249_250	c.209_210CG>AA	c.(208-210)CCG>CAA	p.P70Q		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	70	SWIM-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			CCCCTCCTTTCGGAAATGTGGA	0.351			NA											11	93					0	0	0.004672	0	0
COL5A2	1290	broad.mit.edu	37	2	189943287	189943287	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:189943287C>A	uc002uqk.2	-	16	1289	c.1014G>T	c.(1012-1014)AGG>AGT	p.R338S	COL5A2_uc010frx.2_Intron	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	338					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CTGGCATTCCCCTCGGACCCT	0.428			NA											26	148					3.65163e-15	7.05981e-15	0.00632	1	0
BMPR2	659	broad.mit.edu	37	2	203407114	203407114	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:203407114G>T	uc002uzf.3	+	10	2505	c.1357G>T	c.(1357-1359)GTG>TTG	p.V453L	BMPR2_uc010ftr.2_Missense_Mutation_p.V453L	NM_001204	NP_001195	Q13873	BMPR2_HUMAN	bone morphogenetic protein receptor type II	453	Protein kinase.|Cytoplasmic (Potential).				anterior/posterior pattern formation|BMP signaling pathway|cellular response to starvation|lung alveolus development|mesoderm formation|negative regulation of cell growth|negative regulation of systemic arterial blood pressure|negative regulation of vasoconstriction|positive regulation of BMP signaling pathway|positive regulation of bone mineralization|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of epithelial cell migration|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|regulation of lung blood pressure|transcription from RNA polymerase II promoter|vascular endothelial growth factor receptor signaling pathway	integral to plasma membrane	ATP binding|metal ion binding|transforming growth factor beta receptor activity			ovary(4)|breast(2)|large_intestine(1)|stomach(1)|pancreas(1)	9						GCAGGTTCTCGTGTCTAGGGA	0.423			NA											11	62					9.70103e-10	1.55677e-09	0.008291	1	0
VIL1	7429	broad.mit.edu	37	2	219294032	219294032	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:219294032C>T	uc002via.2	+	7	657	c.592C>T	c.(592-594)CGA>TGA	p.R198*	VIL1_uc010zke.1_Intron|VIL1_uc002vib.2_Nonsense_Mutation_p.R198*|VIL1_uc002vic.1_Nonsense_Mutation_p.R198*	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	198	Core.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CAAGGAGATCCGAGACCAGGA	0.622			NA											6	70					0	0	0.004482	0	0
CCDC108	255101	broad.mit.edu	37	2	219890775	219890775	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:219890775T>A	uc002vjl.1	-	14	2402	c.2318A>T	c.(2317-2319)CAC>CTC	p.H773L		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	773						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGGGGGATGTGGTGCTCAAA	0.592			NA											6	45					0	0	0.00308	0	0
DOCK10	55619	broad.mit.edu	37	2	225710297	225710297	+	Silent	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:225710297G>A	uc010fwz.1	-	20	2537	c.2298C>T	c.(2296-2298)CAC>CAT	p.H766H	DOCK10_uc002vob.2_Silent_p.H760H	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	766	DHR-1.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		CACAGGTGACGTGATAAAAAG	0.408			NA											19	81					0	0	0.007413	0	0
GPR55	9290	broad.mit.edu	37	2	231774831	231774831	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:231774831G>T	uc002vrg.2	-	2	1040	c.847C>A	c.(847-849)CTG>ATG	p.L283M	GPR55_uc002vrf.2_RNA|GPR55_uc010fxs.1_Missense_Mutation_p.L283M	NM_005683	NP_005674	Q9Y2T6	GPR55_HUMAN	G protein-coupled receptor 55	283	Helical; Name=7; (Potential).				activation of phospholipase C activity|bone resorption|negative regulation of osteoclast differentiation|positive regulation of ERK1 and ERK2 cascade|positive regulation of Rho protein signal transduction	integral to plasma membrane	cannabinoid receptor activity			ovary(1)	1		Renal(207;0.0112)|all_lung(227;0.0741)|all_hematologic(139;0.0748)|Acute lymphoblastic leukemia(138;0.167)|Lung NSC(271;0.204)		Epithelial(121;1.04e-11)|all cancers(144;4.22e-09)|LUSC - Lung squamous cell carcinoma(224;0.0119)|Lung(119;0.0145)		AAAACATCCAGGCAGCAGTTG	0.507			NA											15	81					3.45872e-05	4.37458e-05	0.004007	1	0
COL6A3	1293	broad.mit.edu	37	2	238274635	238274635	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr2:238274635G>T	uc002vwl.2	-	12	5829	c.5544C>A	c.(5542-5544)GAC>GAA	p.D1848E	COL6A3_uc002vwo.2_Missense_Mutation_p.D1642E|COL6A3_uc010znj.1_Missense_Mutation_p.D1241E	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1848	VWFA 10.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		AAACATTCTGGTCTCTAGAAC	0.527			NA											17	101					1.56452e-12	2.78595e-12	0.007413	1	0
PTPRA	5786	broad.mit.edu	37	20	3018722	3018722	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr20:3018722C>T	uc010zqd.1	+	23	2702	c.2385C>T	c.(2383-2385)TGC>TGT	p.C795C	PTPRA_uc002whj.2_Silent_p.C784C|PTPRA_uc002whk.2_Silent_p.C775C|PTPRA_uc002whl.2_Silent_p.C775C|PTPRA_uc002whm.2_Silent_p.C551C|PTPRA_uc002whn.2_Silent_p.C775C|PTPRA_uc002who.2_Silent_p.C447C	NM_002836	NP_002827	P18433	PTPRA_HUMAN	protein tyrosine phosphatase, receptor type, A	784	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				axon guidance|protein phosphorylation	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)	1						ATGAGTTCTGCTACAAGGTGG	0.428			NA											15	71					0	0	0.00499	0	0
GDAP1L1	78997	broad.mit.edu	37	20	42893134	42893134	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr20:42893134G>T	uc002xlq.2	+	5	762	c.695G>T	c.(694-696)GGG>GTG	p.G232V	GDAP1L1_uc002xlp.1_Missense_Mutation_p.G232V|GDAP1L1_uc010zwl.1_Missense_Mutation_p.G251V|GDAP1L1_uc010zwm.1_Missense_Mutation_p.G174V|GDAP1L1_uc010zwn.1_Missense_Mutation_p.G40V	NM_024034	NP_076939	Q96MZ0	GD1L1_HUMAN	ganglioside-induced differentiation-associated	232	GST C-terminal.									large_intestine(1)	1		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			AAGATCCTCGGGGAACTGGCC	0.607			NA									OREG0006458	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=GDAP1L1|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	5	31					5.9392e-07	8.4018e-07	0.001168	1	0
KCNB1	3745	broad.mit.edu	37	20	47989564	47989564	+	Missense_Mutation	SNP	G	G	T	rs35831424		TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr20:47989564G>T	uc002xur.1	-	2	2697	c.2533C>A	c.(2533-2535)CCA>ACA	p.P845T	KCNB1_uc002xus.1_Missense_Mutation_p.P845T	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	845	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CCTCCCCCTGGCAACACACGG	0.532			NA											4	37					0.00024832	0.000291381	0.009096	1	0
C20orf135	140701	broad.mit.edu	37	20	62493424	62493424	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr20:62493424C>G	uc002ygx.1	+	1	859	c.531C>G	c.(529-531)TGC>TGG	p.C177W		NM_080622	NP_542189	Q9H3Z7	ABHGB_HUMAN	hypothetical protein LOC140701	177							hydrolase activity				0	all_cancers(38;1.77e-12)|all_epithelial(29;3.12e-14)|Lung NSC(23;5.92e-10)|all_lung(23;2.08e-09)					TCATCTGCTGCGAAGGCAACG	0.672			NA											3	11					0	0	0.009096	0	0
MYT1	4661	broad.mit.edu	37	20	62839561	62839561	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr20:62839561C>T	uc002yii.2	+	7	1376	c.1012C>T	c.(1012-1014)CCT>TCT	p.P338S	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	338					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CAGTCCCAAGCCTGAGTACTC	0.552	GBM(59;481 1041 20555 21139 33705)		NA											19	84					0	0	0.010504	0	0
KRTAP8-1	337879	broad.mit.edu	37	21	32185358	32185358	+	Missense_Mutation	SNP	C	C	A	rs140820436	by1000genomes	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr21:32185358C>A	uc002you.2	-	1	213	c.181G>T	c.(181-183)GCT>TCT	p.A61S		NM_175857	NP_787053	Q8IUC2	KRA81_HUMAN	keratin associated protein 8-1	61						intermediate filament					0						CAGTAGAGAGCAAATGGCGAG	0.562			NA											17	52					7.07596e-05	8.67927e-05	0.006122	1	0
GRAP2	9402	broad.mit.edu	37	22	40366981	40366981	+	Nonsense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr22:40366981G>T	uc003ayh.1	+	8	1149	c.886G>T	c.(886-888)GAG>TAG	p.E296*	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Nonsense_Mutation_p.E270*|GRAP2_uc011aon.1_Nonsense_Mutation_p.E230*|GRAP2_uc010gya.1_Nonsense_Mutation_p.E296*|GRAP2_uc011aoo.1_Nonsense_Mutation_p.E224*|GRAP2_uc011aop.1_Nonsense_Mutation_p.E256*|GRAP2_uc011aoq.1_Nonsense_Mutation_p.E183*|GRAP2_uc003ayj.1_Nonsense_Mutation_p.E296*	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	296	SH3 2.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						CCACAGCGGGGAGGTGGTGGA	0.642			NA											10	35					4.68919e-08	6.9993e-08	0.008291	1	0
LRRC3B	116135	broad.mit.edu	37	3	26751340	26751340	+	Silent	SNP	T	T	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:26751340T>G	uc003cdp.2	+	2	766	c.177T>G	c.(175-177)CCT>CCG	p.P59P	LRRC3B_uc003cdq.2_Silent_p.P59P	NM_052953	NP_443185	Q96PB8	LRC3B_HUMAN	leucine rich repeat containing 3B precursor	59	LRRNT.					integral to membrane				pancreas(2)|ovary(1)|skin(1)	4						AGGAAATACCTAGAGATCTTC	0.423			NA											9	42					0	0	0.004482	0	0
TGM4	7047	broad.mit.edu	37	3	44948497	44948497	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:44948497A>G	uc003coc.3	+	10	1205	c.1132A>G	c.(1132-1134)ATT>GTT	p.I378V		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	378					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	TGACATCTTTATTGTCTATGA	0.527			NA											6	64					0	0	0.001168	0	0
OR5K3	403277	broad.mit.edu	37	3	98109906	98109906	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:98109906C>A	uc011bgw.1	+	1	397	c.397C>A	c.(397-399)CAC>AAC	p.H133N		NM_001005516	NP_001005516	A6NET4	OR5K3_HUMAN	olfactory receptor, family 5, subfamily K,	133	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACTGCAGTACCACACCATGAT	0.468			NA											51	84					1.91693e-13	3.57006e-13	0.01441	1	0
CPNE4	131034	broad.mit.edu	37	3	131404802	131404802	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:131404802C>A	uc003eok.2	-	6	943	c.508G>T	c.(508-510)GAT>TAT	p.D170Y	CPNE4_uc011blq.1_Missense_Mutation_p.D188Y|CPNE4_uc003eol.2_Missense_Mutation_p.D188Y|CPNE4_uc003eom.2_Missense_Mutation_p.D170Y	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	170	C2 2.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CTGAAGAAATCCTAAAATAGA	0.373			NA											14	29					9.31168e-06	1.23145e-05	0.001855	1	0
AADACL2	344752	broad.mit.edu	37	3	151474791	151474791	+	Silent	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:151474791T>C	uc003ezc.2	+	5	735	c.615T>C	c.(613-615)GAT>GAC	p.D205D	AADACL2_uc010hvn.2_5'UTR	NM_207365	NP_997248	Q6P093	ADCL2_HUMAN	arylacetamide deacetylase-like 2 precursor	205						extracellular region|integral to membrane	carboxylesterase activity				0			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)			TGCAGAATGATGCTGAAATAA	0.313			NA											28	40					0	0	0.009535	0	0
ABCC5	10057	broad.mit.edu	37	3	183689508	183689508	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:183689508C>A	uc003fmg.2	-	11	1769	c.1604G>T	c.(1603-1605)CGC>CTC	p.R535L	ABCC5_uc011bqt.1_Missense_Mutation_p.R63L|ABCC5_uc010hxl.2_Missense_Mutation_p.R535L	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	535						integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			ATGCTCAGTGCGCTGCAGCTG	0.582			NA											16	38					2.4624e-09	3.89001e-09	0.008871	1	0
UBXN7	26043	broad.mit.edu	37	3	196089416	196089416	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr3:196089416C>A	uc003fwm.3	-	9	1052	c.977G>T	c.(976-978)AGT>ATT	p.S326I	UBXN7_uc003fwn.3_Missense_Mutation_p.S178I|UBXN7_uc010iae.2_Missense_Mutation_p.S164I	NM_015562	NP_056377	O94888	UBXN7_HUMAN	UBX domain containing 7	326							protein binding			ovary(2)|pancreas(1)	3						GAACTCCTCACTGCCAGAAAA	0.428			NA											47	104					2.52991e-16	4.96204e-16	0.01441	1	0
GBA3	57733	broad.mit.edu	37	4	22749245	22749245	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:22749245T>C	uc003gqp.3	+	3	704	c.613T>C	c.(613-615)TGG>CGG	p.W205R	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.W206R	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	205					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TGCCAGATCCTGGCACAGCTA	0.453			NA											26	115					0	0	0.005443	0	0
ATP8A1	10396	broad.mit.edu	37	4	42554575	42554575	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:42554575G>C	uc003gwr.2	-	17	1698	c.1466C>G	c.(1465-1467)ACA>AGA	p.T489R	ATP8A1_uc003gws.2_Missense_Mutation_p.T474R|ATP8A1_uc011byz.1_Missense_Mutation_p.T474R	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	489	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TGGCACTGCTGTGTGACAGAC	0.363			NA											11	68					0	0	0.001855	0	0
EPHA5	2044	broad.mit.edu	37	4	66201737	66201737	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:66201737C>A	uc003hcy.2	-	16	2958	c.2765G>T	c.(2764-2766)AGG>ATG	p.R922M	EPHA5_uc003hcx.2_Missense_Mutation_p.R854M|EPHA5_uc003hcz.2_Missense_Mutation_p.R900M|EPHA5_uc011cah.1_Missense_Mutation_p.R923M|EPHA5_uc011cai.1_Missense_Mutation_p.R901M|EPHA5_uc003hda.2_Missense_Mutation_p.R923M	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	922	Cytoplasmic (Potential).|Protein kinase.				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						AAACTTGGGCCTGCTATTTCG	0.483			NA								TSP Lung(17;0.13)			9	46					7.48243e-07	1.04754e-06	0.006214	1	0
UGT2B7	7364	broad.mit.edu	37	4	69962328	69962328	+	Silent	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:69962328A>T	uc003heg.3	+	1	136	c.90A>T	c.(88-90)GCA>GCT	p.A30A	UGT2B7_uc010ihq.2_Silent_p.A30A	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	30					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						TGGTGTGGGCAGCAGAATACA	0.428			NA											16	99					0	0	0.006122	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406416	106406416	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:106406416T>C	uc003hxt.1	+	1	554	c.424T>C	c.(424-426)TTT>CTT	p.F142L		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						CACAGTAGCATTTGTGCCAGT	0.468			NA											3	36					0	0	0.000602	0	0
ELF2	1998	broad.mit.edu	37	4	139980359	139980359	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:139980359C>A	uc003ihp.1	-	9	1730	c.1524G>T	c.(1522-1524)CAG>CAT	p.Q508H	ELF2_uc003ihm.1_Missense_Mutation_p.Q460H|ELF2_uc003ihn.1_Missense_Mutation_p.Q448H|ELF2_uc003iho.1_Missense_Mutation_p.Q431H|ELF2_uc011chc.1_Missense_Mutation_p.Q323H	NM_201999	NP_973728	Q15723	ELF2_HUMAN	E74-like factor 2 (ets domain transcription	520					negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2	all_hematologic(180;0.162)					GAGGAGGAGTCTGGCCAGATG	0.478			NA											24	104					2.89027e-11	4.90983e-11	0.014323	1	0
RXFP1	59350	broad.mit.edu	37	4	159568062	159568062	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:159568062G>A	uc003ipz.2	+	16	1547	c.1465G>A	c.(1465-1467)GGA>AGA	p.G489R	RXFP1_uc011cja.1_Missense_Mutation_p.G384R|RXFP1_uc010iqo.2_Missense_Mutation_p.G441R|RXFP1_uc011cjb.1_Missense_Mutation_p.G387R|RXFP1_uc010iqk.2_Missense_Mutation_p.G357R|RXFP1_uc011cjc.1_Missense_Mutation_p.G408R|RXFP1_uc011cjd.1_Missense_Mutation_p.G408R|RXFP1_uc010iql.2_Missense_Mutation_p.G333R|RXFP1_uc011cje.1_Missense_Mutation_p.G516R|RXFP1_uc010iqm.2_Missense_Mutation_p.G456R|RXFP1_uc011cjf.1_Missense_Mutation_p.G358R|RXFP1_uc010iqn.2_Missense_Mutation_p.G434R	NM_021634	NP_067647	Q9HBX9	RXFP1_HUMAN	relaxin/insulin-like family peptide receptor 1	489	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|metal ion binding				0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0219)		TCAGCTTGTAGGATCTTTGGC	0.388			NA											11	92					0	0	0.010729	0	0
FRG1	2483	broad.mit.edu	37	4	190883020	190883020	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:190883020A>G	uc003izs.2	+	8	864	c.673A>G	c.(673-675)AAA>GAA	p.K225E		NM_004477	NP_004468	Q14331	FRG1_HUMAN	FSHD region gene 1	225					rRNA processing	Cajal body|catalytic step 2 spliceosome|nuclear speck|nucleolus					0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;1.73e-30)|Epithelial(3;5.85e-30)|OV - Ovarian serous cystadenocarcinoma(60;5.56e-15)|BRCA - Breast invasive adenocarcinoma(30;9.14e-06)|Lung(3;3.54e-05)|STAD - Stomach adenocarcinoma(60;8.83e-05)|LUSC - Lung squamous cell carcinoma(40;0.000198)|GBM - Glioblastoma multiforme(59;0.00892)|READ - Rectum adenocarcinoma(43;0.161)		TAAAATAAGTAAAGAAGACAG	0.308			NA											22	203					0	0	0.003954	0	0
TRIP13	9319	broad.mit.edu	37	5	908506	908506	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:908506G>T	uc003jbr.2	+	9	906	c.796G>T	c.(796-798)GCG>TCG	p.A266S	TRIP13_uc010ite.1_Missense_Mutation_p.A266S	NM_004237	NP_004228	Q15645	PCH2_HUMAN	thyroid hormone receptor interactor 13	266					double-strand break repair|reciprocal meiotic recombination|synaptonemal complex assembly|transcription from RNA polymerase II promoter		ATP binding|identical protein binding|nucleoside-triphosphatase activity|transcription cofactor activity				0			Epithelial(17;0.00147)|OV - Ovarian serous cystadenocarcinoma(19;0.00271)|all cancers(22;0.00622)|Lung(60;0.165)			TGCCTGCAGGGCGGGCACCGA	0.562			NA											8	44					1.12685e-05	1.47107e-05	0.004482	1	0
CTNND2	1501	broad.mit.edu	37	5	11364898	11364898	+	Missense_Mutation	SNP	C	C	T	rs148824970	byFrequency	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:11364898C>T	uc003jfa.1	-	8	1427	c.1282G>A	c.(1282-1284)GTC>ATC	p.V428I	CTNND2_uc010itt.2_Missense_Mutation_p.V337I|CTNND2_uc011cmy.1_Missense_Mutation_p.V91I|CTNND2_uc011cmz.1_5'UTR|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_5'UTR	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	428	ARM 1.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						TTCTGATAGACGCGGTCTTCA	0.617			NA											4	38					0	0	0.009096	0	0
DNAH5	1767	broad.mit.edu	37	5	13786382	13786382	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:13786382C>A	uc003jfd.2	-	52	8768	c.8726G>T	c.(8725-8727)CGT>CTT	p.R2909L		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2909					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CATATTCAGACGCTCTTTTAG	0.433			NA							Kartagener_syndrome				12	49					3.07112e-06	4.10156e-06	0.010729	1	0
CDH10	1008	broad.mit.edu	37	5	24509704	24509704	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:24509704C>A	uc003jgr.1	-	7	1559	c.1227G>T	c.(1225-1227)AGG>AGT	p.R409S	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	409	Cadherin 4.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AATCTGGGTCCCTTGCCATTA	0.313			NA								HNSCC(23;0.051)			15	63					6.49762e-13	1.18297e-12	0.006122	1	0
CDH6	1004	broad.mit.edu	37	5	31294067	31294067	+	Splice_Site	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:31294067A>T	uc003jhe.1	+	3	555	c.229_splice	c.e3-2	p.L77_splice	CDH6_uc003jhd.1_Splice_Site_p.L77_splice	NM_004932	NP_004923	P55285	CADH6_HUMAN	cadherin 6, type 2 preproprotein						adherens junction organization|cell junction assembly|homophilic cell adhesion	cytoplasm|integral to membrane|nucleus|plasma membrane	calcium ion binding			ovary(4)|skin(2)|large_intestine(1)	7						TTTCTACACTAGTTACATTCA	0.328			NA											6	71					0	0	0.001984	0	0
SPEF2	79925	broad.mit.edu	37	5	35753776	35753776	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:35753776G>T	uc003jjo.2	+	24	3492	c.3381G>T	c.(3379-3381)GCG>GCT	p.A1127A	SPEF2_uc003jjp.1_Silent_p.A613A	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1127					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGGAAGAGGCGGAGCAGGAGC	0.493			NA											22	114					1.22574e-08	1.87086e-08	0.014323	1	0
SNX18	112574	broad.mit.edu	37	5	53815085	53815085	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:53815085A>T	uc003jpj.3	+	1	1493	c.1303A>T	c.(1303-1305)ACC>TCC	p.T435S	SNX18_uc011cqg.1_Missense_Mutation_p.T435S|SNX18_uc003jpi.3_Missense_Mutation_p.T435S	NM_052870	NP_443102	Q96RF0	SNX18_HUMAN	sorting nexin 18 isoform b	435	BAR.				cell communication|endocytosis|positive regulation of GTPase activity|protein transport	endomembrane system|endosome membrane|extrinsic to internal side of plasma membrane	phosphatidylinositol binding|protein binding				0		Lung NSC(810;3.46e-05)|Breast(144;0.102)				CAAGTGCTTCACCAAGAAGAT	0.607			NA											4	35					0	0	0.009096	0	0
IL31RA	133396	broad.mit.edu	37	5	55168177	55168177	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:55168177C>A	uc003jql.2	+	4	417	c.352C>A	c.(352-354)CCA>ACA	p.P118T	IL31RA_uc003jqk.2_Missense_Mutation_p.P118T|IL31RA_uc011cqj.1_5'UTR|IL31RA_uc003jqm.2_Missense_Mutation_p.P86T|IL31RA_uc003jqn.2_Missense_Mutation_p.P118T|IL31RA_uc010iwa.1_Missense_Mutation_p.P86T|IL31RA_uc003jqo.2_5'UTR	NM_139017	NP_620586	Q8NI17	IL31R_HUMAN	gp130-like monocyte receptor	86	Extracellular (Potential).|Fibronectin type-III 1.				anti-apoptosis|defense response|homeostatic process|JAK-STAT cascade|macrophage differentiation|MAPKKK cascade|monocyte differentiation|negative regulation of macrophage activation|positive regulation of cell proliferation|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|transmembrane receptor protein tyrosine kinase signaling pathway	integral to membrane|plasma membrane	cytokine receptor activity|protein kinase binding|transcription coactivator activity			ovary(1)	1		Lung NSC(810;6.93e-05)|Prostate(74;0.00741)|Breast(144;0.0544)|Ovarian(174;0.223)				TTTTTTCCTTCCAAGAATAAC	0.348			NA											18	63					9.16793e-09	1.4046e-08	0.00499	1	0
FTMT	94033	broad.mit.edu	37	5	121187725	121187725	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:121187725C>T	uc003kss.2	+	1	76	c.67C>T	c.(67-69)CGC>TGC	p.R23C		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	23					cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		GCGCCCGGTGCGCTGCTGCTT	0.731			NA											5	10					0	0	0.001168	0	0
SLC23A1	9963	broad.mit.edu	37	5	138713677	138713677	+	Silent	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:138713677G>T	uc003leh.2	-	12	1537	c.1440C>A	c.(1438-1440)GGC>GGA	p.G480G	SLC23A1_uc003leg.2_Silent_p.G484G	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	480					brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	TATTGATGGCGCCAGGGTTGG	0.547			NA											3	13					6.4e-05	7.87568e-05	0.004672	1	0
UBE2D2	7322	broad.mit.edu	37	5	138994325	138994325	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:138994325A>G	uc003ler.2	+	4	790	c.164A>G	c.(163-165)CAT>CGT	p.H55R	UBE2D2_uc003leq.2_Missense_Mutation_p.H26R	NM_003339	NP_003330	P62837	UB2D2_HUMAN	ubiquitin-conjugating enzyme E2D 2 isoform 1	55					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process		ATP binding|protein binding|ubiquitin-protein ligase activity			central_nervous_system(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TTGACAATTCATTTCCCAACA	0.313			NA											16	56					0	0	0.007413	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140753949	140753949	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:140753949C>A	uc003ljy.1	+	1	299	c.299C>A	c.(298-300)CCG>CAG	p.P100Q	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P100Q	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	100	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCAGAGCCCGCGGTGTCTG	0.512			NA											13	57					0.00010058	0.000119752	0.013537	1	0
C5orf25	375484	broad.mit.edu	37	5	175716732	175716732	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:175716732A>G	uc003mds.3	+	4	555	c.148A>G	c.(148-150)AGA>GGA	p.R50G	C5orf25_uc003mdt.3_Intron|C5orf25_uc003mdr.3_Intron|C5orf25_uc011dfk.1_Missense_Mutation_p.R69G|uc003mdu.1_5'UTR			Q8NDZ2	CE025_HUMAN	RecName: Full=Uncharacterized protein C5orf25;	50											0	all_cancers(89;0.00381)|Renal(175;0.000269)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.119)		TGACCTGACAAGAGCTGAGGG	0.448			NA											5	14					0	0	0.000602	0	0
DBN1	1627	broad.mit.edu	37	5	176887645	176887645	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:176887645C>T	uc003mgy.2	-	9	1003	c.831G>A	c.(829-831)GAG>GAA	p.E277E	DBN1_uc011dga.1_Silent_p.E9E|DBN1_uc003mgx.2_Silent_p.E279E|DBN1_uc010jkn.1_Silent_p.E227E|DBN1_uc003mgz.1_Silent_p.E214E	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	277					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGCTCTCACCTCCACCTCCG	0.607			NA											5	39					0	0	0.001168	0	0
DUSP22	56940	broad.mit.edu	37	6	348145	348145	+	Silent	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:348145C>T	uc003msx.2	+	6	745	c.306C>T	c.(304-306)TAC>TAT	p.Y102Y	DUSP22_uc011dhn.1_Silent_p.Y102Y|DUSP22_uc003msy.1_Silent_p.Y59Y	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	102	Tyrosine-protein phosphatase.				apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		TGATCGCATACATCATGACCG	0.612			NA											12	134					0	0	0.001855	0	0
BMP6	654	broad.mit.edu	37	6	7727541	7727541	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:7727541A>T	uc003mxu.3	+	1	531	c.353A>T	c.(352-354)CAG>CTG	p.Q118L		NM_001718	NP_001709	P22004	BMP6_HUMAN	bone morphogenetic protein 6 preproprotein	118					BMP signaling pathway|cartilage development|growth|immune response|positive regulation of aldosterone biosynthetic process|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription from RNA polymerase II promoter|SMAD protein signal transduction	extracellular space	BMP receptor binding|cytokine activity|growth factor activity|protein heterodimerization activity			large_intestine(2)|ovary(1)	3	Ovarian(93;0.0721)					cagcagcagcagcTGCCTCGC	0.622			NA											3	14					0	0	0.004672	0	0
DAXX	1616	broad.mit.edu	37	6	33287401	33287401	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:33287401G>A	uc003oec.2	-	6	1900	c.1696C>T	c.(1696-1698)CTC>TTC	p.L566F	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Missense_Mutation_p.L491F|DAXX_uc011dre.1_Missense_Mutation_p.L578F|DAXX_uc003oed.2_Missense_Mutation_p.L566F	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	566	Asp/Glu-rich (acidic).|Interaction with MAP3K5.|Necessary for interaction with USP7.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						AGCTCAAAGAGCTGAGACACA	0.542			NA	Mis|F|N		Pancreatic neuroendocrine tumors								31	65					0	0	0.008361	0	0
PNPLA1	285848	broad.mit.edu	37	6	36274107	36274107	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:36274107G>T	uc010jwf.2	+	7	1423	c.1423G>T	c.(1423-1425)GTG>TTG	p.V475L	PNPLA1_uc003olw.1_Missense_Mutation_p.V380L|PNPLA1_uc010jwe.1_Missense_Mutation_p.V389L	NM_001145717	NP_001139189	Q8N8W4	PLPL1_HUMAN	patatin-like phospholipase domain containing 1	475					lipid catabolic process		hydrolase activity			large_intestine(1)|pancreas(1)|breast(1)|skin(1)	4						AAAAAGCGCCGTGCCTCTGGT	0.478			NA											28	120					1.39649e-27	2.87804e-27	0.012213	1	0
XPO5	57510	broad.mit.edu	37	6	43538667	43538667	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:43538667T>A	uc003ovp.2	-	4	576	c.365A>T	c.(364-366)GAA>GTA	p.E122V		NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	122					gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			CTTGATCATTTCCACTACAAT	0.398			NA											43	97					0	0	0.009718	0	0
RHAG	6005	broad.mit.edu	37	6	49586929	49586929	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:49586929G>T	uc003ozk.3	-	2	366	c.304C>A	c.(304-306)CAA>AAA	p.Q102K	RHAG_uc010jzl.2_Missense_Mutation_p.Q102K|RHAG_uc010jzm.2_Missense_Mutation_p.Q102K	NM_000324	NP_000315	Q02094	RHAG_HUMAN	Rh-associated glycoprotein	102	Extracellular (Potential).				carbon dioxide transport|cellular ion homeostasis	integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			breast(1)|skin(1)	2	Lung NSC(77;0.0255)					CCCTGGCTTTGCAGGATTCCC	0.348	Ovarian(176;476 2003 7720 43408 44749)		NA											14	47					4.7546e-09	7.4245e-09	0.004007	1	0
C6orf221	154288	broad.mit.edu	37	6	74073549	74073549	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:74073549G>T	uc003pgt.3	+	3	673	c.620G>T	c.(619-621)CGC>CTC	p.R207L		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	207										skin(2)	2						CAGCGGTTTCGCGAGGATGCC	0.622			NA											8	29					3.09899e-07	4.47754e-07	0.004482	1	0
ZNF292	23036	broad.mit.edu	37	6	87967002	87967002	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:87967002G>T	uc003plm.3	+	8	3696	c.3655G>T	c.(3655-3657)GAT>TAT	p.D1219Y		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	1219					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AACTTCTCAGGATAAAAATGA	0.398			NA											11	15					1.58986e-06	2.15881e-06	0.008291	1	0
BCLAF1	9774	broad.mit.edu	37	6	136597526	136597526	+	Silent	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:136597526T>C	uc003qgx.1	-	5	1390	c.1137A>G	c.(1135-1137)GAA>GAG	p.E379E	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Silent_p.E377E|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Silent_p.E377E	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	379					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AATCTAGAGCTTCCTGATCTT	0.428	Colon(142;1534 1789 5427 7063 28491)		NA											37	472					0	0	0.00623	0	0
ABCB5	340273	broad.mit.edu	37	7	20739552	20739552	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:20739552G>T	uc003suw.3	+	9	1470	c.924G>T	c.(922-924)CAG>CAT	p.Q308H	ABCB5_uc010kuh.2_Missense_Mutation_p.Q753H	NM_178559	NP_848654	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	308	Helical; (Potential).|ABC transmembrane type-1.				regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						ATTTCATGCAGGTAAGCTTTT	0.289			NA											6	32					0.00198382	0.00223731	0.001984	1	0
HOXA1	3198	broad.mit.edu	37	7	27135409	27135409	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:27135409C>A	uc003sye.2	-	1	217	c.123G>T	c.(121-123)GCG>GCT	p.A41A	HOXA1_uc003syd.2_Silent_p.A41A|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	41						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						TGGCGCTGACCGCGCACGACT	0.532			NA									OREG0003750	type=REGULATORY REGION|Gene=BC031342|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	8	39					7.48243e-07	1.04754e-06	0.006214	1	0
PSPH	5723	broad.mit.edu	37	7	56087349	56087349	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:56087349C>A	uc003trg.2	-	4	582	c.219G>T	c.(217-219)AGG>AGT	p.R73S	PSPH_uc003trh.2_Missense_Mutation_p.R73S|PSPH_uc003tri.2_Missense_Mutation_p.R73S|PSPH_uc003trj.2_Missense_Mutation_p.R102S	NM_004577	NP_004568	P78330	SERB_HUMAN	phosphoserine phosphatase	73					L-serine biosynthetic process	cytoplasm	calcium ion binding|magnesium ion binding|phosphoserine phosphatase activity|protein homodimerization activity			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GCACCTGCTCCCTGGAGGGCT	0.607			NA											5	32					1.23904e-05	1.59193e-05	0.000602	1	0
PSPH	5723	broad.mit.edu	37	7	56087351	56087351	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:56087351T>A	uc003trg.2	-	4	580	c.217A>T	c.(217-219)AGG>TGG	p.R73W	PSPH_uc003trh.2_Missense_Mutation_p.R73W|PSPH_uc003tri.2_Missense_Mutation_p.R73W|PSPH_uc003trj.2_Missense_Mutation_p.R102W	NM_004577	NP_004568	P78330	SERB_HUMAN	phosphoserine phosphatase	73					L-serine biosynthetic process	cytoplasm	calcium ion binding|magnesium ion binding|phosphoserine phosphatase activity|protein homodimerization activity			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ACCTGCTCCCTGGAGGGCTGG	0.607			NA											5	31					0	0	0.000602	0	0
ZNF479	90827	broad.mit.edu	37	7	57188426	57188426	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:57188426T>A	uc010kzo.2	-	5	967	c.696A>T	c.(694-696)AAA>AAT	p.K232N		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	232	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TATGAATTATTTTATGTGTAG	0.383			NA											4	24					0	0	0.001168	0	0
PCLO	27445	broad.mit.edu	37	7	82583854	82583854	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:82583854C>G	uc003uhx.2	-	5	6704	c.6415G>C	c.(6415-6417)GAA>CAA	p.E2139Q	PCLO_uc003uhv.2_Missense_Mutation_p.E2139Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2070					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TCAATTTCTTCTGTTGAAAAA	0.393			NA											11	44					0	0	0.010729	0	0
SEMA3A	10371	broad.mit.edu	37	7	83636733	83636733	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:83636733C>T	uc003uhz.2	-	10	1391	c.1076G>A	c.(1075-1077)AGG>AAG	p.R359K		NM_006080	NP_006071	Q14563	SEM3A_HUMAN	semaphorin 3A precursor	359	Sema.				axon guidance	extracellular region|membrane	receptor activity			ovary(2)|breast(1)|kidney(1)	4						GGGTCCATCCCTGTGGGCATA	0.438			NA											36	73					0	0	0.004878	0	0
MGC26647	219557	broad.mit.edu	37	7	88424136	88424136	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:88424136G>T	uc003ujv.2	-	2	303	c.121C>A	c.(121-123)CAC>AAC	p.H41N	ZNF804B_uc011khi.1_Intron	NM_152706	NP_689919	Q8TBZ9	CG062_HUMAN	hypothetical protein LOC219557	41											0	Esophageal squamous(14;0.00802)|all_hematologic(106;0.109)|Lung NSC(181;0.168)|all_lung(186;0.169)		STAD - Stomach adenocarcinoma(171;0.229)			TTCTTTAGGTGTAGTCGTTGT	0.408			NA											34	133					1.836e-18	3.63618e-18	0.003755	1	0
AKAP9	10142	broad.mit.edu	37	7	91712731	91712731	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:91712731G>T	uc003ulg.2	+	33	8633	c.8408G>T	c.(8407-8409)GGA>GTA	p.G2803V	AKAP9_uc003ulf.2_Missense_Mutation_p.G2795V|AKAP9_uc003uli.2_Missense_Mutation_p.G2426V|AKAP9_uc003ulj.2_Missense_Mutation_p.G573V|AKAP9_uc003ulk.2_Missense_Mutation_p.G78V	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	2815					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AAAAATGCAGGAATACAAATT	0.358			NA	T	BRAF	papillary thyroid								15	56					4.93089e-13	9.14129e-13	0.00245	1	0
SAMD9	54809	broad.mit.edu	37	7	92733294	92733294	+	Missense_Mutation	SNP	A	A	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:92733294A>T	uc003umf.2	-	3	2373	c.2117T>A	c.(2116-2118)GTC>GAC	p.V706D	SAMD9_uc003umg.2_Missense_Mutation_p.V706D	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	706						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			ATCCCTTTTGACAAAAGGTGA	0.358			NA											56	145					0	0	0.01441	0	0
COL1A2	1278	broad.mit.edu	37	7	94057003	94057003	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:94057003G>T	uc003ung.1	+	49	3803	c.3332G>T	c.(3331-3333)GGT>GTT	p.G1111V	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1111					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	TATGACTTTGGTTACGATGGA	0.537			NA								HNSCC(75;0.22)			29	75					2.24059e-21	4.54841e-21	0.00632	1	0
TAC1	6863	broad.mit.edu	37	7	97362026	97362026	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:97362026G>T	uc003uop.3	+	2	348	c.102G>T	c.(100-102)TGG>TGT	p.W34C	TAC1_uc003uoq.3_Missense_Mutation_p.W34C|TAC1_uc003uor.3_Missense_Mutation_p.W34C|TAC1_uc003uos.3_Missense_Mutation_p.W34C	NM_003182	NP_003173	P20366	TKN1_HUMAN	tachykinin 1 isoform beta precursor	34					detection of abiotic stimulus|elevation of cytosolic calcium ion concentration|insemination|neuropeptide signaling pathway|synaptic transmission|tachykinin receptor signaling pathway	extracellular space					0	all_cancers(62;3.95e-09)|all_epithelial(64;1.1e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0358)|all_lung(186;0.0384)				Bacitracin(DB00626)	GGTCCGACTGGTACGACAGCG	0.547			NA											22	60					1.50039e-11	2.58118e-11	0.012319	1	0
EMID2	136227	broad.mit.edu	37	7	101090977	101090977	+	Silent	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:101090977G>A	uc010lhy.1	+	3	480	c.288G>A	c.(286-288)CTG>CTA	p.L96L	EMID2_uc003uyo.1_Silent_p.L98L	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	98	EMI.					collagen				ovary(1)	1	Lung NSC(181;0.215)					ACAGGACTCTGATCAGACCCA	0.592			NA											3	7					0	0	0.004672	0	0
FBXL13	222235	broad.mit.edu	37	7	102667916	102667916	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:102667916T>C	uc003vaq.2	-	5	734	c.307A>G	c.(307-309)AAA>GAA	p.K103E	FBXL13_uc010liq.1_5'Flank|FBXL13_uc010lir.1_Missense_Mutation_p.K103E|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Missense_Mutation_p.K103E|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	103											0						TCTTTCTTTTTACTCTTATGT	0.333			NA											13	74					0	0	0.003163	0	0
SLC26A3	1811	broad.mit.edu	37	7	107427872	107427872	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:107427872G>T	uc003ver.2	-	7	1029	c.818C>A	c.(817-819)TCC>TAC	p.S273Y	SLC26A3_uc003ves.2_Missense_Mutation_p.S238Y	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	273	Helical; (Potential).				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						TTTAACAATGGATACAACCAA	0.348			NA											30	158					5.45727e-16	1.06012e-15	0.008361	1	0
NRCAM	4897	broad.mit.edu	37	7	107871486	107871486	+	Nonsense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:107871486C>T	uc003vfb.2	-	8	1010	c.539G>A	c.(538-540)TGG>TAG	p.W180*	NRCAM_uc003vfc.2_Nonsense_Mutation_p.W174*|NRCAM_uc011kmk.1_Nonsense_Mutation_p.W175*|NRCAM_uc003vfd.2_Nonsense_Mutation_p.W175*|NRCAM_uc003vfe.2_Nonsense_Mutation_p.W175*	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	180	Ig-like 2.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						ATTATCCATCCAAAATATTAT	0.323			NA											4	56					0	0	0.009096	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518073	113518073	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:113518073C>A	uc010ljy.1	-	4	3105	c.3074G>T	c.(3073-3075)AGG>ATG	p.R1025M		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	1025					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						ATTTTCATGCCTTGCTTCTTC	0.398			NA											34	222					1.61788e-16	3.18864e-16	0.012213	1	0
WASL	8976	broad.mit.edu	37	7	123349179	123349179	+	Silent	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:123349179T>C	uc003vkz.2	-	2	544	c.216A>G	c.(214-216)CCA>CCG	p.P72P		NM_003941	NP_003932	O00401	WASL_HUMAN	Wiskott-Aldrich syndrome gene-like protein	72	WH1.				actin polymerization or depolymerization|axon guidance|cellular component movement|nitric oxide metabolic process|protein complex assembly|regulation of nitric-oxide synthase activity|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|cytosol|nucleolus|plasma membrane	actin binding|small GTPase regulator activity				0						AAGATCTCTGTGGATTGTCCT	0.343			NA											22	46					0	0	0.012319	0	0
POT1	25913	broad.mit.edu	37	7	124503540	124503540	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:124503540C>A	uc003vlm.2	-	8	1011	c.410G>T	c.(409-411)CGT>CTT	p.R137L	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Missense_Mutation_p.R6L|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	137					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						TGCCCAAACACGTAAGGCTTC	0.438	Esophageal Squamous(149;1032 1141 16047 36610 40540 42429 44687 51642)		NA											51	114					9.57592e-29	2.00403e-28	0.01441	1	0
POT1	25913	broad.mit.edu	37	7	124510993	124510993	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:124510993C>A	uc003vlm.2	-	7	828	c.227G>T	c.(226-228)GGA>GTA	p.G76V	POT1_uc011koe.1_RNA|POT1_uc003vlk.2_RNA|POT1_uc003vll.2_RNA|POT1_uc003vlo.2_Intron|POT1_uc003vln.2_RNA	NM_015450	NP_056265	Q9NUX5	POTE1_HUMAN	protection of telomeres 1 isoform 1	76					DNA duplex unwinding|negative regulation of telomere maintenance via telomerase|positive regulation of DNA strand elongation|positive regulation of helicase activity|positive regulation of telomerase activity|positive regulation of telomere maintenance via telomerase|telomere capping|telomere formation via telomerase|telomere maintenance via telomerase	nuclear telomere cap complex|nucleoplasm	DEAD/H-box RNA helicase binding|single-stranded telomeric DNA binding|telomerase inhibitor activity			central_nervous_system(1)	1						AACAATATCTCCATTTTTATA	0.333	Esophageal Squamous(149;1032 1141 16047 36610 40540 42429 44687 51642)		NA											14	89					2.61681e-11	4.46398e-11	0.00245	1	0
CPA2	1358	broad.mit.edu	37	7	129919383	129919383	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:129919383G>T	uc003vpq.2	+	9	887	c.868G>T	c.(868-870)GTG>TTG	p.V290L		NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	290					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					GAAATCCATAGTGGACTTCAT	0.493			NA											23	63					3.5997e-14	6.82934e-14	0.014323	1	0
NUP205	23165	broad.mit.edu	37	7	135311040	135311040	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:135311040G>C	uc003vsw.2	+	33	4755	c.4724G>C	c.(4723-4725)AGA>ACA	p.R1575T	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1575					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						GAGCTGCTAAGATCAGGGGTG	0.443			NA											27	79					0	0	0.005443	0	0
EPHB6	2051	broad.mit.edu	37	7	142562114	142562114	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:142562114G>C	uc011kst.1	+	7	1343	c.556G>C	c.(556-558)GCT>CCT	p.A186P	EPHB6_uc011ksu.1_Missense_Mutation_p.A186P|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_Intron|EPHB6_uc003wbu.2_5'UTR|EPHB6_uc003wbv.2_5'Flank	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	186	Extracellular (Potential).					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					ACCCCACGGGGCTGGGCAGCG	0.532			NA											38	297					0	0	0.013114	0	0
OR2F1	26211	broad.mit.edu	37	7	143657537	143657537	+	Silent	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:143657537G>C	uc003wds.1	+	1	518	c.474G>C	c.(472-474)GTG>GTC	p.V158V		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					GCTCTCCTGTGCAGACTGCTA	0.527			NA											19	46					0	0	0.008871	0	0
OR2A14	135941	broad.mit.edu	37	7	143827061	143827061	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:143827061C>A	uc011kua.1	+	1	856	c.856C>A	c.(856-858)CCC>ACC	p.P286T		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	286	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					AATGCTGAACCCCCTGATATA	0.542			NA											41	171					1.15183e-24	2.34997e-24	0.009718	1	0
C7orf33	202865	broad.mit.edu	37	7	148312477	148312477	+	Missense_Mutation	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:148312477G>A	uc003wew.2	+	3	879	c.518G>A	c.(517-519)AGA>AAA	p.R173K		NM_145304	NP_660347	Q8WU49	CG033_HUMAN	hypothetical protein LOC202865	173										central_nervous_system(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			AGGATTTCCAGAACTGACAGC	0.383			NA											16	116					0	0	0.00499	0	0
C7orf29	113763	broad.mit.edu	37	7	150027589	150027589	+	Silent	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:150027589A>G	uc003wgy.2	+	1	652	c.96A>G	c.(94-96)ACA>ACG	p.T32T	LRRC61_uc003wgv.2_Intron|LRRC61_uc003wgx.2_Intron|LRRC61_uc003wgw.2_Intron	NM_138434	NP_612443	Q96FA7	CG029_HUMAN	hypothetical protein LOC113763	32										ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.011)			AGGTTCACACACACTTTCAGG	0.642			NA											36	162					0	0	0.00623	0	0
UBE3C	9690	broad.mit.edu	37	7	157000138	157000138	+	Missense_Mutation	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr7:157000138T>A	uc010lqs.2	+	12	1777	c.1465T>A	c.(1465-1467)TCT>ACT	p.S489T	UBE3C_uc003wng.2_Missense_Mutation_p.S489T	NM_014671	NP_055486	Q15386	UBE3C_HUMAN	ubiquitin protein ligase E3C	489					protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(2)|large_intestine(1)	5		all_hematologic(28;0.0185)|all_epithelial(9;0.0664)	OV - Ovarian serous cystadenocarcinoma(82;0.00448)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)		TTCTCCTATGTCTTTTGAAGA	0.348			NA											24	194					0	0	0.003954	0	0
MYOM2	9172	broad.mit.edu	37	8	2020568	2020568	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:2020568C>T	uc003wpx.3	+	9	1075	c.937C>T	c.(937-939)CGC>TGC	p.R313C	MYOM2_uc011kwi.1_Intron	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	313	Ig-like C2-type 2.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		GGTGCAGCCGCGCGCCGAGTG	0.592			NA											5	17					0	0	0.001984	0	0
MYOM2	9172	broad.mit.edu	37	8	2057201	2057201	+	Nonsense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:2057201C>A	uc003wpx.3	+	25	3197	c.3059C>A	c.(3058-3060)TCG>TAG	p.S1020*	MYOM2_uc011kwi.1_Nonsense_Mutation_p.S445*	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1020					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		CCTCTGAAATCGGAATTAGCT	0.413			NA											9	34					0.000442599	0.000514886	0.006214	1	0
RP1L1	94137	broad.mit.edu	37	8	10468155	10468155	+	Silent	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:10468155G>C	uc003wtc.2	-	4	3682	c.3453C>G	c.(3451-3453)CTC>CTG	p.L1151L		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1151					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		TCGAGATGCTGAGCAGCTCCT	0.567			NA											4	43					0	0	0.009096	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19362786	19362786	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:19362786G>C	uc011kyn.1	-	4	1624	c.560C>G	c.(559-561)GCC>GGC	p.A187G	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.A187G|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.A186G|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	187	Lumenal (Potential).				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		GGTCTCCAAGGCTGATTCAAT	0.542			NA											6	49					0	0	0.001984	0	0
SCARA5	286133	broad.mit.edu	37	8	27737266	27737266	+	Missense_Mutation	SNP	T	T	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:27737266T>C	uc003xgj.2	-	8	1611	c.1171A>G	c.(1171-1173)ATG>GTG	p.M391V	SCARA5_uc010luz.2_Missense_Mutation_p.M166V	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	391	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		CGGATCATCATCGGGGCCTCC	0.657			NA											5	14					0	0	0.001168	0	0
KCNU1	157855	broad.mit.edu	37	8	36663793	36663793	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:36663793G>T	uc010lvw.2	+	5	562	c.475G>T	c.(475-477)GCA>TCA	p.A159S	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	159	Helical; Name=Segment S2; (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		ATAGTTTATGGCAGCTGATGA	0.338			NA											5	20					0.000602214	0.000696578	0.000602	1	0
PXDNL	137902	broad.mit.edu	37	8	52325734	52325734	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:52325734G>C	uc003xqu.3	-	15	1981	c.1880C>G	c.(1879-1881)TCC>TGC	p.S627C		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	627					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				TCTTCGTGTGGAGTTAATTGC	0.348			NA											13	42					0	0	0.003163	0	0
CSMD3	114788	broad.mit.edu	37	8	113299383	113299383	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:113299383C>A	uc003ynu.2	-	58	9400	c.9241G>T	c.(9241-9243)GCT>TCT	p.A3081S	CSMD3_uc003yns.2_Missense_Mutation_p.A2283S|CSMD3_uc003ynt.2_Missense_Mutation_p.A3041S|CSMD3_uc011lhx.1_Missense_Mutation_p.A2912S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3081	Extracellular (Potential).|Sushi 22.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTATCACAAGCATAACGTACA	0.468			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			24	86					4.26978e-12	7.50446e-12	0.00333	1	0
COL22A1	169044	broad.mit.edu	37	8	139609156	139609156	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:139609156G>T	uc003yvd.2	-	62	4870	c.4423C>A	c.(4423-4425)CAG>AAG	p.Q1475K	COL22A1_uc011ljo.1_Missense_Mutation_p.Q755K	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	1475	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CTTTCAAGCTGCTTCCCCAGC	0.507			NA								HNSCC(7;0.00092)			68	183					5.41795e-27	1.11095e-26	0.01441	1	0
GSDMD	79792	broad.mit.edu	37	8	144641996	144641996	+	Missense_Mutation	SNP	G	G	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr8:144641996G>C	uc010mfe.2	+	6	970	c.267G>C	c.(265-267)CAG>CAC	p.Q89H	uc003yye.2_5'Flank|GSDMD_uc003yyf.2_Missense_Mutation_p.Q137H|GSDMD_uc003yyi.2_Missense_Mutation_p.Q89H|GSDMD_uc003yyg.2_Missense_Mutation_p.Q89H|GSDMD_uc003yyh.2_Intron	NM_024736	NP_079012	P57764	GSDMD_HUMAN	gasdermin D	89											0						TGGATGGGCAGATACAGGGCA	0.642			NA											4	23					0	0	0.001168	0	0
PDCD1LG2	80380	broad.mit.edu	37	9	5534764	5534764	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:5534764C>A	uc003zjg.3	+	3	348	c.75C>A	c.(73-75)GTC>GTA	p.V25V	C9orf46_uc003zjd.2_Intron|PDCD1LG2_uc011lmc.1_Silent_p.V25V|PDCD1LG2_uc011lmd.1_Silent_p.V25V|PDCD1LG2_uc010mhp.1_Silent_p.V25V|PDCD1LG2_uc010mho.1_Silent_p.V25V	NM_025239	NP_079515	Q9BQ51	PD1L2_HUMAN	programmed cell death 1 ligand 2 precursor	25	Ig-like V-type.|Extracellular (Potential).				immune response|T cell costimulation	endomembrane system|extracellular region|integral to membrane|plasma membrane	receptor activity				0	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000767)|Lung(218;0.112)		CAGTGACAGTCCCTAAGGAAC	0.408			NA											8	58					3.09899e-07	4.47754e-07	0.004482	1	0
PTPRD	5789	broad.mit.edu	37	9	8465644	8465644	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:8465644C>G	uc003zkk.2	-	31	4247	c.3536G>C	c.(3535-3537)AGC>ACC	p.S1179T	PTPRD_uc003zkp.2_Missense_Mutation_p.S768T|PTPRD_uc003zkq.2_Missense_Mutation_p.S768T|PTPRD_uc003zkr.2_Missense_Mutation_p.S763T|PTPRD_uc003zks.2_Missense_Mutation_p.S758T|PTPRD_uc003zkl.2_Missense_Mutation_p.S1170T|PTPRD_uc003zkm.2_Missense_Mutation_p.S1166T|PTPRD_uc003zkn.2_Missense_Mutation_p.S768T|PTPRD_uc003zko.2_Missense_Mutation_p.S765T	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1179	Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		ATAACGGATGCTTCTGCGCTT	0.398			NA								TSP Lung(15;0.13)			9	79					0	0	0.013537	0	0
C9orf150	286343	broad.mit.edu	37	9	12821419	12821419	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:12821419G>T	uc003zkw.2	+	2	1050	c.347G>T	c.(346-348)CGC>CTC	p.R116L		NM_203403	NP_981948	Q8IV03	CI150_HUMAN	hypothetical protein LOC286343	119											0				GBM - Glioblastoma multiforme(1;1.64e-13)		AGGCTCATGCGCCAGTTGCTT	0.483			NA											28	145					4.87955e-14	9.17175e-14	0.005443	1	0
FRMPD1	22844	broad.mit.edu	37	9	37746166	37746166	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:37746166C>A	uc004aag.1	+	16	4181	c.4137C>A	c.(4135-4137)CCC>CCA	p.P1379P	FRMPD1_uc004aah.1_Silent_p.P1379P	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1379						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TGGTTCTGCCCTGGAGGCCTG	0.652			NA											16	70					1.3612e-06	1.86706e-06	0.003163	1	0
PCSK5	5125	broad.mit.edu	37	9	78601129	78601129	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:78601129A>G	uc004ajz.2	+	3	917	c.379A>G	c.(379-381)AAT>GAT	p.N127D	PCSK5_uc004ajy.2_Missense_Mutation_p.N127D|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	127	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						TACCTATTTCAATGATCCCAA	0.473			NA											14	67					0	0	0.006122	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321909	79321909	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:79321909G>T	uc010mpk.2	-	8	5405	c.5281C>A	c.(5281-5283)CAA>AAA	p.Q1761K	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1761					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GGGCTGCTTTGTTGATTGTCA	0.448			NA											5	46					8.12818e-05	9.76344e-05	0.001984	1	0
VPS13A	23230	broad.mit.edu	37	9	79933209	79933209	+	Missense_Mutation	SNP	A	A	C			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:79933209A>C	uc004akr.2	+	41	5275	c.5015A>C	c.(5014-5016)AAG>ACG	p.K1672T	VPS13A_uc004akp.3_Missense_Mutation_p.K1672T|VPS13A_uc004akq.3_Missense_Mutation_p.K1672T|VPS13A_uc004aks.2_Missense_Mutation_p.K1633T|VPS13A_uc004akt.2_Missense_Mutation_p.K12T|VPS13A_uc010mpo.1_Missense_Mutation_p.K268T	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1672					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TATACAACTAAGGAAACCATC	0.308			NA											16	87					0	0	0.006122	0	0
ERP44	23071	broad.mit.edu	37	9	102778708	102778708	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:102778708C>A	uc004bam.2	-	8	866	c.658G>T	c.(658-660)GAT>TAT	p.D220Y	ERP44_uc010msy.2_RNA|ERP44_uc010msz.2_Missense_Mutation_p.D220Y	NM_015051	NP_055866	Q9BS26	ERP44_HUMAN	thioredoxin domain containing 4 (endoplasmic	220					cell redox homeostasis|glycoprotein metabolic process|protein folding|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|ER-Golgi intermediate compartment	protein binding|protein disulfide isomerase activity				0						TACACCATATCCGGAGCAGAA	0.279			NA											10	51					0.00829132	0.00907352	0.008291	1	0
AKNA	80709	broad.mit.edu	37	9	117124771	117124771	+	Missense_Mutation	SNP	C	C	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:117124771C>G	uc004biq.3	-	7	1966	c.1831G>C	c.(1831-1833)GAG>CAG	p.E611Q	AKNA_uc004bin.3_5'Flank|AKNA_uc004bio.3_Missense_Mutation_p.E71Q|AKNA_uc004bip.3_Missense_Mutation_p.E530Q|AKNA_uc004bir.3_Missense_Mutation_p.E611Q|AKNA_uc004bis.3_Missense_Mutation_p.E611Q|AKNA_uc010mve.2_Missense_Mutation_p.E492Q|AKNA_uc004biu.1_Missense_Mutation_p.E352Q|AKNA_uc004biv.1_Missense_Mutation_p.E611Q	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	611					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						TTCAGGTACTCCTCCTCTAGG	0.652			NA											3	7					0	0	0.004672	0	0
DBC1	1620	broad.mit.edu	37	9	122075577	122075577	+	Silent	SNP	T	T	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:122075577T>A	uc004bkc.2	-	2	513	c.57A>T	c.(55-57)TCA>TCT	p.S19S	DBC1_uc004bkd.2_Silent_p.S19S	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	19					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						AGGGCTGCACTGAGATACGGC	0.512			NA											23	68					0	0	0.00333	0	0
OR1J1	347168	broad.mit.edu	37	9	125239270	125239270	+	Silent	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:125239270A>G	uc011lyu.1	-	1	936	c.936T>C	c.(934-936)GCT>GCC	p.A312A	OR1J2_uc004bmj.1_Intron	NM_001004451	NP_001004451	Q8NGS3	OR1J1_HUMAN	olfactory receptor, family 1, subfamily J,	312	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						tacaggcatgagccactgcgc	0.169			NA											3	74					0	0	0.004672	0	0
LRSAM1	90678	broad.mit.edu	37	9	130251778	130251778	+	Missense_Mutation	SNP	A	A	G			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:130251778A>G	uc004brb.1	+	19	1748	c.1403A>G	c.(1402-1404)CAT>CGT	p.H468R	LRSAM1_uc010mxk.1_Missense_Mutation_p.H468R|LRSAM1_uc004brc.1_Missense_Mutation_p.H468R|LRSAM1_uc004brd.1_Missense_Mutation_p.H468R|LRSAM1_uc004bre.1_Missense_Mutation_p.H48R	NM_001005373	NP_001005373	Q6UWE0	LRSM1_HUMAN	leucine rich repeat and sterile alpha motif	468					negative regulation of endocytosis|non-lytic virus budding|protein autoubiquitination|protein catabolic process|protein polyubiquitination|protein transport|ubiquitin-dependent endocytosis	cytoplasm|extracellular region|membrane part	hormone activity|ubiquitin-protein ligase activity|zinc ion binding				0						GACCTGATGCATCGGCAGATC	0.647			NA											3	8					0	0	0.004672	0	0
C9orf171	389799	broad.mit.edu	37	9	135447819	135447819	+	Silent	SNP	G	G	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:135447819G>A	uc004cbn.2	+	7	933	c.885G>A	c.(883-885)CAG>CAA	p.Q295Q	C9orf171_uc004cbo.2_Silent_p.Q259Q	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	295										ovary(4)|large_intestine(1)	5						CCGATCGCCAGAGAGCATTAA	0.627			NA											11	34					0	0	0.00245	0	0
FCN2	2220	broad.mit.edu	37	9	137777622	137777622	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:137777622G>T	uc004cfg.1	+	6	448	c.438G>T	c.(436-438)CAG>CAT	p.Q146H	FCN2_uc004cfh.1_Missense_Mutation_p.Q108H	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	146	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		AGGTTTTCCAGCGGAGGGTGG	0.652			NA											6	42					8.12818e-05	9.76344e-05	0.001984	1	0
OLFM1	10439	broad.mit.edu	37	9	138011774	138011775	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:138011774_138011775GG>TT	uc010nar.2	+	6	1524_1525	c.1208_1209GG>TT	c.(1207-1209)GGG>GTT	p.G403V	OLFM1_uc004cfl.3_Missense_Mutation_p.G385V|OLFM1_uc004cfn.3_Missense_Mutation_p.G154V	NM_014279	NP_055094	Q99784	NOE1_HUMAN	olfactomedin related ER localized protein	403	Olfactomedin-like.				nervous system development	endoplasmic reticulum lumen	protein binding			ovary(1)|skin(1)	2		Myeloproliferative disorder(178;0.0333)		Epithelial(140;5.49e-08)|OV - Ovarian serous cystadenocarcinoma(145;9.68e-08)|all cancers(34;1.88e-07)		CGCAGCGCCGGGGAGGCCTTCA	0.599			NA											4	34					0	0	0.004672	0	0
PNPLA7	375775	broad.mit.edu	37	9	140389498	140389498	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr9:140389498C>T	uc004cnf.2	-	18	2376	c.2039G>A	c.(2038-2040)CGC>CAC	p.R680H	C9orf167_uc011mew.1_Intron|PNPLA7_uc011mfa.1_Intron|PNPLA7_uc010ncj.1_Missense_Mutation_p.R705H	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	680	cNMP 3.				lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		TGGGTACCTGCGCTTGATGGA	0.537			NA											11	41					0	0	0.008291	0	0
FRMPD4	9758	broad.mit.edu	37	X	12708435	12708435	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:12708435C>A	uc004cuz.1	+	8	1309	c.803C>A	c.(802-804)ACT>AAT	p.T268N	FRMPD4_uc011mij.1_Missense_Mutation_p.T260N	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	268	FERM.				positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						GAACAGGAGACTCTAACTCAG	0.502			NA											18	82					9.7654e-05	0.000116954	0.007413	1	0
RAI2	10742	broad.mit.edu	37	X	17818841	17818842	+	Missense_Mutation	DNP	CA	CA	AT			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:17818841_17818842CA>AT	uc004cyf.2	-	3	1859_1860	c.1289_1290TG>AT	c.(1288-1290)ATG>AAT	p.M430N	RAI2_uc004cyg.2_Missense_Mutation_p.M430N|RAI2_uc010nfa.2_Missense_Mutation_p.M430N|RAI2_uc004cyh.3_Missense_Mutation_p.M430N|RAI2_uc011miy.1_Missense_Mutation_p.M380N	NM_021785	NP_068557	Q9Y5P3	RAI2_HUMAN	retinoic acid induced 2	430					embryo development					ovary(1)|breast(1)	2	Hepatocellular(33;0.183)					ACTCGCCCACCATCTCAATGTT	0.545			NA											6	145					0	0	0.004672	0	0
HEPH	9843	broad.mit.edu	37	X	65474945	65474945	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:65474945G>T	uc011moz.1	+	16	2701	c.2641G>T	c.(2641-2643)GTT>TTT	p.V881F	HEPH_uc004dwn.2_Missense_Mutation_p.V881F|HEPH_uc004dwo.2_Missense_Mutation_p.V611F|HEPH_uc010nkr.2_Missense_Mutation_p.V689F|HEPH_uc011mpa.1_Missense_Mutation_p.V881F|HEPH_uc010nks.2_Missense_Mutation_p.V170F	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	878	Extracellular (Potential).|Plastocyanin-like 5.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						CTCTGCTTGTGTTTCCTGGAT	0.483			NA											6	42					2.0095e-06	2.71049e-06	0.001984	1	0
KIAA2022	340533	broad.mit.edu	37	X	73961404	73961404	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:73961404C>A	uc004eby.2	-	3	3605	c.2988G>T	c.(2986-2988)ATG>ATT	p.M996I		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	996					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						AGAGTGGGGCCATTGAATCAA	0.438			NA											14	48					2.61681e-11	4.46398e-11	0.00245	1	0
KIAA2022	340533	broad.mit.edu	37	X	73963752	73963752	+	Missense_Mutation	SNP	C	C	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:73963752C>T	uc004eby.2	-	3	1257	c.640G>A	c.(640-642)GCA>ACA	p.A214T		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	214					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CTGTCTCCTGCCCTTGACTTA	0.448			NA											26	108					0	0	0.004656	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104440260	104440260	+	Silent	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:104440260C>A	uc004elz.1	+	3	942	c.186C>A	c.(184-186)ACC>ACA	p.T62T		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	62	Ig-like C2-type 1.|Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						ATATTCGTACCAACTATAGCA	0.473			NA											15	53					1.15088e-07	1.68078e-07	0.004007	1	0
RGAG1	57529	broad.mit.edu	37	X	109697657	109697657	+	Missense_Mutation	SNP	G	G	T	rs34064910	byFrequency	TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:109697657G>T	uc004eor.1	+	3	4058	c.3812G>T	c.(3811-3813)CGG>CTG	p.R1271L	RGAG1_uc011msr.1_Missense_Mutation_p.R1271L	NM_020769	NP_065820	Q8NET4	RGAG1_HUMAN	retrotransposon gag domain containing 1	1271										lung(2)|upper_aerodigestive_tract(1)|ovary(1)	4						GCCATTCTACGGACCAGGTTT	0.522			NA											31	137					8.88839e-20	1.77768e-19	0.010818	1	0
IGSF1	3547	broad.mit.edu	37	X	130409975	130409975	+	Missense_Mutation	SNP	C	C	A			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:130409975C>A	uc004ewd.2	-	15	3094	c.2856G>T	c.(2854-2856)AGG>AGT	p.R952S	IGSF1_uc004ewe.3_Missense_Mutation_p.R946S|IGSF1_uc004ewf.2_Missense_Mutation_p.R932S	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	952	Extracellular (Potential).|Ig-like C2-type 9.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GATATGACCCCCTGTTTGACA	0.512			NA											11	53					3.86212e-05	4.80988e-05	0.008291	1	0
MAGEC3	139081	broad.mit.edu	37	X	140926218	140926218	+	Missense_Mutation	SNP	G	G	T			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:140926218G>T	uc011mwp.1	+	1	117	c.117G>T	c.(115-117)CAG>CAT	p.Q39H		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	39										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					TCCCACCTCAGCCCCAGGTGT	0.488			NA											25	93					1.26454e-06	1.74627e-06	0.005443	1	0
KIF5A	3798	broad.mit.edu	37	12	57963420	57963420	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr12:57963420delG	uc001sor.1	+	11	1279	c.1071delG	c.(1069-1071)AAGfs	p.K357fs	KIF5A_uc010srr.1_Frame_Shift_Del_p.K268fs	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	357					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						aggcccagaaggagaCGATTG	0.403			NA											11	58	---	---	---	---	NA	NA	NA	NA	NA
NDN	4692	broad.mit.edu	37	15	23932034	23932034	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr15:23932034delC	uc001ywk.2	-	1	417	c.331delG	c.(331-333)GTCfs	p.V111fs		NM_002487	NP_002478	Q99608	NECD_HUMAN	necdin	111	MAGE.				negative regulation of cell proliferation|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|perikaryon	DNA binding				0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;8.37e-11)|Epithelial(43;9.29e-10)|BRCA - Breast invasive adenocarcinoma(123;0.00179)|GBM - Glioblastoma multiforme(186;0.018)|Lung(196;0.153)		TGGTCCTTGACCAGCACGTAC	0.652			NA							Prader-Willsyndrome				10	49	---	---	---	---	NA	NA	NA	NA	NA
PLD2	5338	broad.mit.edu	37	17	4713016	4713016	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr17:4713016delC	uc002fzc.2	+	8	746	c.645delC	c.(643-645)GGCfs	p.G215fs	PLD2_uc010vsj.1_Frame_Shift_Del_p.G72fs|PLD2_uc002fzd.2_Frame_Shift_Del_p.G215fs	NM_002663	NP_002654	O14939	PLD2_HUMAN	phospholipase D2	215	PH.				cell communication|cytoskeleton organization|small GTPase mediated signal transduction		NAPE-specific phospholipase D activity|phosphatidylinositol binding|phospholipase D activity			breast(2)|upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	5					Choline(DB00122)	GCTCAGGTGGCCACCGTGTTC	0.637			NA											30	129	---	---	---	---	NA	NA	NA	NA	NA
WDR19	57728	broad.mit.edu	37	4	39247011	39247011	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr4:39247011delC	uc003gtv.2	+	24	2822	c.2668delC	c.(2668-2670)CCCfs	p.P890fs	WDR19_uc011byi.1_Frame_Shift_Del_p.P730fs|WDR19_uc003gtw.1_Frame_Shift_Del_p.P487fs	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	890					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						TGATCTTCTGCCCCACGTTTC	0.413			NA											7	24	---	---	---	---	NA	NA	NA	NA	NA
CDH9	1007	broad.mit.edu	37	5	26902602	26902602	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr5:26902602delG	uc003jgs.1	-	7	1405	c.1236delC	c.(1234-1236)GCCfs	p.A412fs		NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	412	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						AATTGTTCCTGGCATCTGGAT	0.333	Melanoma(8;187 585 15745 40864 52829)		NA											21	75	---	---	---	---	NA	NA	NA	NA	NA
BAI3	577	broad.mit.edu	37	6	69666012	69666012	+	Frame_Shift_Del	DEL	C	C	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:69666012delC	uc003pev.3	+	7	1740	c.1292delC	c.(1291-1293)GCCfs	p.A431fs	BAI3_uc010kak.2_Frame_Shift_Del_p.A431fs	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	431	TSP type-1 3.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACTGCAGCTGCCCATGGAGGC	0.552			NA											7	28	---	---	---	---	NA	NA	NA	NA	NA
AKD1	221264	broad.mit.edu	37	6	109814724	109814726	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	TCT	TCT	-	-	TCT	TCT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chr6:109814724_109814726delTCT	uc003ptn.2	-	41	5659_5661	c.5582_5584delAGA	c.(5581-5586)AAGATG>ATG	p.K1861del	AKD1_uc011eas.1_In_Frame_Del_p.K246del	NM_001145128	NP_001138600	Q5TCS8	AKD1_HUMAN	adenylate kinase domain containing 1 isoform 1	1861					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|nucleoside-triphosphatase activity			ovary(1)	1						AACTGCTCCATCTTCTTCTTATA	0.369			NA											44	136	---	---	---	---	NA	NA	NA	NA	NA
FAM47C	442444	broad.mit.edu	37	X	37026894	37026894	+	Frame_Shift_Del	DEL	G	G	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:37026894delG	uc004ddl.1	+	1	425	c.411delG	c.(409-411)CTGfs	p.L137fs		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	137										ovary(3)	3						ACCCCAATCTGGGAGAAGATA	0.567			NA											16	69	---	---	---	---	NA	NA	NA	NA	NA
PASD1	139135	broad.mit.edu	37	X	150817142	150817144	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-44-6145-01A-11D-1753-08	TCGA-44-6145-10A-01D-1753-08	GCT	GCT	-	-	GCT	GCT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	220dc947-4afc-4485-bcc7-cea046100b4b	47ac71a9-20e1-43a4-b77c-c3d45a7df4d6	g.chrX:150817142_150817144delGCT	uc004fev.3	+	9	1017_1019	c.685_687delGCT	c.(685-687)GCTdel	p.A236del		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	236	Poly-Ala.					nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CGTTGAACCCgctgctgctgctg	0.355			NA											7	183	---	---	---	---	NA	NA	NA	NA	NA
