Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
RSC1A1	6248	broad.mit.edu	37	1	15987729	15987729	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:15987729G>A	uc010obn.1	+	1	1366	c.1366G>A	c.(1366-1368)GAT>AAT	p.D456N		NM_006511	NP_006502	Q92681	RSCA1_HUMAN	regulatory solute carrier protein, family 1,	456					negative regulation of transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transport	cell junction|Golgi apparatus|nucleus	ion channel inhibitor activity			ovary(1)	1		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00276)|Lung NSC(340;0.00566)|all_lung(284;0.00831)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.73e-07)|COAD - Colon adenocarcinoma(227;3.49e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000114)|KIRC - Kidney renal clear cell carcinoma(229;0.00244)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CCTGTCAACCGATAAGGAAGG	0.423			NA											10	21					0	0	0.006214	0	0
CSMD2	114784	broad.mit.edu	37	1	34204868	34204868	+	Silent	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:34204868G>A	uc001bxn.1	-	15	2150	c.2121C>T	c.(2119-2121)CTC>CTT	p.L707L	CSMD2_uc001bxm.1_Silent_p.L747L	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	707	Sushi 4.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCCCAGCTGGAGGCTGTCCC	0.572			NA											15	76					0	0	0.004007	0	0
NTNG1	22854	broad.mit.edu	37	1	108023306	108023306	+	Missense_Mutation	SNP	C	C	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:108023306C>G	uc001dvh.3	+	8	2182	c.1464C>G	c.(1462-1464)TGC>TGG	p.C488W	NTNG1_uc001dvf.3_Missense_Mutation_p.C429W|NTNG1_uc010out.1_Missense_Mutation_p.C454W|NTNG1_uc001dvc.3_Missense_Mutation_p.C387W|NTNG1_uc001dvi.2_Missense_Mutation_p.A56G|NTNG1_uc001dve.2_RNA|NTNG1_uc009wek.2_RNA|NTNG1_uc001dvg.2_RNA|NTNG1_uc009wem.2_Missense_Mutation_p.P51A	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	488					axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		GCTGCCTGTGCCCGGCCGCAT	0.682			NA											4	44					0	0	0.001168	0	0
VANGL1	81839	broad.mit.edu	37	1	116206601	116206601	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:116206601G>A	uc001efv.1	+	4	795	c.524G>A	c.(523-525)CGG>CAG	p.R175Q	VANGL1_uc009wgy.1_Missense_Mutation_p.R173Q|VANGL1_uc001efw.1_Missense_Mutation_p.R175Q	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	175	Cytoplasmic (Potential).		R -> Q.		multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		TTCCGCAAGCGGAGAGCTGAC	0.493			NA											26	147					0	0	0.004656	0	0
CD2	914	broad.mit.edu	37	1	117311354	117311354	+	Silent	SNP	A	A	C			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:117311354A>C	uc001egu.3	+	5	1034	c.1005A>C	c.(1003-1005)CCA>CCC	p.P335P		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	335	Cytoplasmic (Potential).|Pro-rich.				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	GAGTTCAGCCAAAACCTCCCC	0.517	NSCLC(14;263 555 26380 43512 51332)		NA											3	120					0	0	0.004672	0	0
KIF14	9928	broad.mit.edu	37	1	200559401	200559401	+	Splice_Site	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:200559401C>T	uc010ppk.1	-	17	3253	c.2814_splice	c.e17-1	p.Q938_splice	KIF14_uc010ppj.1_Splice_Site_p.Q447_splice	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14						microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						TGCTTCAAGTCTACAATGTAG	0.338			NA											6	82					0	0	0.001984	0	0
AHCTF1	25909	broad.mit.edu	37	1	247013024	247013024	+	Missense_Mutation	SNP	C	C	T	rs144318625	by1000genomes	TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr1:247013024C>T	uc001ibu.1	-	32	6291	c.6284G>A	c.(6283-6285)CGC>CAC	p.R2095H	AHCTF1_uc001ibv.1_Missense_Mutation_p.R2104H|AHCTF1_uc009xgs.1_Missense_Mutation_p.R956H|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	2095	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			CCTGCTGCTGCGGGATGATTT	0.458	Colon(145;197 1800 4745 15099 26333)		NA											5	59					0	0	0.000602	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	A	G	rs2257765		TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453			NA											3	46					0	0	0.004672	0	0
CYP2C9	1559	broad.mit.edu	37	10	96745823	96745823	+	Silent	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr10:96745823C>T	uc001kka.3	+	8	1208	c.1183C>T	c.(1183-1185)CTA>TTA	p.L395L	CYP2C9_uc009xut.2_Silent_p.L393L	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	395					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	GACTTCTGTGCTACATGACAA	0.348	Ovarian(54;1266 1406 16072 35076)		NA											5	97					0	0	0.001168	0	0
DMBT1	1755	broad.mit.edu	37	10	124399788	124399788	+	Missense_Mutation	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr10:124399788C>T	uc001lgk.1	+	52	6894	c.6788C>T	c.(6787-6789)TCA>TTA	p.S2263L	DMBT1_uc001lgl.1_Missense_Mutation_p.S2253L|DMBT1_uc001lgm.1_Missense_Mutation_p.S1635L|DMBT1_uc009xzz.1_Missense_Mutation_p.S2262L|DMBT1_uc010qtx.1_Missense_Mutation_p.S983L|DMBT1_uc009yab.1_Missense_Mutation_p.S966L|DMBT1_uc009yac.1_Missense_Mutation_p.S557L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2263	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TATACTTCCTCATCTTTCTTG	0.458	Ovarian(182;93 2026 18125 22222 38972)		NA											7	95					0	0	0.001984	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128851343	128851343	+	Missense_Mutation	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr11:128851343C>T	uc009zcp.2	-	16	1706	c.1706G>A	c.(1705-1707)GGC>GAC	p.G569D	ARHGAP32_uc009zcq.1_Missense_Mutation_p.G529D|ARHGAP32_uc009zco.2_5'UTR|ARHGAP32_uc001qez.2_Missense_Mutation_p.G220D	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	569					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						GCTGATTCTGCCGCTGAACAG	0.537			NA											4	86					0	0	0.000602	0	0
M6PR	4074	broad.mit.edu	37	12	9098883	9098883	+	Missense_Mutation	SNP	T	T	C			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr12:9098883T>C	uc001qvf.2	-	2	288	c.118A>G	c.(118-120)AAA>GAA	p.K40E		NM_002355	NP_002346	P20645	MPRD_HUMAN	cation-dependent mannose-6-phosphate receptor	40	Lumenal (Potential).				endosome to lysosome transport|receptor-mediated endocytosis	cell surface|endosome|integral to plasma membrane|lysosomal membrane	mannose binding|mannose transmembrane transporter activity|transmembrane receptor activity				0		Hepatocellular(102;0.137)		BRCA - Breast invasive adenocarcinoma(232;0.0146)		TCTGACTCTTTACCCTTTTCT	0.428			NA											4	92					0	0	0.009096	0	0
MMP19	4327	broad.mit.edu	37	12	56231671	56231671	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr12:56231671G>A	uc001sib.2	-	7	1137	c.1016C>T	c.(1015-1017)GCT>GTT	p.A339V	MMP19_uc001sia.2_Missense_Mutation_p.A53V|MMP19_uc001sid.2_RNA|MMP19_uc010spw.1_Silent_p.C292C	NM_002429	NP_002420	Q99542	MMP19_HUMAN	matrix metalloproteinase 19 isoform rasi-1	339	Hemopexin-like 2.				angiogenesis|cell differentiation|collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(1)	1						GTAGACAGCAGCATCCAGGTT	0.512			NA											20	75					0	0	0.008871	0	0
XPO4	64328	broad.mit.edu	37	13	21375083	21375083	+	Missense_Mutation	SNP	T	T	C			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr13:21375083T>C	uc001unq.3	-	14	1900	c.1864A>G	c.(1864-1866)ATA>GTA	p.I622V		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	622					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		TCTGCTCTTATTGCTCGAGAT	0.378			NA											4	80					0	0	0.001168	0	0
KTN1	3895	broad.mit.edu	37	14	56106693	56106693	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr14:56106693G>A	uc001xcb.2	+	15	2188	c.1886G>A	c.(1885-1887)CGT>CAT	p.R629H	KTN1_uc001xce.2_Missense_Mutation_p.R629H|KTN1_uc001xcc.2_Missense_Mutation_p.R629H|KTN1_uc001xcd.2_Missense_Mutation_p.R629H|KTN1_uc010trb.1_Missense_Mutation_p.R629H|KTN1_uc001xcf.1_Missense_Mutation_p.R629H	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	629	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						GAACGTGATCGTTTAACAAGT	0.299			NA	T	RET	papillary thryoid								19	129					0	0	0.002299	0	0
HERC2	8924	broad.mit.edu	37	15	28447338	28447338	+	Missense_Mutation	SNP	A	A	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr15:28447338A>G	uc001zbj.2	-	47	7644	c.7538T>C	c.(7537-7539)CTC>CCC	p.L2513P	HERC2_uc001zbk.1_Missense_Mutation_p.L48P	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	2513					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TGCATCTGAGAGCTCCGTGAC	0.587			NA											9	32					0	0	0.006214	0	0
TBC1D24	57465	broad.mit.edu	37	16	2550823	2550823	+	Missense_Mutation	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr16:2550823C>T	uc002cql.2	+	8	1684	c.1544C>T	c.(1543-1545)GCG>GTG	p.A515V	TBC1D24_uc002cqk.2_Missense_Mutation_p.A509V|TBC1D24_uc002cqm.2_Intron|TBC1D24_uc010bsm.2_RNA	NM_020705	NP_065756	Q9ULP9	TBC24_HUMAN	TBC1 domain family, member 24	515	TLD.		A -> V (in FIME; does not affect the interaction with ARF6; fails to induce neurite overgrowth when overexpressed in primary cortical neurons).		neuron projection development	cytoplasm	protein binding|Rab GTPase activator activity				0						GGCGGCCAGGCGCTCTACATC	0.642			NA									OREG0023552	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	23					0	0	0.000602	0	0
NOMO1	23420	broad.mit.edu	37	16	14988854	14988854	+	Splice_Site	SNP	G	G	C			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr16:14988854G>C	uc002dcv.2	+	30	3511	c.3445_splice	c.e30-1	p.R1149_splice		NM_014287	NP_055102	Q15155	NOMO1_HUMAN	nodal modulator 1 precursor							integral to membrane	carbohydrate binding|carboxypeptidase activity|protein binding			ovary(1)	1						GGTGTTTGCAGAGGAAGCTGC	0.562			NA											5	160					0	0	0.004482	0	0
CACNG3	10368	broad.mit.edu	37	16	24358138	24358138	+	Nonsense_Mutation	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr16:24358138C>T	uc002dmf.2	+	2	1495	c.295C>T	c.(295-297)CGA>TGA	p.R99*		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	99					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		ATATCTCCTGCGTAAGTTCCC	0.552			NA											8	48					0	0	0.004482	0	0
CACNG3	10368	broad.mit.edu	37	16	24366264	24366264	+	Missense_Mutation	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr16:24366264C>T	uc002dmf.2	+	3	1606	c.406C>T	c.(406-408)CTC>TTC	p.L136F		NM_006539	NP_006530	O60359	CCG3_HUMAN	voltage-dependent calcium channel gamma-3	136	Helical; (Potential).				regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane|voltage-gated calcium channel complex	voltage-gated calcium channel activity				0				GBM - Glioblastoma multiforme(48;0.0809)		CAACGTCATTCTCAGCGCGGG	0.587			NA											3	55					0	0	0.009096	0	0
CHD9	80205	broad.mit.edu	37	16	53341792	53341792	+	Missense_Mutation	SNP	A	A	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr16:53341792A>G	uc002ehb.2	+	32	7144	c.6980A>G	c.(6979-6981)CAT>CGT	p.H2327R	CHD9_uc002egy.2_Missense_Mutation_p.H2327R|CHD9_uc002ehc.2_Missense_Mutation_p.H2328R|CHD9_uc002ehf.2_Missense_Mutation_p.H1441R|CHD9_uc010cbw.2_Missense_Mutation_p.H393R|CHD9_uc002ehg.1_Missense_Mutation_p.H334R	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	2327					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AAAGAAGAACATGATCAGTCA	0.453			NA											4	26					0	0	0.004482	0	0
EFCAB3	146779	broad.mit.edu	37	17	60483983	60483983	+	Missense_Mutation	SNP	A	A	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr17:60483983A>T	uc002izu.1	+	7	709	c.631A>T	c.(631-633)ATT>TTT	p.I211F	EFCAB3_uc010wpc.1_Missense_Mutation_p.I263F	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	211							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			TGCTGCCCGGATTGCAATAAT	0.403			NA											3	25					0	0	0.004672	0	0
GH1	2688	broad.mit.edu	37	17	61995414	61995414	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr17:61995414G>A	uc002jdj.2	-	3	316	c.254C>T	c.(253-255)CCG>CTG	p.P85L	GH1_uc002jdi.2_Missense_Mutation_p.P70L|GH1_uc002jdk.2_Intron|GH1_uc002jdl.2_Intron|GH1_uc002jdm.2_Intron|GH1_uc002jdn.2_Missense_Mutation_p.P85L	NM_000515	NP_000506	P01241	SOMA_HUMAN	growth hormone 1 isoform 1	85					glucose transport|growth hormone receptor signaling pathway|JAK-STAT cascade|positive regulation of activation of JAK2 kinase activity|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of MAP kinase activity|positive regulation of multicellular organism growth|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|response to estradiol stimulus	extracellular space	growth factor activity|growth hormone receptor binding|hormone activity|metal ion binding|prolactin receptor binding				0						GGAGGGTGTCGGAATAGACTC	0.562			NA											27	160					0	0	0.004656	0	0
PLVAP	83483	broad.mit.edu	37	19	17476311	17476311	+	Silent	SNP	C	C	T	rs150210307		TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr19:17476311C>T	uc002ngk.1	-	3	1013	c.963G>A	c.(961-963)GCG>GCA	p.A321A		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	321	Potential.|Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						CCTTCTGTTTCGCCTCCTGAC	0.667			NA											10	23					0	0	0.006214	0	0
LRFN3	79414	broad.mit.edu	37	19	36430831	36430831	+	Silent	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr19:36430831C>T	uc002oco.2	+	2	956	c.504C>T	c.(502-504)CTC>CTT	p.L168L		NM_024509	NP_078785	Q9BTN0	LRFN3_HUMAN	leucine rich repeat and fibronectin type III	168	Extracellular (Potential).|LRR 5.				cell adhesion	axon|cell junction|dendrite|integral to membrane|postsynaptic membrane|presynaptic membrane					0	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			ACAACAACCTCGAGCAGCTGC	0.657			NA											33	69					0	0	0.012213	0	0
CTNNA2	1496	broad.mit.edu	37	2	80101465	80101465	+	Missense_Mutation	SNP	T	T	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr2:80101465T>G	uc010ysh.1	+	5	854	c.849T>G	c.(847-849)TTT>TTG	p.F283L	CTNNA2_uc010yse.1_Missense_Mutation_p.F283L|CTNNA2_uc010ysf.1_Missense_Mutation_p.F283L|CTNNA2_uc010ysg.1_Missense_Mutation_p.F283L	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	283					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						TTAATGAGTTTGACGTAAGCA	0.517			NA											11	55					0	0	0.001368	0	0
TTN	7273	broad.mit.edu	37	2	179399027	179399027	+	Silent	SNP	A	A	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr2:179399027A>G	uc010zfg.1	-	307	94835	c.94611T>C	c.(94609-94611)GTT>GTC	p.V31537V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V25232V|TTN_uc010zfi.1_Silent_p.V25165V|TTN_uc010zfj.1_Silent_p.V25040V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32464							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGCTGACACAACCATGTTGA	0.443			NA											3	102					0	0	0.004672	0	0
GTSE1	51512	broad.mit.edu	37	22	46704460	46704460	+	Missense_Mutation	SNP	G	G	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr22:46704460G>T	uc011aqy.1	+	4	594	c.382G>T	c.(382-384)GAC>TAC	p.D128Y	GTSE1_uc011aqz.1_5'UTR	NM_016426	NP_057510	Q9NYZ3	GTSE1_HUMAN	G-2 and S-phase expressed 1	109					DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G2 phase of mitotic cell cycle|microtubule-based process	cytoplasmic microtubule				ovary(1)	1		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00462)		CAAGCCTGAAGACCCTCGGAG	0.488	GBM(153;542 1915 12487 29016 50495)		NA											4	61					0.00024832	0.000297984	0.009096	1	0
SETD2	29072	broad.mit.edu	37	3	47162475	47162475	+	Nonsense_Mutation	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr3:47162475C>T	uc003cqs.2	-	3	3704	c.3651G>A	c.(3649-3651)TGG>TGA	p.W1217*	SETD2_uc003cqv.2_Nonsense_Mutation_p.W1206*	NM_014159	NP_054878	Q9BYW2	SETD2_HUMAN	SET domain containing 2	1217					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	DNA binding|histone-lysine N-methyltransferase activity|oxidoreductase activity|transition metal ion binding			kidney(24)|ovary(5)|skin(1)|central_nervous_system(1)|breast(1)	32		Acute lymphoblastic leukemia(5;0.0169)		BRCA - Breast invasive adenocarcinoma(193;0.000302)|KIRC - Kidney renal clear cell carcinoma(197;0.00732)|Kidney(197;0.00844)		TGGTCTGTTGCCAAGACTTAT	0.413			NA	N|F|S|Mis		clear cell renal carcinoma								22	69					0	0	0.00278	0	0
GYG1	2992	broad.mit.edu	37	3	148744703	148744703	+	Missense_Mutation	SNP	G	G	A	rs141679018		TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr3:148744703G>A	uc003ewn.2	+	8	1089	c.1036G>A	c.(1036-1038)GAC>AAC	p.D346N	GYG1_uc003ewo.2_Missense_Mutation_p.D329N|GYG1_uc003ewp.2_Silent_p.L255L	NM_004130	NP_004121	P46976	GLYG_HUMAN	glycogenin 1	346					glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	glycogenin glucosyltransferase activity|metal ion binding|protein binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			GAGGAAACTTGACACTTACCT	0.443			NA											13	55					0	0	0.004007	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185390422	185390422	+	Silent	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr3:185390422G>A	uc003fpo.2	-	10	1186	c.1107C>T	c.(1105-1107)AGC>AGT	p.S369S	IGF2BP2_uc010hyi.2_Silent_p.S312S|IGF2BP2_uc010hyj.2_Silent_p.S306S|IGF2BP2_uc010hyk.2_Silent_p.S233S|IGF2BP2_uc010hyl.2_Intron|IGF2BP2_uc003fpp.2_Intron|IGF2BP2_uc003fpq.2_Silent_p.S374S	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	369					anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			TGCCAAGTGCGCTGAGGTTCA	0.577			NA											4	30					0	0	0.009096	0	0
OSTalpha	200931	broad.mit.edu	37	3	195955002	195955002	+	Missense_Mutation	SNP	T	T	C			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr3:195955002T>C	uc003fwd.2	+	5	580	c.379T>C	c.(379-381)TTT>CTT	p.F127L	OSTalpha_uc010iac.1_Missense_Mutation_p.F11L|OSTalpha_uc003fwe.2_5'UTR	NM_152672	NP_689885	Q86UW1	OSTA_HUMAN	organic solute transporter alpha	127	Helical; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(1)	1	all_cancers(143;1.68e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;8.83e-25)|all cancers(36;8.38e-23)|OV - Ovarian serous cystadenocarcinoma(49;7.08e-19)|LUSC - Lung squamous cell carcinoma(58;7.51e-07)|Lung(62;1.06e-06)	GBM - Glioblastoma multiforme(46;0.00202)		TGCCGTGTGCTTTTACCTGCT	0.592			NA											4	221					0	0	0.009096	0	0
SH3TC1	54436	broad.mit.edu	37	4	8233746	8233746	+	Silent	SNP	C	C	T	rs141442802		TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr4:8233746C>T	uc003gkv.3	+	13	3095	c.2994C>T	c.(2992-2994)GCC>GCT	p.A998A	SH3TC1_uc003gkw.3_Silent_p.A922A|SH3TC1_uc003gkx.3_RNA|SH3TC1_uc003gky.2_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	998							binding			large_intestine(2)|pancreas(1)	3						TCTACAGCGCCGTCATGCCCA	0.637	NSCLC(145;2298 2623 35616 37297)		NA											28	58					0	0	0.00632	0	0
SMARCAD1	56916	broad.mit.edu	37	4	95200144	95200145	+	Missense_Mutation	DNP	AC	AC	GA			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	AC	AC	-	-	AC	AC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr4:95200144_95200145AC>GA	uc003htc.3	+	19	2616_2617	c.2361_2362AC>GA	c.(2359-2364)TTACAT>TTGAAT	p.H788N	SMARCAD1_uc003htb.3_Missense_Mutation_p.H790N|SMARCAD1_uc003htd.3_Missense_Mutation_p.H790N|SMARCAD1_uc010ila.2_Missense_Mutation_p.H653N|SMARCAD1_uc011cdw.1_Missense_Mutation_p.H358N	NM_020159	NP_064544	Q9H4L7	SMRCD_HUMAN	SWI/SNF-related, matrix-associated	788					chromatin modification|nucleotide metabolic process|positive regulation of transcription, DNA-dependent|protein homooligomerization|regulation of DNA recombination	nuclear matrix	ATP binding|DNA binding|helicase activity			skin(2)|ovary(1)|breast(1)	4				OV - Ovarian serous cystadenocarcinoma(123;4.33e-08)		ATCCTTTATTACATCGCCAATA	0.337			NA											4	26					0	0	0.004672	0	0
NFKB1	4790	broad.mit.edu	37	4	103517305	103517305	+	Missense_Mutation	SNP	C	C	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr4:103517305C>A	uc011ceq.1	+	14	1775	c.1308C>A	c.(1306-1308)GAC>GAA	p.D436E	NFKB1_uc011cep.1_Missense_Mutation_p.D437E|NFKB1_uc011cer.1_Missense_Mutation_p.D256E	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	436	Interaction with CFLAR.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	GAACCATGGACACTGAATCTA	0.353			NA											24	48					8.24728e-16	1.03091e-15	0.004656	1	0
INPP4B	8821	broad.mit.edu	37	4	143114338	143114338	+	Silent	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr4:143114338G>A	uc003iix.3	-	16	1678	c.1083C>T	c.(1081-1083)TAC>TAT	p.Y361Y	INPP4B_uc003iiw.3_Silent_p.Y361Y|INPP4B_uc011chm.1_RNA|INPP4B_uc011chn.1_Silent_p.Y176Y|INPP4B_uc011cho.1_RNA|INPP4B_uc011chp.1_Silent_p.Y232Y	NM_003866	NP_003857	O15327	INP4B_HUMAN	inositol polyphosphate-4-phosphatase, type II,	361					signal transduction		phosphatidylinositol-3,4-bisphosphate 4-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 4-phosphatase activity			ovary(1)|lung(1)	2	all_hematologic(180;0.158)					TGATGACATCGTAGAGAGCAT	0.428			NA											19	98					0	0	0.007413	0	0
MARCH1	55016	broad.mit.edu	37	4	164507069	164507069	+	Silent	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr4:164507069G>A	uc003iqs.1	-	6	1232	c.255C>T	c.(253-255)TGC>TGT	p.C85C	MARCH1_uc003iqr.1_Silent_p.C68C	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	85	RING-CH-type.				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CATCCCCTTCGCAGTGACAGA	0.527			NA											10	22					0	0	0.006214	0	0
TAP2	6891	broad.mit.edu	37	6	32803014	32803014	+	Missense_Mutation	SNP	T	T	C			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr6:32803014T>C	uc003occ.2	-	4	893	c.862A>G	c.(862-864)ATA>GTA	p.I288V	TAP2_uc011dqf.1_Missense_Mutation_p.I288V|TAP2_uc003ocb.1_Missense_Mutation_p.I288V|TAP2_uc003ocd.2_Missense_Mutation_p.I288V	NM_018833	NP_061313	Q03519	TAP2_HUMAN	transporter 2, ATP-binding cassette, sub-family	288	Lumenal (Potential).|ABC transmembrane type-1.				antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent|antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent|antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent|cytosol to ER transport|intracellular transport of viral proteins in host cell|peptide antigen transport|positive regulation of antigen processing and presentation of peptide antigen via MHC class I|positive regulation of T cell mediated cytotoxicity	nucleus|plasma membrane|TAP complex	ATP binding|MHC class I protein binding|oligopeptide-transporting ATPase activity|peptide antigen binding|peptide antigen-transporting ATPase activity|TAP1 binding|TAP2 binding|tapasin binding				0						CGAGGCGATATGCTGAGCATG	0.532			NA											12	29					0	0	0.010729	0	0
DAXX	1616	broad.mit.edu	37	6	33286535	33286535	+	Silent	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr6:33286535G>A	uc003oec.2	-	8	2412	c.2208C>T	c.(2206-2208)CTC>CTT	p.L736L	ZBTB22_uc003oeb.2_5'Flank|ZBTB22_uc010juu.2_5'Flank|DAXX_uc011drd.1_Silent_p.L661L|DAXX_uc011dre.1_Silent_p.L748L|DAXX_uc003oed.2_Silent_p.L736L	NM_001350	NP_001341	Q9UER7	DAXX_HUMAN	death-domain associated protein isoform a	736	Interaction with SPOP.				activation of JUN kinase activity|androgen receptor signaling pathway|apoptosis|induction of apoptosis via death domain receptors|interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|regulation of protein ubiquitination|transcription, DNA-dependent	chromosome, centromeric region|cytosol|nucleolus|PML body	androgen receptor binding|heat shock protein binding|p53 binding|protein homodimerization activity|protein N-terminus binding|receptor signaling protein activity|transcription factor binding|ubiquitin protein ligase binding			pancreas(18)|ovary(2)|skin(2)|prostate(1)	23						CAGAGTCTGAGAGCACGATGA	0.498			NA	Mis|F|N		Pancreatic neuroendocrine tumors								11	39					0	0	0.010729	0	0
GSTA2	2939	broad.mit.edu	37	6	52619840	52619840	+	Missense_Mutation	SNP	A	A	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr6:52619840A>G	uc003pay.2	-	4	323	c.173T>C	c.(172-174)GTT>GCT	p.V58A		NM_000846	NP_000837	P09210	GSTA2_HUMAN	glutathione S-transferase alpha 2	58	GST N-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Aminophenazone(DB01424)|Amsacrine(DB00276)|Busulfan(DB01008)|Chlorambucil(DB00291)|Chloroquine(DB00608)|Cinnarizine(DB00568)|Clofibrate(DB00636)|Ethacrynic acid(DB00903)|Glutathione(DB00143)|Mechlorethamine(DB00888)|Praziquantel(DB01058)|Vitamin E(DB00163)	ATCAATCTCAACCATTGGCAC	0.413			NA											3	97					0	0	0.009096	0	0
IBTK	25998	broad.mit.edu	37	6	82933844	82933844	+	Missense_Mutation	SNP	T	T	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr6:82933844T>G	uc003pjl.1	-	7	1411	c.884A>C	c.(883-885)CAT>CCT	p.H295P	IBTK_uc011dyv.1_Missense_Mutation_p.H295P|IBTK_uc011dyw.1_Missense_Mutation_p.H295P|IBTK_uc010kbi.1_5'UTR|IBTK_uc003pjm.2_Missense_Mutation_p.H295P	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	295	RCC1 3.				negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		TAGGACTGTATGAAACCTGCC	0.348			NA											4	64					0	0	0.000602	0	0
HECW1	23072	broad.mit.edu	37	7	43484503	43484503	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr7:43484503G>A	uc003tid.1	+	11	2337	c.1732G>A	c.(1732-1734)GCG>ACG	p.A578T	HECW1_uc011kbi.1_Missense_Mutation_p.A578T	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	578					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						GGGCGGCAGCGCGGCAGAGGA	0.701			NA											13	53					0	0	0.001855	0	0
TTC35	9694	broad.mit.edu	37	8	109498762	109498762	+	Missense_Mutation	SNP	G	G	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr8:109498762G>A	uc003ymw.1	+	11	864	c.829G>A	c.(829-831)GAA>AAA	p.E277K		NM_014673	NP_055488	Q15006	TTC35_HUMAN	tetratricopeptide repeat domain 35	277						endoplasmic reticulum|nucleus	binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(57;2.34e-10)			AAGTAAGAAGGAAACCAAATA	0.338			NA											7	21					0	0	0.004482	0	0
KLHL38	340359	broad.mit.edu	37	8	124664255	124664255	+	Silent	SNP	C	C	G			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr8:124664255C>G	uc003yqs.1	-	1	936	c.912G>C	c.(910-912)CTG>CTC	p.L304L		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	304	Kelch 1.										0						GTTTGCTGTACAGTAGGACGT	0.557			NA											3	76					0	0	0.004672	0	0
MAGEC3	139081	broad.mit.edu	37	X	140953388	140953388	+	Silent	SNP	C	C	T			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chrX:140953388C>T	uc011mwp.1	+	2	255	c.255C>T	c.(253-255)TTC>TTT	p.F85F		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	85										skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCACATACTTCAAGGTAAGGA	0.537			NA											6	71					0	0	0.001984	0	0
MYO7B	4648	broad.mit.edu	37	2	128367204	128367205	+	Frame_Shift_Ins	INS	-	-	A			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr2:128367204_128367205insA	uc002top.2	+	23	2991_2992	c.2938_2939insA	c.(2938-2940)TACfs	p.Y980fs		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	980						apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		TGCTGTGACTTACTTCCAGAAA	0.574			NA											28	80	---	---	---	---	NA	NA	NA	NA	NA
FEV	54738	broad.mit.edu	37	2	219848978	219848978	+	Frame_Shift_Del	DEL	C	C	-			TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr2:219848978delC	uc002vji.1	-	2	684	c.102delG	c.(100-102)GGGfs	p.G34fs		NM_017521	NP_059991	Q99581	FEV_HUMAN	FEV (ETS oncogene family)	34					cell differentiation|nervous system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity		EWSR1/FEV(10)|FUS/FEV(2)	bone(10)|soft_tissue(2)	12		Renal(207;0.0474)		Epithelial(149;9.77e-07)|all cancers(144;0.000167)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGCTCAGCGGCCCCCAGCTCG	0.652	NSCLC(198;941 2228 4658 24163 34665)		NA	T	EWSR1| FUS	Ewing sarcoma								2	4	---	---	---	---	NA	NA	NA	NA	NA
EGFR	1956	broad.mit.edu	37	7	55242465	55242479	+	In_Frame_Del	DEL	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	rs121913421		TCGA-75-7025-01A-12D-1945-08	TCGA-75-7025-10A-01D-1946-08	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	-	-	GGAATTAAGAGAAGC	GGAATTAAGAGAAGC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	17e3b2f9-1645-4315-9897-31eb2893345c	dcddb05c-169b-4149-ba9b-840f18bc135d	g.chr7:55242465_55242479delGGAATTAAGAGAAGC	uc003tqk.2	+	19	2481_2495	c.2235_2249delGGAATTAAGAGAAGC	c.(2233-2250)AAGGAATTAAGAGAAGCA>AAA	p.ELREA746del	EGFR_uc010kzg.1_In_Frame_Del_p.ELREA701del|EGFR_uc011kco.1_In_Frame_Del_p.ELREA693del	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	746_750	Cytoplasmic (Potential).|Protein kinase.		Missing (found in a lung cancer sample).		activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.E746_A750del(1613)|p.L747_P753>S(110)|p.L747_A750>P(74)|p.E746_S752>V(67)|p.L747_T751del(62)|p.E746_T751>A(30)|p.L747_S752del(28)|p.L747_T751>P(20)|p.E746_T751del(18)|p.L747_E749del(18)|p.K745_E749del(14)|p.E746_E749del(12)|p.E746_S752del(10)|p.L747_T751>S(7)|p.L747_P753>Q(7)|p.E746_P753>VS(6)|p.E746_A750>IP(5)|p.L747_T751>Q(5)|p.E746_T751>I(5)|p.E746_T751>V(5)|p.E746_S752>A(5)|p.E746_T751>IP(5)|p.E746_A750>QP(4)|p.E746V(4)|p.E746_S752>D(4)|p.K745_A750del(4)|p.L747S(3)|p.L747_S752>Q(3)|p.A750P(3)|p.E746_T751>VA(3)|p.E746_T751>VP(3)|p.E746_A750>RP(2)|p.E746_A750>S(2)|p.E746_S752>T(2)|p.A750_E758>P(2)|p.E746_T751>Q(2)|p.E746_T751>S(2)|p.E746_A750>DP(2)|p.E746_T751>L(2)|p.E746K(2)|p.E746_P753del(2)|p.E746_S752>I(2)|p.K745_E746insVPVAIK(2)|p.E746_A750>AP(2)|p.L747_K754>ST(1)|p.E746_A750>A(1)|p.E746_T751>P(1)|p.E746del(1)|p.A750_K754del(1)|p.L747_S752>QH(1)|p.L747P(1)|p.E746_A750>VP(1)|p.L747_K754>N(1)|p.L747_R748>FP(1)|p.K745_L747del(1)|p.L747_T751>A(1)|p.E746_P753>LS(1)|p.E746_P753>VQ(1)|p.E746_T751>LS(1)|p.A750_E758del(1)|p.E746_R748del(1)|p.I744_A750>VK(1)|p.E746I(1)|p.L747_K754del(1)|p.R748I(1)|p.E746_A750>KP(1)|p.E746_A750>EP(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TCGCTATCAAGGAATTAAGAGAAGCAACATCTCCG	0.479		E746_A750del(NCIH1650_LUNG)|E746K(HCC827_LUNG)|E746_A750del(PC14_LUNG)|L747_P753>Q(HCC4006_LUNG)	8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			19	54	---	---	---	---	NA	NA	NA	NA	NA
