Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
GNB1	2782	broad.mit.edu	37	1	1720625	1720625	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:1720625G>A	uc001aif.2	-	10	1115	c.783C>T	c.(781-783)CTC>CTT	p.L261L	GNB1_uc009vky.2_Silent_p.L161L	NM_002074	NP_002065	P62873	GBB1_HUMAN	guanine nucleotide-binding protein, beta-1	261					cellular response to glucagon stimulus|energy reserve metabolic process|muscarinic acetylcholine receptor signaling pathway|platelet activation|Ras protein signal transduction|synaptic transmission	heterotrimeric G-protein complex	GTPase activity|GTPase binding|signal transducer activity				0	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;5.62e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.14e-35)|OV - Ovarian serous cystadenocarcinoma(86;7.31e-23)|GBM - Glioblastoma multiforme(42;3.1e-07)|COAD - Colon adenocarcinoma(227;0.000323)|Colorectal(212;0.000374)|Kidney(185;0.00392)|BRCA - Breast invasive adenocarcinoma(365;0.00573)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.0482)|Lung(427;0.236)		AGTAAGTCATGAGCTCCTGGT	0.537			NA									OREG0012998	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	35					0	0	0.002445	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809739	18809739	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:18809739C>A	uc001bax.2	+	1	2316	c.2264C>A	c.(2263-2265)GCC>GAC	p.A755D	KLHDC7A_uc009vpg.2_Intron	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	755						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGTTTCCCGGCCCCGCAGGGC	0.627			NA											33	77					1.71298e-08	2.6624e-08	0.003755	1	0
FAM54B	56181	broad.mit.edu	37	1	26153313	26153313	+	Silent	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:26153313T>C	uc001bkq.3	+	5	657	c.447T>C	c.(445-447)GAT>GAC	p.D149D	FAM54B_uc001bkr.3_Silent_p.D149D|FAM54B_uc010oet.1_Silent_p.D182D|FAM54B_uc009vrz.2_Silent_p.D146D|FAM54B_uc001bks.3_Silent_p.D149D|FAM54B_uc001bkt.3_Silent_p.D149D|FAM54B_uc001bku.3_Silent_p.D146D|FAM54B_uc001bkv.3_Silent_p.D52D	NM_001099625	NP_001093095	Q9H019	FA54B_HUMAN	hypothetical protein LOC56181 isoform a	149										pancreas(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.00038)|all_lung(284;0.00051)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0505)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;1.96e-25)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|BRCA - Breast invasive adenocarcinoma(304;0.00095)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCAGCTGATGCAGGTAGGA	0.572			NA											8	16					0	0	0.00308	0	0
SFN	2810	broad.mit.edu	37	1	27189941	27189941	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:27189941G>C	uc001bnc.1	+	1	309	c.238G>C	c.(238-240)GAG>CAG	p.E80Q	uc010ofi.1_RNA	NM_006142	NP_006133	P31947	1433S_HUMAN	stratifin	80					DNA damage response, signal transduction resulting in induction of apoptosis|negative regulation of caspase activity|release of cytochrome c from mitochondria	cytoplasm|extracellular space|nucleus	protein domain specific binding|protein kinase C inhibitor activity				0		all_cancers(24;1.23e-26)|all_epithelial(13;1.19e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;0.00017)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.1e-52)|Epithelial(14;2.31e-52)|OV - Ovarian serous cystadenocarcinoma(117;8.22e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000501)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|READ - Rectum adenocarcinoma(331;0.0419)|GBM - Glioblastoma multiforme(114;0.0767)|Lung(427;0.215)		GAAGGGGCCCGAGGTGCGTGA	0.642			NA											4	111					0	0	0.000248	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956887	33956887	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:33956887C>G	uc001bxj.3	+	6	1196	c.1029C>G	c.(1027-1029)TTC>TTG	p.F343L	ZSCAN20_uc001bxk.2_Missense_Mutation_p.F289L|ZSCAN20_uc009vui.2_Missense_Mutation_p.F343L	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	343					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AATCTCCTTTCTCTGAAAAGC	0.522			NA											17	130					0	0	0.00499	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956899	33956899	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:33956899C>T	uc001bxj.3	+	6	1208	c.1041C>T	c.(1039-1041)CTC>CTT	p.L347L	ZSCAN20_uc001bxk.2_Silent_p.L293L|ZSCAN20_uc009vui.2_Silent_p.L347L	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	347					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CTGAAAAGCTCCGGACTTGTC	0.532			NA											19	142					0	0	0.008871	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33956998	33956998	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:33956998C>T	uc001bxj.3	+	6	1307	c.1140C>T	c.(1138-1140)GTC>GTT	p.V380V	ZSCAN20_uc001bxk.2_Silent_p.V326V|ZSCAN20_uc009vui.2_Silent_p.V380V	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	380					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GCTATAGGGTCAAAAACCTCC	0.587			NA											20	171					0	0	0.008871	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33957238	33957238	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:33957238C>T	uc001bxj.3	+	6	1547	c.1380C>T	c.(1378-1380)GTC>GTT	p.V460V	ZSCAN20_uc001bxk.2_Silent_p.V406V|ZSCAN20_uc009vui.2_Silent_p.V460V	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	460					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CTGGCCTGGTCAATGTTGAGT	0.547			NA											33	150					0	0	0.002836	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33957289	33957289	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:33957289C>T	uc001bxj.3	+	6	1598	c.1431C>T	c.(1429-1431)TTC>TTT	p.F477F	ZSCAN20_uc001bxk.2_Silent_p.F423F|ZSCAN20_uc009vui.2_Silent_p.F477F	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	477					viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				CAGCTCTGTTCCAGAGTCGTA	0.547			NA											32	158					0	0	0.005524	0	0
YRDC	79693	broad.mit.edu	37	1	38272818	38272818	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:38272818C>T	uc001cca.1	-	2	472	c.459G>A	c.(457-459)ATG>ATA	p.M153I	C1orf122_uc001ccb.1_5'UTR	NM_024640	NP_078916	Q86U90	YRDC_HUMAN	ischemia/reperfusion inducible protein	153	YrdC-like.				negative regulation of transport	membrane|mitochondrion					0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CCGAGCGTTCCATCACCAGGG	0.512			NA											7	113					0	0	0.000978	0	0
FAM183A	440585	broad.mit.edu	37	1	43621967	43621967	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:43621967G>C	uc009vwo.2	+	4	417	c.388G>C	c.(388-390)GAT>CAT	p.D130H		NM_001101376	NP_001094846	A6NL82	F183A_HUMAN	hCG23177	130										ovary(3)	3						GGGCTTAGGAGATGATCACCA	0.473			NA											15	125					0	0	0.003163	0	0
DIO1	1733	broad.mit.edu	37	1	54360014	54360014	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:54360014T>C	uc010onx.1	+	1	154	c.131T>C	c.(130-132)ATG>ACG	p.M44T	DIO1_uc010onw.1_Missense_Mutation_p.M44T|DIO1_uc009vzl.2_Missense_Mutation_p.M44T|DIO1_uc001cwb.2_Missense_Mutation_p.M44T|DIO1_uc010ony.1_Missense_Mutation_p.M44T|DIO1_uc001cwd.2_RNA|DIO1_uc001cwe.2_RNA|DIO1_uc001cwf.2_RNA|DIO1_uc001cwg.2_RNA	NM_000792	NP_000783	P49895	IOD1_HUMAN	deiodinase, iodothyronine, type I isoform a	44					hormone biosynthetic process|thyroid hormone generation	endoplasmic reticulum membrane|integral to membrane|plasma membrane	selenium binding|thyroxine 5'-deiodinase activity				0						ATCCTGGCCATGGGCGAGAAG	0.522			NA											46	134					0	0	0.00361	0	0
C1orf175	374977	broad.mit.edu	37	1	55145070	55145070	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:55145070C>T	uc010ooe.1	+	12	2508	c.2184C>T	c.(2182-2184)CTC>CTT	p.L728L	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Silent_p.L296L|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.L246L|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Silent_p.L728L|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	728						integral to membrane	binding				0						AGGTCATGCTCAGCTCGGTGC	0.662			NA											7	74					0	0	0.00308	0	0
LRRC8D	55144	broad.mit.edu	37	1	90399987	90399987	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:90399987G>T	uc001dnm.2	+	3	1785	c.1360G>T	c.(1360-1362)GAG>TAG	p.E454*	LRRC8D_uc001dnn.2_Nonsense_Mutation_p.E454*	NM_001134479	NP_001127951	Q7L1W4	LRC8D_HUMAN	leucine rich repeat containing 8 family, member	454						integral to membrane	protein binding			ovary(2)	2		all_lung(203;0.0894)|Lung NSC(277;0.227)		all cancers(265;0.0109)|Epithelial(280;0.0427)		TTTGAACCATGAGTGGACATT	0.453			NA											23	5					1.64293e-13	2.68751e-13	0.00333	1	0
CDC7	8317	broad.mit.edu	37	1	91973869	91973869	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:91973869G>A	uc001doe.2	+	4	415	c.250G>A	c.(250-252)GAA>AAA	p.E84K	CDC7_uc001dof.2_Missense_Mutation_p.E84K|CDC7_uc010osw.1_Missense_Mutation_p.E56K|CDC7_uc009wdc.2_Missense_Mutation_p.E84K	NM_003503	NP_003494	O00311	CDC7_HUMAN	cell division cycle 7	84	Protein kinase.				cell cycle checkpoint|cell division|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|positive regulation of cell proliferation|regulation of S phase	cytoplasm|nucleoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	5		all_lung(203;0.0165)|Lung NSC(277;0.0562)		all cancers(265;0.00108)|Epithelial(280;0.0184)|KIRC - Kidney renal clear cell carcinoma(1967;0.124)		AGTAGGACCTGAAGAGAAAAT	0.353			NA											7	8					0	0	0.006214	0	0
MTF2	22823	broad.mit.edu	37	1	93586141	93586141	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:93586141G>T	uc009wdj.2	+	9	1125	c.833G>T	c.(832-834)AGT>ATT	p.S278I	MTF2_uc010oth.1_Missense_Mutation_p.S176I|MTF2_uc009wdk.2_Missense_Mutation_p.S278I|MTF2_uc001dpi.3_Intron|MTF2_uc010oti.1_Missense_Mutation_p.S176I|MTF2_uc001dpj.3_Missense_Mutation_p.S176I|MTF2_uc001dpl.3_Missense_Mutation_p.S176I	NM_007358	NP_031384	Q9Y483	MTF2_HUMAN	metal response element binding transcription	278						nucleus	DNA binding|zinc ion binding			ovary(2)	2		all_lung(203;0.00196)|Lung NSC(277;0.00902)|Melanoma(281;0.099)|Ovarian(761;0.109)|all_neural(321;0.185)|Glioma(108;0.203)		all cancers(265;0.00076)|GBM - Glioblastoma multiforme(16;0.00157)|Epithelial(280;0.0886)		TACAACCTAAGTGTTATTCAT	0.353			NA											13	25					2.68362e-12	4.32316e-12	0.001368	1	0
SPAG17	200162	broad.mit.edu	37	1	118628577	118628577	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:118628577G>A	uc001ehk.2	-	13	1798	c.1730C>T	c.(1729-1731)ACA>ATA	p.T577I		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	577						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CTCATGAATTGTAGCTAGACG	0.398			NA											35	10					0	0	0.004878	0	0
ITGA10	8515	broad.mit.edu	37	1	145536860	145536860	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:145536860C>T	uc001eoa.2	+	18	2316	c.2240C>T	c.(2239-2241)TCA>TTA	p.S747L	NBPF10_uc001emp.3_Intron|ITGA10_uc010oyv.1_Missense_Mutation_p.S616L|ITGA10_uc009wiw.2_Missense_Mutation_p.S604L|ITGA10_uc010oyw.1_Missense_Mutation_p.S692L	NM_003637	NP_003628	O75578	ITA10_HUMAN	integrin, alpha 10 precursor	747	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway	integrin complex	collagen binding|receptor activity			lung(2)|ovary(2)|kidney(2)|large_intestine(1)|skin(1)	8	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					CAGGATACATCAGATTACCTC	0.323			NA											25	254					0	0	0.003954	0	0
BCL9	607	broad.mit.edu	37	1	147086252	147086252	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:147086252T>A	uc001epq.2	+	6	1137	c.397T>A	c.(397-399)TCC>ACC	p.S133T	BCL9_uc010ozr.1_Missense_Mutation_p.S59T	NM_004326	NP_004317	O00512	BCL9_HUMAN	B-cell CLL/lymphoma 9	133					Wnt receptor signaling pathway	nucleus	protein binding			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.115)					CCACATAAAGTCCCAGGATTC	0.458			NA	T	IGH@|IGL@	B-ALL								7	77					0	0	0.004482	0	0
SV2A	9900	broad.mit.edu	37	1	149878386	149878386	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:149878386C>T	uc001etg.2	-	11	2192	c.1701G>A	c.(1699-1701)GTG>GTA	p.V567V	SV2A_uc009wlk.2_Silent_p.V19V|SV2A_uc001eth.2_Silent_p.V567V	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	567	Extracellular (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GACGGCTGTTCACAAACTTGT	0.532			NA											8	60					0	0	0.00308	0	0
HRNR	388697	broad.mit.edu	37	1	152193064	152193064	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:152193064G>T	uc001ezt.1	-	3	1117	c.1041C>A	c.(1039-1041)GGC>GGA	p.G347G		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	347	3.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTGCCCAAAGCCAGAAGTCT	0.567			NA											108	77					1.54984e-59	2.86208e-59	0.00361	1	0
F5	2153	broad.mit.edu	37	1	169510973	169510973	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:169510973G>A	uc001ggg.1	-	13	3500	c.3355C>T	c.(3355-3357)CAG>TAG	p.Q1119*		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	1119	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GGCACTGTCTGATAAAGACCT	0.478			NA											13	161					0	0	0.001368	0	0
C1orf9	51430	broad.mit.edu	37	1	172543059	172543059	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:172543059C>G	uc001giq.3	+	10	1394	c.1078C>G	c.(1078-1080)CAA>GAA	p.Q360E	C1orf9_uc010pmm.1_Missense_Mutation_p.Q360E|C1orf9_uc009wwd.2_Missense_Mutation_p.Q323E|C1orf9_uc010pmn.1_Missense_Mutation_p.Q323E|C1orf9_uc010pmo.1_RNA	NM_014283	NP_055098	Q9UBS9	OSPT_HUMAN	chromosome 1 open reading frame 9 protein	360	SUN.				multicellular organismal development|ossification	integral to membrane|rough endoplasmic reticulum membrane				ovary(2)	2		Breast(1374;0.212)		Colorectal(1306;3.98e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00544)		TGAACCAATTCAAGTAAAACA	0.274	Colon(43;174 953 11768 38880 47057)		NA											3	46					0	0	0.000248	0	0
CFH	3075	broad.mit.edu	37	1	196706742	196706742	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:196706742G>A	uc001gtj.3	+	17	2974	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	912	Sushi 15.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TGAAGAAAATGAAACAACATG	0.363			NA											8	52					0	0	0.004482	0	0
LEMD1	93273	broad.mit.edu	37	1	205350899	205350899	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:205350899C>T	uc001hcj.1	-	6	535	c.433G>A	c.(433-435)GAG>AAG	p.E145K	LEMD1_uc001hci.1_Silent_p.S97S|LEMD1_uc001hck.1_RNA|LEMD1_uc001hcl.1_Missense_Mutation_p.E104K|LEMD1_uc001hcm.1_RNA|LEMD1_uc001hcn.1_RNA|uc001hch.1_Intron			Q68G75	LEMD1_HUMAN	RecName: Full=LEM domain-containing protein 1;          Short=LEMP-1; AltName: Full=Cancer/testis antigen 50;          Short=CT50;	145						integral to membrane|nuclear envelope					0	Breast(84;0.247)		BRCA - Breast invasive adenocarcinoma(75;0.0938)			CTCCAGCTCTCGATAGTCTGG	0.478			NA											12	264					0	0	0.000978	0	0
PROX1	5629	broad.mit.edu	37	1	214169925	214169925	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:214169925G>A	uc001hkh.2	+	2	319	c.47G>A	c.(46-48)AGG>AAG	p.R16K	PROX1_uc001hkg.1_Missense_Mutation_p.R16K	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	16					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		CAAACCAAGAGGAGAAGAGTT	0.493			NA											76	53					0	0	0.00361	0	0
DUSP10	11221	broad.mit.edu	37	1	221875903	221875903	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:221875903C>G	uc001hmy.1	-	4	1482	c.1300G>C	c.(1300-1302)GCT>CCT	p.A434P	DUSP10_uc001hmx.1_Missense_Mutation_p.A92P|DUSP10_uc001hmz.1_Missense_Mutation_p.A92P	NM_007207	NP_009138	Q9Y6W6	DUS10_HUMAN	dual specificity phosphatase 10 isoform a	434	Tyrosine-protein phosphatase.				inactivation of MAPK activity|JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|negative regulation of stress-activated MAPK cascade	Golgi apparatus|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			upper_aerodigestive_tract(1)|lung(1)	2				GBM - Glioblastoma multiforme(131;0.0103)		AATTTATAAGCATCAGTCATG	0.507			NA											96	82					0	0	0.00361	0	0
OBSCN	84033	broad.mit.edu	37	1	228431126	228431126	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:228431126G>T	uc009xez.1	+	10	3216	c.3172G>T	c.(3172-3174)GGC>TGC	p.G1058C	OBSCN_uc001hsn.2_Missense_Mutation_p.G1058C	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1058	Ig-like 10.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGAGGCCAGGGGCCAGAGGGT	0.557			NA											15	40					1.56452e-12	2.53577e-12	0.007413	1	0
GALNT2	2590	broad.mit.edu	37	1	230381813	230381813	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:230381813G>A	uc010pwa.1	+	8	806	c.734G>A	c.(733-735)AGG>AAG	p.R245K	GALNT2_uc010pvy.1_Missense_Mutation_p.R207K|GALNT2_uc010pvz.1_RNA	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	245	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				TTTTAGGACAGGACTCGGGTT	0.463			NA											11	143					0	0	0.001368	0	0
EXOC8	149371	broad.mit.edu	37	1	231472318	231472318	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:231472318C>G	uc001huq.2	-	1	1261	c.1174G>C	c.(1174-1176)GAG>CAG	p.E392Q		NM_175876	NP_787072	Q8IYI6	EXOC8_HUMAN	exocyst complex 84-kDa subunit	392					exocytosis|protein transport	growth cone|nucleus	protein binding			skin(1)	1	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				ACTAGCACCTCAGTGAGCTGT	0.532			NA											5	85					0	0	0.000602	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514969	233514969	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:233514969C>T	uc001hvt.3	+	9	2478	c.2217C>T	c.(2215-2217)CTC>CTT	p.L739L	KIAA1804_uc001hvu.3_Silent_p.L185L	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	739					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				GACTGGACCTCAGAGAGCTTC	0.537			NA											8	89					0	0	0.00308	0	0
RBM34	23029	broad.mit.edu	37	1	235324510	235324510	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:235324510C>G	uc001hwn.2	-	1	62	c.32G>C	c.(31-33)AGA>ACA	p.R11T	RBM34_uc001hwo.2_RNA|ARID4B_uc001hwp.2_RNA|RBM34_uc010pxp.1_Missense_Mutation_p.R11T	NM_015014	NP_055829	P42696	RBM34_HUMAN	RNA binding motif protein 34 isoform 1	11						nucleolus	nucleotide binding|RNA binding			central_nervous_system(1)	1	Ovarian(103;0.0398)	all_cancers(173;0.177)|Prostate(94;0.0166)	OV - Ovarian serous cystadenocarcinoma(106;5.43e-05)|Epithelial(3;0.000121)			ACTTCTCTTTCTCTTCCGTTT	0.622			NA											34	184					0	0	0.006999	0	0
ARID4B	51742	broad.mit.edu	37	1	235416105	235416105	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:235416105C>G	uc001hwq.2	-	6	792	c.294G>C	c.(292-294)GAG>GAC	p.E98D	ARID4B_uc001hwr.2_Missense_Mutation_p.E98D|ARID4B_uc001hws.3_Missense_Mutation_p.E98D|ARID4B_uc001hwu.1_Missense_Mutation_p.E98D	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	98					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TCAGTGTCTTCTCATCTCCGT	0.358			NA											7	123					0	0	0.000978	0	0
RYR2	6262	broad.mit.edu	37	1	237838040	237838040	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:237838040G>T	uc001hyl.1	+	60	8844	c.8724G>T	c.(8722-8724)AAG>AAT	p.K2908N	RYR2_uc010pxz.1_Translation_Start_Site	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2908	Modulator (Potential).|Cytoplasmic (By similarity).|4 X approximate repeats.|4.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GAGGATTTAAGGACCTGGAAC	0.373			NA											17	36					5.35267e-07	8.15205e-07	0.007413	1	0
RYR2	6262	broad.mit.edu	37	1	237947744	237947744	+	Silent	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:237947744C>A	uc001hyl.1	+	90	12852	c.12732C>A	c.(12730-12732)GCC>GCA	p.A4244A	RYR2_uc010pya.1_Silent_p.A659A	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4244	Helical; Name=M3; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCAGGTCGGCCCTGTTTGCGC	0.502			NA											28	16					4.7796e-09	7.51688e-09	0.004656	1	0
FMN2	56776	broad.mit.edu	37	1	240370837	240370837	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:240370837C>G	uc010pyd.1	+	5	2950	c.2725C>G	c.(2725-2727)CCA>GCA	p.P909A	FMN2_uc010pye.1_Missense_Mutation_p.P913A	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	909	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AGAAATGCTGCCACCCCCTCC	0.662			NA											74	56					0	0	0.00361	0	0
OR2M1P	388762	broad.mit.edu	37	1	248285550	248285550	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:248285550C>T	uc001idy.1	+	1	113	c.113C>T	c.(112-114)TCA>TTA	p.S38L		NR_002141				RecName: Full=Olfactory receptor 2M5;												0						TTCTGTGTATCACTGCTTGGC	0.463			NA											29	417					0	0	0.007291	0	0
OR2T4	127074	broad.mit.edu	37	1	248525221	248525221	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:248525221G>T	uc001ieh.1	+	1	339	c.339G>T	c.(337-339)ATG>ATT	p.M113I		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	113	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGCCCAAGATGCTCCTGGACC	0.488			NA											120	133					3.58676e-45	6.55511e-45	0.00361	1	0
OR2T34	127068	broad.mit.edu	37	1	248737411	248737411	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:248737411G>A	uc001iep.1	-	1	648	c.648C>T	c.(646-648)ATC>ATT	p.I216I		NM_001001821	NP_001001821	Q8NGX1	O2T34_HUMAN	olfactory receptor, family 2, subfamily T,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AGATGACCATGATGGGGGTGA	0.572			NA											154	330					0	0	0.00361	0	0
OR2T11	127077	broad.mit.edu	37	1	248789953	248789953	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:248789953G>T	uc001ier.1	-	1	477	c.477C>A	c.(475-477)ATC>ATA	p.I159I		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CATTCATGGTGATGGGAGTGA	0.522			NA											83	65					2.46668e-60	4.57111e-60	0.00361	1	0
PGBD2	267002	broad.mit.edu	37	1	249211644	249211644	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:249211644G>A	uc001ifh.2	+	3	1008	c.861G>A	c.(859-861)GGG>GGA	p.G287G	PGBD2_uc001ifg.2_Silent_p.G36G|PGBD2_uc009xhd.2_Silent_p.G284G	NM_170725	NP_733843	Q6P3X8	PGBD2_HUMAN	hypothetical protein LOC267002 isoform a	287										ovary(1)	1	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.012)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TGCACAGGGGGAAGCCTGTGC	0.547			NA											21	184					0	0	0.001523	0	0
TUBB8	347688	broad.mit.edu	37	10	93453	93453	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:93453C>T	uc001ifi.2	-	4	879	c.879G>A	c.(877-879)ATG>ATA	p.M293I	TUBB8_uc009xhe.2_Missense_Mutation_p.M256I|TUBB8_uc010pzs.1_Missense_Mutation_p.M221I	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	293					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		TAGCATCAAACATCTGCTGGG	0.617	Pancreas(192;2041 3010 9013 18103)		NA											15	214					0	0	0.004007	0	0
CELF2	10659	broad.mit.edu	37	10	11047380	11047380	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:11047380G>A	uc001iki.3	+	1	122	c.30G>A	c.(28-30)ATG>ATA	p.M10I	CELF2_uc010qbi.1_5'UTR|CELF2_uc010qbj.1_Missense_Mutation_p.M10I	NM_001025077	NP_001020248	O95319	CELF2_HUMAN	CUG triplet repeat, RNA binding protein 2	10	Necessary for RNA-binding, TNNT2 exon 5 and NMDA R1 exon 21 inclusion.				mRNA processing|regulation of heart contraction	cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding				0						CTGTTACTATGAGAAATGAAG	0.413			NA											28	253					0	0	0.002096	0	0
ST8SIA6	338596	broad.mit.edu	37	10	17362963	17362963	+	Nonsense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:17362963G>A	uc001ipd.2	-	8	1111	c.1111C>T	c.(1111-1113)CAG>TAG	p.Q371*	ST8SIA6_uc010qce.1_RNA	NM_001004470	NP_001004470	P61647	SIA8F_HUMAN	ST8 alpha-N-acetyl-neuraminide	371	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(1)	1						TTGGGCATCTGATGGAAACCA	0.403			NA											107	104					0	0	0.00361	0	0
ZNF25	219749	broad.mit.edu	37	10	38246370	38246370	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:38246370G>T	uc001ize.1	-	3	225	c.120C>A	c.(118-120)AAC>AAA	p.N40K	ZNF25_uc001izf.1_Missense_Mutation_p.N4K	NM_145011	NP_659448	P17030	ZNF25_HUMAN	zinc finger protein 25	40	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|central_nervous_system(1)	4		all_neural(218;0.0218)|Breast(68;0.0389)|Ovarian(717;0.0443)|Renal(717;0.157)				GGTGACTATAGTTTTCCAGCA	0.428			NA											64	47					4.73848e-44	8.63022e-44	0.00361	1	0
PCDH15	65217	broad.mit.edu	37	10	55569015	55569015	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:55569015C>T	uc010qhs.1	-	37	5205	c.4810G>A	c.(4810-4812)GAG>AAG	p.E1604K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.E1597K|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATTCCTCCTCTGATTCTACA	0.458			NA								HNSCC(58;0.16)			46	25					0	0	0.00361	0	0
PCDH15	65217	broad.mit.edu	37	10	55721652	55721652	+	Nonsense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:55721652C>A	uc001jju.1	-	22	3264	c.2869G>T	c.(2869-2871)GGA>TGA	p.G957*	PCDH15_uc010qhq.1_Nonsense_Mutation_p.G962*|PCDH15_uc010qhr.1_Nonsense_Mutation_p.G957*|PCDH15_uc010qhs.1_Nonsense_Mutation_p.G969*|PCDH15_uc010qht.1_Nonsense_Mutation_p.G964*|PCDH15_uc010qhu.1_Nonsense_Mutation_p.G957*|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Nonsense_Mutation_p.G957*|PCDH15_uc010qhw.1_Nonsense_Mutation_p.G920*|PCDH15_uc010qhx.1_Nonsense_Mutation_p.G886*|PCDH15_uc010qhy.1_Nonsense_Mutation_p.G962*|PCDH15_uc010qhz.1_Nonsense_Mutation_p.G957*|PCDH15_uc010qia.1_Nonsense_Mutation_p.G935*|PCDH15_uc010qib.1_Nonsense_Mutation_p.G935*	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	957	Extracellular (Potential).|Cadherin 9.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCAGGTAATCCCtaaaataaa	0.313			NA								HNSCC(58;0.16)			21	22					7.45023e-12	1.19655e-11	0.001523	1	0
PCDH15	65217	broad.mit.edu	37	10	55955638	55955638	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:55955638G>T	uc001jju.1	-	11	1505	c.1110C>A	c.(1108-1110)GAC>GAA	p.D370E	PCDH15_uc010qhq.1_Missense_Mutation_p.D375E|PCDH15_uc010qhr.1_Missense_Mutation_p.D370E|PCDH15_uc010qhs.1_Missense_Mutation_p.D375E|PCDH15_uc010qht.1_Missense_Mutation_p.D370E|PCDH15_uc010qhu.1_Missense_Mutation_p.D370E|PCDH15_uc001jjv.1_Missense_Mutation_p.D348E|PCDH15_uc010qhv.1_Missense_Mutation_p.D370E|PCDH15_uc010qhw.1_Missense_Mutation_p.D333E|PCDH15_uc010qhx.1_Missense_Mutation_p.D370E|PCDH15_uc010qhy.1_Missense_Mutation_p.D375E|PCDH15_uc010qhz.1_Missense_Mutation_p.D370E|PCDH15_uc010qia.1_Missense_Mutation_p.D348E|PCDH15_uc010qib.1_Missense_Mutation_p.D348E|PCDH15_uc001jjw.2_Missense_Mutation_p.D370E	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	370	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GATGACCATTGTCTTGTTCAG	0.343			NA								HNSCC(58;0.16)			30	13					6.04164e-23	1.04643e-22	0.002096	1	0
CCAR1	55749	broad.mit.edu	37	10	70548067	70548067	+	Silent	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:70548067T>C	uc001joo.2	+	23	3288	c.3169T>C	c.(3169-3171)TTA>CTA	p.L1057L	CCAR1_uc010qiz.1_Silent_p.L1042L|CCAR1_uc010qjb.1_RNA	NM_018237	NP_060707	Q8IX12	CCAR1_HUMAN	cell-cycle and apoptosis regulatory protein 1	1057	Potential.				apoptosis|cell cycle|nuclear mRNA splicing, via spliceosome|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm|perinuclear region of cytoplasm	calcium ion binding|nucleic acid binding|protein binding			ovary(6)|large_intestine(1)	7						GAAGCTGCAGTTACTAGAAGA	0.343			NA											3	58					0	0	0.000248	0	0
NOC3L	64318	broad.mit.edu	37	10	96121522	96121522	+	Silent	SNP	G	G	A	rs150977777		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:96121522G>A	uc001kjq.1	-	2	205	c.117C>T	c.(115-117)CTC>CTT	p.L39L	NOC3L_uc009xuk.1_5'UTR	NM_022451	NP_071896	Q8WTT2	NOC3L_HUMAN	nucleolar complex associated 3 homolog	39						nuclear speck|nucleolus	binding			ovary(1)	1		Colorectal(252;0.0897)				GGTACTTCTTGAGAGTGCTTT	0.368			NA											12	145					0	0	0.000978	0	0
PDZD7	79955	broad.mit.edu	37	10	102789858	102789858	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:102789858G>T	uc001kso.1	-	2	334	c.119C>A	c.(118-120)ACG>AAG	p.T40K	PDZD7_uc001ksn.2_Missense_Mutation_p.T40K|SFXN3_uc001ksp.2_5'Flank|SFXN3_uc001ksq.2_5'Flank|SFXN3_uc010qpx.1_5'Flank	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	40						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		CAGGTATCGCGTTGCGGTGGA	0.657			NA											18	88					1.56452e-12	2.53577e-12	0.007413	1	0
C10orf81	79949	broad.mit.edu	37	10	115535537	115535537	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:115535537G>C	uc001lat.1	+	10	1505	c.943G>C	c.(943-945)GAA>CAA	p.E315Q	C10orf81_uc001lar.1_Missense_Mutation_p.E335Q|C10orf81_uc009xyc.1_Missense_Mutation_p.E233Q|C10orf81_uc001las.1_Missense_Mutation_p.E233Q|C10orf81_uc001lau.1_Missense_Mutation_p.E149Q	NM_024889	NP_079165	Q5SXH7	CJ081_HUMAN	hypothetical protein LOC79949	329										central_nervous_system(1)	1		Colorectal(252;0.175)		Epithelial(162;0.0181)|all cancers(201;0.0204)		TATCCCCGATGAAAGCCAAGT	0.433			NA											27	98					0	0	0.004656	0	0
PDZD8	118987	broad.mit.edu	37	10	119044119	119044119	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:119044119T>C	uc001lde.1	-	5	2324	c.2125A>G	c.(2125-2127)AGG>GGG	p.R709G		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	709					intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		TTTAAGTACCTGTGACAGGCT	0.413			NA											60	60					0	0	0.00361	0	0
DMBT1	1755	broad.mit.edu	37	10	124336136	124336136	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:124336136G>T	uc001lgk.1	+	7	611	c.505G>T	c.(505-507)GTG>TTG	p.V169L	DMBT1_uc001lgl.1_Missense_Mutation_p.V169L|DMBT1_uc001lgm.1_Missense_Mutation_p.V169L|DMBT1_uc009xzz.1_Missense_Mutation_p.V169L|DMBT1_uc010qtx.1_Missense_Mutation_p.V169L|DMBT1_uc009yaa.1_Missense_Mutation_p.V21L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	169	SRCR 1.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCTGGATGATGTGCGCTGCTC	0.587	Ovarian(182;93 2026 18125 22222 38972)		NA											135	90					9.89263e-63	1.84616e-62	0.00361	1	0
C10orf137	26098	broad.mit.edu	37	10	127414386	127414386	+	Silent	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:127414386A>G	uc001liq.1	+	6	1064	c.771A>G	c.(769-771)GAA>GAG	p.E257E	C10orf137_uc001lin.2_Silent_p.E257E|C10orf137_uc001lio.1_Silent_p.E257E|C10orf137_uc001lip.1_5'UTR	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	257					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				CAGTTTCTGAAGATCCCAGTG	0.413			NA											33	41					0	0	0.003755	0	0
Unknown	0	broad.mit.edu	37	10	134627716	134627716	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:134627716C>T	uc010qux.1	-	46	6506	c.6506G>A	c.(6505-6507)AGA>AAA	p.R2169K		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.												NA						GTCTTGGAATCTTTCCAAAAT	0.537			NA											4	52					0	0	0.001168	0	0
MUC5B	727897	broad.mit.edu	37	11	1262528	1262528	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:1262528G>A	uc009ycr.1	+	47	6623	c.6497G>A	c.(6496-6498)AGC>AAC	p.S2166N	MUC5B_uc001ltb.2_Missense_Mutation_p.S1476N	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1473	7 X Cys-rich subdomain repeats.|Thr-rich.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GTGACCCCGAGCATCCGGTCG	0.692			NA											4	6					0	0	0.000248	0	0
KCNQ1	3784	broad.mit.edu	37	11	2592631	2592631	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:2592631C>T	uc001lwn.2	+	4	789	c.681C>T	c.(679-681)ATC>ATT	p.I227I	KCNQ1_uc009ydp.1_Intron|KCNQ1_uc001lwo.2_Silent_p.I100I	NM_000218	NP_000209	P51787	KCNQ1_HUMAN	potassium voltage-gated channel, KQT-like	227	Helical; Voltage-sensor; Name=Segment S4; (Potential).				blood circulation|membrane depolarization|muscle contraction|sensory perception of sound		delayed rectifier potassium channel activity|protein binding			ovary(1)	1		all_epithelial(84;3.26e-05)|Breast(177;0.001)|Medulloblastoma(188;0.00111)|Ovarian(85;0.00158)|all_neural(188;0.00725)|all_lung(207;0.11)|Lung NSC(207;0.159)		BRCA - Breast invasive adenocarcinoma(625;0.00251)|Lung(200;0.131)	Bepridil(DB01244)|Indapamide(DB00808)	CGTCGGCCATCAGGTGCGTCT	0.677			NA											7	29					0	0	0.001984	0	0
USH1C	10083	broad.mit.edu	37	11	17553076	17553076	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:17553076C>G	uc001mnf.2	-	3	227	c.118G>C	c.(118-120)GCC>CCC	p.A40P	USH1C_uc001mne.2_Missense_Mutation_p.A40P|USH1C_uc009yhb.2_Missense_Mutation_p.A40P|USH1C_uc001mng.2_RNA|USH1C_uc001mnd.2_Missense_Mutation_p.A4P	NM_005709	NP_005700	Q9Y6N9	USH1C_HUMAN	harmonin isoform a	40					equilibrioception|G2/M transition of mitotic cell cycle|photoreceptor cell maintenance|sensory perception of sound	apical part of cell|cytoplasm|stereocilium	protein binding			ovary(1)	1						ACGAGCACGGCCACGTCCATG	0.602			NA											7	21					0	0	0.00308	0	0
NELL1	4745	broad.mit.edu	37	11	20907031	20907031	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:20907031C>T	uc001mqe.2	+	5	701	c.548C>T	c.(547-549)CCC>CTC	p.P183L	NELL1_uc001mqf.2_Missense_Mutation_p.P183L|NELL1_uc009yid.2_Missense_Mutation_p.P211L|NELL1_uc010rdo.1_Missense_Mutation_p.P126L|NELL1_uc010rdp.1_Intron	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	183	TSP N-terminal.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						ACCAACCTTCCCCCAGGAATC	0.418			NA											8	27					0	0	0.00308	0	0
OR5D14	219436	broad.mit.edu	37	11	55563503	55563503	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:55563503C>A	uc010rim.1	+	1	472	c.472C>A	c.(472-474)CCC>ACC	p.P158T		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	158	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				CATGTTTGGCCCCTTGGTACT	0.493			NA											78	54					4.00405e-42	7.24282e-42	0.00361	1	0
OR5T3	390154	broad.mit.edu	37	11	56019936	56019936	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:56019936C>A	uc010rjd.1	+	1	261	c.261C>A	c.(259-261)AAC>AAA	p.N87K		NM_001004747	NP_001004747	Q8NGG3	OR5T3_HUMAN	olfactory receptor, family 5, subfamily T,	87	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(21;0.00448)					GGCTCCACAACCCCATGTATT	0.353			NA											14	55					7.93312e-07	1.19788e-06	0.00245	1	0
OR8K3	219473	broad.mit.edu	37	11	56085785	56085785	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:56085785G>T	uc010rjf.1	+	1	3	c.3G>T	c.(1-3)ATG>ATT	p.M1I		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					GAACCTGGATGGAACAACACA	0.393			NA											15	36					2.32078e-09	3.68268e-09	0.003163	1	0
PYGM	5837	broad.mit.edu	37	11	64519513	64519513	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:64519513C>T	uc001oax.3	-	14	2468	c.1651G>A	c.(1651-1653)GAG>AAG	p.E551K	PYGM_uc001oay.3_Missense_Mutation_p.E463K	NM_005609	NP_005600	P11217	PYGM_HUMAN	muscle glycogen phosphorylase isoform 1	551					glucose metabolic process|glycogen catabolic process	cytosol	glycogen phosphorylase activity|protein binding			ovary(2)	2					Pyridoxal Phosphate(DB00114)	TATTCCCTCTCTAGGTAGGCA	0.512			NA											17	104					0	0	0.006122	0	0
CAPN5	726	broad.mit.edu	37	11	76829300	76829300	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:76829300G>C	uc001oxx.2	+	8	1254	c.1069G>C	c.(1069-1071)GCC>CCC	p.A357P	CAPN5_uc009yup.2_Missense_Mutation_p.A397P|CAPN5_uc009yuq.2_Missense_Mutation_p.A393P|CAPN5_uc001oxy.2_Missense_Mutation_p.A397P|CAPN5_uc001oya.2_5'Flank	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	357	Domain III.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						GTGGGAGGAGGCCCGGCTGCA	0.612			NA											14	14					0	0	0.004007	0	0
PANX1	24145	broad.mit.edu	37	11	93862636	93862636	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:93862636C>T	uc001per.2	+	1	543	c.158C>T	c.(157-159)GCC>GTC	p.A53V	uc001pen.1_5'Flank|PANX1_uc001peq.2_Missense_Mutation_p.A53V	NM_015368	NP_056183	Q96RD7	PANX1_HUMAN	pannexin 1	53	Helical; (Potential).				positive regulation of interleukin-1 beta secretion|protein hexamerization|synaptic transmission	bleb|endoplasmic reticulum membrane|gap junction|integral to membrane	calcium channel activity|gap junction hemi-channel activity|leak channel activity|receptor binding				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				ATCTCGCTGGCCTTCGCGCAG	0.662			NA											4	28					0	0	0.000248	0	0
ENDOD1	23052	broad.mit.edu	37	11	94862354	94862354	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:94862354A>G	uc001pfh.2	+	2	1189	c.1114A>G	c.(1114-1116)ATA>GTA	p.I372V		NM_015036	NP_055851	O94919	ENDD1_HUMAN	endonuclease domain containing 1 precursor	372						extracellular region	endonuclease activity|metal ion binding|nucleic acid binding				0		Acute lymphoblastic leukemia(157;2.33e-05)|all_hematologic(158;0.00824)				GATTAATGGCATAGAAAGTTG	0.443			NA											20	58					0	0	0.002299	0	0
TRPC6	7225	broad.mit.edu	37	11	101341974	101341974	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:101341974C>A	uc001pgk.3	-	9	2774	c.2349G>T	c.(2347-2349)TGG>TGT	p.W783C	TRPC6_uc009ywy.2_Missense_Mutation_p.W667C|TRPC6_uc009ywz.1_Missense_Mutation_p.W728C	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	783	Cytoplasmic (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		GCTCAGAAATCCATTTTTTAA	0.398	Colon(166;1315 1927 11094 12848 34731)		NA											58	58					8.33888e-18	1.39861e-17	0.00361	1	0
SCN2B	6327	broad.mit.edu	37	11	118038984	118038984	+	Silent	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:118038984A>G	uc001psf.2	-	3	455	c.264T>C	c.(262-264)ATT>ATC	p.I88I		NM_004588	NP_004579	O60939	SCN2B_HUMAN	sodium channel, voltage-gated, type II, beta	88	Ig-like C2-type.|Extracellular (Potential).				synaptic transmission	voltage-gated sodium channel complex	voltage-gated sodium channel activity				0	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.19e-05)|Epithelial(105;0.00117)		GCTTCAGGTTAATGATCTTCA	0.562			NA											11	35					0	0	0.008291	0	0
OR8B12	219858	broad.mit.edu	37	11	124412753	124412753	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:124412753G>T	uc010sam.1	-	1	798	c.798C>A	c.(796-798)CCC>CCA	p.P266P		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		CTTGCTCGAGGGGCAGGATGG	0.443			NA											11	38					7.03913e-09	1.10377e-08	0.001368	1	0
ADAMTS15	170689	broad.mit.edu	37	11	130343387	130343387	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:130343387C>T	uc010scd.1	+	8	2524	c.2524C>T	c.(2524-2526)CGC>TGC	p.R842C		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	842	TSP type-1 2.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GCCCCCTGCACGCTGGGTGGC	0.721			NA											6	77					0	0	0.001168	0	0
SNX19	399979	broad.mit.edu	37	11	130784592	130784592	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr11:130784592C>T	uc001qgk.3	-	1	1791	c.1243G>A	c.(1243-1245)GAT>AAT	p.D415N	SNX19_uc010sce.1_Intron|SNX19_uc010scf.1_5'UTR|SNX19_uc010scg.1_Intron|SNX19_uc001qgl.3_Missense_Mutation_p.D415N|SNX19_uc009zcx.1_Intron	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	415					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		GCCTCACCATCTTTGGGTTCC	0.552			NA											17	17					0	0	0.001882	0	0
WNK1	65125	broad.mit.edu	37	12	994563	994563	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:994563G>A	uc001qio.3	+	19	5100	c.4593G>A	c.(4591-4593)AAG>AAA	p.K1531K	WNK1_uc001qip.3_Silent_p.K1284K|WNK1_uc001qir.3_Silent_p.K704K	NM_018979	NP_061852	Q9H4A3	WNK1_HUMAN	WNK lysine deficient protein kinase 1	1531					intracellular protein kinase cascade|ion transport|neuron development	cytoplasm	ATP binding|protein binding|protein kinase inhibitor activity|protein serine/threonine kinase activity			stomach(6)|breast(6)|ovary(5)|lung(4)|large_intestine(1)|central_nervous_system(1)	23	all_cancers(10;0.00611)|all_epithelial(11;0.00825)|all_lung(10;0.0331)|Ovarian(42;0.0512)|Lung NSC(10;0.0632)		Epithelial(1;1.74e-08)|all cancers(1;7.04e-08)|OV - Ovarian serous cystadenocarcinoma(31;0.000423)|BRCA - Breast invasive adenocarcinoma(9;0.0149)|Colorectal(1;0.0197)			CACTAGATAAGACATCTCATA	0.478	Colon(19;451 567 6672 12618 28860)		NA											7	423					0	0	0.001984	0	0
VWF	7450	broad.mit.edu	37	12	6143932	6143932	+	Silent	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:6143932C>G	uc001qnn.1	-	20	2857	c.2607G>C	c.(2605-2607)ACG>ACC	p.T869T	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	869	VWFD 3.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCATGCCGATCGTGGAGCACG	0.582			NA											21	42					0	0	0.00278	0	0
ATN1	1822	broad.mit.edu	37	12	7043174	7043174	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:7043174C>T	uc001qrw.1	+	2	247	c.10C>T	c.(10-12)CGA>TGA	p.R4*	ATN1_uc001qrx.1_Nonsense_Mutation_p.R4*|ATN1_uc001qry.1_Nonsense_Mutation_p.R4*	NM_001007026	NP_001007027	P54259	ATN1_HUMAN	atrophin-1	4					cell death|central nervous system development	cytoplasm|nucleus	protein domain specific binding			ovary(2)|breast(2)|pancreas(1)|skin(1)	6						AATGAAGACACGACAGAATAA	0.498			NA											9	10					0	0	0.006214	0	0
LRP6	4040	broad.mit.edu	37	12	12302005	12302005	+	Missense_Mutation	SNP	C	C	T	rs146852380		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:12302005C>T	uc001rah.3	-	14	3219	c.3077G>A	c.(3076-3078)CGC>CAC	p.R1026H	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Missense_Mutation_p.R1026H	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	1026	Extracellular (Potential).|LDL-receptor class B 17.|Beta-propeller 4.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				GTAGATGTAGCGGCTGTAAAT	0.453			NA											79	138					0	0	0.00361	0	0
ABCC9	10060	broad.mit.edu	37	12	22063859	22063859	+	Silent	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:22063859T>A	uc001rfi.1	-	7	1085	c.1065A>T	c.(1063-1065)GCA>GCT	p.A355A	ABCC9_uc001rfh.2_Silent_p.A355A|ABCC9_uc001rfj.1_Silent_p.A355A	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	355	ABC transmembrane type-1 1.|Helical; Name=7; (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGAGAAGAACTGCTAGAACGT	0.403			NA											28	44					0	0	0.00632	0	0
NEUROD4	58158	broad.mit.edu	37	12	55421034	55421034	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:55421034C>G	uc001sgp.3	+	2	1189	c.811C>G	c.(811-813)CCT>GCT	p.P271A		NM_021191	NP_067014	Q9HD90	NDF4_HUMAN	neurogenic differentiation 4	271					amacrine cell differentiation|positive regulation of cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4						AGATGGGTCTCCTGACCTAGA	0.532			NA											31	117					0	0	0.007291	0	0
SLC26A10	65012	broad.mit.edu	37	12	58018721	58018721	+	Missense_Mutation	SNP	C	C	T	rs146389619	by1000genomes	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:58018721C>T	uc001spe.2	+	10	1611	c.1300C>T	c.(1300-1302)CGC>TGC	p.R434C	SLC26A10_uc001spf.2_RNA|SLC26A10_uc009zpz.1_RNA	NM_133489	NP_597996	Q8NG04	S2610_HUMAN	solute carrier family 26, member 10	434	STAS.					integral to membrane	antiporter activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					TGGGCAGTTTCGCTGCAACCT	0.572			NA											10	71					0	0	0.001855	0	0
NAV3	89795	broad.mit.edu	37	12	78400423	78400423	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:78400423C>A	uc001syp.2	+	8	1278	c.1105C>A	c.(1105-1107)CCT>ACT	p.P369T	NAV3_uc001syo.2_Missense_Mutation_p.P369T	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	369						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						ACTGAAGCCACCTGTCTCAGA	0.527			NA								HNSCC(70;0.22)			31	30					0.00127121	0.00183581	0.007291	1	0
TRPV4	59341	broad.mit.edu	37	12	110236509	110236509	+	Silent	SNP	G	G	A	rs115446386	by1000genomes	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:110236509G>A	uc001tpj.1	-	5	1157	c.1062C>T	c.(1060-1062)GCC>GCT	p.A354A	TRPV4_uc001tpg.1_Silent_p.A320A|TRPV4_uc001tph.1_Silent_p.A307A|TRPV4_uc001tpi.1_Silent_p.A307A|TRPV4_uc001tpk.1_Silent_p.A354A|TRPV4_uc001tpl.1_Silent_p.A354A	NM_021625	NP_067638	Q9HBA0	TRPV4_HUMAN	transient receptor potential cation channel,	354	Cytoplasmic (Potential).				actin cytoskeleton reorganization|actin filament organization|calcium ion import|cell death|cell volume homeostasis|cell-cell junction assembly|cellular hypotonic response|cortical microtubule organization|elevation of cytosolic calcium ion concentration|microtubule polymerization|negative regulation of neuron projection development|osmosensory signaling pathway|positive regulation of microtubule depolymerization|response to mechanical stimulus	cortical actin cytoskeleton|filopodium|focal adhesion|growth cone|integral to membrane|lamellipodium|ruffle membrane	actin filament binding|alpha-tubulin binding|beta-tubulin binding|calcium channel activity|calmodulin binding|microtubule binding|protein binding|protein kinase C binding|SH2 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						GGAAGAGGCGGGCACACTTGA	0.592			NA											16	25					0	0	0.003163	0	0
GPN3	51184	broad.mit.edu	37	12	110891576	110891576	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:110891576C>T	uc001tqr.2	-	7	820	c.764G>A	c.(763-765)GGA>GAA	p.G255E	GPN3_uc001tqs.2_Missense_Mutation_p.G265E	NM_016301	NP_057385	Q9UHW5	GPN3_HUMAN	GPN-loop GTPase 3 isoform 1	255						protein complex	GTP binding				0						TAGGTCTTCTCCATATTGAAT	0.358			NA											10	35					0	0	0.006214	0	0
LHX5	64211	broad.mit.edu	37	12	113907084	113907084	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:113907084G>A	uc001tvj.1	-	2	814	c.240C>T	c.(238-240)GCC>GCT	p.A80A		NM_022363	NP_071758	Q9H2C1	LHX5_HUMAN	LIM homeobox protein 5	80	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CTTTGCTCCGGGCCTTGCGCA	0.592			NA											34	45					0	0	0.005524	0	0
DNAH10	196385	broad.mit.edu	37	12	124349195	124349195	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:124349195C>G	uc001uft.3	+	39	6633	c.6608C>G	c.(6607-6609)TCT>TGT	p.S2203C		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2203	AAA 2 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		AACATGAATTCTGTGATGGAT	0.473			NA											3	43					0	0	0.004672	0	0
DNAH10	196385	broad.mit.edu	37	12	124379262	124379262	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:124379262C>A	uc001uft.3	+	53	8943	c.8918C>A	c.(8917-8919)TCC>TAC	p.S2973Y		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	2973	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GTCGCAAAGTCCTTTCTAGGT	0.398			NA											10	12					0.00010058	0.000147666	0.001368	1	0
NCOR2	9612	broad.mit.edu	37	12	124857117	124857117	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr12:124857117G>C	uc010tba.1	-	20	2375	c.2258C>G	c.(2257-2259)TCT>TGT	p.S753C	NCOR2_uc010tay.1_Missense_Mutation_p.S753C|NCOR2_uc010taz.1_Missense_Mutation_p.S736C|NCOR2_uc010tbb.1_Missense_Mutation_p.S753C|NCOR2_uc010tbc.1_Missense_Mutation_p.S735C|NCOR2_uc001ugj.1_Missense_Mutation_p.S753C	NM_001077261	NP_001070729	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 2	753					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		AGTGTGAGGAGAGGGGATGCT	0.672			NA											32	47					0	0	0.002836	0	0
MTUS2	23281	broad.mit.edu	37	13	29599154	29599154	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr13:29599154G>A	uc001usl.3	+	1	407	c.349G>A	c.(349-351)GAA>AAA	p.E117K		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	107						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						CATTCAGAGGGAACTCAATGA	0.493			NA											8	51					0	0	0.004482	0	0
ELF1	1997	broad.mit.edu	37	13	41533103	41533103	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr13:41533103C>A	uc001uxs.2	-	3	495	c.122G>T	c.(121-123)GGT>GTT	p.G41V	ELF1_uc010tfc.1_Missense_Mutation_p.G41V|ELF1_uc010acd.2_5'UTR	NM_172373	NP_758961	P32519	ELF1_HUMAN	E74-like factor 1 (ets domain transcription	41					positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Lung NSC(96;8.3e-05)|Prostate(109;0.0233)|Breast(139;0.0296)|Lung SC(185;0.0367)		all cancers(112;1.87e-08)|Epithelial(112;8.45e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000202)|GBM - Glioblastoma multiforme(144;0.00266)|BRCA - Breast invasive adenocarcinoma(63;0.072)		AATATCAGCACCAGGAACATG	0.423			NA											24	43					1.1804e-14	1.94894e-14	0.003954	1	0
KBTBD6	89890	broad.mit.edu	37	13	41704721	41704721	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr13:41704721C>G	uc001uxu.1	-	1	2216	c.1927G>C	c.(1927-1929)GAA>CAA	p.E643Q	KBTBD6_uc010ace.1_Intron|KBTBD6_uc010tfe.1_Missense_Mutation_p.E577Q|uc001uxv.1_5'Flank	NM_152903	NP_690867	Q86V97	KBTB6_HUMAN	kelch repeat and BTB (POZ) domain-containing 6	643	Kelch 6.						protein binding			ovary(1)|skin(1)	2		Lung NSC(96;4.52e-06)|Breast(139;0.00123)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(98;0.114)		all cancers(112;4.08e-09)|Epithelial(112;4.74e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000131)|GBM - Glioblastoma multiforme(144;0.000876)|BRCA - Breast invasive adenocarcinoma(63;0.0673)		AAGTCCCATTCAGTGCTAGAC	0.448			NA											5	30					0	0	0.000602	0	0
ITM2B	9445	broad.mit.edu	37	13	48832951	48832951	+	Nonsense_Mutation	SNP	C	C	T	rs11556901		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr13:48832951C>T	uc001vbz.3	+	5	806	c.583C>T	c.(583-585)CAG>TAG	p.Q195*		NM_021999	NP_068839	Q9Y287	ITM2B_HUMAN	integral membrane protein 2B	195	BRICHOS.|Lumenal (Potential).				nervous system development	Golgi membrane|integral to membrane|nucleus|plasma membrane	beta-amyloid binding				0		all_cancers(8;2.2e-31)|all_epithelial(8;6.77e-15)|all_lung(13;9.67e-07)|all_hematologic(8;9.72e-06)|Lung NSC(96;8.3e-05)|Breast(56;0.000141)|Acute lymphoblastic leukemia(8;0.00045)|Prostate(109;0.000669)|Myeloproliferative disorder(33;0.039)|Hepatocellular(98;0.0556)|Lung SC(185;0.102)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(144;1.97e-06)		CTATTTGCCTCAGTCCTATCT	0.373			NA											5	45					0	0	0.001168	0	0
PCDH20	64881	broad.mit.edu	37	13	61986420	61986420	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr13:61986420C>G	uc001vid.3	-	2	2176	c.1812G>C	c.(1810-1812)AAG>AAC	p.K604N	PCDH20_uc010thj.1_Missense_Mutation_p.K604N	NM_022843	NP_073754	Q8N6Y1	PCD20_HUMAN	protocadherin 20	577	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|breast(1)|central_nervous_system(1)	6		Breast(118;0.195)|Prostate(109;0.229)		GBM - Glioblastoma multiforme(99;0.000118)		TGTATCTGTACTTTTCTTTCT	0.453			NA											34	30					0	0	0.003755	0	0
COL4A2	1284	broad.mit.edu	37	13	111160425	111160425	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr13:111160425G>C	uc001vqx.2	+	47	5027	c.4738G>C	c.(4738-4740)GAG>CAG	p.E1580Q		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1580	Collagen IV NC1.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			GCCCGTGGCCGAGGACGAGAT	0.617			NA											8	53					0	0	0.004482	0	0
TMEM55B	90809	broad.mit.edu	37	14	20926779	20926779	+	Missense_Mutation	SNP	A	A	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:20926779A>C	uc001vxl.2	-	7	926	c.773T>G	c.(772-774)TTG>TGG	p.L258W	TMEM55B_uc001vxk.2_Missense_Mutation_p.L265W	NM_144568	NP_653169	Q86T03	TM55B_HUMAN	transmembrane protein 55B isoform 2	258	Helical; (Potential).					integral to membrane|late endosome membrane|lysosomal membrane	hydrolase activity				0	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;1.09e-07)|all cancers(55;1.19e-06)	GBM - Glioblastoma multiforme(265;0.0224)|READ - Rectum adenocarcinoma(17;0.193)		AGCCCGGCCCAAACACAGCAC	0.557			NA											23	38					0	0	0.00278	0	0
JUB	84962	broad.mit.edu	37	14	23450742	23450742	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:23450742C>A	uc001whz.2	-	1	1110	c.734G>T	c.(733-735)GGA>GTA	p.G245V		NM_032876	NP_116265	Q96IF1	JUB_HUMAN	ajuba isoform 1	245	PreLIM.				cell cycle|gene silencing by miRNA|positive regulation of protein complex assembly	cell-cell junction|cytoplasmic mRNA processing body|microtubule organizing center	alpha-catenin binding|zinc ion binding				0	all_cancers(95;4.6e-05)			GBM - Glioblastoma multiforme(265;0.0122)		CGCTCCCACTCCGGCCCCGGC	0.736	Esophageal Squamous(134;328 1721 9795 37986 41605)		NA											3	3					8.12818e-05	0.000119998	0.001984	1	0
MBIP	51562	broad.mit.edu	37	14	36785917	36785917	+	Silent	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:36785917T>C	uc001wtm.2	-	2	319	c.231A>G	c.(229-231)CAA>CAG	p.Q77Q	MBIP_uc001wto.2_Silent_p.Q77Q|MBIP_uc010tpy.1_5'UTR|MBIP_uc001wtn.2_Silent_p.Q77Q	NM_016586	NP_057670	Q9NS73	MBIP1_HUMAN	MAP3K12 binding inhibitory protein 1 isoform 1	77					histone H3 acetylation|inactivation of MAPK activity involved in osmosensory signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm|nucleolus	identical protein binding|protein kinase inhibitor activity				0	all_cancers(3;1.55e-52)|all_epithelial(1;2.69e-62)|Breast(36;0.0505)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.28e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.0303)|all cancers(34;0.0781)	GBM - Glioblastoma multiforme(112;0.0191)		ATAAAATGTGTTGTTCAAGTG	0.363			NA											21	25					0	0	0.00278	0	0
NKX2-8	26257	broad.mit.edu	37	14	37051560	37051560	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:37051560C>T	uc001wtx.2	-	1	227	c.35G>A	c.(34-36)CGC>CAC	p.R12H		NM_014360	NP_055175	O15522	NKX28_HUMAN	NK2 homeobox 8	12					liver development|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Breast(36;0.143)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.12e-09)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.00357)|all cancers(34;0.0113)|LUSC - Lung squamous cell carcinoma(13;0.0189)	GBM - Glioblastoma multiforme(112;0.0171)		TAGAAGGCTGCGCACGGTGAA	0.726			NA											9	25					0	0	0.006214	0	0
MDGA2	161357	broad.mit.edu	37	14	47530459	47530459	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:47530459G>T	uc001wwj.3	-	7	1507	c.1311C>A	c.(1309-1311)AGC>AGA	p.S437R	MDGA2_uc001wwi.3_Missense_Mutation_p.S208R|MDGA2_uc010ani.2_Missense_Mutation_p.A6E	NM_001113498	NP_001106970	Q7Z553	MDGA2_HUMAN	MAM domain containing 1 isoform 1	437					spinal cord motor neuron differentiation	anchored to membrane|plasma membrane				ovary(4)|large_intestine(1)|pancreas(1)	6						TACCTGTGCTGCTGGATATAT	0.318			NA											10	63					0.00621372	0.00890073	0.006214	1	0
VTI1B	10490	broad.mit.edu	37	14	68123177	68123177	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:68123177C>G	uc001xjt.2	-	4	892	c.496G>C	c.(496-498)GAG>CAG	p.E166Q	VTI1B_uc010aqp.2_Missense_Mutation_p.E105Q|VTI1B_uc001xju.2_Missense_Mutation_p.E125Q	NM_006370	NP_006361	Q9UEU0	VTI1B_HUMAN	vesicle transport through interaction with	166	Potential.|Cytoplasmic (Potential).				cell proliferation|cellular membrane fusion|intracellular protein transport|vesicle docking involved in exocytosis	endomembrane system|integral to membrane					0				all cancers(60;0.000344)|OV - Ovarian serous cystadenocarcinoma(108;0.00212)|BRCA - Breast invasive adenocarcinoma(234;0.00941)		TCCCCCAGCTCTTCTATGATT	0.522			NA											4	152					0	0	0.001168	0	0
SLC8A3	6547	broad.mit.edu	37	14	70512864	70512864	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:70512864C>T	uc001xly.2	-	8	3338	c.2584G>A	c.(2584-2586)GCC>ACC	p.A862T	SLC8A3_uc001xlu.2_Missense_Mutation_p.A219T|SLC8A3_uc001xlv.2_Missense_Mutation_p.A233T|SLC8A3_uc001xlw.2_Missense_Mutation_p.A859T|SLC8A3_uc001xlx.2_Missense_Mutation_p.A860T|SLC8A3_uc001xlz.2_Missense_Mutation_p.A856T|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_3'UTR	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	862	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		ACGGAGAAGGCCAGTGTGCCG	0.647			NA									OREG0022773	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	23					0	0	0.008871	0	0
GTF2A1	2957	broad.mit.edu	37	14	81659125	81659125	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:81659125T>A	uc001xvf.1	-	7	1103	c.671A>T	c.(670-672)CAG>CTG	p.Q224L	GTF2A1_uc010atb.1_Missense_Mutation_p.Q174L|GTF2A1_uc001xvg.1_Missense_Mutation_p.Q185L	NM_015859	NP_056943	P52655	TF2AA_HUMAN	TFIIA alpha, p55 isoform 1	224					regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|transcription factor TFIIA complex	DNA binding|protein binding|protein heterodimerization activity|TBP-class protein binding|transcription coactivator activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0287)		TAAGATTTGCTGAGGCTGGAT	0.463			NA											103	92					0	0	0.00361	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102455115	102455115	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:102455115G>C	uc001yks.2	+	10	2958	c.2794G>C	c.(2794-2796)GAT>CAT	p.D932H		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	932	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						ACAAGCTGAAGATAAAGCAGA	0.458			NA											4	53					0	0	0.000602	0	0
AHNAK2	113146	broad.mit.edu	37	14	105413076	105413076	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:105413076G>C	uc010axc.1	-	7	8832	c.8712C>G	c.(8710-8712)TTC>TTG	p.F2904L	AHNAK2_uc001ypx.2_Missense_Mutation_p.F2804L	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	2904						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGGCATCTTGAAACTGGGCA	0.647			NA											8	296					0	0	0.006214	0	0
RASGRP1	10125	broad.mit.edu	37	15	38805044	38805044	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:38805044G>A	uc001zke.3	-	7	967	c.789C>T	c.(787-789)CTC>CTT	p.L263L	RASGRP1_uc010bbe.2_RNA|RASGRP1_uc010bbf.2_Silent_p.L125L|RASGRP1_uc010bbg.2_Silent_p.L125L|RASGRP1_uc001zkd.3_Silent_p.L263L	NM_005739	NP_005730	O95267	GRP1_HUMAN	RAS guanyl releasing protein 1 isoform a	263	Ras-GEF.				cell differentiation|platelet activation|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol|endoplasmic reticulum membrane|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|lipid binding|protein binding			large_intestine(1)|ovary(1)	2		all_cancers(109;6.38e-17)|all_epithelial(112;5.51e-15)|Lung NSC(122;2.12e-11)|all_lung(180;5.63e-10)|Melanoma(134;0.0574)		GBM - Glioblastoma multiforme(113;1.97e-07)|BRCA - Breast invasive adenocarcinoma(123;0.00248)		TGGGGCGGCTGAGAACCATCA	0.502			NA											4	9					0	0	0.000248	0	0
CATSPER2	117155	broad.mit.edu	37	15	43940128	43940128	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:43940128G>C	uc001zsh.2	-	2	347	c.132C>G	c.(130-132)ATC>ATG	p.I44M	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Missense_Mutation_p.I44M|CATSPER2_uc001zsj.2_Missense_Mutation_p.I44M|CATSPER2_uc001zsk.2_Missense_Mutation_p.I44M|CATSPER2_uc001zsl.1_Intron	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	44	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		GTAACTCCCTGATAGTGTGCC	0.453			NA											26	88					0	0	0.005443	0	0
PKM2	5315	broad.mit.edu	37	15	72495446	72495446	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:72495446G>A	uc002atx.1	-	9	1465	c.1224C>T	c.(1222-1224)CTC>CTT	p.L408L	PKM2_uc002atr.1_5'Flank|PKM2_uc002ats.1_Intron|PKM2_uc002att.1_Silent_p.L174L|PKM2_uc002atu.1_Intron|PKM2_uc010bit.1_Silent_p.L413L|PKM2_uc010uki.1_Silent_p.L482L|PKM2_uc002atv.1_Silent_p.L443L|PKM2_uc002atw.1_Silent_p.L408L|PKM2_uc002aty.1_Intron|PKM2_uc010ukj.1_Intron|PKM2_uc010ukk.1_Intron|PKM2_uc010biu.1_Silent_p.L429L|PKM2_uc002atz.1_Intron	NM_182471	NP_872271	P14618	KPYM_HUMAN	pyruvate kinase, muscle isoform M1	408	Intersubunit contact.|Interaction with POU5F1.				glycolysis|programmed cell death	cytosol|nucleus|plasma membrane	ATP binding|magnesium ion binding|potassium ion binding|protein binding|pyruvate kinase activity			breast(1)	1					Pyruvic acid(DB00119)	TGGCTTCCATGAGGTCTGTGG	0.537			NA											10	62					0	0	0.006214	0	0
ABHD2	11057	broad.mit.edu	37	15	89719165	89719165	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:89719165C>A	uc002bnj.2	+	11	1578	c.661C>A	c.(661-663)CAG>AAG	p.Q221K	ABHD2_uc002bnk.2_Missense_Mutation_p.Q221K	NM_007011	NP_008942	P08910	ABHD2_HUMAN	alpha/beta hydrolase domain containing protein	221						integral to membrane	carboxylesterase activity			ovary(1)|lung(1)	2	Lung NSC(78;0.0472)|all_lung(78;0.089)					GGGGGAGACTCAGGCAAACCA	0.552	Colon(11;252 417 24570 33239 41878)		NA											41	62					6.4771e-29	1.14811e-28	0.002522	1	0
PRC1	9055	broad.mit.edu	37	15	91523510	91523510	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:91523510C>T	uc002bqm.2	-	7	1089	c.932G>A	c.(931-933)AGC>AAC	p.S311N	PRC1_uc002bqn.2_Missense_Mutation_p.S311N|PRC1_uc002bqo.2_Missense_Mutation_p.S311N|PRC1_uc010uqs.1_Missense_Mutation_p.S270N	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	311	Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					CTGCTCCTGGCTATAAAAGCA	0.378			NA											40	49					0	0	0.00623	0	0
SV2B	9899	broad.mit.edu	37	15	91835670	91835670	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:91835670C>T	uc002bqv.2	+	12	2331	c.1940C>T	c.(1939-1941)TCT>TTT	p.S647F	SV2B_uc010uqv.1_Missense_Mutation_p.S496F|SV2B_uc002bqu.3_RNA	NM_014848	NP_055663	Q7L1I2	SV2B_HUMAN	synaptic vesicle protein 2B homolog	647	Helical; (Potential).				neurotransmitter transport	acrosomal vesicle|cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)|upper_aerodigestive_tract(1)	8	Lung NSC(78;0.0987)|all_lung(78;0.172)		BRCA - Breast invasive adenocarcinoma(143;0.0895)			ATCTTTGCTTCTTTTGTTGGG	0.488			NA											33	42					0	0	0.003271	0	0
WASH3P	374666	broad.mit.edu	37	15	102514170	102514170	+	Silent	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr15:102514170C>G	uc002cdi.2	+	7	1561	c.141C>G	c.(139-141)TCC>TCG	p.S47S	WASH3P_uc010utu.1_RNA|WASH3P_uc002cdl.2_Silent_p.S47S|WASH3P_uc002cdk.2_RNA|WASH3P_uc002cdp.2_Silent_p.S47S|WASH3P_uc010bpo.2_RNA|WASH3P_uc002cdq.2_RNA|WASH3P_uc002cdr.2_5'Flank	NR_003659				RecName: Full=WAS protein family homolog 2; AltName: Full=Protein FAM39B; AltName: Full=CXYorf1-like protein on chromosome 2;												0						ATGTTCCATCCTACCTGCCTG	0.582			NA											7	11					0	0	0.00308	0	0
LUC7L	55692	broad.mit.edu	37	16	239225	239225	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:239225G>A	uc002cgc.1	-	10	1199	c.1088C>T	c.(1087-1089)TCA>TTA	p.S363L	LUC7L_uc002cga.1_3'UTR|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_3'UTR|LUC7L_uc002cgb.1_Missense_Mutation_p.S277L	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	363							metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				CTTCTCTTCTGACCTCCGTGA	0.572			NA											9	171					0	0	0.008291	0	0
PKD1	5310	broad.mit.edu	37	16	2153733	2153733	+	Silent	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:2153733C>G	uc002cos.1	-	23	8534	c.8325G>C	c.(8323-8325)ACG>ACC	p.T2775T	PKD1_uc002cot.1_Silent_p.T2775T|PKD1_uc010bse.1_RNA	NM_001009944	NP_001009944	P98161	PKD1_HUMAN	polycystin 1 isoform 1 precursor	2775	Extracellular (Potential).|REJ.				calcium-independent cell-matrix adhesion|homophilic cell adhesion|neuropeptide signaling pathway	basolateral plasma membrane|integral to plasma membrane	protein domain specific binding|sugar binding			central_nervous_system(2)|skin(1)	3						CGCCCGCCAGCGTCAGGGGCT	0.687			NA											25	15					0	0	0.003954	0	0
SRL	6345	broad.mit.edu	37	16	4254601	4254601	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:4254601C>A	uc002cvz.3	-	2	109	c.96G>T	c.(94-96)TTG>TTT	p.L32F	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	491						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						AGCGGTCCCTCAATGGGGCTT	0.572			NA											15	72					0.000219431	0.000321267	0.00245	1	0
SALL1	6299	broad.mit.edu	37	16	51174808	51174808	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:51174808G>A	uc010vgs.1	-	2	1356	c.1325C>T	c.(1324-1326)TCC>TTC	p.S442F	SALL1_uc010vgr.1_Missense_Mutation_p.S345F|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	442					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TGCCTCATCGGAAGTACTTTT	0.498	GBM(103;1352 1446 1855 4775 8890)		NA											6	95					0	0	0.001168	0	0
RPGRIP1L	23322	broad.mit.edu	37	16	53726277	53726277	+	Splice_Site	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:53726277C>A	uc002ehp.2	-	4	295	c.231_splice	c.e4-1	p.R77_splice	RPGRIP1L_uc002eho.3_Splice_Site_p.R77_splice|RPGRIP1L_uc010vgy.1_Splice_Site_p.R77_splice|RPGRIP1L_uc010cbx.2_Splice_Site_p.R77_splice|RPGRIP1L_uc010vgz.1_Splice_Site_p.R77_splice|RPGRIP1L_uc002ehq.1_Splice_Site_p.R77_splice	NM_015272	NP_056087	Q68CZ1	FTM_HUMAN	RPGRIP1-like isoform a						negative regulation of G-protein coupled receptor protein signaling pathway	cell-cell junction|centrosome|cilium axoneme|microtubule basal body	thromboxane A2 receptor binding			ovary(1)	1		all_cancers(37;0.0973)				GGTGGCCATTCTGGGGAAATA	0.433			NA											15	92					4.7546e-09	7.49982e-09	0.004007	1	0
CDK10	8558	broad.mit.edu	37	16	89762019	89762019	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:89762019C>T	uc010cio.2	+	13	1045	c.1002C>T	c.(1000-1002)CTC>CTT	p.L334L	CDK10_uc002fod.2_Intron|CDK10_uc002foe.2_Silent_p.L263L|CDK10_uc002fof.2_Silent_p.L257L|CDK10_uc002fog.3_Intron|CDK10_uc002foh.3_Silent_p.L263L|CDK10_uc002foi.2_RNA	NM_052988	NP_443714	Q15131	CDK10_HUMAN	cyclin-dependent kinase 10 isoform a	334					negative regulation of cell proliferation|traversing start control point of mitotic cell cycle		ATP binding|cyclin-dependent protein kinase activity|protein binding			ovary(1)	1		Lung NSC(15;2.19e-05)|all_lung(18;3.07e-05)|all_hematologic(23;0.0256)		BRCA - Breast invasive adenocarcinoma(80;0.0276)		AGCCGGAGCTCATGCCGACCT	0.682			NA											3	8					0	0	0.004672	0	0
METT10D	79066	broad.mit.edu	37	17	2367611	2367611	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:2367611G>C	uc002fut.2	-	6	767	c.619C>G	c.(619-621)CCT>GCT	p.P207A	METT10D_uc002fuu.3_RNA|METT10D_uc010cka.2_RNA|METT10D_uc002fuv.2_Missense_Mutation_p.P207A|METT10D_uc010vqx.1_RNA|METT10D_uc010vqy.1_5'UTR	NM_024086	NP_076991	Q86W50	MET16_HUMAN	methyltransferase 10 domain containing	207							methyltransferase activity				0						ACAGAACTAGGCGGAGGTCTT	0.398			NA											16	24					0	0	0.004007	0	0
ZZEF1	23140	broad.mit.edu	37	17	3917482	3917482	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:3917482C>A	uc002fxe.2	-	51	8379	c.8315G>T	c.(8314-8316)GGA>GTA	p.G2772V	ZZEF1_uc002fxg.1_Missense_Mutation_p.G93V	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2772							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CAGAGTGTCTCCTAGGCACAC	0.547			NA											7	18					0.00307968	0.00442339	0.00308	1	0
SENP3	26168	broad.mit.edu	37	17	7468082	7468082	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:7468082C>T	uc002ghm.2	+	3	1129	c.856C>T	c.(856-858)CAG>TAG	p.Q286*	EIF4A1_uc002gho.1_5'Flank|SENP3_uc002ghn.1_Nonsense_Mutation_p.Q121*	NM_015670	NP_056485	Q9H4L4	SENP3_HUMAN	SUMO1/sentrin/SMT3 specific protease 3	286					proteolysis	MLL1 complex|nucleolus	cysteine-type peptidase activity			ovary(1)|central_nervous_system(1)	2		Prostate(122;0.157)				GGAGCTTTTTCAGGGCTCAGA	0.617			NA											7	38					0	0	0.00308	0	0
MYH4	4622	broad.mit.edu	37	17	10363311	10363311	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:10363311G>T	uc002gmn.2	-	14	1485	c.1374C>A	c.(1372-1374)TAC>TAA	p.Y458*	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	458	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CCCCGATGAAGTACTGCCTGG	0.498			NA											46	77					1.07234e-20	1.83336e-20	0.00361	1	0
MYH2	4620	broad.mit.edu	37	17	10426935	10426935	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:10426935G>A	uc010coi.2	-	37	5478	c.5350C>T	c.(5350-5352)CAC>TAC	p.H1784Y	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.H1784Y|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1784	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CGCTCCAGGTGGGCGCTGGTG	0.517			NA											6	91					0	0	0.001168	0	0
MYH2	4620	broad.mit.edu	37	17	10451137	10451137	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:10451137G>T	uc010coi.2	-	3	229	c.101C>A	c.(100-102)GCC>GAC	p.A34D	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.A34D|MYH2_uc010coj.2_Missense_Mutation_p.A34D	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	34	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						AGATGTTTTGGCATCAAAGGG	0.507			NA											6	63					0.00116845	0.00169201	0.001168	1	0
DNAH9	1770	broad.mit.edu	37	17	11837248	11837248	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:11837248C>A	uc002gne.2	+	65	12417	c.12349C>A	c.(12349-12351)CAT>AAT	p.H4117N	DNAH9_uc010coo.2_Missense_Mutation_p.H3335N|DNAH9_uc002gnf.2_Missense_Mutation_p.H429N	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4117					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GTATGGAGGCCATATCACAGA	0.488			NA											12	27					0.00010058	0.000147666	0.001368	1	0
COPS3	8533	broad.mit.edu	37	17	17171207	17171207	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:17171207G>C	uc002grd.2	-	5	524	c.433C>G	c.(433-435)CTC>GTC	p.L145V	COPS3_uc010vwv.1_Missense_Mutation_p.L125V|COPS3_uc010vww.1_Missense_Mutation_p.L15V	NM_003653	NP_003644	Q9UNS2	CSN3_HUMAN	COP9 constitutive photomorphogenic homolog	145					cullin deneddylation|response to light stimulus|signal transduction	cytoplasm|signalosome	protein binding			skin(1)	1						ACCTGGCAGAGATCAGCATGT	0.453			NA											29	34					0	0	0.008361	0	0
BRCA1	672	broad.mit.edu	37	17	41226380	41226380	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:41226380G>A	uc002icq.2	-	14	4875	c.4643C>T	c.(4642-4644)ACG>ATG	p.T1548M	BRCA1_uc010whp.1_Missense_Mutation_p.T397M|BRCA1_uc010whl.1_Missense_Mutation_p.T444M|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.T1477M|BRCA1_uc002icu.2_Missense_Mutation_p.T444M|BRCA1_uc010cyx.2_Missense_Mutation_p.T1501M|BRCA1_uc002ict.2_Missense_Mutation_p.T1569M|BRCA1_uc010whn.1_Missense_Mutation_p.T39M|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Missense_Mutation_p.T277M|BRCA1_uc002idc.1_Missense_Mutation_p.T444M|BRCA1_uc010whr.1_Missense_Mutation_p.T398M	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	1548					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		AGATGTTTCCGTCAAATCGTG	0.413			NA	D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			7	63					0	0	0.00308	0	0
RSAD1	55316	broad.mit.edu	37	17	48560834	48560834	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:48560834G>A	uc002iqw.1	+	6	1094	c.1038G>A	c.(1036-1038)CTG>CTA	p.L346L	RSAD1_uc010wmq.1_RNA	NM_018346	NP_060816	Q9HA92	RSAD1_HUMAN	radical S-adenosyl methionine domain containing	346					porphyrin biosynthetic process	mitochondrion	4 iron, 4 sulfur cluster binding|coproporphyrinogen oxidase activity|metal ion binding				0	Breast(11;1.93e-18)		BRCA - Breast invasive adenocarcinoma(22;1.55e-09)			GTGTCCCCCTGGGCAGGCTGG	0.577			NA											11	10					0	0	0.001368	0	0
HLF	3131	broad.mit.edu	37	17	53398181	53398181	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:53398181G>A	uc002iug.1	+	4	1354	c.829G>A	c.(829-831)GAG>AAG	p.E277K	HLF_uc010dce.1_Missense_Mutation_p.E192K|HLF_uc002iuh.2_Missense_Mutation_p.E192K|HLF_uc010wni.1_Missense_Mutation_p.E224K	NM_002126	NP_002117	Q16534	HLF_HUMAN	hepatic leukemia factor	277					multicellular organismal development|rhythmic process|transcription from RNA polymerase II promoter	nucleus	double-stranded DNA binding|protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						CTTGAGGAAGGAGCTGGGCAA	0.582			NA	T	TCF3	ALL								4	33					0	0	0.000248	0	0
LPO	4025	broad.mit.edu	37	17	56343594	56343594	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:56343594C>T	uc002ivt.2	+	11	1916	c.1600C>T	c.(1600-1602)CTG>TTG	p.L534L	LPO_uc010wns.1_Silent_p.L475L|LPO_uc010dcp.2_Silent_p.L451L|LPO_uc010dcq.2_Silent_p.L205L|LPO_uc010dcr.2_Silent_p.L97L	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	534					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GACTGGAGAGCTGCGCAACAA	0.542			NA											6	42					0	0	0.001168	0	0
GRIN2C	2905	broad.mit.edu	37	17	72846028	72846028	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:72846028G>A	uc002jlt.1	-	7	1692	c.1536C>T	c.(1534-1536)ATC>ATT	p.I512I	GRIN2C_uc010wrh.1_RNA|GRIN2C_uc002jlu.1_Silent_p.I512I	NM_000835	NP_000826	Q14957	NMDE3_HUMAN	N-methyl-D-aspartate receptor subunit 2C	512	Extracellular (Potential).				glutamate signaling pathway	cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|N-methyl-D-aspartate selective glutamate receptor activity			ovary(2)|breast(2)	4	all_lung(278;0.172)|Lung NSC(278;0.207)				Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)	GTTCCTCATTGATGGTGAGGG	0.617			NA											10	76					0	0	0.000978	0	0
ITGB4	3691	broad.mit.edu	37	17	73736482	73736482	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:73736482G>A	uc002jpg.2	+	21	2677	c.2490G>A	c.(2488-2490)GAG>GAA	p.E830E	ITGB4_uc002jph.2_Silent_p.E830E|ITGB4_uc010dgo.2_Silent_p.E830E|ITGB4_uc002jpi.3_Silent_p.E830E|ITGB4_uc010dgp.1_Silent_p.E830E|ITGB4_uc002jpj.2_Silent_p.E830E	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	830	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			TTTGCACCGAGAACCTGCTGA	0.647			NA											8	72					0	0	0.008291	0	0
ACTG1	71	broad.mit.edu	37	17	79479022	79479022	+	Missense_Mutation	SNP	G	G	C	rs11549209	by1000genomes	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:79479022G>C	uc002kaj.1	-	2	295	c.270C>G	c.(268-270)TTC>TTG	p.F90L	ACTG1_uc002kah.1_5'Flank|ACTG1_uc002kai.1_Missense_Mutation_p.F47L|ACTG1_uc002kak.1_Missense_Mutation_p.F90L|ACTG1_uc010wun.1_Missense_Mutation_p.F90L|ACTG1_uc002kal.1_Missense_Mutation_p.F90L|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	90					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			GCTCGTTGTAGAAGGTGTGGT	0.612			NA											20	73					0	0	0.001523	0	0
METRNL	284207	broad.mit.edu	37	17	81052032	81052032	+	Silent	SNP	C	C	T	rs142053233		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:81052032C>T	uc002kgh.2	+	4	773	c.648C>T	c.(646-648)CAC>CAT	p.H216H	METRNL_uc002kgi.2_Silent_p.H134H	NM_001004431	NP_001004431	Q641Q3	METRL_HUMAN	meteorin, glial cell differentiation	216						extracellular region					0	Breast(20;0.000443)|all_neural(118;0.0779)		BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			AAGTTACCCACGAGCCTGAGC	0.632			NA											36	72					0	0	0.002522	0	0
SLC39A6	25800	broad.mit.edu	37	18	33706278	33706278	+	Silent	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr18:33706278C>A	uc010dmy.2	-	2	983	c.693G>T	c.(691-693)CGG>CGT	p.R231R	SLC39A6_uc002kzj.2_Intron	NM_012319	NP_036451	Q13433	S39A6_HUMAN	solute carrier family 39 (zinc transporter),	231	Extracellular (Potential).					integral to membrane|lamellipodium membrane	zinc ion transmembrane transporter activity			ovary(1)|pancreas(1)	2						GCCGGCTCACCCGGCTCTTTG	0.468			NA											58	66					5.73376e-24	9.99635e-24	0.00361	1	0
FHOD3	80206	broad.mit.edu	37	18	34335227	34335227	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr18:34335227G>T	uc002kzt.1	+	21	3899	c.3802G>T	c.(3802-3804)GCC>TCC	p.A1268S	FHOD3_uc002kzs.1_Missense_Mutation_p.A1285S|FHOD3_uc010dmz.1_Missense_Mutation_p.A1000S|FHOD3_uc010dnb.1_Missense_Mutation_p.A264S	NM_025135	NP_079411	Q2V2M9	FHOD3_HUMAN	formin homology 2 domain containing 3	1268	FH2.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding			skin(3)|large_intestine(2)|breast(2)|ovary(1)	8		all_epithelial(2;0.0181)|Colorectal(2;0.0195)				ACAGAAACGGGCCAACCACAG	0.418			NA											6	5					5.9392e-07	9.01942e-07	0.001168	1	0
SETBP1	26040	broad.mit.edu	37	18	42532066	42532066	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr18:42532066C>T	uc010dni.2	+	4	3057	c.2761C>T	c.(2761-2763)CAT>TAT	p.H921Y		NM_015559	NP_056374	Q9Y6X0	SETBP_HUMAN	SET binding protein 1 isoform a	921						nucleus	DNA binding			upper_aerodigestive_tract(2)|large_intestine(1)	3				Colorectal(1;0.0622)|COAD - Colon adenocarcinoma(74;0.201)		CCGGCAAAAGCATCTCATTGT	0.532			NA							Schinzel-Giedion_syndrome				15	22					0	0	0.00245	0	0
STARD6	147323	broad.mit.edu	37	18	51863546	51863546	+	Silent	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr18:51863546A>G	uc010xdt.1	-	3	216	c.216T>C	c.(214-216)ATT>ATC	p.I72I		NM_139171	NP_631910	P59095	STAR6_HUMAN	START domain containing protein 6	72	START.				lipid transport		lipid binding			ovary(1)	1				Colorectal(16;0.021)|READ - Rectum adenocarcinoma(59;0.188)		TATCCCATGTAATTCTGTCTC	0.313			NA											20	25					0	0	0.007413	0	0
ALPK2	115701	broad.mit.edu	37	18	56247303	56247303	+	Silent	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr18:56247303C>A	uc002lhj.3	-	4	919	c.705G>T	c.(703-705)GTG>GTT	p.V235V		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	235							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						CCATGGAATGCACTGTCTTGT	0.388			NA											83	71					3.7744e-50	6.94594e-50	0.00361	1	0
C19orf6	91304	broad.mit.edu	37	19	1011931	1011931	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:1011931C>T	uc002lqr.1	-	6	1048	c.902G>A	c.(901-903)CGG>CAG	p.R301Q	uc002lqp.1_5'Flank|C19orf6_uc002lqq.1_RNA|C19orf6_uc002lqs.1_Missense_Mutation_p.R301Q	NM_001033026	NP_001028198	Q4ZIN3	MBRL_HUMAN	membralin isoform 1	301						cytoplasm|integral to membrane				pancreas(2)|breast(1)	3		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|GBM - Glioblastoma multiforme(1328;0.0252)|STAD - Stomach adenocarcinoma(1328;0.18)		GTAGGACGTCCGCGCCATCCA	0.701			NA											4	18					0	0	0.000248	0	0
INSR	3643	broad.mit.edu	37	19	7152778	7152778	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:7152778C>T	uc002mgd.1	-	10	2299	c.2190G>A	c.(2188-2190)AAG>AAA	p.K730K	INSR_uc002mge.1_Silent_p.K730K|INSR_uc002mgf.2_Silent_p.K730K	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	730					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCTCAAACGTCTTCCTAAACG	0.542			NA											21	80					0	0	0.001882	0	0
KEAP1	9817	broad.mit.edu	37	19	10599866	10599866	+	Splice_Site	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:10599866A>T	uc002moq.1	-	5	1864	c.1708_splice	c.e5+1	p.G570_splice	KEAP1_uc002mop.1_Intron|KEAP1_uc002mor.1_Splice_Site_p.G570_splice	NM_012289	NP_036421	Q14145	KEAP1_HUMAN	kelch-like ECH-associated protein 1						regulation of transcription, DNA-dependent|transcription, DNA-dependent	centrosome|midbody|nucleus	protein binding			lung(12)|breast(3)|ovary(1)|pancreas(1)	17			OV - Ovarian serous cystadenocarcinoma(20;2.71e-09)|Epithelial(33;2.32e-06)|all cancers(31;1.42e-05)			CCAGGGCCTCACCAAGGACGT	0.483			NA											14	4					0	0	0.003163	0	0
DNM2	1785	broad.mit.edu	37	19	10906047	10906047	+	Splice_Site	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:10906047G>C	uc002mps.1	+	9	1293	c.1129_splice	c.e9-1	p.M377_splice	DNM2_uc010dxk.2_Splice_Site|DNM2_uc002mpt.1_Splice_Site_p.M377_splice|DNM2_uc002mpv.1_Splice_Site_p.M377_splice|DNM2_uc002mpu.1_Splice_Site_p.M377_splice|DNM2_uc010dxl.1_Splice_Site_p.M377_splice|DNM2_uc002mpw.2_Splice_Site_p.M110_splice	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2						G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			TCTCTTCTCAGATGGAGTTTG	0.552			NA											15	23					0	0	0.003163	0	0
OR7C1	26664	broad.mit.edu	37	19	14910938	14910938	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:14910938C>T	uc010xnz.1	-	1	11	c.11G>A	c.(10-12)GGA>GAA	p.G4E		NM_198944	NP_945182	O76099	OR7C1_HUMAN	olfactory receptor, family 7, subfamily C,	4	Extracellular (Potential).				sensory perception of smell|spermatogenesis	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						TGTTTGATTTCCTGTTTCCAT	0.393			NA											55	13					0	0	0.00361	0	0
FCHO1	23149	broad.mit.edu	37	19	17885230	17885230	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:17885230C>A	uc010ebb.2	+	12	1052	c.863C>A	c.(862-864)GCC>GAC	p.A288D	FCHO1_uc002nhg.3_Missense_Mutation_p.A288D|FCHO1_uc002nhh.2_Missense_Mutation_p.A288D|FCHO1_uc010xpw.1_Missense_Mutation_p.A238D|FCHO1_uc010ebc.1_Missense_Mutation_p.A295D	NM_001161358	NP_001154830	O14526	FCHO1_HUMAN	FCH domain only 1 isoform b	288										breast(1)	1						GGAGCCAAGGCCTTTCGCCTT	0.632			NA											27	36					3.00307e-07	4.60007e-07	0.008361	1	0
Unknown	0	broad.mit.edu	37	19	23405372	23405372	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:23405372C>G	uc010xri.1	-	4	1793	c.1675G>C	c.(1675-1677)GAG>CAG	p.E559Q						SubName: Full=cDNA FLJ56866, moderately similar to Zinc finger protein 43;												NA						TAGGGTTTCTCTCCAGTATGA	0.368			NA											15	22					0	0	0.00245	0	0
ZNF91	7644	broad.mit.edu	37	19	23543433	23543433	+	Nonsense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:23543433G>C	uc002nre.2	-	4	2461	c.2348C>G	c.(2347-2349)TCA>TGA	p.S783*	ZNF91_uc002nrd.2_5'Flank|ZNF91_uc010xrj.1_Nonsense_Mutation_p.S751*	NM_003430	NP_003421	Q05481	ZNF91_HUMAN	zinc finger protein 91	783	C2H2-type 23.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		all_lung(12;0.0349)|Lung NSC(12;0.0538)|all_epithelial(12;0.0611)				AGTTAGGGTTGAAGACCATAT	0.388			NA											5	61					0	0	0.000602	0	0
ZNF536	9745	broad.mit.edu	37	19	30936464	30936464	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:30936464C>A	uc002nsu.1	+	2	2133	c.1995C>A	c.(1993-1995)CAC>CAA	p.H665Q	ZNF536_uc010edd.1_Missense_Mutation_p.H665Q	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	665					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ATGGGCTGCACGTGGGCCTGG	0.692			NA											38	25					2.2871e-25	4.01378e-25	0.007835	1	0
ANKRD27	84079	broad.mit.edu	37	19	33130317	33130317	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:33130317G>A	uc002ntn.1	-	12	1217	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L	ANKRD27_uc002nto.1_Missense_Mutation_p.S354L	NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	354	VPS9.				early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					AGCTTCGAATGAGGTCAGGCA	0.458			NA											9	69					0	0	0.004482	0	0
NFKBID	84807	broad.mit.edu	37	19	36381384	36381384	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:36381384C>A	uc002oci.1	-	10	1189	c.615G>T	c.(613-615)AAG>AAT	p.K205N	NFKBID_uc002och.1_Missense_Mutation_p.K42N|NFKBID_uc002ocj.1_Missense_Mutation_p.K220N	NM_139239	NP_640332	Q8NI38	IKBD_HUMAN	nuclear factor of kappa light polypeptide gene	205					inflammatory response	nucleus					0						TCTTGTTGCTCTTGATCTCCT	0.592			NA											47	49					2.46787e-29	4.38917e-29	0.00361	1	0
ZNF568	374900	broad.mit.edu	37	19	37441787	37441787	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:37441787A>G	uc002ofc.2	+	7	2247	c.1732A>G	c.(1732-1734)AGA>GGA	p.R578G	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Missense_Mutation_p.R502G|ZNF568_uc010efe.2_Missense_Mutation_p.R502G|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	578	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCTTCATGTGAGAAGTCACAC	0.378			NA											8	73					0	0	0.00308	0	0
HNRNPL	3191	broad.mit.edu	37	19	39330868	39330868	+	Silent	SNP	T	T	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:39330868T>G	uc010xul.1	-	8	1112	c.1101A>C	c.(1099-1101)CCA>CCC	p.P367P	HNRNPL_uc010ege.1_Silent_p.P23P|HNRNPL_uc002ojj.1_Silent_p.P23P|HNRNPL_uc002ojo.1_5'Flank|HNRNPL_uc002ojk.2_Silent_p.P23P|HNRNPL_uc002ojl.2_Silent_p.P23P|HNRNPL_uc010xum.1_Silent_p.P234P|HNRNPL_uc002ojp.1_Silent_p.P23P|HNRNPL_uc010xun.1_Missense_Mutation_p.H75P	NM_001533	NP_001524	P14866	HNRPL_HUMAN	heterogeneous nuclear ribonucleoprotein L	367	Pro-rich.				nuclear mRNA splicing, via spliceosome	cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding|transcription regulatory region DNA binding				0	all_cancers(60;6.83e-06)|Ovarian(47;0.0454)		Lung(45;0.00342)|LUSC - Lung squamous cell carcinoma(53;0.00575)			GGGGAGGGGGTGGGGGGTGCC	0.642			NA											3	11					0	0	0.001984	0	0
FCGBP	8857	broad.mit.edu	37	19	40433630	40433630	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:40433630C>A	uc002omp.3	-	2	647	c.639G>T	c.(637-639)AAG>AAT	p.K213N		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	213	IgGFc-binding.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TAGCTGTGACCTTTGACCCCG	0.557			NA											35	47					1.42033e-22	2.43617e-22	0.004289	1	0
SPTBN4	57731	broad.mit.edu	37	19	41081435	41081435	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:41081435G>A	uc002ony.2	+	36	7741	c.7655G>A	c.(7654-7656)AGG>AAG	p.R2552K	SPTBN4_uc002onz.2_Missense_Mutation_p.R2552K|SPTBN4_uc010egx.2_Missense_Mutation_p.R1295K|SHKBP1_uc002oob.2_5'Flank|SHKBP1_uc002ooc.2_5'Flank|SHKBP1_uc002ood.2_5'Flank|SHKBP1_uc010xvl.1_5'Flank|SHKBP1_uc002ooe.2_5'Flank|SHKBP1_uc002oof.2_5'Flank|SHKBP1_uc010xvm.1_5'Flank	NM_020971	NP_066022	Q9H254	SPTN4_HUMAN	spectrin, beta, non-erythrocytic 4 isoform	2552					actin filament capping|axon guidance|cytoskeletal anchoring at plasma membrane|vesicle-mediated transport	cytosol|nuclear matrix|PML body|spectrin	actin binding|ankyrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(1)|skin(1)	5			Lung(22;0.000114)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AACCCTAAGAGGGAAGGCGGA	0.622			NA											6	13					0	0	0.001984	0	0
ZNF225	7768	broad.mit.edu	37	19	44635321	44635321	+	Missense_Mutation	SNP	T	T	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:44635321T>G	uc002oyj.1	+	5	797	c.554T>G	c.(553-555)TTC>TGC	p.F185C	ZNF225_uc010eje.1_Missense_Mutation_p.F102C|ZNF225_uc010ejf.1_Missense_Mutation_p.F185C	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	185	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				GGAAAGAGTTTCTGTTATAGC	0.398			NA											30	39					0	0	0.00632	0	0
SCAF1	58506	broad.mit.edu	37	19	50156067	50156067	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:50156067C>T	uc002poq.2	+	7	2545	c.2421C>T	c.(2419-2421)CCC>CCT	p.P807P		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	807	Ser-rich.				mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		CCTCAGGGCCCCCGCCAAAGC	0.522			NA											16	5					0	0	0.007413	0	0
NLRP12	91662	broad.mit.edu	37	19	54314303	54314303	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:54314303C>T	uc002qch.3	-	3	830	c.610G>A	c.(610-612)GAG>AAG	p.E204K	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.E204K|NLRP12_uc002qcj.3_Missense_Mutation_p.E204K|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.E204K	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	204					negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GGGCGCTCCTCGTCTGGCTCA	0.657			NA											5	76					0	0	0.001168	0	0
LILRB1	10859	broad.mit.edu	37	19	55143594	55143594	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:55143594G>A	uc002qgj.2	+	6	907	c.567G>A	c.(565-567)CCG>CCA	p.P189P	LILRB1_uc010erp.1_Intron|LILRB1_uc002qgl.2_Silent_p.P189P|LILRB1_uc002qgk.2_Silent_p.P189P|LILRB1_uc002qgm.2_Silent_p.P189P|LILRB1_uc010erq.2_Silent_p.P189P|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	189	Ig-like C2-type 2.|Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		CCGTGAGCCCGAGTCGCAGGT	0.587			NA								HNSCC(37;0.09)			69	13					0	0	0.00361	0	0
ZBTB45	84878	broad.mit.edu	37	19	59028515	59028515	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:59028515G>T	uc002qtd.2	-	2	818	c.526C>A	c.(526-528)CCC>ACC	p.P176T	ZBTB45_uc002qte.2_Missense_Mutation_p.P176T|ZBTB45_uc002qtf.2_Missense_Mutation_p.P176T	NM_032792	NP_116181	Q96K62	ZBT45_HUMAN	zinc finger and BTB domain containing 45	176	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(17;1.81e-17)|all_epithelial(17;1.21e-12)|Lung NSC(17;2.8e-05)|all_lung(17;0.000139)|Colorectal(82;0.000147)|Renal(17;0.00528)|all_neural(62;0.0133)|Ovarian(87;0.156)|Medulloblastoma(540;0.232)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0165)|Lung(386;0.18)		AAACGCGCGGGCTGGCGCTGC	0.716	NSCLC(164;1383 2017 5233 27540 46677)		NA									OREG0025700	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	17					7.41877e-09	1.15987e-08	0.001882	1	0
ASXL2	55252	broad.mit.edu	37	2	25965964	25965964	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:25965964G>A	uc002rgs.2	-	12	3463	c.3242C>T	c.(3241-3243)TCA>TTA	p.S1081L	ASXL2_uc002rgt.1_Intron	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	1081					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CGGCACAACTGAGAGAAGATT	0.502			NA											12	76					0	0	0.000978	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69053219	69053219	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:69053219C>A	uc002seu.2	+	11	2195	c.1831C>A	c.(1831-1833)CGC>AGC	p.R611S	ARHGAP25_uc010fdg.2_Missense_Mutation_p.R612S|ARHGAP25_uc010yql.1_Missense_Mutation_p.R572S|ARHGAP25_uc002sew.2_Missense_Mutation_p.R604S|ARHGAP25_uc002sex.2_Missense_Mutation_p.R605S|ARHGAP25_uc002sey.2_Missense_Mutation_p.R338S	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	611	Potential.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						GATCAGCCTCCGCAACATGGA	0.483			NA											31	61					3.1745e-13	5.17687e-13	0.008361	1	0
LRRTM4	80059	broad.mit.edu	37	2	77746052	77746052	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:77746052A>T	uc002snr.2	-	3	1358	c.943T>A	c.(943-945)TGC>AGC	p.C315S	LRRTM4_uc002snq.2_Missense_Mutation_p.C315S|LRRTM4_uc002sns.2_Missense_Mutation_p.C315S|LRRTM4_uc002snt.2_Missense_Mutation_p.C316S	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	315	LRRCT.|Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		CTCCGACTGCATTCCCACATA	0.393			NA											6	6					0	0	0.001984	0	0
REG3A	5068	broad.mit.edu	37	2	79384745	79384745	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:79384745G>T	uc002sod.1	-	4	668	c.413C>A	c.(412-414)TCC>TAC	p.S138Y	REG3A_uc002soe.1_Missense_Mutation_p.S138Y|REG3A_uc002sof.1_Missense_Mutation_p.S138Y	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	138	C-type lectin.				acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						TGAGATGGTGGAGGGATTTCT	0.537			NA											46	37					5.20006e-24	9.09582e-24	0.002852	1	0
ANKRD20B	729171	broad.mit.edu	37	2	95513900	95513900	+	Splice_Site	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:95513900C>T	uc010fhp.2	-	5		c.506_splice	c.e5-1			NR_003366				Homo sapiens ankyrin repeat domain 20B (ANKRD20B), non-coding RNA.												0						GAGAGCTGACCTAAAATAACA	0.353			NA											28	529					0	0	0.00623	0	0
ANKRD36	375248	broad.mit.edu	37	2	97866080	97866080	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:97866080G>C	uc010yva.1	+	45	3009	c.2765G>C	c.(2764-2766)CGG>CCG	p.R922P	ANKRD36_uc002sxo.2_Missense_Mutation_p.R338P|ANKRD36_uc002sxp.3_RNA|ANKRD36_uc002sxq.1_RNA	NM_001164315	NP_001157787	A6QL64	AN36A_HUMAN	ankyrin repeat domain 36	922											0						GTGTCTTCTCGGAAAAAACCA	0.338			NA											17	39					0	0	0.007413	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459563	107459563	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:107459563G>T	uc002tdq.2	-	2	990	c.871C>A	c.(871-873)CGC>AGC	p.R291S	ST6GAL2_uc002tdr.2_Missense_Mutation_p.R291S|ST6GAL2_uc002tds.3_Missense_Mutation_p.R291S	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	291	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity	p.R291C(1)|p.R291H(1)		pancreas(6)|ovary(4)|skin(1)	11						CGCAGGCCGCGGGGGTGCAGC	0.716			NA											12	11					3.07112e-06	4.598e-06	0.000978	1	0
SULT1C4	27233	broad.mit.edu	37	2	108999952	108999952	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:108999952G>A	uc002tea.1	+	5	974	c.601G>A	c.(601-603)GAG>AAG	p.E201K	SULT1C4_uc010ywr.1_RNA|SULT1C4_uc002teb.1_Missense_Mutation_p.E126K	NM_006588	NP_006579	O75897	ST1C4_HUMAN	sulfotransferase family, cytosolic, 1C, member	201	PAPS.				3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol	sulfotransferase activity				0						TCTCTTCTATGAGGACATGAA	0.468			NA											29	24					0	0	0.008361	0	0
EDAR	10913	broad.mit.edu	37	2	109513632	109513632	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:109513632G>T	uc002teq.3	-	12	1509	c.1078C>A	c.(1078-1080)CTC>ATC	p.L360I	EDAR_uc010fjn.2_Missense_Mutation_p.L392I|EDAR_uc010yws.1_Missense_Mutation_p.L392I	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	360	Death.|Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GTGGAGCTGAGCATTCGGCTA	0.537			NA											11	24					1.58986e-06	2.38705e-06	0.008291	1	0
NCKAP5	344148	broad.mit.edu	37	2	133489398	133489398	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:133489398G>T	uc002ttp.2	-	17	5729	c.5355C>A	c.(5353-5355)AGC>AGA	p.S1785R	NCKAP5_uc002ttq.2_Missense_Mutation_p.S466R	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1785							protein binding				0						GAACAATGGCGCTATCTGCAG	0.567			NA											56	49					8.44121e-28	1.49128e-27	0.00361	1	0
GALNT5	11227	broad.mit.edu	37	2	158114729	158114729	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:158114729C>T	uc002tzg.2	+	1	390	c.135C>T	c.(133-135)ATC>ATT	p.I45I	GALNT5_uc010zci.1_RNA	NM_014568	NP_055383	Q7Z7M9	GALT5_HUMAN	N-acetylgalactosaminyltransferase 5	45	Lumenal (Potential).				glycosaminoglycan biosynthetic process	Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(3)|skin(1)	4						CTCGGGTCATCAAGGAAGACA	0.468			NA											18	102					0	0	0.007413	0	0
ITGB6	3694	broad.mit.edu	37	2	161052915	161052915	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:161052915G>C	uc002ubh.2	-	3	174	c.158C>G	c.(157-159)TCT>TGT	p.S53C	ITGB6_uc010fow.1_RNA|ITGB6_uc010fou.2_Missense_Mutation_p.S53C|ITGB6_uc010zcq.1_Missense_Mutation_p.S11C|ITGB6_uc010fov.1_Missense_Mutation_p.S53C	NM_000888	NP_000879	P18564	ITB6_HUMAN	integrin, beta 6 precursor	53	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|multicellular organismal development	integrin complex	receptor activity			ovary(1)|lung(1)|skin(1)	3						GCCAACTCCAGATGGATGAGT	0.318			NA											9	106					0	0	0.004482	0	0
COL3A1	1281	broad.mit.edu	37	2	189860870	189860870	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:189860870G>A	uc002uqj.1	+	23	1745	c.1628G>A	c.(1627-1629)GGA>GAA	p.G543E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	543	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	GGAAGTCCAGGAGGACCAGGA	0.363			NA											4	58					0	0	0.000602	0	0
COL6A3	1293	broad.mit.edu	37	2	238285718	238285718	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:238285718C>T	uc002vwl.2	-	7	3052	c.2767G>A	c.(2767-2769)GCA>ACA	p.A923T	COL6A3_uc002vwo.2_Missense_Mutation_p.A717T|COL6A3_uc010znj.1_Missense_Mutation_p.A316T|COL6A3_uc002vwq.2_Missense_Mutation_p.A717T|COL6A3_uc002vwr.2_Missense_Mutation_p.A516T|COL6A3_uc010znk.1_Missense_Mutation_p.A723T	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	923	Nonhelical region.|VWFA 5.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		TACCTCTGTGCATAGTCCAGC	0.522			NA											14	43					0	0	0.004007	0	0
COL6A3	1293	broad.mit.edu	37	2	238287566	238287566	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:238287566C>G	uc002vwl.2	-	6	2495	c.2210G>C	c.(2209-2211)AGC>ACC	p.S737T	COL6A3_uc002vwo.2_Missense_Mutation_p.S531T|COL6A3_uc010znj.1_Intron|COL6A3_uc002vwq.2_Missense_Mutation_p.S531T|COL6A3_uc002vwr.2_Missense_Mutation_p.S330T|COL6A3_uc010znk.1_Intron	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	737	VWFA 4.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACGGATCCTGCTGCCGCCAGC	0.612			NA											3	36					0	0	0.000248	0	0
GPR35	2859	broad.mit.edu	37	2	241569660	241569660	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:241569660G>A	uc002vzs.1	+	1	866	c.291G>A	c.(289-291)CTG>CTA	p.L97L	GPR35_uc010fzh.1_Silent_p.L128L|GPR35_uc010fzi.1_Silent_p.L128L	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	97	Helical; Name=3; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		GCATCTACCTGACCAACAGGT	0.677			NA											5	37					0	0	0.000602	0	0
CPXM1	56265	broad.mit.edu	37	20	2776781	2776781	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:2776781C>A	uc002wgu.2	-	10	1333	c.1269G>T	c.(1267-1269)GAG>GAT	p.E423D	CPXM1_uc010gas.2_Missense_Mutation_p.E423D	NM_019609	NP_062555	Q96SM3	CPXM1_HUMAN	carboxypeptidase X, member 1 precursor	423					cell adhesion|proteolysis		metallocarboxypeptidase activity|zinc ion binding			ovary(2)|skin(2)	4						TCCAGCGGCCCTCGGCCCAGC	0.592			NA											23	30					6.36457e-07	9.63778e-07	0.003954	1	0
CSRP2BP	57325	broad.mit.edu	37	20	18163777	18163777	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:18163777G>A	uc002wqj.2	+	9	2441	c.1819G>A	c.(1819-1821)GAA>AAA	p.E607K	CSRP2BP_uc002wqk.2_Missense_Mutation_p.E479K|CSRP2BP_uc010zru.1_Missense_Mutation_p.E478K	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	607					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						GCGTGATTATGAAACAAAGCC	0.468			NA											12	101					0	0	0.000978	0	0
TPX2	22974	broad.mit.edu	37	20	30359385	30359385	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:30359385G>C	uc002wwp.1	+	7	1206	c.508G>C	c.(508-510)GAG>CAG	p.E170Q	TPX2_uc010gdv.1_Missense_Mutation_p.E170Q	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	170					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			AAAGAAGCCAGAGGAAGAAGG	0.433			NA											4	41					0	0	0.000248	0	0
MYLK2	85366	broad.mit.edu	37	20	30418882	30418882	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:30418882G>A	uc002wwq.2	+	10	1464	c.1362G>A	c.(1360-1362)GTG>GTA	p.V454V	MYLK2_uc002wws.2_Silent_p.V71V|MYLK2_uc010gdw.1_RNA	NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	454	Protein kinase.				cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CTGAGGTGGTGAATTATGACC	0.542			NA											27	86					0	0	0.003954	0	0
KIAA1755	85449	broad.mit.edu	37	20	36841846	36841846	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:36841846G>T	uc002xhy.1	-	14	3473	c.3201C>A	c.(3199-3201)CGC>CGA	p.R1067R	KIAA1755_uc002xhv.1_Silent_p.R131R|KIAA1755_uc002xhw.1_Silent_p.R122R|KIAA1755_uc002xhx.1_Silent_p.R345R	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	1067										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				TTCGTTCTGGGCGCGCTGAGT	0.632			NA											6	8					0.00116845	0.00169201	0.001168	1	0
WISP2	8839	broad.mit.edu	37	20	43353466	43353466	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:43353466G>A	uc002xmn.2	+	4	718	c.365G>A	c.(364-366)CGC>CAC	p.R122H	uc002xml.1_Intron|uc002xmm.1_Intron|WISP2_uc002xmp.2_Missense_Mutation_p.R122H|WISP2_uc002xmq.2_Intron	NM_003881	NP_003872	O76076	WISP2_HUMAN	WNT1 inducible signaling pathway protein 2	122	VWFC.				cell adhesion|cell-cell signaling|signal transduction	extracellular region|soluble fraction	insulin-like growth factor binding			skin(1)	1		Myeloproliferative disorder(115;0.0122)				ATCCGCTGCCGCTGCGAGGAC	0.687			NA											8	5					0	0	0.004482	0	0
WFDC10B	280664	broad.mit.edu	37	20	44313526	44313526	+	Silent	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:44313526T>C	uc002xpb.2	-	4	396	c.165A>G	c.(163-165)GAA>GAG	p.E55E	WFDC10B_uc002xpc.2_Silent_p.E71E	NM_172006	NP_742003	Q8IUB3	WF10B_HUMAN	WAP four-disulfide core domain 10B isoform a	55	WAP.					extracellular region	peptidase inhibitor activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TCTTATTTGTTTCACACTTTT	0.468			NA											12	140					0	0	0.003163	0	0
PTGIS	5740	broad.mit.edu	37	20	48124472	48124472	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:48124472G>T	uc002xut.2	-	10	1542	c.1488C>A	c.(1486-1488)TAC>TAA	p.Y496*	PTGIS_uc010zyi.1_Nonsense_Mutation_p.Y357*	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	496					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GGCGGATGCGGTAGCGGACGG	0.512			NA											26	22					1.32181e-22	2.28195e-22	0.007291	1	0
DIDO1	11083	broad.mit.edu	37	20	61512557	61512557	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:61512557C>T	uc002ydr.1	-	16	5015	c.4751G>A	c.(4750-4752)CGT>CAT	p.R1584H	DIDO1_uc002yds.1_Missense_Mutation_p.R1584H	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1584					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTGGGCACCACGTGCCGAGAG	0.706	Melanoma(25;381 482 3385 5362 7955 17159 17174 40604 47095)		NA											5	29					0	0	0.000602	0	0
CHODL	140578	broad.mit.edu	37	21	19632525	19632525	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr21:19632525C>T	uc002ykv.2	+	4	947	c.556C>T	c.(556-558)CCA>TCA	p.P186S	CHODL_uc002ykr.2_Missense_Mutation_p.P145S|CHODL_uc002yks.2_Missense_Mutation_p.P145S|CHODL_uc002ykt.2_Missense_Mutation_p.P145S|CHODL_uc002yku.2_Missense_Mutation_p.P145S	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	186	Extracellular (Potential).				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		AGAGATTAATCCAACAGCCCC	0.284			NA											22	32					0	0	0.00278	0	0
HUNK	30811	broad.mit.edu	37	21	33346965	33346965	+	Missense_Mutation	SNP	G	G	C	rs62221640		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr21:33346965G>C	uc002yph.2	+	7	1469	c.1109G>C	c.(1108-1110)CGC>CCC	p.R370P		NM_014586	NP_055401	P57058	HUNK_HUMAN	hormonally upregulated Neu-associated kinase	370					multicellular organismal development|signal transduction		ATP binding|protein serine/threonine kinase activity			stomach(1)|skin(1)	2						CTCTCCAACCGCGCCTGCCAC	0.542			NA											46	14					0	0	0.00361	0	0
DSCR6	53820	broad.mit.edu	37	21	38385891	38385891	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr21:38385891G>A	uc002yvv.2	+	3	422	c.212G>A	c.(211-213)GGA>GAA	p.G71E	DSCR6_uc011aec.1_5'UTR|DSCR6_uc010gnd.2_Intron	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	71						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				GGATCAAAGGGAGCCTTTGGG	0.413	Colon(134;194 1731 2725 51652 51982)		NA											16	4					0	0	0.006122	0	0
KRTAP10-6	386674	broad.mit.edu	37	21	46011946	46011946	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr21:46011946G>A	uc002zfm.2	-	1	441	c.420C>T	c.(418-420)AGC>AGT	p.S140S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198688	NP_941961	P60371	KR106_HUMAN	keratin associated protein 10-6	140	29 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTGACTGGCAGCTAGACTGCT	0.622			NA											76	18					0	0	0.00361	0	0
OR11H1	81061	broad.mit.edu	37	22	16449094	16449094	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr22:16449094C>T	uc011agd.1	-	1	711	c.711G>A	c.(709-711)CTG>CTA	p.L237L		NM_001005239	NP_001005239	Q8NG94	O11H1_HUMAN	olfactory receptor, family 11, subfamily H,	237	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.208)		Kidney(3;0.00216)|KIRC - Kidney renal clear cell carcinoma(3;0.00244)|Lung(27;0.0724)|COAD - Colon adenocarcinoma(3;0.211)		ACATAGCTTTCAGGACAAGAG	0.423			NA											6	165					0	0	0.001984	0	0
OSM	5008	broad.mit.edu	37	22	30660183	30660183	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr22:30660183T>A	uc003ahb.2	-	3	500	c.448A>T	c.(448-450)ATC>TTC	p.I150F		NM_020530	NP_065391	P13725	ONCM_HUMAN	oncostatin M precursor	150					cell proliferation|immune response|negative regulation of cell proliferation|negative regulation of hormone secretion|positive regulation of cell division|positive regulation of cell proliferation|positive regulation of MAPKKK cascade|positive regulation of peptidyl-serine phosphorylation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of growth	extracellular space|oncostatin-M receptor complex	cytokine activity|growth factor activity|oncostatin-M receptor binding			skin(1)	1			Epithelial(10;0.206)			ATGCAGTAGATGTTGTTCCTG	0.647			NA											16	1					0	0	0.004007	0	0
FBXO7	25793	broad.mit.edu	37	22	32889176	32889176	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr22:32889176C>G	uc003amq.2	+	7	1335	c.1052C>G	c.(1051-1053)TCC>TGC	p.S351C	FBXO7_uc003amr.2_Missense_Mutation_p.S237C|FBXO7_uc003ams.2_Missense_Mutation_p.S195C|FBXO7_uc003amt.2_Missense_Mutation_p.S272C|FBXO7_uc003amu.2_Missense_Mutation_p.S237C|FBXO7_uc003amv.2_Missense_Mutation_p.S50C	NM_012179	NP_036311	Q9Y3I1	FBX7_HUMAN	F-box only protein 7 isoform 1	351	F-box.				cell death|regulation of protein stability|ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(1)	1						GATGTTCGTTCCGTCTTGTCT	0.448			NA											5	79					0	0	0.000602	0	0
SYNGR1	9145	broad.mit.edu	37	22	39770473	39770473	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr22:39770473G>T	uc003axq.3	+	2	314	c.252G>T	c.(250-252)CTG>CTT	p.L84L	SYNGR1_uc003axo.3_Silent_p.L84L|SYNGR1_uc003axp.3_Missense_Mutation_p.C15F|TAB1_uc003axr.2_5'UTR|SYNGR1_uc003axs.3_Silent_p.L85L	NM_004711	NP_004702	O43759	SNG1_HUMAN	synaptogyrin 1 isoform 1a	84	Helical; (Potential).|MARVEL.				regulation of long-term neuronal synaptic plasticity|regulation of short-term neuronal synaptic plasticity	cell junction|integral to plasma membrane|melanosome					0	Melanoma(58;0.04)					CCTGCCTGCTGTACCTGGCCC	0.652			NA											59	9					2.02796e-37	3.61892e-37	0.00361	1	0
GRAP2	9402	broad.mit.edu	37	22	40356136	40356136	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr22:40356136G>T	uc003ayh.1	+	4	511	c.248G>T	c.(247-249)CGG>CTG	p.R83L	GRAP2_uc003ayi.2_RNA|GRAP2_uc011aom.1_Missense_Mutation_p.R57L|GRAP2_uc011aon.1_Intron|GRAP2_uc010gya.1_Missense_Mutation_p.R83L|GRAP2_uc011aoo.1_Missense_Mutation_p.R11L|GRAP2_uc011aop.1_Intron|GRAP2_uc011aoq.1_Silent_p.P26P|GRAP2_uc003ayj.1_Missense_Mutation_p.R83L	NM_004810	NP_004801	O75791	GRAP2_HUMAN	GRB2-related adaptor protein 2	83	SH2.				cell-cell signaling|Ras protein signal transduction|T cell costimulation|T cell receptor signaling pathway	cytosol	SH3/SH2 adaptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TTCATCATCCGGGCCAGCCAG	0.552			NA											113	19					3.68091e-61	6.8452e-61	0.00361	1	0
MEI1	150365	broad.mit.edu	37	22	42139103	42139103	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr22:42139103C>G	uc003baz.1	+	12	1376	c.1351C>G	c.(1351-1353)CCA>GCA	p.P451A	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Missense_Mutation_p.P451A|MEI1_uc011apd.1_Intron	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	451							binding			central_nervous_system(1)|skin(1)	2						TCAGAGCACTCCACCTGTGCA	0.527			NA											6	9					0	0	0.00308	0	0
TRANK1	9881	broad.mit.edu	37	3	36874921	36874921	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:36874921G>C	uc003cgj.2	-	12	4673	c.4371C>G	c.(4369-4371)TTC>TTG	p.F1457L		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2007					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGTCAAACTTGAAGAAGGCAT	0.547			NA											3	29					0	0	0.004672	0	0
NBEAL2	23218	broad.mit.edu	37	3	47039673	47039673	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:47039673C>T	uc003cqp.2	+	21	3254	c.3075C>T	c.(3073-3075)TTC>TTT	p.F1025F	NBEAL2_uc010hjm.1_Silent_p.F586F	NM_015175	NP_055990	Q6ZNJ1	NBEL2_HUMAN	neurobeachin-like 2	1025							binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.0534)		BRCA - Breast invasive adenocarcinoma(193;0.0012)|KIRC - Kidney renal clear cell carcinoma(197;0.00575)|Kidney(197;0.00656)		ATTTGCTCTTCAACTTTCACC	0.607			NA											5	17					0	0	0.001168	0	0
PRKAR2A	5576	broad.mit.edu	37	3	48884962	48884962	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:48884962C>T	uc010hki.1	-	1	309	c.68G>A	c.(67-69)CGA>CAA	p.R23Q	PRKAR2A_uc003cux.1_Missense_Mutation_p.R23Q|PRKAR2A_uc003cuy.1_Missense_Mutation_p.R23Q|uc003cuz.1_5'Flank	NM_004157	NP_004148	P13861	KAP2_HUMAN	cAMP-dependent protein kinase, regulatory	23	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|membrane fraction	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000176)|Kidney(197;0.00246)|KIRC - Kidney renal clear cell carcinoma(197;0.00261)		CGGCTGCTGTCGCAGCACCTC	0.711			NA											3	9					0	0	0.000248	0	0
ITIH1	3697	broad.mit.edu	37	3	52825615	52825615	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:52825615G>T	uc003dfs.2	+	21	2601	c.2577G>T	c.(2575-2577)GTG>GTT	p.V859V	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_Silent_p.V460V|ITIH1_uc010hmo.1_Silent_p.V413V|ITIH1_uc003dfu.2_Silent_p.V225V	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	859	Hyaluronan-binding.				hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		CCACGATGGTGGTGAGGAACC	0.582			NA											31	47					6.00712e-18	1.01072e-17	0.002445	1	0
C3orf67	200844	broad.mit.edu	37	3	58855927	58855927	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:58855927C>T	uc003dkt.1	-	8	858	c.449G>A	c.(448-450)AGA>AAA	p.R150K	C3orf67_uc003dks.1_5'Flank|uc003dku.1_Intron|C3orf67_uc003dkv.1_5'UTR|C3orf67_uc003dkw.2_Missense_Mutation_p.R58K	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	150											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		GTTATTCCTTCTGCCAGAGAG	0.438			NA											5	47					0	0	0.000602	0	0
MITF	4286	broad.mit.edu	37	3	70014355	70014355	+	Silent	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:70014355C>A	uc003dnz.2	+	10	1635	c.1519C>A	c.(1519-1521)CGG>AGG	p.R507R	MITF_uc011bgb.1_Silent_p.R455R|MITF_uc003doa.2_Silent_p.R506R|MITF_uc003dob.2_Silent_p.R491R|MITF_uc003dod.2_Silent_p.R482R|MITF_uc003doe.2_Silent_p.R400R|MITF_uc003dof.2_Silent_p.R406R	NM_198159	NP_937802	O75030	MITF_HUMAN	microphthalmia-associated transcription factor	513					melanocyte differentiation|multicellular organismal development|protein complex assembly	nucleus|protein complex	DNA binding|protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			ovary(2)	2		Lung NSC(201;0.0384)|Prostate(884;0.0526)		BRCA - Breast invasive adenocarcinoma(55;3.07e-05)|Epithelial(33;0.000138)|LUSC - Lung squamous cell carcinoma(21;0.008)|Lung(16;0.0107)|KIRC - Kidney renal clear cell carcinoma(39;0.204)|Kidney(39;0.239)		AACAAGCAGCCGGAGGAGCAG	0.522	Melanoma(29;269 969 31479 41502 42961)		NA	A		melanoma 		Waardenburg syndrome type 2|Tietz syndrome						28	46					2.47511e-08	3.83569e-08	0.008361	1	0
ZNF654	55279	broad.mit.edu	37	3	88189046	88189046	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:88189046G>A	uc003dqv.2	+	1	785	c.586G>A	c.(586-588)GAA>AAA	p.E196K	CGGBP1_uc003dqu.2_Intron	NM_018293	NP_060763	Q8IZM8	ZN654_HUMAN	zinc finger protein 654	196					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(201;0.0283)		UCEC - Uterine corpus endometrioid carcinoma (27;0.194)|LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00661)		CACAGATCAAGAAGGAAACTT	0.323			NA											4	24					0	0	0.000602	0	0
PROS1	5627	broad.mit.edu	37	3	93603605	93603605	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:93603605C>T	uc003drb.3	-	12	1800	c.1459G>A	c.(1459-1461)GGT>AGT	p.G487S	PROS1_uc010hoo.2_Missense_Mutation_p.G356S|PROS1_uc003dqz.3_Missense_Mutation_p.G356S	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	487	Laminin G-like 2.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	ATTCCAGAACCAGGATAGTAG	0.318			NA											6	45					0	0	0.004482	0	0
NSUN3	63899	broad.mit.edu	37	3	93812983	93812983	+	Splice_Site	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:93812983G>T	uc003drl.1	+	4	583	c.467_splice	c.e4-1	p.G156_splice		NM_022072	NP_071355	Q9H649	NSUN3_HUMAN	NOL1/NOP2/Sun domain family, member 3								methyltransferase activity			skin(1)	1						TTTTTATTTAGGTTATCTTCA	0.299			NA											5	11					0.00116845	0.00169201	0.001168	1	0
NFKBIZ	64332	broad.mit.edu	37	3	101576171	101576171	+	Silent	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:101576171C>A	uc003dvp.2	+	11	2086	c.1971C>A	c.(1969-1971)GCC>GCA	p.A657A	NFKBIZ_uc003dvo.2_Silent_p.A557A|NFKBIZ_uc010hpo.2_Silent_p.A557A|NFKBIZ_uc003dvq.2_Silent_p.A535A	NM_031419	NP_113607	Q9BYH8	IKBZ_HUMAN	nuclear factor of kappa light polypeptide gene	657	Interaction with NFKB1/p50 (By similarity).|ANK 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(2)	2						ATGTTGCTGCCAGCTTGCAGT	0.478			NA											43	58					4.01765e-15	6.6751e-15	0.002222	1	0
BBX	56987	broad.mit.edu	37	3	107491703	107491703	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:107491703G>A	uc010hpr.2	+	11	1462	c.1135G>A	c.(1135-1137)GAT>AAT	p.D379N	BBX_uc003dwk.3_Missense_Mutation_p.D379N|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Missense_Mutation_p.D400N|BBX_uc003dwm.3_Missense_Mutation_p.D379N|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			ATTGCAAATAGATGACATAAT	0.313			NA											6	70					0	0	0.001168	0	0
CCDC80	151887	broad.mit.edu	37	3	112358314	112358314	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:112358314C>T	uc003dzf.2	-	2	657	c.439G>A	c.(439-441)GGG>AGG	p.G147R	CCDC80_uc011bhv.1_Missense_Mutation_p.G147R|CCDC80_uc003dzg.2_Missense_Mutation_p.G147R|CCDC80_uc003dzh.1_Missense_Mutation_p.G147R	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	147										ovary(2)	2						CTGTTCTTCCCTGCAAAGCTG	0.562			NA											36	48					0	0	0.005524	0	0
POLQ	10721	broad.mit.edu	37	3	121258347	121258347	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:121258347G>A	uc003eee.3	-	4	693	c.564C>T	c.(562-564)GTC>GTT	p.V188V		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	188	Helicase ATP-binding.				DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CAATTGTGCAGACTGCAATAT	0.383	Pancreas(152;907 1925 26081 31236 36904)		NA						DNA_polymerases_(catalytic_subunits)					10	69					0	0	0.008291	0	0
ATP1B3	483	broad.mit.edu	37	3	141622499	141622499	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:141622499C>T	uc003eug.1	+	2	321	c.147C>T	c.(145-147)TTC>TTT	p.F49F	ATP1B3_uc011bne.1_RNA|ATP1B3_uc003euh.1_Silent_p.F35F	NM_001679	NP_001670	P54709	AT1B3_HUMAN	Na+/K+ -ATPase beta 3 subunit	49	Helical; Signal-anchor for type II membrane protein; (Potential).				ATP biosynthetic process|blood coagulation|leukocyte migration	melanosome|sodium:potassium-exchanging ATPase complex	protein binding|sodium:potassium-exchanging ATPase activity				0						TTTATGGGTTCCTGGCTGCAC	0.423			NA											10	93					0	0	0.000978	0	0
PPM1L	151742	broad.mit.edu	37	3	160679533	160679533	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:160679533G>A	uc003fdr.2	+	2	510	c.409G>A	c.(409-411)GAA>AAA	p.E137K	PPM1L_uc003fds.2_5'UTR|PPM1L_uc003fdt.2_Missense_Mutation_p.E10K|PPM1L_uc010hwf.2_RNA	NM_139245	NP_640338	Q5SGD2	PPM1L_HUMAN	protein phosphatase 1 (formerly 2C)-like	137	Cytoplasmic (Potential).|PP2C-like.				protein dephosphorylation|sphingolipid metabolic process	endoplasmic reticulum membrane|integral to membrane|protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			breast(1)	1			Lung(72;0.00149)|LUSC - Lung squamous cell carcinoma(72;0.00216)			GACTGCAGCTGAATATGTAAA	0.408	Pancreas(86;250 1994 13715 43211)		NA											7	28					0	0	0.00308	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540649	169540649	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:169540649C>G	uc003fgb.2	+	1	940	c.940C>G	c.(940-942)CAT>GAT	p.H314D		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	314	LRR 13.										0						AAGCCAGAACCATCTGCACCA	0.567			NA											13	20					0	0	0.00245	0	0
ATP13A4	84239	broad.mit.edu	37	3	193156315	193156315	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:193156315G>A	uc003ftd.2	-	23	2729	c.2621C>T	c.(2620-2622)TCA>TTA	p.S874L	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	874	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		AGTGAAAGGTGAGGCCACAGA	0.448			NA											6	28					0	0	0.001168	0	0
BOD1L	259282	broad.mit.edu	37	4	13600671	13600671	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:13600671G>C	uc003gmz.1	-	10	7970	c.7853C>G	c.(7852-7854)TCT>TGT	p.S2618C	BOD1L_uc010idr.1_Missense_Mutation_p.S1955C	NM_148894	NP_683692	Q8NFC6	BOD1L_HUMAN	biorientation of chromosomes in cell division	2618							DNA binding			ovary(5)|breast(1)	6						TTTCTCAGCAGATGCTTGATC	0.413			NA											12	104					0	0	0.000978	0	0
SCFD2	152579	broad.mit.edu	37	4	54218830	54218830	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:54218830G>A	uc003gzu.2	-	2	1076	c.942C>T	c.(940-942)CTC>CTT	p.L314L	SCFD2_uc010igm.2_Silent_p.L314L	NM_152540	NP_689753	Q8WU76	SCFD2_HUMAN	sec1 family domain containing 2	314					protein transport|vesicle docking involved in exocytosis					ovary(2)|pancreas(1)	3			GBM - Glioblastoma multiforme(3;1.07e-26)|LUSC - Lung squamous cell carcinoma(32;0.0134)			GGAGTGCAGTGAGCGCTATCA	0.423			NA											4	42					0	0	0.000248	0	0
SULT1B1	27284	broad.mit.edu	37	4	70615512	70615512	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:70615512G>A	uc003hen.2	-	4	600	c.302C>T	c.(301-303)CCA>CTA	p.P101L		NM_014465	NP_055280	O43704	ST1B1_HUMAN	sulfotransferase family, cytosolic, 1B, member	101					3'-phosphoadenosine 5'-phosphosulfate metabolic process|cellular biogenic amine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|thyroid hormone metabolic process|xenobiotic metabolic process	cytosol					0						CCGGGGTGATGGATTCTTCTC	0.383			NA											13	57					0	0	0.004007	0	0
THAP6	152815	broad.mit.edu	37	4	76442022	76442022	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:76442022G>A	uc003him.2	+	3	218	c.121G>A	c.(121-123)GCA>ACA	p.A41T	RCHY1_uc003hij.2_5'Flank|RCHY1_uc003hik.2_5'Flank|RCHY1_uc003hil.2_5'Flank|RCHY1_uc010iip.2_5'Flank|RCHY1_uc010iiq.2_5'Flank|RCHY1_uc010iir.2_5'Flank|THAP6_uc010iis.1_5'UTR|THAP6_uc003hin.2_Missense_Mutation_p.A41T|THAP6_uc011cbm.1_Missense_Mutation_p.A41T|THAP6_uc010iiu.1_RNA|THAP6_uc003hio.1_RNA|THAP6_uc010iiv.2_Missense_Mutation_p.A41T	NM_144721	NP_653322	Q8TBB0	THAP6_HUMAN	THAP domain containing 6	41	THAP-type.					microtubule cytoskeleton	DNA binding|metal ion binding				0			Lung(101;0.0973)|LUSC - Lung squamous cell carcinoma(112;0.122)			ATGGGTATTAGCAATGAAAAG	0.318			NA											25	27					0	0	0.004656	0	0
FAM190A	401145	broad.mit.edu	37	4	91229569	91229569	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:91229569C>T	uc003hsv.3	+	2	474	c.134C>T	c.(133-135)TCT>TTT	p.S45F	FAM190A_uc003hsu.3_Missense_Mutation_p.S45F|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.S45F	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	45	Ser-rich.									large_intestine(1)|ovary(1)	2						CACAGTTCCTCTCCTTCCAGC	0.463			NA											5	52					0	0	0.000602	0	0
GK3P	2713	broad.mit.edu	37	4	166200179	166200179	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:166200179G>C	uc003ird.3	-	1	997	c.619C>G	c.(619-621)CTT>GTT	p.L207V	KLHL2_uc003irb.2_Intron|KLHL2_uc011cjm.1_Intron|KLHL2_uc003irc.2_Intron|KLHL2_uc010ira.2_Intron	NM_000167	NP_000158			glycerol kinase isoform b												0						ATGTTGAAAAGCATAGTCCTA	0.383			NA											13	14					0	0	0.00245	0	0
SLC12A7	10723	broad.mit.edu	37	5	1083927	1083927	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:1083927C>A	uc003jbu.2	-	8	1128	c.1062G>T	c.(1060-1062)GAG>GAT	p.E354D		NM_006598	NP_006589	Q9Y666	S12A7_HUMAN	solute carrier family 12 (potassium/chloride	354					potassium ion transport|sodium ion transport	integral to plasma membrane	potassium:chloride symporter activity			skin(2)|large_intestine(1)|ovary(1)	4	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;5.44e-09)		Epithelial(17;0.000497)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00241)|Lung(60;0.165)		Potassium Chloride(DB00761)	GGATGAAGTACTCGTCACAGG	0.647			NA											39	108					2.00842e-17	3.35792e-17	0.002522	1	0
DNAH5	1767	broad.mit.edu	37	5	13870955	13870955	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:13870955T>C	uc003jfd.2	-	24	3797	c.3755A>G	c.(3754-3756)GAT>GGT	p.D1252G		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1252	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AATCCGAATATCATCTAGGTC	0.368			NA							Kartagener_syndrome				26	45					0	0	0.00632	0	0
RNASEN	29102	broad.mit.edu	37	5	31464414	31464415	+	Nonsense_Mutation	DNP	TC	TC	AT			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	TC	TC	-	-	TC	TC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:31464414_31464415TC>AT	uc003jhg.2	-	19	2861_2862	c.2502_2503GA>AT	c.(2500-2505)ATGAGA>ATATGA	p.834_835MR>I*	RNASEN_uc003jhh.2_Nonsense_Mutation_p.797_798MR>I*|RNASEN_uc003jhi.2_Nonsense_Mutation_p.797_798MR>I*	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	834_835	Necessary for interaction with DGCR8 and pri-miRNA processing activity.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						ACTTCTCGTCTCATTGTATTCT	0.421			NA											25	31					0	0	0.004672	0	0
SPEF2	79925	broad.mit.edu	37	5	35628627	35628627	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:35628627G>A	uc003jjo.2	+	2	235	c.124G>A	c.(124-126)GAA>AAA	p.E42K	SPEF2_uc003jjn.1_Missense_Mutation_p.E42K|SPEF2_uc003jjq.3_Missense_Mutation_p.E42K	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	42	CH.				nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACACAAGTTTGAACTTCAGGA	0.284			NA											5	84					0	0	0.001168	0	0
BDP1	55814	broad.mit.edu	37	5	70806371	70806371	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:70806371G>C	uc003kbp.1	+	17	3715	c.3452G>C	c.(3451-3453)AGA>ACA	p.R1151T	BDP1_uc003kbn.1_Missense_Mutation_p.R1151T|BDP1_uc003kbo.2_Missense_Mutation_p.R1151T	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1151	7.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		ACTGGAAGAAGAGAAATATCC	0.473			NA											11	45					0	0	0.000978	0	0
EDIL3	10085	broad.mit.edu	37	5	83476317	83476317	+	Nonsense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:83476317G>T	uc003kio.1	-	4	668	c.249C>A	c.(247-249)TGC>TGA	p.C83*	EDIL3_uc003kip.1_Nonsense_Mutation_p.C73*	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	83	EGF-like 2.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		CTCCATTATGGCATGGATTAG	0.378			NA											8	4					3.86212e-05	5.74978e-05	0.008291	1	0
ADAMTS19	171019	broad.mit.edu	37	5	128932353	128932353	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:128932353C>G	uc003kvb.1	+	8	1456	c.1456C>G	c.(1456-1458)CAC>GAC	p.H486D	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	486	Peptidase M12B.	Zinc; catalytic (By similarity).			proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TGAAATGGGTCACAAGTAAGT	0.313			NA											40	13					0	0	0.006999	0	0
P4HA2	8974	broad.mit.edu	37	5	131534590	131534590	+	Silent	SNP	C	C	T	rs141851075		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:131534590C>T	uc003kwh.2	-	11	1851	c.1287G>A	c.(1285-1287)CCG>CCA	p.P429P	P4HA2_uc003kwg.2_Silent_p.P429P|P4HA2_uc003kwi.2_Silent_p.P429P|P4HA2_uc003kwk.2_Silent_p.P429P|P4HA2_uc003kwl.2_Silent_p.P429P|P4HA2_uc003kwj.2_Silent_p.P429P	NM_004199	NP_004190	O15460	P4HA2_HUMAN	prolyl 4-hydroxylase, alpha II subunit isoform 1	429	Fe2OG dioxygenase.					endoplasmic reticulum lumen	electron carrier activity|iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity|protein binding				0		all_cancers(142;0.103)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)		L-Proline(DB00172)|Succinic acid(DB00139)	AGTCGAAGTGCGGTTCATACT	0.483	Esophageal Squamous(68;117 1135 17362 19256 34242)		NA											17	8					0	0	0.007413	0	0
LECT2	3950	broad.mit.edu	37	5	135288629	135288629	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:135288629C>T	uc003lbe.1	-	2	275	c.74G>A	c.(73-75)TGT>TAT	p.C25Y		NM_002302	NP_002293	O14960	LECT2_HUMAN	leukocyte cell-derived chemotaxin 2 precursor	25					chemotaxis|skeletal system development	cytoplasm|extracellular space				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CTTGCCAGCACATATATTAGC	0.517			NA											6	79					0	0	0.001984	0	0
PCDHA3	56145	broad.mit.edu	37	5	140182020	140182020	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:140182020T>A	uc003lhf.2	+	1	1238	c.1238T>A	c.(1237-1239)CTG>CAG	p.L413Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.L413Q	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	413	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GACAGCCCTCTGGACCGCGAG	0.637			NA											135	113					0	0	0.00361	0	0
PCDHB3	56132	broad.mit.edu	37	5	140480363	140480363	+	Silent	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:140480363T>C	uc003lio.2	+	1	130	c.130T>C	c.(130-132)TTA>CTA	p.L44L	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	44	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAAGGGCTTTTTAATAGCCAA	0.502			NA											21	92					0	0	0.008871	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558514	140558514	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:140558514G>A	uc011dai.1	+	1	1085	c.899G>A	c.(898-900)GGA>GAA	p.G300E	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	300	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTTGACAGGAGAAATTCGA	0.408			NA											6	134					0	0	0.001168	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558698	140558698	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:140558698G>T	uc011dai.1	+	1	1269	c.1083G>T	c.(1081-1083)GCG>GCT	p.A361A	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	361	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGAGAATGCGCCTGAAACTG	0.448			NA											74	155					1.10345e-40	1.98248e-40	0.00361	1	0
PCDHB8	56128	broad.mit.edu	37	5	140559035	140559035	+	Missense_Mutation	SNP	G	G	A	rs149925643		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:140559035G>A	uc011dai.1	+	1	1606	c.1420G>A	c.(1420-1422)GTC>ATC	p.V474I	PCDHB16_uc003liv.2_5'Flank|PCDHB16_uc010jfw.1_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	474	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CATCGGCAGCGTCAGCGCCAC	0.662			NA											35	165					0	0	0.005524	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147051334	147051334	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:147051334G>A	uc003loq.1	-	2	418	c.36C>T	c.(34-36)CCC>CCT	p.P12P	JAKMIP2_uc011dbx.1_Intron|JAKMIP2_uc003lor.1_Silent_p.P12P|JAKMIP2_uc010jgo.1_Silent_p.P12P	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	12						Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGAGTGCCTCGGGCTTCTCGC	0.473			NA											33	36					0	0	0.002836	0	0
PDE6A	5145	broad.mit.edu	37	5	149314157	149314157	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:149314157C>A	uc003lrg.3	-	2	719	c.599G>T	c.(598-600)GGA>GTA	p.G200V		NM_000440	NP_000431	P16499	PDE6A_HUMAN	phosphodiesterase 6A	200	GAF 1.				cytosolic calcium ion homeostasis|GMP metabolic process|platelet activation|signal transduction|visual perception	cytosol|plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|metal ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			GAAGTGGGATCCATCCACTTT	0.458			NA											37	51					3.33393e-15	5.55656e-15	0.004878	1	0
TIGD6	81789	broad.mit.edu	37	5	149375450	149375450	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:149375450C>G	uc003lri.2	-	2	1224	c.462G>C	c.(460-462)AAG>AAC	p.K154N	TIGD6_uc003lrj.2_Missense_Mutation_p.K154N	NM_030953	NP_112215	Q17RP2	TIGD6_HUMAN	hypothetical protein LOC81789	154					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.000962)|Kidney(363;0.00147)			ACTCATTAATCTTATCTATTC	0.413			NA											124	123					0	0	0.00361	0	0
GABRG2	2566	broad.mit.edu	37	5	161524807	161524807	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:161524807C>T	uc003lyz.3	+	4	849	c.491C>T	c.(490-492)ACC>ATC	p.T164I	GABRG2_uc010jjc.2_Missense_Mutation_p.T164I|GABRG2_uc003lyy.3_Missense_Mutation_p.T164I|GABRG2_uc011dej.1_Missense_Mutation_p.T69I	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	164	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		CACTGGATCACCACCCCCAAC	0.423			NA											5	92					0	0	0.000602	0	0
GABRG2	2566	broad.mit.edu	37	5	161569228	161569228	+	Silent	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:161569228C>A	uc003lyz.3	+	7	1186	c.828C>A	c.(826-828)ACC>ACA	p.T276T	GABRG2_uc010jjc.2_Silent_p.T316T|GABRG2_uc003lyy.3_Silent_p.T276T|GABRG2_uc011dej.1_Silent_p.T181T	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	276	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GATACTTTACCATCCAGACCT	0.433			NA											92	66					6.21051e-42	1.11958e-41	0.00361	1	0
DOCK2	1794	broad.mit.edu	37	5	169174491	169174491	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:169174491A>T	uc003maf.2	+	23	2439	c.2359A>T	c.(2359-2361)ACT>TCT	p.T787S	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.T279S	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	787					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TCAATACAAAACTACCATCCT	0.358			NA											19	15					0	0	0.001523	0	0
LCP2	3937	broad.mit.edu	37	5	169697723	169697723	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:169697723C>T	uc003man.1	-	7	730	c.523G>A	c.(523-525)GAC>AAC	p.D175N	LCP2_uc011det.1_Missense_Mutation_p.D4N|LCP2_uc010jjo.1_5'Flank	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	175					immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		GGGCCCTTACCGATGTACATG	0.582			NA											13	85					0	0	0.003163	0	0
ZNF354C	30832	broad.mit.edu	37	5	178506767	178506767	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr5:178506767G>A	uc003mju.2	+	5	1449	c.1334G>A	c.(1333-1335)TGT>TAT	p.C445Y		NM_014594	NP_055409	Q86Y25	Z354C_HUMAN	zinc finger protein 354C	445	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(89;0.00065)|all_epithelial(37;0.000153)|Renal(175;0.000159)|Lung NSC(126;0.00175)|all_lung(126;0.00309)	all_cancers(40;0.19)|all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.247)		TGTGAGGAATGTGGGAAAGCC	0.398			NA											6	80					0	0	0.001168	0	0
HUS1B	135458	broad.mit.edu	37	6	656554	656554	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:656554C>A	uc003mtg.2	-	1	411	c.391G>T	c.(391-393)GAT>TAT	p.D131Y	EXOC2_uc003mtd.2_Intron|EXOC2_uc003mte.2_Intron|EXOC2_uc011dho.1_Intron	NM_148959	NP_683762	Q8NHY5	HUS1B_HUMAN	HUS1 checkpoint protein B	131											0	Ovarian(93;0.0733)	Breast(5;0.00139)|all_lung(73;0.0691)|all_hematologic(90;0.0895)		OV - Ovarian serous cystadenocarcinoma(45;0.041)|BRCA - Breast invasive adenocarcinoma(62;0.0965)		ACGGGCAGATCGTGCACCACG	0.731			NA											25	12					2.48779e-11	3.98348e-11	0.005443	1	0
CDYL	9425	broad.mit.edu	37	6	4954210	4954210	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:4954210G>A	uc003mwi.2	+	9	1848	c.1717G>A	c.(1717-1719)GTG>ATG	p.V573M	CDYL_uc003mwj.2_Missense_Mutation_p.V519M|CDYL_uc003mwk.2_Missense_Mutation_p.V284M|CDYL_uc011dhx.1_Missense_Mutation_p.V387M|CDYL_uc011dhy.1_Missense_Mutation_p.V387M	NM_001143971	NP_001137443	Q9Y232	CDYL1_HUMAN	chromodomain protein, Y chromosome-like isoform	573					regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus	histone acetyltransferase activity				0	Ovarian(93;0.11)	all_hematologic(90;0.0901)|Lung NSC(90;0.244)		OV - Ovarian serous cystadenocarcinoma(45;0.182)		GGAGTGTGAGGTGCTGAAGAA	0.562			NA											7	44					0	0	0.001984	0	0
HIVEP1	3096	broad.mit.edu	37	6	12136102	12136102	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:12136102A>T	uc003nac.2	+	7	6643	c.6464A>T	c.(6463-6465)GAT>GTT	p.D2155V	HIVEP1_uc011diq.1_Intron	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2155					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GGTTTAATAGATGAACAGGAT	0.294			NA											26	67					0	0	0.003954	0	0
CAP2	10486	broad.mit.edu	37	6	17539531	17539531	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:17539531C>G	uc003ncb.2	+	8	911	c.668C>G	c.(667-669)TCT>TGT	p.S223C	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.S197C|CAP2_uc011djb.1_Missense_Mutation_p.S159C|CAP2_uc011djc.1_Missense_Mutation_p.S111C|CAP2_uc011djd.1_Intron	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	223					activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TCAGCGTTTTCTGTCCTCTCC	0.552			NA											6	172					0	0	0.001168	0	0
HIST1H3C	8352	broad.mit.edu	37	6	26045759	26045759	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:26045759C>T	uc003nfv.2	+	1	121	c.121C>T	c.(121-123)CGC>TGC	p.R41C	HIST1H2BB_uc003nfu.2_5'Flank	NM_003531	NP_003522	P68431	H31_HUMAN	histone cluster 1, H3c	41					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						GAAACCTCATCGCTACCGCCC	0.642			NA											12	77					0	0	0.000978	0	0
HIST1H1E	3008	broad.mit.edu	37	6	26157077	26157077	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:26157077G>A	uc003ngq.2	+	1	519	c.459G>A	c.(457-459)AAG>AAA	p.K153K	HIST1H2BD_uc003ngr.2_5'Flank|HIST1H2BD_uc003ngs.2_5'Flank	NM_005321	NP_005312	P10412	H14_HUMAN	histone cluster 1, H1e	153					nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding			large_intestine(1)|ovary(1)	2						GCGCCAAGAAGACCCCAAAGA	0.602			NA											5	22					0	0	0.000602	0	0
HIST1H2BL	8340	broad.mit.edu	37	6	27775480	27775480	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:27775480C>T	uc003njl.2	-	1	230	c.205G>A	c.(205-207)GAC>AAC	p.D69N	HIST1H3H_uc003njm.2_5'Flank	NM_003519	NP_003510	Q99880	H2B1L_HUMAN	histone cluster 1, H2bl	69					nucleosome assembly	nucleosome|nucleus	DNA binding				0						TCGAAGATGTCGTTGACGAAG	0.597			NA											27	229					0	0	0.003954	0	0
PPP1R10	5514	broad.mit.edu	37	6	30570166	30570166	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:30570166G>A	uc003nqn.1	-	19	2812	c.2260C>T	c.(2260-2262)CAC>TAC	p.H754Y	PPP1R10_uc010jsc.1_Missense_Mutation_p.H408Y	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	754	Gly-rich.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						GGGCCTTCGTGAGGACGATGC	0.667			NA											14	159					0	0	0.00245	0	0
MDC1	9656	broad.mit.edu	37	6	30672754	30672754	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:30672754C>T	uc003nrg.3	-	10	4646	c.4206G>A	c.(4204-4206)AAG>AAA	p.K1402K	MDC1_uc003nrf.3_Intron|MDC1_uc011dmp.1_Silent_p.K1009K	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	1402	Pro-rich.|Interaction with the PRKDC complex.				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TTTCAGGGGTCTTGCCAGAGG	0.587			NA						Other_conserved_DNA_damage_response_genes					41	131					0	0	0.007835	0	0
MICB	4277	broad.mit.edu	37	6	31477606	31477606	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:31477606G>A	uc003ntn.3	+	6	1188	c.1072G>A	c.(1072-1074)GAC>AAC	p.D358N	MICB_uc011dnm.1_Missense_Mutation_p.D326N|MICB_uc003nto.3_Missense_Mutation_p.D315N	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	358	Cytoplasmic (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						TGGGACAGGAGACCACAGGGA	0.562			NA											14	93					0	0	0.00245	0	0
BTNL2	56244	broad.mit.edu	37	6	32372761	32372761	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:32372761C>T	uc003obg.1	-	2	382	c.382G>A	c.(382-384)GAT>AAT	p.D128N	BTNL2_uc010jty.1_Intron|BTNL2_uc010jtz.1_Intron|BTNL2_uc010jua.1_Intron	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	128	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						TAGTTCCCATCCTGGAAATGG	0.458			NA											8	138					0	0	0.004482	0	0
ZNF292	23036	broad.mit.edu	37	6	87969704	87969704	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:87969704G>T	uc003plm.3	+	8	6398	c.6357G>T	c.(6355-6357)CAG>CAT	p.Q2119H		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2119	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		GTGTTCACCAGGGATGCTTTG	0.428			NA											11	32					1.61879e-10	2.57646e-10	0.001368	1	0
MDN1	23195	broad.mit.edu	37	6	90400442	90400442	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:90400442C>T	uc003pnn.1	-	64	10815	c.10699G>A	c.(10699-10701)GAG>AAG	p.E3567K		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	3567	Poly-Glu.				protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		TCCTCCTCCTCTTCACTCAGG	0.517			NA											4	22					0	0	0.000602	0	0
C6orf167	253714	broad.mit.edu	37	6	97613332	97613332	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:97613332C>A	uc003ppb.2	-	21	3277	c.3011G>T	c.(3010-3012)GGC>GTC	p.G1004V	C6orf167_uc011eaf.1_Missense_Mutation_p.G964V	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	1004					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		GATACACATGCCCTACAAGGA	0.348			NA											6	3					8.12818e-05	0.000119998	0.001984	1	0
PRDM1	639	broad.mit.edu	37	6	106554955	106554955	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:106554955A>T	uc003prd.2	+	7	2306	c.2072A>T	c.(2071-2073)CAG>CTG	p.Q691L	PRDM1_uc003pre.2_Missense_Mutation_p.Q557L	NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	691					negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		AAGTGCTCCCAGTGCCACAAG	0.597			NA	D|N|Mis|F|S		DLBCL								37	77					0	0	0.005524	0	0
AMD1	262	broad.mit.edu	37	6	111211547	111211547	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:111211547G>T	uc003puk.1	+	4	737	c.415G>T	c.(415-417)GCA>TCA	p.A139S	AMD1_uc011eay.1_Missense_Mutation_p.A70S|AMD1_uc011eaz.1_Missense_Mutation_p.A110S|AMD1_uc011eba.1_Intron|AMD1_uc003pul.1_Intron	NM_001634	NP_001625	P17707	DCAM_HUMAN	adenosylmethionine decarboxylase 1 isoform 1	139					spermidine biosynthetic process|spermine biosynthetic process	cytosol	adenosylmethionine decarboxylase activity			upper_aerodigestive_tract(1)	1		all_cancers(87;3.83e-05)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0209)		OV - Ovarian serous cystadenocarcinoma(136;0.0522)|Epithelial(106;0.111)|all cancers(137;0.143)	S-Adenosylmethionine(DB00118)	GTTTCTTAATGCAATTTTCCC	0.333			NA											16	17					1.00905e-13	1.65571e-13	0.008871	1	0
HEY2	23493	broad.mit.edu	37	6	126080669	126080669	+	Silent	SNP	C	C	T	rs144879330	byFrequency	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:126080669C>T	uc003qad.2	+	5	926	c.735C>T	c.(733-735)AGC>AGT	p.S245S	HEY2_uc011ebr.1_Silent_p.S199S	NM_012259	NP_036391	Q9UBP5	HEY2_HUMAN	hairy/enhancer-of-split related with YRPW motif	245					negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription initiation from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|Notch signaling pathway|smooth muscle cell differentiation|transcription, DNA-dependent	transcriptional repressor complex	histone deacetylase binding|RNA polymerase II activating transcription factor binding|sequence-specific DNA binding			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (4;0.0608)|GBM - Glioblastoma multiforme(226;0.0361)|all cancers(137;0.193)		CCACGGGCAGCGTCGCCCCCT	0.662			NA											7	165					0	0	0.004482	0	0
MYB	4602	broad.mit.edu	37	6	135509014	135509014	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:135509014G>A	uc003qfc.2	+	3	383	c.184G>A	c.(184-186)GAC>AAC	p.D62N	MYB_uc003qfh.2_Missense_Mutation_p.D62N|MYB_uc003qfi.2_Missense_Mutation_p.D62N|MYB_uc010kgi.2_Missense_Mutation_p.D62N|MYB_uc003qfq.2_Missense_Mutation_p.D62N|MYB_uc010kgj.2_Missense_Mutation_p.D62N|MYB_uc003qfo.2_Missense_Mutation_p.D62N|MYB_uc003qfu.2_Missense_Mutation_p.D62N|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_5'UTR|MYB_uc003qft.2_Intron|MYB_uc003qfw.2_Intron|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Missense_Mutation_p.D62N|MYB_uc003qgd.1_5'UTR	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	62	HTH myb-type 1.				blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		TGGAACAGATGACTGGAAAGT	0.333			NA	T	NFIB	adenoid cystic carcinoma								8	15					0	0	0.006214	0	0
ECT2L	345930	broad.mit.edu	37	6	139206649	139206649	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:139206649G>A	uc003qif.1	+	15	2138	c.2035G>A	c.(2035-2037)GAA>AAA	p.E679K	ECT2L_uc011edq.1_Intron	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	679	DH.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						TTAGTGCAGAGAAATGATACC	0.438			NA											5	24					0	0	0.001168	0	0
SASH1	23328	broad.mit.edu	37	6	148867274	148867274	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:148867274C>A	uc003qme.1	+	19	3947	c.3472C>A	c.(3472-3474)CGC>AGC	p.R1158S	SASH1_uc003qmf.1_Missense_Mutation_p.R568S	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	1158							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		GAAGCAGCACCGCATGGCGGT	0.582			NA											9	14					0.00136819	0.0019705	0.001368	1	0
PLG	5340	broad.mit.edu	37	6	161128812	161128812	+	Missense_Mutation	SNP	G	G	C	rs143079629	byFrequency	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:161128812G>C	uc003qtm.3	+	3	329	c.266G>C	c.(265-267)AGA>ACA	p.R89T		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	89	PAN.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ATTAGGATGAGAGATGTAGTT	0.269			NA											39	76					0	0	0.007835	0	0
AGPAT4	56895	broad.mit.edu	37	6	161567586	161567586	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:161567586C>T	uc003qtr.1	-	7	1040	c.813G>A	c.(811-813)TCG>TCA	p.S271S	AGPAT4_uc003qts.1_Silent_p.S131S|AGPAT4_uc011egb.1_Silent_p.S109S	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	271					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		GCAGCCAGGCCGAGCACTCGT	0.597			NA											5	59					0	0	0.000602	0	0
C6orf118	168090	broad.mit.edu	37	6	165715467	165715467	+	Missense_Mutation	SNP	T	T	A	rs138289053		TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:165715467T>A	uc003qum.3	-	2	380	c.344A>T	c.(343-345)CAC>CTC	p.H115L	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	115											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		CAGGGCCGTGTGGATGGTGAA	0.657			NA											26	30					0	0	0.008361	0	0
C6orf118	168090	broad.mit.edu	37	6	165723069	165723069	+	Nonsense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr6:165723069C>A	uc003qum.3	-	1	43	c.7G>T	c.(7-9)GAG>TAG	p.E3*	C6orf118_uc011egi.1_5'Flank	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	3											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TCCCGCTCCTCCGCCATCGCT	0.567			NA											15	12					3.52763e-06	5.26661e-06	0.00499	1	0
MICALL2	79778	broad.mit.edu	37	7	1477738	1477738	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:1477738T>A	uc003skj.3	-	12	2453	c.2306A>T	c.(2305-2307)GAG>GTG	p.E769V	MICALL2_uc003skh.3_5'UTR|MICALL2_uc003ski.3_Missense_Mutation_p.E256V	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	769	Potential.					cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		CTCACCTCCCTCGGCCGCCCG	0.726			NA											3	2					0	0	0.004672	0	0
C7orf27	221927	broad.mit.edu	37	7	2577957	2577957	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:2577957C>T	uc003smi.2	-	14	2254	c.2212G>A	c.(2212-2214)GAG>AAG	p.E738K	C7orf27_uc003smh.3_Missense_Mutation_p.E170K	NM_152743	NP_689956	Q6PJG6	BRAT1_HUMAN	hypothetical protein LOC221927 precursor	738					response to ionizing radiation	nucleus	protein binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;2.91e-14)		CCCCTGGCCTCCCGCAGGCTG	0.662			NA											10	48					0	0	0.008291	0	0
KIAA0415	9907	broad.mit.edu	37	7	4828518	4828518	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:4828518G>A	uc003sne.2	+	13	1726	c.1643G>A	c.(1642-1644)CGC>CAC	p.R548H	KIAA0415_uc010ksp.2_RNA|KIAA0415_uc003snf.2_5'UTR	NM_014855	NP_055670	O43299	K0415_HUMAN	hypothetical protein LOC9907	548					cell death|double-strand break repair via homologous recombination	cytoplasm|nucleus	protein binding			central_nervous_system(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.091)|OV - Ovarian serous cystadenocarcinoma(56;8.35e-15)		GGCTGTGCCCGCGTGGCCCAG	0.697			NA											5	27					0	0	0.001168	0	0
ICA1	3382	broad.mit.edu	37	7	8198169	8198169	+	Silent	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:8198169T>A	uc003srm.2	-	7	760	c.693A>T	c.(691-693)CTA>CTT	p.L231L	ICA1_uc010ktr.2_Silent_p.L231L|ICA1_uc003srl.2_Silent_p.L219L|ICA1_uc003srn.3_Silent_p.L157L|ICA1_uc003srp.3_Silent_p.L230L|ICA1_uc010kts.2_RNA|ICA1_uc003srq.2_Silent_p.L231L|ICA1_uc003srr.2_Silent_p.L230L|ICA1_uc003sro.3_Silent_p.L231L|ICA1_uc011jxg.1_Silent_p.L231L|ICA1_uc003srs.1_Silent_p.L231L	NM_022307	NP_071682	Q05084	ICA69_HUMAN	islet cell autoantigen 1	231	AH.				neurotransmitter transport	cell junction|cytosol|Golgi membrane|nucleus|secretory granule membrane|synaptic vesicle membrane|transport vesicle membrane				central_nervous_system(1)	1		Ovarian(82;0.0612)		UCEC - Uterine corpus endometrioid carcinoma (126;0.246)		GGTATGTTGCTAGCATGTGAG	0.368			NA											25	41					0	0	0.005443	0	0
FAM188B	84182	broad.mit.edu	37	7	30830881	30830881	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:30830881C>T	uc003tbt.2	+	5	841	c.764C>T	c.(763-765)ACC>ATC	p.T255I	FAM188B_uc010kwe.2_Missense_Mutation_p.T226I	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	255											0						TTTGTCTGCACCCAACAGGAC	0.557			NA											15	101					0	0	0.003163	0	0
PDE1C	5137	broad.mit.edu	37	7	31917635	31917635	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:31917635G>A	uc003tcm.1	-	5	909	c.440C>T	c.(439-441)ACA>ATA	p.T147I	PDE1C_uc003tcn.1_Missense_Mutation_p.T147I|PDE1C_uc003tco.1_Missense_Mutation_p.T207I|PDE1C_uc003tcr.2_Missense_Mutation_p.T147I|PDE1C_uc003tcs.2_Missense_Mutation_p.T147I	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	147					activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CATGTTTGATGTCCGTCTATA	0.343			NA											20	25					0	0	0.002299	0	0
ABCA13	154664	broad.mit.edu	37	7	48259079	48259079	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:48259079G>T	uc003toq.2	+	4	441	c.416G>T	c.(415-417)TGG>TTG	p.W139L	ABCA13_uc003top.2_Missense_Mutation_p.W139L|ABCA13_uc010kyr.2_5'UTR	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	139					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						AAAAGACTTTGGGTAGAACGA	0.438			NA											73	91					1.38806e-43	2.51942e-43	0.00361	1	0
ABCA13	154664	broad.mit.edu	37	7	48315194	48315194	+	Silent	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:48315194A>T	uc003toq.2	+	17	5956	c.5931A>T	c.(5929-5931)CTA>CTT	p.L1977L	ABCA13_uc010kyr.2_Silent_p.L1480L	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1977					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTGACAAACTAAGTAGTTTAA	0.299			NA											14	17					0	0	0.001855	0	0
GRM3	2913	broad.mit.edu	37	7	86468393	86468393	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:86468393G>C	uc003uid.2	+	4	2662	c.1563G>C	c.(1561-1563)ATG>ATC	p.M521I	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.M393I|GRM3_uc010leh.2_Missense_Mutation_p.M113I	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	521	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TGAAGAATATGCAACCAGGGG	0.522	GBM(52;969 1098 3139 52280)		NA											54	82					0	0	0.00361	0	0
ABCB1	5243	broad.mit.edu	37	7	87160773	87160773	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:87160773G>T	uc003uiz.1	-	22	2940	c.2522C>A	c.(2521-2523)GCA>GAA	p.A841E	ABCB1_uc011khc.1_Missense_Mutation_p.A777E	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	841	Helical; (Potential).|ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	CCCAAGATTTGCTATATTCTG	0.348			NA											33	40					1.42033e-22	2.43617e-22	0.004289	1	0
ZNF804B	219578	broad.mit.edu	37	7	88964048	88964048	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:88964048C>T	uc011khi.1	+	4	2290	c.1752C>T	c.(1750-1752)CTC>CTT	p.L584L		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	584						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			CTCTTTACCTCAACACATCTC	0.378			NA								HNSCC(36;0.09)			7	39					0	0	0.001984	0	0
ZNF789	285989	broad.mit.edu	37	7	99084416	99084416	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:99084416C>T	uc003uqq.1	+	5	802	c.583C>T	c.(583-585)CTC>TTC	p.L195F	ZNF789_uc010lfw.1_Missense_Mutation_p.L100F|ZNF789_uc003uqr.1_Missense_Mutation_p.L137F	NM_213603	NP_998768	Q5FWF6	ZN789_HUMAN	zinc finger protein 789 isoform 1	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TGAGCGAATTCTCACAAGAGC	0.413			NA											32	45					0	0	0.001786	0	0
CUX1	1523	broad.mit.edu	37	7	101747651	101747651	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:101747651G>A	uc003uyx.3	+	6	480	c.442G>A	c.(442-444)GAA>AAA	p.E148K	CUX1_uc003uys.3_Missense_Mutation_p.E159K|CUX1_uc003uyt.2_Missense_Mutation_p.E159K|CUX1_uc011kkn.1_Missense_Mutation_p.E122K|CUX1_uc003uyw.2_Missense_Mutation_p.E113K|CUX1_uc003uyv.2_Missense_Mutation_p.E143K|CUX1_uc003uyu.2_Missense_Mutation_p.E159K	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	148	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GAAAATCCGAGAATATGAACA	0.388			NA											19	135					0	0	0.007413	0	0
SH2B2	10603	broad.mit.edu	37	7	101957803	101957803	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:101957803C>T	uc011kko.1	+	5	1510	c.1465C>T	c.(1465-1467)CAA>TAA	p.Q489*		NM_020979	NP_066189	O14492	SH2B2_HUMAN	SH2B adaptor protein 2	446	SH2.				blood coagulation|insulin receptor signaling pathway|intracellular signal transduction	cytosol|plasma membrane	JAK pathway signal transduction adaptor activity|SH3/SH2 adaptor activity|signal transducer activity				0						CGTGATCCGCCAAAGTGAGAC	0.647			NA											13	20					0	0	0.00245	0	0
RELN	5649	broad.mit.edu	37	7	103293132	103293132	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:103293132C>T	uc003vca.2	-	14	1789	c.1629G>A	c.(1627-1629)AAG>AAA	p.K543K	RELN_uc010liz.2_Silent_p.K543K	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	543					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CTTGATGGTTCTTTTGCCTGA	0.418	NSCLC(146;835 1944 15585 22231 52158)		NA											6	106					0	0	0.001984	0	0
MDFIC	29969	broad.mit.edu	37	7	114582368	114582368	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:114582368C>G	uc003vhf.2	+	3	723	c.460C>G	c.(460-462)CAA>GAA	p.Q154E		NM_199072	NP_951038	Q9P1T7	MDFIC_HUMAN	MyoD family inhibitor domain containing protein	45					activation of JUN kinase activity|interspecies interaction between organisms|negative regulation of protein import into nucleus|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|regulation of Wnt receptor signaling pathway|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleolus|nucleolus|nucleus	cyclin binding|Tat protein binding			ovary(1)	1						AGATATAACTCAAGCTACCAA	0.294			NA											7	25					0	0	0.001984	0	0
CPA1	1357	broad.mit.edu	37	7	130021969	130021969	+	Silent	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:130021969G>T	uc003vpx.2	+	4	474	c.402G>T	c.(400-402)CTG>CTT	p.L134L	CPA1_uc011kpf.1_Silent_p.L46L|CPA1_uc003vpw.2_Intron	NM_001868	NP_001859	P15085	CBPA1_HUMAN	carboxypeptidase A1 precursor	134					proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					TCCTGGACCTGCTGGTGGCGG	0.542			NA									OREG0018314	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	26	42					1.5548e-18	2.63273e-18	0.005443	1	0
CNTNAP2	26047	broad.mit.edu	37	7	146825926	146825926	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:146825926G>T	uc003weu.1	+	7	1597	c.1081G>T	c.(1081-1083)GTG>TTG	p.V361L		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	361	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GCCCTCAAATGTGGTAAGGAT	0.343			NA								HNSCC(39;0.1)			58	72					2.34445e-45	4.29951e-45	0.00361	1	0
ABP1	26	broad.mit.edu	37	7	150553968	150553968	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:150553968C>T	uc003why.1	+	3	4628	c.410C>T	c.(409-411)TCC>TTC	p.S137F	ABP1_uc003whz.1_Missense_Mutation_p.S137F|ABP1_uc003wia.1_Missense_Mutation_p.S137F	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	137					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TACCAGTCCTCCTGGGCATCG	0.617	Pancreas(195;1227 3054 24912 28503)		NA											13	77					0	0	0.001855	0	0
MLL3	58508	broad.mit.edu	37	7	151849853	151849853	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:151849853G>A	uc003wla.2	-	49	12682	c.12463C>T	c.(12463-12465)CCC>TCC	p.P4155S	MLL3_uc003wkz.2_Missense_Mutation_p.P3273S|MLL3_uc003wkx.2_Missense_Mutation_p.P313S|MLL3_uc003wky.2_Missense_Mutation_p.P1719S	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4155					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ACTAATCTGGGAGGGTTTGCA	0.502	Colon(68;14 1149 1884 27689 34759)		NA	N		medulloblastoma								11	110					0	0	0.000978	0	0
LMBR1	64327	broad.mit.edu	37	7	156619369	156619369	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr7:156619369G>C	uc003wmw.3	-	4	464	c.249C>G	c.(247-249)ATC>ATG	p.I83M	LMBR1_uc003wmx.3_Translation_Start_Site|LMBR1_uc010lqn.2_Missense_Mutation_p.I83M|LMBR1_uc011kvx.1_Missense_Mutation_p.I62M|LMBR1_uc010lqo.2_RNA	NM_022458	NP_071903	Q8WVP7	LMBR1_HUMAN	limb region 1 protein	83	Helical; (Potential).					integral to membrane	receptor activity				0	Ovarian(565;0.218)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.00231)	UCEC - Uterine corpus endometrioid carcinoma (81;0.208)		TTTCATTGCTGATGATTGAGA	0.408			NA											5	31					0	0	0.001168	0	0
DLGAP2	9228	broad.mit.edu	37	8	1626417	1626417	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:1626417G>T	uc003wpl.2	+	9	2183	c.2086G>T	c.(2086-2088)GCC>TCC	p.A696S	DLGAP2_uc003wpm.2_Missense_Mutation_p.A682S	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	775					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		CGTCACGGCCGCCGTCCAAGC	0.572			NA											26	36					1.5548e-18	2.63273e-18	0.005443	1	0
CSMD1	64478	broad.mit.edu	37	8	2807771	2807771	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:2807771G>C	uc011kwk.1	-	67	10689	c.10299C>G	c.(10297-10299)AAC>AAG	p.N3433K	CSMD1_uc011kwj.1_Missense_Mutation_p.N2747K|CSMD1_uc010lrg.2_Missense_Mutation_p.N1324K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3433	Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CTAGTCCCCAGTTGTCATTTT	0.433			NA											67	91					0	0	0.00361	0	0
CSMD1	64478	broad.mit.edu	37	8	3047486	3047486	+	Missense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:3047486C>G	uc011kwk.1	-	34	5739	c.5349G>C	c.(5347-5349)CAG>CAC	p.Q1783H	CSMD1_uc011kwj.1_Missense_Mutation_p.Q1175H|CSMD1_uc003wqe.2_Missense_Mutation_p.Q939H|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1783	Sushi 10.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TGGGCACGGACTGGCAGTGGA	0.612			NA											9	4					0	0	0.000978	0	0
MSR1	4481	broad.mit.edu	37	8	16035465	16035465	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:16035465C>T	uc003wwz.2	-	2	231	c.33G>A	c.(31-33)CAG>CAA	p.Q11Q	MSR1_uc010lsu.2_Silent_p.Q29Q|MSR1_uc003wxa.2_Silent_p.Q11Q|MSR1_uc003wxb.2_Silent_p.Q11Q|MSR1_uc011kxz.1_5'UTR	NM_138715	NP_619729	P21757	MSRE_HUMAN	macrophage scavenger receptor 1 isoform type 1	11	Cytoplasmic (Potential).				cholesterol transport|plasma lipoprotein particle clearance|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis	collagen|integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|protein binding|scavenger receptor activity			ovary(1)	1				Colorectal(111;0.00475)|COAD - Colon adenocarcinoma(73;0.0164)		CAGTGTCCTCCTGTTGATTGT	0.433			NA											13	31					0	0	0.004007	0	0
FGL1	2267	broad.mit.edu	37	8	17731590	17731590	+	Missense_Mutation	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:17731590A>G	uc003wxx.2	-	6	764	c.440T>C	c.(439-441)TTT>TCT	p.F147S	FGL1_uc003wxy.2_Missense_Mutation_p.F147S|FGL1_uc003wxz.2_Missense_Mutation_p.F147S|FGL1_uc003wya.2_Missense_Mutation_p.F147S|FGL1_uc003wyb.2_Missense_Mutation_p.F147S|FGL1_uc003wyc.2_Missense_Mutation_p.F147S|FGL1_uc003wyd.2_RNA|FGL1_uc003wye.2_Missense_Mutation_p.F197S|FGL1_uc003wyf.2_Missense_Mutation_p.F117S	NM_201553	NP_963847	Q08830	FGL1_HUMAN	fibrinogen-like 1 precursor	147	Fibrinogen C-terminal.				signal transduction	fibrinogen complex	receptor binding				0				Colorectal(111;0.0573)|COAD - Colon adenocarcinoma(73;0.215)		TTTTTGGACAAAATTTCCAAA	0.368			NA											23	31					0	0	0.003954	0	0
POTEA	340441	broad.mit.edu	37	8	43147734	43147734	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:43147734G>T	uc003xpz.1	+	1	150	c.107G>T	c.(106-108)AGG>ATG	p.R36M	POTEA_uc003xqa.1_Missense_Mutation_p.R36M	NM_001005365	NP_001005365	Q6S8J7	POTEA_HUMAN	POTE ankyrin domain family, member A isoform 2	36										ovary(1)	1						CCCTGCTGCAGGGGAAGCGGC	0.592			NA											39	4					1.69901e-12	2.74535e-12	0.005524	1	0
OPRK1	4986	broad.mit.edu	37	8	54163445	54163445	+	Silent	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:54163445G>C	uc003xrh.1	-	1	528	c.153C>G	c.(151-153)CCC>CCG	p.P51P	OPRK1_uc003xri.1_Silent_p.P51P|OPRK1_uc010lyc.1_5'UTR	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	51	Extracellular (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	AGATGTGCGCGGGCTCCAGCT	0.687			NA											14	11					0	0	0.00499	0	0
CHD7	55636	broad.mit.edu	37	8	61655605	61655605	+	Silent	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:61655605A>T	uc003xue.2	+	2	2091	c.1614A>T	c.(1612-1614)GCA>GCT	p.A538A		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	538	Pro-rich.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			AGCCTTGGGCACAGCTCCACC	0.567			NA											8	22					0	0	0.004482	0	0
CSPP1	79848	broad.mit.edu	37	8	68066321	68066321	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:68066321G>A	uc003xxi.2	+	19	2312	c.2281G>A	c.(2281-2283)GAA>AAA	p.E761K	CSPP1_uc003xxg.1_Missense_Mutation_p.E753K|CSPP1_uc003xxh.1_RNA|CSPP1_uc003xxj.2_Missense_Mutation_p.E726K|CSPP1_uc003xxk.2_Missense_Mutation_p.E381K	NM_001077204	NP_001070672	Q1MSJ5	CSPP1_HUMAN	centrosome spindle pole associated protein 1	761						centrosome|microtubule|spindle				ovary(3)|breast(2)	5	Breast(64;0.214)	Lung NSC(129;0.0908)|all_lung(136;0.152)	Epithelial(68;0.00145)|OV - Ovarian serous cystadenocarcinoma(28;0.00589)|all cancers(69;0.0069)|BRCA - Breast invasive adenocarcinoma(89;0.153)			GCCTCCAACTGAACTTCAGAT	0.338			NA											21	20					0	0	0.00278	0	0
RIMS2	9699	broad.mit.edu	37	8	104831791	104831791	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:104831791G>T	uc003ylw.2	+	1	376	c.56G>T	c.(55-57)GGG>GTG	p.G19V	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylq.2_Missense_Mutation_p.G19V|RIMS2_uc003ylr.2_Missense_Mutation_p.G19V	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CATTTTCATGGGGTTTTTTCA	0.348			NA								HNSCC(12;0.0054)			17	34					1.15088e-07	1.76801e-07	0.004007	1	0
CSMD3	114788	broad.mit.edu	37	8	113249457	113249457	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:113249457G>T	uc003ynu.2	-	67	10748	c.10589C>A	c.(10588-10590)GCA>GAA	p.A3530E	CSMD3_uc003yns.2_Missense_Mutation_p.A2732E|CSMD3_uc003ynt.2_Missense_Mutation_p.A3490E|CSMD3_uc011lhx.1_Missense_Mutation_p.A3361E	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3530	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCTCAGTGTTGCGTTAACTCT	0.363			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			59	66					4.83814e-26	8.51898e-26	0.00361	1	0
TRPS1	7227	broad.mit.edu	37	8	116632277	116632277	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:116632277C>T	uc003ynz.2	-	2	468	c.9G>A	c.(7-9)CGG>CGA	p.R3R	TRPS1_uc011lhy.1_Silent_p.R7R|TRPS1_uc003yny.2_Silent_p.R16R|TRPS1_uc010mcy.2_Silent_p.R3R	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	3					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			GGTTCTTTTTCCGGACCATAT	0.413			NA							Langer-Giedion_syndrome				4	85					0	0	0.000248	0	0
DSCC1	79075	broad.mit.edu	37	8	120854054	120854054	+	Missense_Mutation	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:120854054T>C	uc003yov.2	-	7	1039	c.904A>G	c.(904-906)ACT>GCT	p.T302A		NM_024094	NP_076999	Q9BVC3	DCC1_HUMAN	defective in sister chromatid cohesion 1	302					DNA replication|maintenance of mitotic sister chromatid cohesion|post-translational protein acetylation|regulation of DNA replication	chromatin|chromosome, centromeric region|nucleoplasm	DNA binding|protein binding			pancreas(1)	1	Lung NSC(37;9.35e-07)|Ovarian(258;0.011)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			TCAAGACTAGTTACCATTCCT	0.408			NA											17	11					0	0	0.001523	0	0
MTBP	27085	broad.mit.edu	37	8	121531029	121531029	+	Missense_Mutation	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:121531029T>A	uc003ypc.1	+	20	2627	c.2582T>A	c.(2581-2583)CTC>CAC	p.L861H		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	861	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			AGCCAGCGTCTCTTTGAAATC	0.353			NA											24	18					0	0	0.003954	0	0
BAI1	575	broad.mit.edu	37	8	143607977	143607977	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:143607977G>A	uc003ywm.2	+	23	3570	c.3387G>A	c.(3385-3387)AAG>AAA	p.K1129K		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	1129	Cytoplasmic (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					AGAAGCTGAAGGAGCGGGCAG	0.642			NA											6	8					0	0	0.00308	0	0
SCRIB	23513	broad.mit.edu	37	8	144890795	144890795	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:144890795G>A	uc003yzp.1	-	15	2106	c.2099C>T	c.(2098-2100)TCT>TTT	p.S700F	SCRIB_uc003yzo.1_Missense_Mutation_p.S700F	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	700	Potential.|Sufficient for targeting to adherens junction and to inhibit cell proliferation.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding	p.S700F(1)		urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			AGAGGGCGCAGAAACCACGGC	0.537	Pancreas(51;966 1133 10533 14576 29674)		NA											11	25					0	0	0.001855	0	0
GPAA1	8733	broad.mit.edu	37	8	145138897	145138897	+	Silent	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr8:145138897G>C	uc003zax.2	+	5	680	c.570G>C	c.(568-570)CTG>CTC	p.L190L	GPAA1_uc003zav.1_Silent_p.L68L|GPAA1_uc003zaw.1_Silent_p.L130L	NM_003801	NP_003792	O43292	GPAA1_HUMAN	glycosylphosphatidylinositol anchor attachment	190	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|protein complex assembly|protein retention in ER lumen	GPI-anchor transamidase complex	tubulin binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.02e-40)|all cancers(56;2.11e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ATGACCTTCTGGGCACTGAGG	0.552			NA											60	45					0	0	0.00361	0	0
C9orf68	55064	broad.mit.edu	37	9	4661977	4661977	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:4661977G>A	uc011llz.1	-	3	337	c.99C>T	c.(97-99)CTC>CTT	p.L33L	C9orf68_uc003zik.2_RNA|C9orf68_uc003zil.2_RNA|C9orf68_uc010mhj.2_Silent_p.L33L|C9orf68_uc011lly.1_5'UTR|C9orf68_uc003zim.2_Silent_p.L33L|PPAPDC2_uc003zin.2_5'Flank	NM_001039395	NP_001034484	B4DIY4	B4DIY4_HUMAN	hypothetical protein LOC55064	33											0		Breast(48;0.0456)		GBM - Glioblastoma multiforme(50;0.0222)		ACTGATTCATGAGGTAGACCC	0.443			NA									OREG0019084	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	16					0	0	0.000248	0	0
KIAA2026	158358	broad.mit.edu	37	9	5921793	5921793	+	Silent	SNP	A	A	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:5921793A>G	uc003zjq.3	-	8	4419	c.4203T>C	c.(4201-4203)ATT>ATC	p.I1401I	KIAA2026_uc010mht.2_Silent_p.I576I	NM_001017969	NP_001017969	Q5HYC2	K2026_HUMAN	hypothetical protein LOC158358	1401	Ser-rich.									ovary(2)|central_nervous_system(1)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00155)|Lung(218;0.124)		TACTAGAACAAATAGAGGACT	0.388			NA											3	94					0	0	0.004672	0	0
DENND4C	55667	broad.mit.edu	37	9	19296154	19296154	+	Nonsense_Mutation	SNP	C	C	G			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:19296154C>G	uc003znq.2	+	2	275	c.242C>G	c.(241-243)TCA>TGA	p.S81*	DENND4C_uc011lnc.1_5'UTR	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	81	DENN.					integral to membrane				ovary(1)|skin(1)	2						TGTTTACTCTCACACTGGCCT	0.378			NA											10	107					0	0	0.006214	0	0
ACO1	48	broad.mit.edu	37	9	32421015	32421015	+	Silent	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:32421015G>A	uc003zqw.3	+	8	1115	c.960G>A	c.(958-960)CTG>CTA	p.L320L	ACO1_uc010mjh.1_Silent_p.L154L|ACO1_uc003zqx.3_Silent_p.L320L|ACO1_uc003zqy.3_RNA	NM_002197	NP_002188	P21399	ACOC_HUMAN	aconitase 1	320					citrate metabolic process|response to iron(II) ion|tricarboxylic acid cycle	cytosol|endoplasmic reticulum|Golgi apparatus	4 iron, 4 sulfur cluster binding|aconitate hydratase activity|citrate hydro-lyase (cis-aconitate-forming) activity|iron-responsive element binding|isocitrate hydro-lyase (cis-aconitate-forming) activity|metal ion binding|protein binding				0			LUSC - Lung squamous cell carcinoma(29;0.00813)	GBM - Glioblastoma multiforme(74;3.94e-06)		TCACGTACCTGGTGCAAACAG	0.478			NA											21	180					0	0	0.001882	0	0
TAF1L	138474	broad.mit.edu	37	9	32633430	32633431	+	Missense_Mutation	DNP	TG	TG	AT			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:32633430_32633431TG>AT	uc003zrg.1	-	1	2237_2238	c.2147_2148CA>AT	c.(2146-2148)GCA>GAT	p.A716D	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	716					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTATCTTGGTTGCCATGCCAAC	0.416			NA											42	75					0	0	0.004672	0	0
RUSC2	9853	broad.mit.edu	37	9	35548239	35548239	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:35548239C>T	uc003zww.2	+	2	1976	c.1721C>T	c.(1720-1722)TCA>TTA	p.S574L	RUSC2_uc010mkq.2_Intron|RUSC2_uc003zwx.3_Missense_Mutation_p.S574L	NM_014806	NP_055621	Q8N2Y8	RUSC2_HUMAN	RUN and SH3 domain containing 2	574						cytosol				ovary(1)	1			Lung(28;0.000837)|LUSC - Lung squamous cell carcinoma(32;0.00109)|STAD - Stomach adenocarcinoma(86;0.194)			CAGGAGTTCTCACCCATCCAA	0.627			NA											10	25					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	9	69440254	69440254	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:69440254A>T	uc010mnx.1	+	3	507	c.338A>T	c.(337-339)GAG>GTG	p.E113V		NM_001098806	NP_001092276			coiled-coil domain containing 29												NA						TATAAATTGGAGCTAGATGAA	0.294			NA											18	9					0	0	0.001523	0	0
PCSK5	5125	broad.mit.edu	37	9	78749031	78749031	+	Silent	SNP	T	T	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:78749031T>C	uc004ajz.2	+	10	1753	c.1215T>C	c.(1213-1215)TTT>TTC	p.F405F	PCSK5_uc004ajy.2_Silent_p.F405F|PCSK5_uc004aka.2_Intron	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	405	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CCAGTCCGTTTCTGACCTGGA	0.418			NA											35	30					0	0	0.003755	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606679	84606680	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:84606679_84606680GG>TT	uc004amn.2	+	4	1341_1342	c.1294_1295GG>TT	c.(1294-1296)GGA>TTA	p.G432L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	432						integral to membrane					0						GAAAGAAAATGGAAAGAAACCA	0.411			NA											20	23					0	0	0.004672	0	0
NR4A3	8013	broad.mit.edu	37	9	102595602	102595602	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:102595602C>T	uc004baf.1	+	5	1849	c.1120C>T	c.(1120-1122)CTG>TTG	p.L374L	NR4A3_uc004bae.2_Silent_p.L374L|NR4A3_uc004bag.1_Silent_p.L374L|NR4A3_uc004bai.2_Silent_p.L385L	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	374					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				GAGAGGTCGTCTGCCTTCCAA	0.453			NA	T	EWSR1	extraskeletal myxoid chondrosarcoma								7	58					0	0	0.00308	0	0
RNF20	56254	broad.mit.edu	37	9	104307162	104307162	+	Nonsense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:104307162C>T	uc004bbn.2	+	6	832	c.742C>T	c.(742-744)CAG>TAG	p.Q248*		NM_019592	NP_062538	Q5VTR2	BRE1A_HUMAN	ring finger protein 20	248	Potential.				histone H2B ubiquitination|histone monoubiquitination|negative regulation of cell migration|positive regulation of transcription, DNA-dependent|protein polyubiquitination|ubiquitin-dependent protein catabolic process	nucleolus|ubiquitin ligase complex	histone binding|p53 binding|transcription coactivator activity|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(1)|breast(1)|kidney(1)|skin(1)	8		all_hematologic(171;8.99e-06)|Acute lymphoblastic leukemia(62;0.000365)|Myeloproliferative disorder(762;0.0255)		OV - Ovarian serous cystadenocarcinoma(323;2.88e-19)|STAD - Stomach adenocarcinoma(157;0.00311)		CACCATGTCTCAGGAGGTACT	0.468			NA											20	146					0	0	0.001882	0	0
DBC1	1620	broad.mit.edu	37	9	121929547	121929547	+	Missense_Mutation	SNP	C	C	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:121929547C>A	uc004bkc.2	-	8	2557	c.2101G>T	c.(2101-2103)GAC>TAC	p.D701Y		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	701					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TTAATTCGGTCCCGAATATCC	0.572			NA											30	70					3.80469e-20	6.48388e-20	0.001786	1	0
NR5A1	2516	broad.mit.edu	37	9	127245274	127245274	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:127245274G>C	uc004boo.1	-	7	1336	c.1149C>G	c.(1147-1149)TTC>TTG	p.F383L		NM_004959	NP_004950	Q13285	STF1_HUMAN	nuclear receptor subfamily 5, group A, member 1	383	Important for dimerization.				cell-cell signaling|male gonad development|positive regulation of transcription from RNA polymerase II promoter|primary sex determination|regulation of steroid biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	enzyme binding|phospholipid binding|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding				0						GGTTATTCAGGAACTTCAAAT	0.572			NA											5	111					0	0	0.000602	0	0
NAIF1	203245	broad.mit.edu	37	9	130825923	130825923	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:130825923C>T	uc004bta.2	-	2	987	c.768G>A	c.(766-768)ATG>ATA	p.M256I	NAIF1_uc004bsz.2_RNA	NM_197956	NP_931045	Q69YI7	NAIF1_HUMAN	nuclear apoptosis inducing factor 1	256					apoptosis|induction of apoptosis	nucleus					0						AGCGGCGGATCATCTGCAGTA	0.632			NA											12	72					0	0	0.000978	0	0
OBP2A	29991	broad.mit.edu	37	9	138439091	138439091	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:138439091G>A	uc004cgb.2	+	3	316	c.274G>A	c.(274-276)GCC>ACC	p.A92T	OBP2A_uc004cgc.2_Missense_Mutation_p.A92T|OBP2A_uc010nau.2_RNA|OBP2A_uc010nav.2_Missense_Mutation_p.R47H	NM_014582	NP_055397	Q9NY56	OBP2A_HUMAN	odorant binding protein 2A precursor	92					response to stimulus|sensory perception of smell	extracellular region	odorant binding|transporter activity				0				OV - Ovarian serous cystadenocarcinoma(145;3.39e-07)|Epithelial(140;1.11e-06)|all cancers(34;2.04e-05)		CAAATTCAGCGCCTGTGAGCC	0.642			NA											24	28					0	0	0.003954	0	0
PRKX	5613	broad.mit.edu	37	X	3533909	3533909	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:3533909G>C	uc010nde.2	-	7	1265	c.898C>G	c.(898-900)CAT>GAT	p.H300D		NM_005044	NP_005035	P51817	PRKX_HUMAN	protein kinase, X-linked	300	Protein kinase.						ATP binding|cAMP-dependent protein kinase activity			skin(2)|lung(1)	3		all_lung(23;0.000396)|Lung NSC(23;0.00123)				AACCACCGATGATGCTTCACA	0.473			NA											3	7					0	0	0.000248	0	0
TLR7	51284	broad.mit.edu	37	X	12905433	12905433	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:12905433G>A	uc004cvc.2	+	3	1945	c.1806G>A	c.(1804-1806)ATG>ATA	p.M602I		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	602	LRR 20.|Extracellular (Potential).				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	AGAAACTGATGATGAACGACA	0.383			NA											10	64					0	0	0.008291	0	0
BCOR	54880	broad.mit.edu	37	X	39933360	39933360	+	Silent	SNP	T	T	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:39933360T>A	uc004den.3	-	4	1531	c.1239A>T	c.(1237-1239)ACA>ACT	p.T413T	BCOR_uc004dep.3_Silent_p.T413T|BCOR_uc004deo.3_Silent_p.T413T|BCOR_uc004dem.3_Silent_p.T413T|BCOR_uc004deq.3_Silent_p.T413T	NM_001123385	NP_001116857	Q6W2J9	BCOR_HUMAN	BCL-6 interacting corepressor isoform c	413					heart development|histone H2A monoubiquitination|negative regulation of bone mineralization|negative regulation of histone H3-K36 methylation|negative regulation of histone H3-K4 methylation|negative regulation of tooth mineralization|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|palate development|specification of axis polarity|transcription, DNA-dependent	nucleus	heat shock protein binding|histone deacetylase binding|transcription corepressor activity|transcription factor binding|transcription regulatory region DNA binding			ovary(2)|kidney(1)|central_nervous_system(1)	4						CTTGAACCGCTGTCTTCCGGG	0.582			NA											19	2					0	0	0.008871	0	0
SYN1	6853	broad.mit.edu	37	X	47435805	47435805	+	Missense_Mutation	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:47435805C>T	uc004die.2	-	8	1110	c.981G>A	c.(979-981)ATG>ATA	p.M327I	SYN1_uc004did.2_Missense_Mutation_p.M327I	NM_006950	NP_008881	P17600	SYN1_HUMAN	synapsin I isoform Ia	327	C; actin-binding and synaptic-vesicle binding.					cell junction|Golgi apparatus	actin binding|ATP binding|ligase activity|transporter activity			ovary(1)	1						CTGACGTCCTCCTGGGGGACA	0.597			NA											6	25					0	0	0.001984	0	0
CLCN5	1184	broad.mit.edu	37	X	49853484	49853484	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:49853484G>A	uc004dos.1	+	9	1725	c.1477G>A	c.(1477-1479)GGA>AGA	p.G493R	CLCN5_uc004dor.1_Missense_Mutation_p.G563R|CLCN5_uc004doq.1_Missense_Mutation_p.G563R|CLCN5_uc004dot.1_Missense_Mutation_p.G493R	NM_000084	NP_000075	P51795	CLCN5_HUMAN	chloride channel 5 isoform b	493					excretion	apical part of cell|endosome membrane|Golgi membrane|integral to plasma membrane	antiporter activity|ATP binding			ovary(2)|lung(1)|central_nervous_system(1)	4	Ovarian(276;0.236)					GTGTAGTCAGGGAGCTGATTG	0.507			NA											9	71					0	0	0.004482	0	0
SMC1A	8243	broad.mit.edu	37	X	53409204	53409204	+	Missense_Mutation	SNP	G	G	A			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:53409204G>A	uc004dsg.2	-	22	3455	c.3386C>T	c.(3385-3387)TCA>TTA	p.S1129L	SMC1A_uc011moe.1_Missense_Mutation_p.S1107L	NM_006306	NP_006297	Q14683	SMC1A_HUMAN	structural maintenance of chromosomes 1A	1129	Ala/Asp-rich (DA-box).				cell cycle checkpoint|cell division|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic sister chromatid cohesion|mitotic spindle organization|negative regulation of DNA endoreduplication|nuclear mRNA splicing, via spliceosome|response to radiation|signal transduction in response to DNA damage	cohesin core heterodimer|condensed chromosome kinetochore|condensed nuclear chromosome|cytoplasm|meiotic cohesin complex|nucleoplasm	ATP binding|chromatin binding|microtubule motor activity|protein heterodimerization activity			ovary(5)|central_nervous_system(1)	6						CTCCCCGCCTGACAAGTTGTC	0.572			NA											10	20					0	0	0.000978	0	0
PAGE5	90737	broad.mit.edu	37	X	55249155	55249155	+	Missense_Mutation	SNP	G	G	C			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:55249155G>C	uc004duj.2	+	4	594	c.352G>C	c.(352-354)GAT>CAT	p.D118H	PAGE5_uc004duk.2_Missense_Mutation_p.D98H	NM_130467	NP_569734	Q96GU1	GGEE1_HUMAN	P antigen family, member 5 isoform 1	118											0						GCCCACTTTTGATCCCACTAA	0.423			NA											55	8					0	0	0.00361	0	0
PCDH19	57526	broad.mit.edu	37	X	99551623	99551623	+	Silent	SNP	C	C	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:99551623C>T	uc010nmz.2	-	6	4775	c.3099G>A	c.(3097-3099)CTG>CTA	p.L1033L	PCDH19_uc004efw.3_Silent_p.L985L|PCDH19_uc004efx.3_Silent_p.L986L	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1033	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TCTTGCCTTTCAGGGTAGGCC	0.582			NA											15	19					0	0	0.004007	0	0
NXF3	56000	broad.mit.edu	37	X	102339309	102339309	+	Missense_Mutation	SNP	G	G	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrX:102339309G>T	uc004eju.2	-	3	383	c.312C>A	c.(310-312)AAC>AAA	p.N104K	NXF3_uc010noi.1_5'Flank|NXF3_uc011mrw.1_Missense_Mutation_p.N104K|NXF3_uc011mrx.1_Missense_Mutation_p.N15K	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	104						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CATCCGGCATGTTCCCCTCCA	0.473			NA											52	4					4.25531e-23	7.39448e-23	0.00361	1	0
PCDH11Y	83259	broad.mit.edu	37	Y	4967015	4967015	+	Missense_Mutation	SNP	A	A	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chrY:4967015A>T	uc004fqo.2	+	2	2130	c.1396A>T	c.(1396-1398)ATT>TTT	p.I466F	PCDH11Y_uc010nwg.1_Missense_Mutation_p.I455F|PCDH11Y_uc004fql.1_Missense_Mutation_p.I455F|PCDH11Y_uc004fqm.1_Missense_Mutation_p.I455F|PCDH11Y_uc004fqn.1_Missense_Mutation_p.I466F|PCDH11Y_uc004fqp.1_Missense_Mutation_p.I237F	NM_032973	NP_116755	Q9BZA8	PC11Y_HUMAN	protocadherin 11 Y-linked isoform c	466	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0						AGAATATGCCATTAAATTACT	0.393			NA											2	0					0	0	0.004672	0	0
ESPNP	284729	broad.mit.edu	37	1	17034125	17034126	+	Frame_Shift_Ins	INS	-	-	AGCT	rs141324796	by1000genomes	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:17034125_17034126insAGCT	uc001azn.1	-	3	478_479	c.364_365insAGCT	c.(364-366)TGGfs	p.W122fs	ESPNP_uc010ocj.1_Frame_Shift_Ins_p.W52fs	NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						CAGCAGCAGCCAGCTGAGCACC	0.663			NA											7	12	---	---	---	---	NA	NA	NA	NA	NA
TPR	7175	broad.mit.edu	37	1	186313522	186313525	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	TCTT	TCTT	-	-	TCTT	TCTT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr1:186313522_186313525delTCTT	uc001grv.2	-	25	3696_3699	c.3399_3402delAAGA	c.(3397-3402)GAAAGAfs	p.E1133fs		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1133_1134	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		ACATTCTCTCTCTTTCCTCCCAAG	0.309			NA	T	NTRK1	papillary thyroid								32	261	---	---	---	---	NA	NA	NA	NA	NA
MYO3A	53904	broad.mit.edu	37	10	26377188	26377189	+	Frame_Shift_Ins	INS	-	-	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr10:26377188_26377189insT	uc001isn.2	+	15	1776_1777	c.1416_1417insT	c.(1414-1419)GCCTTTfs	p.A472fs	MYO3A_uc009xko.1_Frame_Shift_Ins_p.A472fs|MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Frame_Shift_Ins_p.A472fs	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	472_473	Myosin head-like.				protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TGGTAGAAGCCTTTGGCAATGC	0.307			NA											17	51	---	---	---	---	NA	NA	NA	NA	NA
INF2	64423	broad.mit.edu	37	14	105179550	105179550	+	Frame_Shift_Del	DEL	A	A	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr14:105179550delA	uc001ypb.2	+	19	2925	c.2782delA	c.(2782-2784)AAGfs	p.K928fs	INF2_uc010tyi.1_Frame_Shift_Del_p.K928fs|INF2_uc001ypc.2_Frame_Shift_Del_p.K928fs|INF2_uc010awz.1_RNA	NM_022489	NP_071934	Q27J81	INF2_HUMAN	inverted formin 2 isoform 1	928	Potential.|FH2.				actin cytoskeleton organization	endoplasmic reticulum|nucleus|perinuclear region of cytoplasm	actin binding|Rho GTPase binding				0		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00188)|OV - Ovarian serous cystadenocarcinoma(23;0.0191)|Epithelial(46;0.047)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.176)		GCAGGAGAACAAGGACCGGAA	0.706			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
ITGAL	3683	broad.mit.edu	37	16	30531249	30531251	+	In_Frame_Del	DEL	GCT	GCT	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	GCT	GCT	-	-	GCT	GCT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr16:30531249_30531251delGCT	uc002dyi.3	+	30	3476_3478	c.3300_3302delGCT	c.(3298-3303)GGGCTG>GGG	p.L1106del	ITGAL_uc002dyj.3_In_Frame_Del_p.L1022del|ITGAL_uc010vev.1_In_Frame_Del_p.L340del	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	1106	Helical; (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GCATCGGGGGGCTGCTGCTGCTG	0.601	NSCLC(110;1462 1641 3311 33990 49495)		NA											8	224	---	---	---	---	NA	NA	NA	NA	NA
ALOX12B	242	broad.mit.edu	37	17	7980316	7980316	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr17:7980316delG	uc002gjy.1	-	9	1528	c.1267delC	c.(1267-1269)CTCfs	p.L423fs	uc010cnq.1_5'Flank	NM_001139	NP_001130	O75342	LX12B_HUMAN	arachidonate 12-lipoxygenase, 12R type	423	Lipoxygenase.				epidermis development|leukotriene biosynthetic process		arachidonate 12-lipoxygenase activity|iron ion binding|lipoxygenase activity				0						ACCTTGTAGAGGGGGTGGCAC	0.627			NA								Multiple Myeloma(8;0.094)			8	13	---	---	---	---	NA	NA	NA	NA	NA
PPP5C	5536	broad.mit.edu	37	19	46850393	46850393	+	Frame_Shift_Del	DEL	C	C	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr19:46850393delC	uc002pem.2	+	1	100	c.40delC	c.(40-42)CCCfs	p.P14fs	PPP5C_uc010xya.1_5'UTR|PPP5C_uc002pen.2_Frame_Shift_Del_p.P14fs	NM_006247	NP_006238	P53041	PPP5_HUMAN	protein phosphatase 5, catalytic subunit	14					mitosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein dephosphorylation|transcription, DNA-dependent	Golgi apparatus|nucleus	metal ion binding|protein binding|protein serine/threonine phosphatase activity|signal transducer activity			lung(1)|pancreas(1)	2		Ovarian(192;0.0731)|all_neural(266;0.196)		OV - Ovarian serous cystadenocarcinoma(262;0.000196)|all cancers(93;0.00192)|GBM - Glioblastoma multiforme(486;0.0499)|Epithelial(262;0.0504)		GTGTGCTGAGCCCCCCCGGGA	0.687			NA									OREG0025570	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	1	---	---	---	---	NA	NA	NA	NA	NA
KCNH7	90134	broad.mit.edu	37	2	163361086	163361104	+	Frame_Shift_Del	DEL	ATCTTGTTAATGGTGCTGT	ATCTTGTTAATGGTGCTGT	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	ATCTTGTTAATGGTGCTGT	ATCTTGTTAATGGTGCTGT	-	-	ATCTTGTTAATGGTGCTGT	ATCTTGTTAATGGTGCTGT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr2:163361086_163361104delATCTTGTTAATGGTGCTGT	uc002uch.1	-	6	1189_1207	c.977_995delACAGCACCATTAACAAGAT	c.(976-996)TACAGCACCATTAACAAGATTfs	p.Y326fs	KCNH7_uc002uci.2_Frame_Shift_Del_p.Y319fs	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	326_332	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	GAGCTGTGGAATCTTGTTAATGGTGCTGTATTTGTTGAG	0.356	GBM(196;1492 2208 17507 24132 45496)		NA											17	34	---	---	---	---	NA	NA	NA	NA	NA
DNMT3B	1789	broad.mit.edu	37	20	31384616	31384617	+	Frame_Shift_Ins	INS	-	-	G	rs150851562	by1000genomes	TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr20:31384616_31384617insG	uc002wyc.2	+	13	1639_1640	c.1318_1319insG	c.(1318-1320)AGGfs	p.R440fs	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_Splice_Site|DNMT3B_uc002wyd.2_Frame_Shift_Ins_p.R420fs|DNMT3B_uc002wye.2_Frame_Shift_Ins_p.R420fs|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Frame_Shift_Ins_p.R378fs|DNMT3B_uc010zua.1_Frame_Shift_Ins_p.R344fs|DNMT3B_uc002wyf.2_Frame_Shift_Ins_p.R432fs|DNMT3B_uc002wyg.2_Frame_Shift_Ins_p.R139fs	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	440	GATA-type; atypical.|ADD.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GTCTTGTGGCAGGAAAAACCCC	0.559			NA											10	121	---	---	---	---	NA	NA	NA	NA	NA
TOP2B	7155	broad.mit.edu	37	3	25654107	25654107	+	Frame_Shift_Del	DEL	G	G	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr3:25654107delG	uc011awn.1	-	28	3728	c.3685delC	c.(3685-3687)CAGfs	p.Q1229fs	TOP2B_uc003cdj.2_Frame_Shift_Del_p.Q1224fs|TOP2B_uc011awm.1_Frame_Shift_Del_p.Q81fs|TOP2B_uc010hff.1_Frame_Shift_Del_p.Q90fs	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	1229					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TCTTCCAACTGGAGTTTCTTC	0.403			NA											17	148	---	---	---	---	NA	NA	NA	NA	NA
CNOT6L	246175	broad.mit.edu	37	4	78697452	78697453	+	Frame_Shift_Ins	INS	-	-	T			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr4:78697452_78697453insT	uc011ccd.1	-	2	230_231	c.99_100insA	c.(97-102)AAATCTfs	p.K33fs	CNOT6L_uc003hks.2_Frame_Shift_Ins_p.K33fs|CNOT6L_uc011cce.1_Frame_Shift_Ins_p.K33fs	NM_144571	NP_653172	Q96LI5	CNO6L_HUMAN	CCR4-NOT transcription complex, subunit 6-like	33_34					nuclear-transcribed mRNA poly(A) tail shortening	cytosol	exonuclease activity|protein binding			large_intestine(1)	1						GCCCAGTGAGATTTTTTCCCAT	0.371			NA											25	106	---	---	---	---	NA	NA	NA	NA	NA
ECM2	1842	broad.mit.edu	37	9	95272282	95272282	+	Frame_Shift_Del	DEL	C	C	-			TCGA-55-6972-01A-11D-1945-08	TCGA-55-6972-11A-01D-1945-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	46693a2b-5105-4770-a9e1-031dfedeb694	32fe5a7b-6f0d-4245-86b9-35055cbd71f7	g.chr9:95272282delC	uc004ash.2	-	6	1270	c.1205delG	c.(1204-1206)GGAfs	p.G402fs	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Frame_Shift_Del_p.G380fs|ECM2_uc011lty.1_Frame_Shift_Del_p.G402fs|ECM2_uc004asg.2_Frame_Shift_Del_p.G380fs	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	402	LRR 2.				cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						CAAATTATTTCCATCCATATT	0.318			NA											16	27	---	---	---	---	NA	NA	NA	NA	NA
