Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
LOC440563	440563	broad.mit.edu	37	1	13183423	13183423	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:13183423T>C	uc010obg.1	-	1	545	c.450A>G	c.(448-450)GGA>GGG	p.G150G		NM_001136561	NP_001130033	B2RXH8	B2RXH8_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	150						ribonucleoprotein complex	nucleic acid binding|nucleotide binding				0						GTGAGGTGTTTCCTGATATGC	0.502			NA											34	313					0	0	0.003271	0	0
USP48	84196	broad.mit.edu	37	1	22078009	22078009	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:22078009T>C	uc001bfb.2	-	6	1003	c.765A>G	c.(763-765)GAA>GAG	p.E255E	USP48_uc010odq.1_Silent_p.E255E|USP48_uc009vqc.2_Silent_p.E255E|USP48_uc001bfc.2_Silent_p.E255E|USP48_uc001bfe.1_Silent_p.E255E|USP48_uc001bff.2_Silent_p.E255E	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	255					ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		CCTTCAAAAATTCCGAGATAC	0.368			NA											8	76					0	0	0.004482	0	0
ZSWIM5	57643	broad.mit.edu	37	1	45500130	45500130	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:45500130A>G	uc001cnd.2	-	11	2531	c.2303T>C	c.(2302-2304)TTA>TCA	p.L768S		NM_020883	NP_065934	Q9P217	ZSWM5_HUMAN	zinc finger, SWIM domain containing 5	768							zinc ion binding				0	Acute lymphoblastic leukemia(166;0.155)					TGAGTTTTCTAAAACAGGTAA	0.542			NA											25	48					0	0	0.005443	0	0
DMBX1	127343	broad.mit.edu	37	1	46976691	46976691	+	Nonsense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:46976691G>T	uc001cpx.2	+	3	448	c.433G>T	c.(433-435)GAG>TAG	p.E145*	DMBX1_uc001cpw.2_Nonsense_Mutation_p.E140*	NM_147192	NP_671725	Q8NFW5	DMBX1_HUMAN	diencephalon/mesencephalon homeobox 1 isoform b	145	Interacts with OXT2 and is required for repressor activity (By similarity).				brain development|developmental growth|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GAAGGAGGCTGAGGGCTCCCA	0.647			NA											19	29					2.89027e-11	4.66107e-11	0.002299	1	0
ACADM	34	broad.mit.edu	37	1	76205735	76205735	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:76205735G>T	uc001dgw.3	+	7	969	c.539G>T	c.(538-540)GGA>GTA	p.G180V	ACADM_uc010orc.1_3'UTR|ACADM_uc010ord.1_Missense_Mutation_p.G94V|ACADM_uc009wbp.2_Missense_Mutation_p.G184V|ACADM_uc009wbr.2_Missense_Mutation_p.G213V|ACADM_uc010ore.1_Missense_Mutation_p.G144V|ACADM_uc010orf.1_5'UTR|ACADM_uc001dgx.3_Missense_Mutation_p.G94V|ACADM_uc010org.1_Missense_Mutation_p.G50V	NM_000016	NP_000007	P11310	ACADM_HUMAN	medium-chain acyl-CoA dehydrogenase isoform a	180					carnitine biosynthetic process|carnitine metabolic process, CoA-linked|fatty acid beta-oxidation using acyl-CoA dehydrogenase|medium-chain fatty acid catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|identical protein binding|medium-chain-acyl-CoA dehydrogenase activity			breast(2)|ovary(1)|skin(1)	4						GAAAAGAAAGGAGATGAGTAT	0.328			NA											4	13					0.00024832	0.000318573	0.000248	1	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76877814	76877815	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:76877814_76877815CC>AA	uc001dhh.2	+	3	498_499	c.335_336CC>AA	c.(334-336)ACC>AAA	p.T112K	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.T112K|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.T47K	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	112	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						AATGCCCCCACCAAAGGTTATG	0.455			NA											24	47					0	0	0.004672	0	0
FAM73A	374986	broad.mit.edu	37	1	78269059	78269059	+	Nonsense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:78269059A>T	uc001dhx.2	+	4	510	c.478A>T	c.(478-480)AAA>TAA	p.K160*	FAM73A_uc010ork.1_Nonsense_Mutation_p.K160*|FAM73A_uc010orl.1_Nonsense_Mutation_p.K122*|FAM73A_uc001dhy.1_5'UTR	NM_198549	NP_940951	Q8NAN2	FA73A_HUMAN	hypothetical protein LOC374986	160						integral to membrane				ovary(1)	1				Colorectal(170;0.226)		ACTTTTCAGTAAATATTCAGG	0.299			NA											11	14					0	0	0.001368	0	0
RPF1	80135	broad.mit.edu	37	1	84956127	84956127	+	Silent	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:84956127T>A	uc001djv.3	+	5	633	c.588T>A	c.(586-588)ATT>ATA	p.I196I		NM_025065	NP_079341	Q9H9Y2	RPF1_HUMAN	RNA processing factor 1	196	Brix.				rRNA processing|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|rRNA binding				0						CAGACCTGATTGTTATTAATG	0.358			NA											17	33					0	0	0.008871	0	0
LPPR4	9890	broad.mit.edu	37	1	99771281	99771281	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:99771281G>A	uc001dse.2	+	7	1113	c.1007G>A	c.(1006-1008)AGT>AAT	p.S336N	LPPR4_uc010oue.1_Missense_Mutation_p.S278N	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	336							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		AGTGATGAGAGTATGTTTCAG	0.448			NA											11	96					0	0	0.001368	0	0
VCAM1	7412	broad.mit.edu	37	1	101188624	101188624	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:101188624G>A	uc001dti.2	+	3	509	c.389G>A	c.(388-390)GGG>GAG	p.G130E	VCAM1_uc001dtj.2_Missense_Mutation_p.G130E|VCAM1_uc010ouj.1_Missense_Mutation_p.G68E	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	130	Ig-like C2-type 2.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	CTGGAGGCTGGGAAGCCGATC	0.438			NA											8	25					0	0	0.00308	0	0
VAV3	10451	broad.mit.edu	37	1	108507383	108507383	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:108507383G>C	uc001dvk.1	-	1	163	c.109C>G	c.(109-111)CTC>GTC	p.L37V	VAV3_uc010ouw.1_Missense_Mutation_p.L37V|VAV3_uc001dvl.1_5'Flank|VAV3_uc010oux.1_Missense_Mutation_p.L37V	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	37	CH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CCATCGCGGAGGGTCTGCGCA	0.622			NA											10	35					0	0	0.008291	0	0
SLC16A1	6566	broad.mit.edu	37	1	113459922	113459922	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:113459922C>A	uc001ecx.2	-	4	1938	c.1106G>T	c.(1105-1107)TGG>TTG	p.W369L	SLC16A1_uc001ecy.2_Missense_Mutation_p.W369L|SLC16A1_uc001ecz.2_Missense_Mutation_p.W369L	NM_003051	NP_003042	P53985	MOT1_HUMAN	solute carrier family 16, member 1	369	Helical; (Potential).				blood coagulation|leukocyte migration|organic anion transport|pyruvate metabolic process	integral to membrane|membrane fraction|plasma membrane	mevalonate transmembrane transporter activity|protein binding|secondary active monocarboxylate transmembrane transporter activity|symporter activity			central_nervous_system(1)	1	Lung SC(450;0.246)	all_cancers(81;7.6e-08)|all_epithelial(167;3.82e-07)|all_lung(203;3.07e-05)|Lung NSC(69;5.51e-05)|Prostate(1639;0.00232)		Epithelial(280;7.31e-13)|all cancers(265;5.1e-10)|Kidney(133;5.29e-07)|KIRC - Kidney renal clear cell carcinoma(1967;8.63e-06)|OV - Ovarian serous cystadenocarcinoma(397;1.48e-05)|BRCA - Breast invasive adenocarcinoma(282;0.003)|LUSC - Lung squamous cell carcinoma(189;0.008)|Lung(183;0.00948)|Colorectal(144;0.0325)|COAD - Colon adenocarcinoma(174;0.0643)	Pyruvic acid(DB00119)	GGAGCTGAGCCACCCGAAGGC	0.488			NA											10	15					1.76689e-08	2.65324e-08	0.006214	1	0
TSHB	7252	broad.mit.edu	37	1	115576107	115576107	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:115576107A>G	uc001efs.1	+	2	192	c.124A>G	c.(124-126)ATC>GTC	p.I42V		NM_000549	NP_000540	P01222	TSHB_HUMAN	thyroid stimulating hormone, beta precursor	42					anatomical structure morphogenesis|cell-cell signaling|cellular nitrogen compound metabolic process|G-protein coupled receptor protein signaling pathway|hormone biosynthetic process|peptide hormone processing	extracellular region	hormone activity				0	Lung SC(450;0.211)	all_cancers(81;3.22e-07)|all_epithelial(167;1.4e-06)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		TTGCCTAACCATCAACACCAC	0.418			NA											12	65					0	0	0.001368	0	0
RPRD2	23248	broad.mit.edu	37	1	150444633	150444633	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:150444633C>G	uc009wlr.2	+	11	3410	c.3209C>G	c.(3208-3210)TCC>TGC	p.S1070C	RPRD2_uc010pcc.1_3'UTR|RPRD2_uc001eup.3_Missense_Mutation_p.S1044C	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	1070							protein binding			ovary(1)	1						GTCTCCTCCTCCTGCTTAGAC	0.532			NA											5	87					0	0	0.000602	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059651	152059651	+	Silent	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:152059651T>A	uc001ezo.1	-	3	572	c.507A>T	c.(505-507)CCA>CCT	p.P169P		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	169							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			ATGCTTCTCCTGGAAAGTTGT	0.443			NA											36	58					0	0	0.004878	0	0
FLG2	388698	broad.mit.edu	37	1	152327652	152327652	+	Silent	SNP	G	G	A	rs12737224		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:152327652G>A	uc001ezw.3	-	3	2683	c.2610C>T	c.(2608-2610)GGC>GGT	p.G870G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	870	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTTGTCCAAAGCCAGATGTCT	0.502			NA											69	435					0	0	0.00361	0	0
LCE2D	353141	broad.mit.edu	37	1	152636910	152636910	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:152636910G>A	uc001fag.2	+	2	384	c.329G>A	c.(328-330)TGC>TAC	p.C110Y		NM_178430	NP_848517	Q5TA82	LCE2D_HUMAN	late cornified envelope 2D	110	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGGGGCTGCTGCTGACCTGGG	0.587			NA											39	56					0	0	0.006999	0	0
OR10J5	127385	broad.mit.edu	37	1	159505512	159505512	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:159505512C>T	uc010piw.1	-	1	286	c.286G>A	c.(286-288)GGC>AGC	p.G96S		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	96	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					GTAGCACAGCCTGCCAAGGAG	0.463			NA											19	59					0	0	0.008871	0	0
NME7	29922	broad.mit.edu	37	1	169292473	169292473	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:169292473T>A	uc001gfu.2	-	3	398	c.160A>T	c.(160-162)AAC>TAC	p.N54Y	NME7_uc010plq.1_RNA|NME7_uc001gft.2_Missense_Mutation_p.N18Y|NME7_uc001gfv.1_Missense_Mutation_p.N54Y	NM_013330	NP_037462	Q9Y5B8	NDK7_HUMAN	nucleoside diphosphate kinase 7 isoform a	54	DM10.				CTP biosynthetic process|GTP biosynthetic process|UTP biosynthetic process	centrosome	ATP binding|metal ion binding|nucleoside diphosphate kinase activity			central_nervous_system(1)	1	all_hematologic(923;0.208)					AAGTGCAGGTTATCATATTTG	0.348			NA											20	164					0	0	0.00278	0	0
TNR	7143	broad.mit.edu	37	1	175355258	175355258	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:175355258C>G	uc001gkp.1	-	6	1768	c.1687G>C	c.(1687-1689)GCC>CCC	p.A563P	TNR_uc009wwu.1_Missense_Mutation_p.A563P	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	563	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GGCCGCAGGGCCTGCACTGAG	0.592			NA											34	66					0	0	0.002096	0	0
ASTN1	460	broad.mit.edu	37	1	176863850	176863850	+	Missense_Mutation	SNP	G	G	T	rs147140947	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:176863850G>T	uc001glc.2	-	17	3000	c.2788C>A	c.(2788-2790)CGC>AGC	p.R930S	ASTN1_uc001glb.1_Missense_Mutation_p.R930S|ASTN1_uc001gld.1_Missense_Mutation_p.R930S	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	938					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACTCCATGCGGACTCCAGCC	0.607			NA											20	94					2.41591e-17	4.42595e-17	0.004656	1	0
NPHS2	7827	broad.mit.edu	37	1	179521776	179521777	+	Missense_Mutation	DNP	CC	CC	AG			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:179521776_179521777CC>AG	uc001gmq.3	-	7	919_920	c.834_835GG>CT	c.(832-837)CTGGCT>CTCTCT	p.A279S	C1orf125_uc009wxg.2_Intron|C1orf125_uc001gmo.2_Intron|C1orf125_uc001gmp.2_Intron|C1orf125_uc009wxh.2_Intron|NPHS2_uc009wxi.2_Missense_Mutation_p.A211S|C1orf125_uc001gmr.2_RNA	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	279	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						GCCTCCACAGCCAGTGAGTGCT	0.525			NA											6	53					0	0	0.004672	0	0
CACNA1E	777	broad.mit.edu	37	1	181693670	181693670	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:181693670C>A	uc001gow.2	+	17	2304	c.2139C>A	c.(2137-2139)ACC>ACA	p.T713T	CACNA1E_uc009wxs.2_Silent_p.T620T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	713	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGGAACTGACCAAGGTAAGCA	0.463			NA											7	18					1.06961e-07	1.58538e-07	0.00308	1	0
CACNA1E	777	broad.mit.edu	37	1	181764047	181764047	+	Silent	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:181764047G>C	uc001gow.2	+	45	6111	c.5946G>C	c.(5944-5946)CGG>CGC	p.R1982R	CACNA1E_uc009wxs.2_Silent_p.R1870R|CACNA1E_uc009wxt.2_Silent_p.R1251R	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2025	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCACTATTCGGGATAAGCGTT	0.483			NA											23	30					0	0	0.002299	0	0
ASPM	259266	broad.mit.edu	37	1	197062214	197062214	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:197062214C>T	uc001gtu.2	-	21	9519	c.9262G>A	c.(9262-9264)GCA>ACA	p.A3088T	ASPM_uc001gtv.2_Missense_Mutation_p.A1503T|ASPM_uc001gtw.3_Missense_Mutation_p.A936T	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	3088	IQ 37.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						CGCACCAGTGCTTGTAGGATA	0.333			NA											27	27					0	0	0.008361	0	0
DENND1B	163486	broad.mit.edu	37	1	197522116	197522116	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:197522116G>T	uc001guf.3	-	16	1614	c.1276C>A	c.(1276-1278)CAA>AAA	p.Q426K	DENND1B_uc010ppe.1_Intron|DENND1B_uc010ppf.1_Intron|DENND1B_uc001gue.3_Missense_Mutation_p.Q396K	NM_144977	NP_659414	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 2	426						clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						AATTGTTATTGAGAAAATGGA	0.318			NA											5	35					0.000602214	0.000755655	0.000602	1	0
CACNA1S	779	broad.mit.edu	37	1	201028356	201028356	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:201028356G>T	uc001gvv.2	-	27	3713	c.3486C>A	c.(3484-3486)ACC>ACA	p.T1162T		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1162	IV.|Helical; Name=S2 of repeat IV; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCATCTCCAGGGTGAAGATGA	0.582			NA											27	40					1.17739e-12	1.97526e-12	0.005443	1	0
CACNA1S	779	broad.mit.edu	37	1	201046253	201046253	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:201046253T>A	uc001gvv.2	-	12	1849	c.1622A>T	c.(1621-1623)TAT>TTT	p.Y541F		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	541	II.|Helical; Name=S4 of repeat II; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGACGTCCAATATCTGAAGGA	0.592			NA											5	35					0	0	0.001168	0	0
NAV1	89796	broad.mit.edu	37	1	201749685	201749685	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:201749685G>A	uc001gwu.2	+	4	1710	c.1363G>A	c.(1363-1365)GTG>ATG	p.V455M	NAV1_uc001gwv.1_Translation_Start_Site|NAV1_uc001gww.1_Missense_Mutation_p.V64M|NAV1_uc001gwx.2_Missense_Mutation_p.V64M|NAV1_uc001gwy.1_5'Flank	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	455					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						CTCAACAATAGTGGTACGTGA	0.498			NA											21	65					0	0	0.00333	0	0
PIGR	5284	broad.mit.edu	37	1	207112529	207112529	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:207112529T>C	uc001hez.2	-	3	507	c.323A>G	c.(322-324)TAC>TGC	p.Y108C	PIGR_uc009xbz.2_Missense_Mutation_p.Y108C	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	108	Ig-like V-type 1.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCCACACTTGTAGCGCCCGGA	0.572			NA											3	61					0	0	0.004672	0	0
USH2A	7399	broad.mit.edu	37	1	216270486	216270486	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:216270486T>A	uc001hku.1	-	22	5084	c.4697A>T	c.(4696-4698)CAG>CTG	p.Q1566L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1566	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATACTCTTCCTGATTGCCAGG	0.353			NA								HNSCC(13;0.011)			6	43					0	0	0.001984	0	0
GPATCH2	55105	broad.mit.edu	37	1	217604634	217604634	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:217604634C>A	uc001hlf.1	-	10	1536	c.1440G>T	c.(1438-1440)TGG>TGT	p.W480C		NM_018040	NP_060510	Q9NW75	GPTC2_HUMAN	G patch domain containing 2	480	G-patch.					intracellular	nucleic acid binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0397)|all cancers(67;0.0744)|GBM - Glioblastoma multiforme(131;0.0872)		ACCCAGGCGTCCAGCCCATAT	0.463			NA											61	83					1.22119e-34	2.44238e-34	0.00361	1	0
HIST3H2A	92815	broad.mit.edu	37	1	228645213	228645213	+	Silent	SNP	G	G	C	rs142593528		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:228645213G>C	uc001hsy.2	-	1	348	c.306C>G	c.(304-306)ACC>ACG	p.T102T	HIST3H2BB_uc001hsz.2_5'Flank	NM_033445	NP_254280	Q7L7L0	H2A3_HUMAN	histone cluster 3, H2a	102					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(1)	1		Prostate(94;0.183)				CCTGCGCGATGGTCACGCGGC	0.612			NA											24	74					0	0	0.00278	0	0
RYR2	6262	broad.mit.edu	37	1	237754280	237754280	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:237754280G>A	uc001hyl.1	+	31	4268	c.4148G>A	c.(4147-4149)CGT>CAT	p.R1383H		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1383	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAGCCCTCTCGTCTGAAACAA	0.398			NA											10	26					0	0	0.008291	0	0
NLRP3	114548	broad.mit.edu	37	1	247611773	247611773	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:247611773T>C	uc001icr.2	+	11	3216	c.3078T>C	c.(3076-3078)CCT>CCC	p.P1026P	NLRP3_uc001ics.2_Silent_p.P969P|NLRP3_uc001icu.2_Silent_p.P1026P|NLRP3_uc001icw.2_Silent_p.P969P|NLRP3_uc001icv.2_Silent_p.P912P|NLRP3_uc010pyw.1_Silent_p.P1004P	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	1026					detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AAGAAAAGCCTGAGCTGACCG	0.502			NA											22	30					0	0	0.00278	0	0
OR2W3	343171	broad.mit.edu	37	1	248059177	248059177	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:248059177T>A	uc001idp.1	+	3	558	c.289T>A	c.(289-291)TGT>AGT	p.C97S	OR2W3_uc010pzb.1_Missense_Mutation_p.C97S	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CTACATGGGCTGTGCCATCCA	0.572			NA											30	78					0	0	0.002445	0	0
OR2L3	391192	broad.mit.edu	37	1	248224272	248224272	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:248224272G>T	uc001idx.1	+	1	289	c.289G>T	c.(289-291)GGG>TGG	p.G97W	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CACTGGGTGTGGGATTCAGAG	0.433			NA											71	168					1.05635e-38	2.13131e-38	0.00361	1	0
OR2L13	284521	broad.mit.edu	37	1	248263215	248263215	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:248263215G>T	uc001ids.2	+	3	875	c.538G>T	c.(538-540)GTC>TTC	p.V180F		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CTTCTGCGATGTCCCAGCCAT	0.458			NA											58	125					8.4772e-36	1.70288e-35	0.00361	1	0
OR2T4	127074	broad.mit.edu	37	1	248524987	248524987	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:248524987G>T	uc001ieh.1	+	1	105	c.105G>T	c.(103-105)ATG>ATT	p.M35I		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	35	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TCACCTGGATGGCCAACCACA	0.478			NA											32	51					4.74835e-14	8.23768e-14	0.002096	1	0
OR2T1	26696	broad.mit.edu	37	1	248569881	248569881	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr1:248569881G>A	uc010pzm.1	+	1	586	c.586G>A	c.(586-588)GCA>ACA	p.A196T		NM_030904	NP_112166	O43869	OR2T1_HUMAN	olfactory receptor, family 2, subfamily T,	196	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATGATTATAGCAGGTTCCTG	0.542			NA											19	62					0	0	0.007413	0	0
AKR1C1	1645	broad.mit.edu	37	10	5014794	5014794	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:5014794G>T	uc001iho.2	+	12	1540	c.699G>T	c.(697-699)CCG>CCT	p.P233P	AKR1E2_uc001ihl.1_Intron|AKR1C2_uc010qan.1_Intron|AKR1C3_uc001ihr.2_Intron|AKR1C1_uc001ihq.2_Silent_p.P233P	NM_001353	NP_001344	Q04828	AK1C1_HUMAN	aldo-keto reductase family 1, member C1	233	NADP (By similarity).				bile acid and bile salt transport|bile acid metabolic process|cholesterol homeostasis|intestinal cholesterol absorption|protein homooligomerization|response to organophosphorus|xenobiotic metabolic process	cytosol	17-alpha,20-alpha-dihydroxypregn-4-en-3-one dehydrogenase activity|aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid binding|indanol dehydrogenase activity|trans-1,2-dihydrobenzene-1,2-diol dehydrogenase activity			ovary(2)	2					NADH(DB00157)	CGAACTCCCCGGTGCTCTTGG	0.592	Colon(130;2054 2316 13360 15380)		NA											22	100					1.39806e-14	2.46273e-14	0.008361	1	0
ITIH5	80760	broad.mit.edu	37	10	7679399	7679399	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:7679399G>T	uc001ijq.2	-	5	523	c.444C>A	c.(442-444)CCC>CCA	p.P148P	ITIH5_uc001ijr.1_Silent_p.P148P	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	148	VIT.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						TGTCCTTGCTGGGAATCACTG	0.547			NA											10	52					1.33987e-11	2.19165e-11	0.008291	1	0
ITGA8	8516	broad.mit.edu	37	10	15655678	15655678	+	Missense_Mutation	SNP	A	A	G	rs139049697	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:15655678A>G	uc001ioc.1	-	15	1534	c.1534T>C	c.(1534-1536)TCT>CCT	p.S512P	ITGA8_uc010qcb.1_Missense_Mutation_p.S497P	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	512	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GATGTCATAGAGTCTGGAACC	0.313			NA											4	134					0	0	0.000248	0	0
NEBL	10529	broad.mit.edu	37	10	21115394	21115394	+	Missense_Mutation	SNP	A	A	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:21115394A>C	uc001iqi.2	-	18	2248	c.1851T>G	c.(1849-1851)AAT>AAG	p.N617K	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron|NEBL_uc001iql.1_RNA	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	617	Nebulin 17.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						TATTCTGCTGATTTTTCTTCA	0.323			NA											8	90					0	0	0.006214	0	0
ZNF488	118738	broad.mit.edu	37	10	48371133	48371133	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:48371133C>A	uc001jex.2	+	2	763	c.601C>A	c.(601-603)CTC>ATC	p.L201I	ZNF488_uc001jey.2_Missense_Mutation_p.L94I	NM_153034	NP_694579	Q96MN9	ZN488_HUMAN	zinc finger protein 488	201					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CACTACAGACCTCGCTTGTTG	0.532			NA											20	44					0.00229938	0.00280084	0.002299	1	0
GDF10	2662	broad.mit.edu	37	10	48428987	48428987	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:48428987T>A	uc001jfb.2	-	2	1355	c.899A>T	c.(898-900)GAC>GTC	p.D300V	GDF10_uc009xnp.2_Missense_Mutation_p.D299V|GDF10_uc009xnq.1_Missense_Mutation_p.D300V	NM_004962	NP_004953	P55107	BMP3B_HUMAN	growth differentiation factor 10 precursor	300					growth|skeletal system development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity			lung(1)|central_nervous_system(1)	2						CAGCTCGTTGTCCTGGAGGGG	0.741			NA											6	9					0	0	0.001984	0	0
LRRC18	474354	broad.mit.edu	37	10	50121487	50121487	+	Silent	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:50121487G>C	uc001jhd.2	-	1	794	c.714C>G	c.(712-714)CCC>CCG	p.P238P	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Silent_p.P238P	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	238						cytoplasm				ovary(1)|pancreas(1)	2						AGATCAGATTGGGAAAGATGG	0.527			NA											51	97					0	0	0.00361	0	0
ZWINT	11130	broad.mit.edu	37	10	58119454	58119454	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:58119454C>A	uc001jjx.1	-	4	454	c.417G>T	c.(415-417)CAG>CAT	p.Q139H	ZWINT_uc001jjy.1_Missense_Mutation_p.Q139H|ZWINT_uc001jka.1_Missense_Mutation_p.Q139H|ZWINT_uc009xoy.1_RNA	NM_007057	NP_008988	O95229	ZWINT_HUMAN	ZW10 interactor isoform a	139	Interaction with NDC80 and ZW10.|Potential.				cell division|establishment of localization in cell|mitotic cell cycle checkpoint|mitotic prometaphase|mitotic sister chromatid segregation|phosphatidylinositol-mediated signaling|spindle organization	condensed chromosome kinetochore|cytosol|nucleus	protein N-terminus binding				0						GTACCTTGGCCTGGAGCTGCT	0.552			NA											20	212					4.30721e-22	8.32363e-22	0.001523	1	0
ANK3	288	broad.mit.edu	37	10	61830089	61830089	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:61830089T>A	uc001jky.2	-	37	10742	c.10550A>T	c.(10549-10551)GAT>GTT	p.D3517V	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3517					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GAAGTAAGTATCAGGAAACAC	0.423			NA											19	48					0	0	0.008871	0	0
JMJD1C	221037	broad.mit.edu	37	10	64958312	64958312	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:64958312T>A	uc001jmn.2	-	12	5752	c.5452A>T	c.(5452-5454)ACA>TCA	p.T1818S	JMJD1C_uc001jml.2_Missense_Mutation_p.T1599S|JMJD1C_uc001jmm.2_Missense_Mutation_p.T1530S|JMJD1C_uc010qiq.1_Missense_Mutation_p.T1636S|JMJD1C_uc009xpi.2_Missense_Mutation_p.T1636S|JMJD1C_uc009xpj.1_RNA|JMJD1C_uc009xpk.1_Intron	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	1818					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					TTTTCAGATGTTACTAATTGA	0.299			NA											42	74					0	0	0.002522	0	0
TMEM20	159371	broad.mit.edu	37	10	95661084	95661084	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:95661084G>T	uc001kjg.1	+	3	996	c.935G>T	c.(934-936)GGG>GTG	p.G312V	TMEM20_uc001kji.2_Intron|TMEM20_uc001kjf.1_Missense_Mutation_p.G311V|TMEM20_uc001kjh.2_Intron|TMEM20_uc010qnw.1_Missense_Mutation_p.G295V|TMEM20_uc001kjj.2_Intron	NM_001134658	NP_001128130	Q2M3R5	TMM20_HUMAN	transmembrane protein 20 isoform 1	312	Helical; (Potential).|DUF6 2.					integral to membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;3.46e-05)|Renal(717;0.018)|Ovarian(717;0.0228)|all_hematologic(284;0.189)		STAD - Stomach adenocarcinoma(243;0.00345)		GAAAAAGCAGGGCCAGTAGCA	0.408			NA											14	32					0.00185496	0.00228995	0.001855	1	0
PLCE1	51196	broad.mit.edu	37	10	96068457	96068457	+	Splice_Site	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:96068457G>T	uc001kjk.2	+	27	6637	c.6003_splice	c.e27+1	p.S2001_splice	PLCE1_uc010qnx.1_Splice_Site_p.S1985_splice|PLCE1_uc001kjm.2_Splice_Site_p.S1693_splice|PLCE1_uc001kjp.2_Splice_Site_p.S359_splice	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1						activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AGCCTCTTCGGTAATGAAGTT	0.408			NA											20	64					3.8784e-16	6.99334e-16	0.001882	1	0
ENTPD1	953	broad.mit.edu	37	10	97626107	97626107	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:97626107C>A	uc001klh.3	+	10	1824	c.1500C>A	c.(1498-1500)CAC>CAA	p.H500Q	ENTPD1_uc001kli.3_Missense_Mutation_p.H507Q|uc001klg.1_Intron|ENTPD1_uc010qoj.1_Missense_Mutation_p.H512Q|ENTPD1_uc010qok.1_Missense_Mutation_p.H392Q|ENTPD1_uc010qol.1_Missense_Mutation_p.H392Q|ENTPD1_uc010qom.1_Missense_Mutation_p.H459Q|ENTPD1_uc010qon.1_Missense_Mutation_p.H362Q|ENTPD1_uc009xva.2_Missense_Mutation_p.H362Q|ENTPD1_uc009xuz.2_RNA	NM_001776	NP_001767	P49961	ENTP1_HUMAN	ectonucleoside triphosphate diphosphohydrolase 1	500	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	ATP binding			ovary(3)	3		Colorectal(252;0.0821)		Epithelial(162;1.31e-07)|all cancers(201;5.33e-06)		TTATCTTTCACAAGCCTTCAT	0.453			NA											19	37					0.00188189	0.00231695	0.001882	1	0
TM9SF3	56889	broad.mit.edu	37	10	98311156	98311156	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:98311156C>A	uc001kmm.3	-	7	1022	c.805G>T	c.(805-807)GGA>TGA	p.G269*	TM9SF3_uc010qot.1_Nonsense_Mutation_p.G269*|TM9SF3_uc001kmn.1_Nonsense_Mutation_p.G38*	NM_020123	NP_064508	Q9HD45	TM9S3_HUMAN	transmembrane 9 superfamily member 3 precursor	269						integral to membrane	binding				0		Colorectal(252;0.158)		Epithelial(162;1.84e-09)|all cancers(201;2.84e-08)		TATTCATCTCCTAGGTCTCTA	0.328			NA											16	36					1.15088e-07	1.68403e-07	0.004007	1	0
SCD	6319	broad.mit.edu	37	10	102107276	102107276	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:102107276G>T	uc001kqy.2	+	1	505	c.15G>T	c.(13-15)TTG>TTT	p.L5F		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	5	Cytoplasmic (Potential).			L -> M (in Ref. 11; AAB30631).	fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		CGGCCCACTTGCTGCAGGACG	0.682	Colon(67;260 1459 9574 11663)		NA											12	35					2.31682e-05	3.04915e-05	0.003163	1	0
ATRNL1	26033	broad.mit.edu	37	10	116919973	116919973	+	Silent	SNP	A	A	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:116919973A>C	uc001lcg.2	+	6	1388	c.1002A>C	c.(1000-1002)CTA>CTC	p.L334L	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Silent_p.L334L|ATRNL1_uc009xyq.2_Silent_p.L334L	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	334	Extracellular (Potential).|Kelch 1.					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AAATGGTCCTAAAGTAAGTAT	0.323			NA											33	73					0	0	0.003755	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118364984	118364984	+	Nonsense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:118364984G>A	uc001lco.1	+	12	1277	c.1259G>A	c.(1258-1260)TGG>TAG	p.W420*	PNLIPRP1_uc001lcp.2_Nonsense_Mutation_p.W420*	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	420	PLAT.				lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		AAGTTTCTTTGGAATAACAAT	0.428			NA											5	49					0	0	0.001168	0	0
PNLIPRP2	5408	broad.mit.edu	37	10	118385455	118385455	+	Splice_Site	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:118385455A>T	uc001lcq.2	+	6	231	c.208_splice	c.e6-2	p.L70_splice	PNLIPRP2_uc009xyu.1_Splice_Site|PNLIPRP2_uc009xyv.1_Splice_Site	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2						galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		AAATTAAACCAGCTAATCACT	0.438			NA											20	22					0	0	0.001523	0	0
TACC2	10579	broad.mit.edu	37	10	123987490	123987490	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:123987490G>T	uc001lfv.2	+	14	8223	c.7863G>T	c.(7861-7863)ATG>ATT	p.M2621I	TACC2_uc001lfw.2_Missense_Mutation_p.M767I|TACC2_uc009xzx.2_Missense_Mutation_p.M2576I|TACC2_uc010qtv.1_Missense_Mutation_p.M2625I|TACC2_uc001lfx.2_Missense_Mutation_p.M325I|TACC2_uc001lfy.2_Missense_Mutation_p.M321I|TACC2_uc001lfz.2_Missense_Mutation_p.M699I|TACC2_uc001lga.2_Missense_Mutation_p.M699I|TACC2_uc009xzy.2_Missense_Mutation_p.M711I|TACC2_uc001lgb.2_Missense_Mutation_p.M656I	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2621						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TGGAGGCCATGGGCTTGGGCA	0.567			NA											21	76					2.89027e-11	4.66107e-11	0.002299	1	0
NUP98	4928	broad.mit.edu	37	11	3740728	3740728	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:3740728C>A	uc001lyh.2	-	18	2604	c.2313G>T	c.(2311-2313)TTG>TTT	p.L771F	NUP98_uc001lyi.2_Missense_Mutation_p.L771F|NUP98_uc001lyj.1_Missense_Mutation_p.L771F|NUP98_uc001lyk.1_Missense_Mutation_p.L788F	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	788	Peptidase S59.				carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		CAATATCATCCAAATTTAGAT	0.333			NA	T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								20	31					5.03518e-11	8.00734e-11	0.007413	1	0
OR52M1	119772	broad.mit.edu	37	11	4566822	4566822	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:4566822T>C	uc010qyf.1	+	1	402	c.402T>C	c.(400-402)CAT>CAC	p.H134H		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CACTACGTCATAGCATGGTGC	0.527			NA											9	49					0	0	0.004482	0	0
C11orf40	143501	broad.mit.edu	37	11	4594548	4594548	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:4594548C>A	uc010qyg.1	-	2	296	c.296G>T	c.(295-297)TGC>TTC	p.C99F		NM_144663	NP_653264	Q8WZ69	CK040_HUMAN	hypothetical protein LOC143501	99								p.C99*(1)		ovary(2)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;4.28e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0288)|LUSC - Lung squamous cell carcinoma(625;0.192)		TACCCTAAAGCAAGGTCTTTT	0.488			NA											22	60					5.35356e-11	8.48419e-11	0.00278	1	0
OR52A1	23538	broad.mit.edu	37	11	5173339	5173339	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:5173339G>C	uc010qyy.1	-	1	261	c.261C>G	c.(259-261)TTC>TTG	p.F87L		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	87	Extracellular (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CATTAAACCAGAATATTCCAA	0.453			NA											4	14					0	0	0.000248	0	0
FAM160A2	84067	broad.mit.edu	37	11	6238611	6238611	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:6238611C>G	uc001mcl.3	-	9	2564	c.2205G>C	c.(2203-2205)CAG>CAC	p.Q735H	FAM160A2_uc001mck.3_Missense_Mutation_p.Q749H|FAM160A2_uc001mcm.2_Missense_Mutation_p.Q735H	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	735					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						CAGTGAAGGGCTGGCTTGGCA	0.567			NA											9	25					0	0	0.006214	0	0
TRIM3	10612	broad.mit.edu	37	11	6478952	6478952	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:6478952C>A	uc001mdh.2	-	5	876	c.489G>T	c.(487-489)CAG>CAT	p.Q163H	TRIM3_uc001mdi.2_Missense_Mutation_p.Q163H|TRIM3_uc010raj.1_Missense_Mutation_p.Q44H|TRIM3_uc009yfd.2_Missense_Mutation_p.Q163H|TRIM3_uc010rak.1_Missense_Mutation_p.Q163H|TRIM3_uc001mdj.2_Missense_Mutation_p.Q44H	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	163	Potential.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CGAGCTGGCGCTGCAGGGCCG	0.677	Melanoma(6;5 510 1540 25169 29084)		NA											15	41					3.27435e-08	4.88486e-08	0.00245	1	0
NLRP14	338323	broad.mit.edu	37	11	7065059	7065059	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:7065059G>A	uc001mfb.1	+	4	2125	c.1802G>A	c.(1801-1803)TGT>TAT	p.C601Y		NM_176822	NP_789792	Q86W24	NAL14_HUMAN	NLR family, pyrin domain containing 14	601					cell differentiation|multicellular organismal development|spermatogenesis		ATP binding			ovary(3)|breast(2)|pancreas(1)|lung(1)|skin(1)	8				Epithelial(150;4.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0871)		GCAATGAGATGTTTCCCAAAG	0.423			NA											20	64					0	0	0.002299	0	0
API5	8539	broad.mit.edu	37	11	43340233	43340233	+	Missense_Mutation	SNP	G	G	A	rs35999189		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:43340233G>A	uc010rfh.1	+	2	286	c.113G>A	c.(112-114)GGT>GAT	p.G38D	API5_uc010rfg.1_Missense_Mutation_p.G27D|API5_uc001mxf.2_Missense_Mutation_p.G38D|API5_uc010rfi.1_Intron|API5_uc001mxg.2_5'UTR	NM_001142930	NP_001136402	Q9BZZ5	API5_HUMAN	apoptosis inhibitor 5 isoform a	38					anti-apoptosis|apoptosis	cytoplasm|spliceosomal complex	fibroblast growth factor binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						GTGAAAGGTGGTACTAAGGAA	0.368	Pancreas(1;98 122 5625 20895 49453)		NA											16	43					0	0	0.004007	0	0
SYT13	57586	broad.mit.edu	37	11	45277237	45277237	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:45277237A>T	uc001myq.2	-	2	515	c.389T>A	c.(388-390)CTG>CAG	p.L130Q	SYT13_uc009yku.1_5'UTR	NM_020826	NP_065877	Q7L8C5	SYT13_HUMAN	synaptotagmin XIII	130	Cytoplasmic (Potential).					transport vesicle				ovary(1)	1						GAGGATGAACAGCTCCTCTGT	0.582			NA											6	25					0	0	0.001984	0	0
OR4S1	256148	broad.mit.edu	37	11	48328158	48328158	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:48328158G>T	uc010rhu.1	+	1	384	c.384G>T	c.(382-384)CTG>CTT	p.L128L		NM_001004725	NP_001004725	Q8NGB4	OR4S1_HUMAN	olfactory receptor, family 4, subfamily S,	128	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTAGGCCCCTGCACTACACAG	0.582			NA											25	66					9.80776e-20	1.86388e-19	0.00632	1	0
OR4C46	119749	broad.mit.edu	37	11	51515998	51515998	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:51515998C>A	uc010ric.1	+	1	717	c.717C>A	c.(715-717)GTC>GTA	p.V239V		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CCACCTGTGTCTCCCACATCA	0.463			NA											7	64					6.5536e-12	1.08359e-11	0.00308	1	0
OR4C16	219428	broad.mit.edu	37	11	55340262	55340262	+	Missense_Mutation	SNP	T	T	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:55340262T>G	uc010rih.1	+	1	659	c.659T>G	c.(658-660)TTG>TGG	p.L220W		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GTCATCTTCTTGCATTCTCTG	0.418			NA											10	31					0	0	0.008291	0	0
OR5D14	219436	broad.mit.edu	37	11	55563554	55563554	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:55563554G>C	uc010rim.1	+	1	523	c.523G>C	c.(523-525)GTA>CTA	p.V175L		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	175	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TGGACCTAATGTAATCAACCA	0.498			NA											28	134					0	0	0.002096	0	0
OR5M1	390168	broad.mit.edu	37	11	56380513	56380513	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:56380513C>T	uc001nja.1	-	1	466	c.466G>A	c.(466-468)GGG>AGG	p.G156R		NM_001004740	NP_001004740	Q8NGP8	OR5M1_HUMAN	olfactory receptor, family 5, subfamily M,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						TGAGAGAACCCACTAAGAAAC	0.458			NA											12	41					0	0	0.000978	0	0
OR4D6	219983	broad.mit.edu	37	11	59224911	59224911	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:59224911G>A	uc010rku.1	+	1	478	c.478G>A	c.(478-480)GTA>ATA	p.V160I		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	160	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AATCATCCAGGTAATTCTGAT	0.527			NA											43	63					0	0	0.002222	0	0
CD5	921	broad.mit.edu	37	11	60889151	60889151	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:60889151C>A	uc009ynk.2	+	6	977	c.874C>A	c.(874-876)CGC>AGC	p.R292S		NM_014207	NP_055022	P06127	CD5_HUMAN	CD5 molecule precursor	292	Extracellular (Potential).|SRCR 3.				cell proliferation|cell recognition	integral to plasma membrane	scavenger receptor activity			ovary(1)	1		all_lung(304;5.94e-05)|Lung NSC(402;7.26e-05)		BRCA - Breast invasive adenocarcinoma(625;0.000946)|Lung(977;0.0086)|LUSC - Lung squamous cell carcinoma(625;0.0528)		CGTGGAGGTGCGCCAGGGGGC	0.657			NA											12	36					1.08611e-07	1.59948e-07	0.000978	1	0
SYT7	9066	broad.mit.edu	37	11	61291321	61291321	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:61291321G>A	uc001nrv.2	-	7	891	c.885C>T	c.(883-885)GCC>GCT	p.A295A	SYT7_uc009ynr.2_Silent_p.A370A	NM_004200	NP_004191	O43581	SYT7_HUMAN	synaptotagmin VII	295	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			ovary(3)|pancreas(1)	4						CGATGTCCATGGCTTTGAGGT	0.607			NA											119	185					0	0	0.00361	0	0
SLC22A25	387601	broad.mit.edu	37	11	62997100	62997100	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:62997100G>T	uc001nwr.1	-	1	25	c.25C>A	c.(25-27)CAA>AAA	p.Q9K	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Missense_Mutation_p.Q9K	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	9	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CCTCCAACTTGATCTAGGAGG	0.438			NA											19	25					5.03518e-11	8.00734e-11	0.007413	1	0
ANO1	55107	broad.mit.edu	37	11	70033898	70033898	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:70033898A>G	uc001opj.2	+	26	3054	c.2749A>G	c.(2749-2751)AAG>GAG	p.K917E	ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.K626E|ANO1_uc010rql.1_Missense_Mutation_p.K91E	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	917	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						GGACATCCCCAAGGACATCAG	0.582			NA											4	12					0	0	0.000248	0	0
P2RY6	5031	broad.mit.edu	37	11	73008546	73008546	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:73008546G>A	uc001otm.2	+	4	1388	c.983G>A	c.(982-984)CGC>CAC	p.R328H	P2RY6_uc001otn.2_Missense_Mutation_p.R328H|P2RY6_uc001oto.2_Missense_Mutation_p.R328H|P2RY6_uc001otp.2_Missense_Mutation_p.R328H|P2RY6_uc001otq.2_Missense_Mutation_p.R328H|P2RY6_uc001otr.2_Missense_Mutation_p.R328H|P2RY6_uc001ots.2_Missense_Mutation_p.R328H	NM_176796	NP_789766	Q15077	P2RY6_HUMAN	pyrimidinergic receptor P2Y6	328	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1						AGGCAGGGTCGCTGAGTCCTC	0.577			NA											10	29					0	0	0.008291	0	0
MYO7A	4647	broad.mit.edu	37	11	76892594	76892595	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:76892594_76892595GG>TT	uc001oyb.2	+	23	3135_3136	c.2863_2864GG>TT	c.(2863-2865)GGC>TTC	p.G955F	MYO7A_uc010rsl.1_Missense_Mutation_p.G955F|MYO7A_uc010rsm.1_Missense_Mutation_p.G944F|MYO7A_uc001oyc.2_Missense_Mutation_p.G955F|MYO7A_uc001oyd.2_Missense_Mutation_p.G295F|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.G166F	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	955			G -> S (in USH1B).		actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GACTTCAGGTGGCCTGCCAGGC	0.604			NA											7	22					0	0	0.004672	0	0
MYO7A	4647	broad.mit.edu	37	11	76924959	76924959	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:76924959A>G	uc001oyb.2	+	48	6765	c.6493A>G	c.(6493-6495)ACC>GCC	p.T2165A	MYO7A_uc001oyc.2_Missense_Mutation_p.T2125A|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	2165	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						CAGCGGCAACACCTACTTCCA	0.607			NA											25	100					0	0	0.007291	0	0
BTG4	54766	broad.mit.edu	37	11	111368781	111368781	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:111368781G>T	uc001plj.2	-	3	438	c.253C>A	c.(253-255)CAC>AAC	p.H85N	BTG4_uc001plk.2_Missense_Mutation_p.H85N	NM_017589	NP_060059	Q9NY30	BTG4_HUMAN	B-cell translocation gene 4	85					cell cycle arrest|negative regulation of cell proliferation|neuron differentiation						0		all_cancers(61;3.78e-13)|all_epithelial(67;5.29e-08)|Melanoma(852;3.15e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0204)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;1.22e-06)|BRCA - Breast invasive adenocarcinoma(274;1.72e-06)|all cancers(92;2.18e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0509)		AGTCCCAGGTGAGAAAAATCT	0.403			NA											20	29					2.4624e-09	3.74677e-09	0.008871	1	0
KCNJ5	3762	broad.mit.edu	37	11	128781777	128781777	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:128781777C>A	uc001qet.2	+	2	923	c.609C>A	c.(607-609)TCC>TCA	p.S203S	KCNJ5_uc009zck.2_Silent_p.S203S|KCNJ5_uc001qew.2_Silent_p.S203S	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	203	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	TCATGTTTTCCAACAACGCAG	0.592	Pancreas(108;2548 5082)|Esophageal Squamous(165;4544 6231)		NA											7	65					8.12818e-05	0.000106363	0.001984	1	0
NTM	50863	broad.mit.edu	37	11	132177606	132177606	+	Nonsense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:132177606G>T	uc001qgp.2	+	4	1214	c.550G>T	c.(550-552)GAA>TAA	p.E184*	NTM_uc001qgm.2_Nonsense_Mutation_p.E184*|NTM_uc010sch.1_Nonsense_Mutation_p.E175*|NTM_uc010sci.1_Nonsense_Mutation_p.E184*|NTM_uc010scj.1_Nonsense_Mutation_p.E143*|NTM_uc001qgo.2_Nonsense_Mutation_p.E184*|NTM_uc001qgq.2_Nonsense_Mutation_p.E184*|NTM_uc001qgr.2_5'UTR	NM_016522	NP_057606	Q9P121	NTRI_HUMAN	neurotrimin isoform 1	184	Ig-like C2-type 2.				cell adhesion|neuron recognition	anchored to membrane|plasma membrane				ovary(4)|central_nervous_system(1)|skin(1)	6						GAGTGAAGACGAATACTTGGA	0.493			NA											10	51					7.48243e-07	1.05445e-06	0.006214	1	0
CCND2	894	broad.mit.edu	37	12	4383338	4383338	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:4383338C>T	uc001qmo.2	+	1	437	c.132C>T	c.(130-132)TTC>TTT	p.F44F		NM_001759	NP_001750	P30279	CCND2_HUMAN	cyclin D2	44	Cyclin N-terminal.				cell division|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation	cyclin-dependent protein kinase holoenzyme complex|cytoplasm|membrane|nucleus	protein kinase binding			haematopoietic_and_lymphoid_tissue(1)|breast(1)|kidney(1)	3			all cancers(3;4.15e-10)|GBM - Glioblastoma multiforme(3;6.34e-05)|Colorectal(7;0.00245)|OV - Ovarian serous cystadenocarcinoma(31;0.00301)|COAD - Colon adenocarcinoma(12;0.0264)|STAD - Stomach adenocarcinoma(119;0.206)			GCTCCTACTTCAAGTGCGTGC	0.652			NA	T	IGL@	NHL,CLL								29	56					0	0	0.007291	0	0
TAS2R30	259293	broad.mit.edu	37	12	11286256	11286256	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:11286256C>A	uc009zhs.1	-	1	588	c.588G>T	c.(586-588)CTG>CTT	p.L196L	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_001097643	NP_001091112			type 2 taste receptor member 30												0						AGATTAACAGCAGAAAAGATA	0.418			NA											57	179					2.30037e-20	4.38987e-20	0.00361	1	0
KIAA1467	57613	broad.mit.edu	37	12	13208723	13208723	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:13208723G>T	uc001rbi.2	+	2	299	c.276G>T	c.(274-276)CAG>CAT	p.Q92H	KIAA1467_uc009zhx.1_RNA	NM_020853	NP_065904	A2RU67	K1467_HUMAN	hypothetical protein LOC57613	92						integral to membrane				central_nervous_system(2)|skin(1)	3		Prostate(47;0.184)		BRCA - Breast invasive adenocarcinoma(232;0.157)		GCCTGGAACAGAAGGCGGCCT	0.577			NA											28	66					1.75199e-13	3.01658e-13	0.007291	1	0
RASSF8	11228	broad.mit.edu	37	12	26218312	26218312	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:26218312C>T	uc001rgx.2	+	3	1206	c.985C>T	c.(985-987)CGC>TGC	p.R329C	RASSF8_uc001rgy.2_Missense_Mutation_p.R329C|RASSF8_uc001rgz.2_Missense_Mutation_p.R329C|RASSF8_uc009zjd.1_Missense_Mutation_p.R329C|RASSF8_uc009zje.1_Missense_Mutation_p.R329C	NM_007211	NP_009142	Q8NHQ8	RASF8_HUMAN	Ras association (RalGDS/AF-6) domain family	329					signal transduction						0	Colorectal(261;0.0847)					AGCCACCAAACGCTTACAGGT	0.408			NA											21	54					0	0	0.002299	0	0
DDX11	1663	broad.mit.edu	37	12	31242051	31242051	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:31242051A>T	uc001rjt.1	+	7	1009	c.758A>T	c.(757-759)AAG>ATG	p.K253M	DDX11_uc010sjw.1_Missense_Mutation_p.K253M|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Missense_Mutation_p.K253M|DDX11_uc001rjs.1_Missense_Mutation_p.K253M|DDX11_uc001rju.1_Translation_Start_Site|DDX11_uc001rjv.1_Missense_Mutation_p.K253M|DDX11_uc001rjw.1_Missense_Mutation_p.K227M|DDX11_uc001rjx.1_Translation_Start_Site|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	253	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					CCCTTTGGCAAGGATGTTCGG	0.537			NA								Multiple Myeloma(12;0.14)			20	43					0	0	0.002299	0	0
BICD1	636	broad.mit.edu	37	12	32480553	32480553	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:32480553G>T	uc001rku.2	+	5	1245	c.1164G>T	c.(1162-1164)AAG>AAT	p.K388N	BICD1_uc001rkv.2_Missense_Mutation_p.K388N|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	388	Potential.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			AGGAGCTCAAGGCTGAGCTGG	0.587			NA											10	15					0.000442599	0.000561525	0.006214	1	0
SYT10	341359	broad.mit.edu	37	12	33579232	33579232	+	Missense_Mutation	SNP	T	T	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:33579232T>G	uc001rll.1	-	2	647	c.350A>C	c.(349-351)AAG>ACG	p.K117T	SYT10_uc009zju.1_5'UTR	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	117	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTCATTTTCCTTAATTTCTTT	0.408			NA											13	87					0	0	0.001855	0	0
C12orf40	283461	broad.mit.edu	37	12	40115022	40115022	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:40115022C>A	uc001rmc.2	+	13	2095	c.1928C>A	c.(1927-1929)ACT>AAT	p.T643N	C12orf40_uc009zjv.1_Intron	NM_001031748	NP_001026918	Q86WS4	CL040_HUMAN	hypothetical protein LOC283461	643										ovary(6)	6						GCAGATACCACTGGAGGGCAG	0.358			NA											14	28					1.3612e-06	1.89493e-06	0.003163	1	0
ADAMTS20	80070	broad.mit.edu	37	12	43847712	43847712	+	Silent	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:43847712A>T	uc010skx.1	-	12	1758	c.1758T>A	c.(1756-1758)CCT>CCA	p.P586P		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	586	TSP type-1 1.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		AGACATACTCAGGACGATTAC	0.423			NA											3	10					0	0	0.004672	0	0
IRAK4	51135	broad.mit.edu	37	12	44161952	44161952	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:44161952G>T	uc001rnu.3	+	3	168	c.38G>T	c.(37-39)TGC>TTC	p.C13F	IRAK4_uc001rnt.3_Missense_Mutation_p.C13F|IRAK4_uc001rnx.3_5'UTR|IRAK4_uc001rny.3_5'UTR|IRAK4_uc010sky.1_Intron|IRAK4_uc001rnv.3_5'UTR|IRAK4_uc001rnw.3_5'UTR	NM_001114182	NP_001107654	Q9NWZ3	IRAK4_HUMAN	interleukin-1 receptor-associated kinase 4	13					innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0	all_cancers(12;0.00149)	Lung NSC(34;0.0804)|all_lung(34;0.181)		GBM - Glioblastoma multiforme(48;0.04)		TATGTGCGCTGCCTCAATGTT	0.343			NA											4	16					0.00024832	0.000318573	0.000248	1	0
NELL2	4753	broad.mit.edu	37	12	44915854	44915854	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:44915854G>T	uc001rog.2	-	18	2699	c.2104C>A	c.(2104-2106)CAT>AAT	p.H702N	NELL2_uc001rof.3_Missense_Mutation_p.H701N|NELL2_uc001roh.2_Missense_Mutation_p.H702N|NELL2_uc009zkd.2_Missense_Mutation_p.H654N|NELL2_uc010skz.1_Missense_Mutation_p.H752N|NELL2_uc010sla.1_Missense_Mutation_p.H725N	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	702	VWFC 4.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		CCATTTTGATGGAGGCACTGA	0.453			NA											7	28					1.26484e-09	1.96373e-09	0.00308	1	0
KRT6B	3854	broad.mit.edu	37	12	52845777	52845777	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:52845777C>A	uc001sak.2	-	1	134	c.86G>T	c.(85-87)AGC>ATC	p.S29I		NM_005555	NP_005546	P04259	K2C6B_HUMAN	keratin 6B	29	Head.				ectoderm development	keratin filament	structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.083)		GCCAGAGCGGCTGACCCCAGG	0.647			NA											22	32					4.22769e-11	6.79398e-11	0.00632	1	0
PCBP2	5094	broad.mit.edu	37	12	53853102	53853102	+	Missense_Mutation	SNP	C	C	T	rs111807426		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:53853102C>T	uc001sdl.3	+	6	640	c.290C>T	c.(289-291)CCG>CTG	p.P97L	PCBP2_uc001sdc.3_Missense_Mutation_p.P97L|PCBP2_uc001sdb.3_Missense_Mutation_p.P97L|PCBP2_uc001sde.3_Missense_Mutation_p.P97L|PCBP2_uc001sdi.3_Missense_Mutation_p.P97L|PCBP2_uc001sdd.3_Missense_Mutation_p.P97L|PCBP2_uc001sdf.3_Missense_Mutation_p.P97L|PCBP2_uc009zna.2_Missense_Mutation_p.P58L|PCBP2_uc010soh.1_Missense_Mutation_p.P97L|PCBP2_uc009zmz.1_Missense_Mutation_p.P39L|PCBP2_uc001sdg.1_RNA	NM_001128911	NP_001122383	Q15366	PCBP2_HUMAN	poly(rC) binding protein 2 isoform d	97	KH 2.				innate immune response|negative regulation of defense response to virus|negative regulation of type I interferon production|nuclear mRNA splicing, via spliceosome|proteasomal ubiquitin-dependent protein catabolic process|response to virus	cytosol|nucleoplasm|ribonucleoprotein complex	DNA binding|RNA binding|ubiquitin protein ligase binding				0						AGTAGACCCCCGGTCACCCTG	0.488			NA											23	63					0	0	0.00333	0	0
INHBC	3626	broad.mit.edu	37	12	57843451	57843451	+	Silent	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:57843451A>T	uc001snv.1	+	2	832	c.705A>T	c.(703-705)CGA>CGT	p.R235R		NM_005538	NP_005529	P55103	INHBC_HUMAN	inhibin beta C chain preproprotein	235					growth	extracellular region	growth factor activity|hormone activity|transforming growth factor beta receptor binding				0						AGATTCACCGACGAGGCATCG	0.582			NA											11	24					0	0	0.000978	0	0
BEST3	144453	broad.mit.edu	37	12	70049315	70049315	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr12:70049315G>T	uc001svg.2	-	10	1606	c.1379C>A	c.(1378-1380)CCC>CAC	p.P460H	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.P247H|BEST3_uc010stm.1_Missense_Mutation_p.P354H	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	460	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GTGCAGCGTGGGGCTTCCTTC	0.592			NA											18	44					5.03518e-11	8.00734e-11	0.007413	1	0
SPATA13	221178	broad.mit.edu	37	13	24876744	24876744	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:24876744A>T	uc001upg.1	+	12	2199	c.1792A>T	c.(1792-1794)AGG>TGG	p.R598W	SPATA13_uc001upd.1_Missense_Mutation_p.R1223W|C1QTNF9_uc001upe.2_Intron|SPATA13_uc010tcy.1_Missense_Mutation_p.Q545L|SPATA13_uc010tcz.1_Missense_Mutation_p.R482W|SPATA13_uc010tda.1_Missense_Mutation_p.R542W|SPATA13_uc001uph.2_Missense_Mutation_p.R520W|SPATA13_uc010tdb.1_Missense_Mutation_p.R458W|SPATA13_uc009zzz.1_Missense_Mutation_p.Q155L	NM_153023	NP_694568	Q96N96	SPT13_HUMAN	spermatogenesis associated 13	598	C-terminal tail.				cell migration|filopodium assembly|lamellipodium assembly|regulation of cell migration|regulation of Rho protein signal transduction	cytoplasm|filopodium|lamellipodium|ruffle membrane	protein binding|Rac guanyl-nucleotide exchange factor activity			skin(2)|ovary(1)	3		all_cancers(29;4.05e-15)|all_lung(29;2.77e-14)|all_epithelial(30;7.77e-13)|Lung SC(185;0.0279)		all cancers(112;0.00616)|Epithelial(112;0.0195)|OV - Ovarian serous cystadenocarcinoma(117;0.0705)|Lung(94;0.231)		AGGCTACAACAGGTGCCCTGT	0.582			NA											20	85					0	0	0.00278	0	0
HTR2A	3356	broad.mit.edu	37	13	47409077	47409077	+	Silent	SNP	C	C	T	rs143205112		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:47409077C>T	uc001vbq.2	-	3	1445	c.1311G>A	c.(1309-1311)AAG>AAA	p.K437K	HTR2A_uc001vbr.2_Silent_p.K337K|HTR2A_uc010acr.2_Silent_p.K437K	NM_000621	NP_000612	P28223	5HT2A_HUMAN	5-hydroxytryptamine receptor 2A isoform 1	437	Cytoplasmic (By similarity).				ERK1 and ERK2 cascade|phosphatidylinositol 3-kinase cascade|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	integral to plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|serotonin binding|serotonin receptor activity			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		all_lung(13;7.2e-10)|Lung NSC(96;3.77e-07)|Breast(56;2.06e-05)|Prostate(109;0.00116)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)|Myeloproliferative disorder(33;0.0333)		GBM - Glioblastoma multiforme(144;4.67e-05)|COAD - Colon adenocarcinoma(199;0.224)	Aripiprazole(DB01238)|Chlorpromazine(DB00477)|Chlorprothixene(DB01239)|Cisapride(DB00604)|Clomipramine(DB01242)|Clozapine(DB00363)|Cyclobenzaprine(DB00924)|Cyproheptadine(DB00434)|Dihydroergotamine(DB00320)|Donepezil(DB00843)|Epinastine(DB00751)|Ergotamine(DB00696)|Fluvoxamine(DB00176)|Mesoridazine(DB00933)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Nefazodone(DB01149)|Olanzapine(DB00334)|Paliperidone(DB01267)|Paroxetine(DB00715)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Tranylcypromine(DB00752)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	TATCTGTTGTCTTGGCATCTT	0.413			NA											14	84					0	0	0.00245	0	0
ATP7B	540	broad.mit.edu	37	13	52513211	52513211	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:52513211C>T	uc001vfw.2	-	17	3832	c.3675G>A	c.(3673-3675)AAG>AAA	p.K1225K	ATP7B_uc010adv.2_Silent_p.K795K|ATP7B_uc001vfx.2_Silent_p.K1018K|ATP7B_uc001vfy.2_Silent_p.K1114K|ATP7B_uc010tgt.1_Silent_p.K1160K|ATP7B_uc010tgu.1_Silent_p.K1177K|ATP7B_uc010tgv.1_Silent_p.K1147K|ATP7B_uc001vfv.2_Silent_p.K497K|ATP7B_uc010tgs.1_Silent_p.K436K	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	1225	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		CTCTGGCTGTCTTCCGGTTGT	0.542			NA							Wilson_disease				48	67					0	0	0.00361	0	0
KLHL1	57626	broad.mit.edu	37	13	70681438	70681438	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:70681438C>T	uc001vip.2	-	1	1188	c.394G>A	c.(394-396)GGC>AGC	p.G132S	KLHL1_uc010thm.1_Missense_Mutation_p.G132S|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	132					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		AAGTCCATGCCTGGCACCACC	0.582			NA											45	59					0	0	0.003214	0	0
MYCBP2	23077	broad.mit.edu	37	13	77900726	77900726	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:77900726C>A	uc001vkf.2	-	2	162	c.71G>T	c.(70-72)GGT>GTT	p.G24V	MYCBP2_uc010aev.2_5'UTR	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	24					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		CTGGTAGTGACCCCGGGAGTC	0.726			NA											4	13					2.56e-06	3.47917e-06	0.000248	1	0
SLITRK1	114798	broad.mit.edu	37	13	84454234	84454234	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:84454234A>T	uc001vlk.2	-	1	2295	c.1409T>A	c.(1408-1410)ATG>AAG	p.M470K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	470	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CAGTTTGGGCATGGCATTGAA	0.557			NA											5	44					0	0	0.000602	0	0
GPC6	10082	broad.mit.edu	37	13	94679996	94679996	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:94679996C>A	uc001vlt.2	+	4	1357	c.725C>A	c.(724-726)CCA>CAA	p.P242Q	GPC6_uc010tig.1_Missense_Mutation_p.P242Q	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	242						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				AGCCCAACCCCAGGGTGTATC	0.453			NA											15	108					1.35283e-19	2.56031e-19	0.004007	1	0
NALCN	259232	broad.mit.edu	37	13	101728231	101728232	+	Missense_Mutation	DNP	CC	CC	GA			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr13:101728231_101728232CC>GA	uc001vox.1	-	35	4135_4136	c.3946_3947GG>TC	c.(3946-3948)GGA>TCA	p.G1316S		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1316	Helical; Voltage-sensor; Name=S4 of repeat IV; (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TACATGTTTTCCACAGATGGAG	0.322			NA											25	36					0	0	0.004672	0	0
POTEG	404785	broad.mit.edu	37	14	19553735	19553735	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:19553735C>T	uc001vuz.1	+	1	371	c.319C>T	c.(319-321)CCC>TCC	p.P107S	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	107										ovary(1)	1						CCACTGCTTCCCCTGCTGCAG	0.602			NA											58	718					0	0	0.00361	0	0
TEP1	7011	broad.mit.edu	37	14	20859156	20859156	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:20859156C>A	uc001vxe.2	-	14	2237	c.2197G>T	c.(2197-2199)GTG>TTG	p.V733L	TEP1_uc010ahk.2_Missense_Mutation_p.V83L|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Missense_Mutation_p.V625L	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	733					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		GCCTTAAGCACTGCAGTCTTC	0.537			NA											14	74					4.14922e-12	6.8853e-12	0.004007	1	0
MYH7	4625	broad.mit.edu	37	14	23887558	23887558	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:23887558G>T	uc001wjx.2	-	30	4136	c.4030C>A	c.(4030-4032)CGG>AGG	p.R1344R	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1344	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TACTGCTCCCGCAGCAGGTCG	0.662			NA											8	56					5.18039e-06	6.91726e-06	0.00308	1	0
PYGL	5836	broad.mit.edu	37	14	51401905	51401905	+	Splice_Site	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:51401905T>A	uc001wyu.2	-	3	473	c.346_splice	c.e3-1	p.L116_splice	PYGL_uc010tqq.1_Splice_Site_p.L82_splice|PYGL_uc001wyv.2_Splice_Site|PYGL_uc001wyw.3_Splice_Site_p.L116_splice	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1						glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	CAATCCAAGCTGGTAATGAAA	0.418			NA											14	17					0	0	0.001855	0	0
ZFP36L1	677	broad.mit.edu	37	14	69256753	69256753	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:69256753G>A	uc001xkh.1	-	2	644	c.514C>T	c.(514-516)CGC>TGC	p.R172C	ZFP36L1_uc001xki.1_Missense_Mutation_p.R172C	NM_004926	NP_004917	Q07352	TISB_HUMAN	butyrate response factor 1	172	C3H1-type 2.				regulation of mRNA stability	cytosol|nucleus	DNA binding|mRNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				all cancers(60;0.00203)|BRCA - Breast invasive adenocarcinoma(234;0.00205)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		AAGTGGCAGCGGGGCCCGTAG	0.667			NA									OREG0022753	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	74					0	0	0.003163	0	0
PCNX	22990	broad.mit.edu	37	14	71555084	71555084	+	Missense_Mutation	SNP	T	T	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:71555084T>G	uc001xmo.2	+	29	5821	c.5375T>G	c.(5374-5376)CTC>CGC	p.L1792R	PCNX_uc010are.1_Missense_Mutation_p.L1681R|PCNX_uc010arf.1_Missense_Mutation_p.L580R	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1792						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CTAGTGACTCTCTGTTATGGA	0.393			NA											45	29					0	0	0.00361	0	0
YLPM1	56252	broad.mit.edu	37	14	75279466	75279466	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:75279466G>T	uc001xqj.3	+	11	5607	c.5483G>T	c.(5482-5484)CGG>CTG	p.R1828L	YLPM1_uc001xql.3_RNA|YLPM1_uc001xqm.1_Missense_Mutation_p.R311L	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1633					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CCACCGGGCCGGGAGAGCAGA	0.473			NA											8	8					0.000157383	0.000203047	0.00308	1	0
C14orf145	145508	broad.mit.edu	37	14	81371171	81371171	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:81371171C>T	uc001xux.2	-	5	637	c.466G>A	c.(466-468)GAT>AAT	p.D156N	C14orf145_uc001xuz.2_Missense_Mutation_p.D156N|C14orf145_uc001xva.1_Missense_Mutation_p.D156N|C14orf145_uc001xuy.1_Missense_Mutation_p.D14N	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	156						centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		GTCATATCATCAGTCTCTTGA	0.393			NA											36	41					0	0	0.004878	0	0
EML5	161436	broad.mit.edu	37	14	89205241	89205241	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:89205241T>C	uc001xxg.2	-	7	1015	c.829A>G	c.(829-831)ACA>GCA	p.T277A		NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	277						cytoplasm|microtubule				ovary(3)	3						CCCTGGTCTGTTTCCCTGAGA	0.363			NA											5	11					0	0	0.000602	0	0
VRK1	7443	broad.mit.edu	37	14	97321607	97321607	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:97321607G>T	uc001yft.2	+	8	729	c.623G>T	c.(622-624)GGA>GTA	p.G208V		NM_003384	NP_003375	Q99986	VRK1_HUMAN	vaccinia related kinase 1	208	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein binding|protein serine/threonine kinase activity			large_intestine(1)|stomach(1)	2		Melanoma(154;0.155)		COAD - Colon adenocarcinoma(157;0.234)		TGCCCAGAAGGAGTTCATAAA	0.408			NA											10	86					1.33987e-11	2.19165e-11	0.008291	1	0
HHIPL1	84439	broad.mit.edu	37	14	100129283	100129283	+	Missense_Mutation	SNP	G	G	T	rs142621182		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr14:100129283G>T	uc010avs.2	+	6	1638	c.1573G>T	c.(1573-1575)GGC>TGC	p.G525C	HHIPL1_uc001ygl.1_Missense_Mutation_p.G525C	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	525					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				CATGGGCCACGGCCAGACCTG	0.582			NA											17	60					3.52763e-06	4.76594e-06	0.00499	1	0
SNRPN	6638	broad.mit.edu	37	15	25221464	25221464	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:25221464G>T	uc001ywp.1	+	9	1058	c.168G>T	c.(166-168)GCG>GCT	p.A56A	SNRPN_uc001ywq.1_Silent_p.A56A|SNRPN_uc001ywr.1_Silent_p.A56A|SNRPN_uc001yws.1_Silent_p.A56A|SNRPN_uc001ywt.1_Silent_p.A56A|SNRPN_uc001ywv.1_Silent_p.A59A|SNRPN_uc001yww.1_Silent_p.A56A|SNRPN_uc001ywx.1_Silent_p.A56A|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	56					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		CAAAGAATGCGAAGCAACCAG	0.423			NA							Prader-Willsyndrome				11	35					3.07112e-06	4.16145e-06	0.000978	1	0
HERC2	8924	broad.mit.edu	37	15	28465650	28465650	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:28465650C>T	uc001zbj.2	-	37	5899	c.5793G>A	c.(5791-5793)CTG>CTA	p.L1931L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1931	MIB/HERC2.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CAGCAGCCGGCAGCTCTGCCA	0.562			NA											40	122					0	0	0.00874	0	0
TRPM1	4308	broad.mit.edu	37	15	31324973	31324973	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:31324973G>T	uc001zfm.2	-	21	2933	c.2805C>A	c.(2803-2805)ATC>ATA	p.I935I	TRPM1_uc010azy.2_Silent_p.I842I|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	935	Helical; (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		ACCAGAAGATGATATCCACAC	0.483			NA											26	53					4.43304e-23	8.6397e-23	0.00632	1	0
TRPM1	4308	broad.mit.edu	37	15	31339443	31339443	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:31339443C>A	uc001zfm.2	-	14	1697	c.1569G>T	c.(1567-1569)CCG>CCT	p.P523P	TRPM1_uc010azy.2_Silent_p.P430P|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	523	Extracellular (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GGTAATCAGGCGGAAGGTTGC	0.547			NA											8	39					5.18039e-06	6.91726e-06	0.00308	1	0
AVEN	57099	broad.mit.edu	37	15	34295248	34295248	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:34295248G>T	uc001zhj.2	-	2	486	c.430C>A	c.(430-432)CTC>ATC	p.L144I	CHRM5_uc001zhk.1_Intron	NM_020371	NP_065104	Q9NQS1	AVEN_HUMAN	cell death regulator aven	144					anti-apoptosis|apoptosis	endomembrane system|intracellular|membrane|membrane fraction	protein binding			kidney(1)	1		all_lung(180;1.78e-08)		all cancers(64;1.66e-15)|GBM - Glioblastoma multiforme(113;1.42e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0359)		GAGCTAAGGAGGACACTGAAA	0.353			NA											10	33					2.61681e-11	4.25e-11	0.00245	1	0
DISP2	85455	broad.mit.edu	37	15	40657403	40657403	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:40657403G>A	uc001zlk.1	+	6	864	c.775G>A	c.(775-777)GCT>ACT	p.A259T		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	259					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CCAGGAGAGCGCTGTCCGGCC	0.597			NA											13	68					0	0	0.001368	0	0
RPAP1	26015	broad.mit.edu	37	15	41828728	41828728	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:41828728G>C	uc001zod.2	-	3	425	c.301C>G	c.(301-303)CAC>GAC	p.H101D		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	101						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GCAGTGATGTGCTGATCATGC	0.547			NA											11	60					0	0	0.001368	0	0
GOLGA6B	55889	broad.mit.edu	37	15	72954779	72954779	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:72954779T>A	uc010uks.1	+	11	1075	c.1034T>A	c.(1033-1035)ATG>AAG	p.M345K		NM_018652	NP_061122	A6NDN3	GOG6B_HUMAN	golgi autoantigen, golgin subfamily a, 6B	345	Potential.										0						CAGGAGGAGATGCTCCGAGAG	0.557			NA											95	145					0	0	0.00361	0	0
Unknown	0	broad.mit.edu	37	15	76074470	76074470	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:76074470A>G	uc010umm.1	+	8	649	c.572A>G	c.(571-573)CAG>CGG	p.Q191R	uc002bba.1_5'Flank					SubName: Full=cDNA FLJ59077, highly similar to Golgin subfamily A member 6;												NA						CGGTTACAGCAGACCATAAAG	0.577			NA											5	35					0	0	0.008291	0	0
BNC1	646	broad.mit.edu	37	15	83932483	83932483	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:83932483A>T	uc002bjt.1	-	4	1608	c.1520T>A	c.(1519-1521)ATA>AAA	p.I507K	BNC1_uc010uos.1_Missense_Mutation_p.I495K	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	507					epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GGAAGGGAGTATCCCAGGCGT	0.517			NA											18	44					0	0	0.007413	0	0
ACAN	176	broad.mit.edu	37	15	89400503	89400503	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr15:89400503G>C	uc010upo.1	+	12	5061	c.4687G>C	c.(4687-4689)GGG>CGG	p.G1563R	ACAN_uc010upp.1_Missense_Mutation_p.G1563R|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1563					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TTCTGAAGTAGGGACTGACCT	0.512			NA											41	43					0	0	0.005524	0	0
ABCC6P1	653190	broad.mit.edu	37	16	18603969	18603969	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:18603969G>A	uc002dfg.2	+	9	1136	c.936G>A	c.(934-936)CAG>CAA	p.Q312Q	ABCC6P1_uc010vam.1_Silent_p.Q255Q	NR_003569				SubName: Full=cDNA FLJ51267, highly similar to Multidrug resistance-associated protein 6;												0						TTGAGCAGCAGAACATGTACA	0.587			NA											9	28					0	0	0.006214	0	0
ACSM3	6296	broad.mit.edu	37	16	20781403	20781403	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:20781403T>C	uc002dhr.2	+	2	234	c.47T>C	c.(46-48)TTT>TCT	p.F16S	ACSM3_uc002dhq.2_Missense_Mutation_p.F16S|ACSM3_uc010vba.1_Missense_Mutation_p.F8S	NM_005622	NP_005613	Q53FZ2	ACSM3_HUMAN	SA hypertension-associated homolog isoform 1	16					regulation of blood pressure	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			ovary(1)	1						GCCAAGTGTTTTCAGCGCCTA	0.448			NA											80	47					0	0	0.00361	0	0
DNAH3	55567	broad.mit.edu	37	16	20990777	20990777	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:20990777G>T	uc010vbe.1	-	50	7951	c.7951C>A	c.(7951-7953)CCC>ACC	p.P2651T	DNAH3_uc010vbd.1_Missense_Mutation_p.P86T	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2651					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TAGGAGGTGGGGGTAACATAG	0.478			NA											21	78					1.87028e-06	2.57234e-06	0.001882	1	0
ASPHD1	253982	broad.mit.edu	37	16	29912884	29912884	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:29912884G>T	uc002dut.2	+	1	738	c.592G>T	c.(592-594)GCC>TCC	p.A198S	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_5'Flank|SEZ6L2_uc002dur.3_5'Flank|SEZ6L2_uc002duq.3_5'Flank|SEZ6L2_uc002dus.3_5'Flank|SEZ6L2_uc010vec.1_5'Flank|SEZ6L2_uc010ved.1_5'Flank|ASPHD1_uc002duu.3_RNA|ASPHD1_uc010bzi.2_RNA	NM_181718	NP_859069	Q5U4P2	ASPH1_HUMAN	aspartate beta-hydroxylase domain containing 1	198	Lumenal (Potential).				peptidyl-amino acid modification	integral to endoplasmic reticulum membrane	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peptide-aspartate beta-dioxygenase activity				0						CCTGCCTTCAGCCCCCTTTGT	0.667			NA											62	66					7.73544e-29	1.53369e-28	0.00361	1	0
ABCC11	85320	broad.mit.edu	37	16	48249175	48249175	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:48249175T>A	uc002eff.1	-	7	1382	c.1032A>T	c.(1030-1032)GAA>GAT	p.E344D	ABCC11_uc002efg.1_Missense_Mutation_p.E344D|ABCC11_uc002efh.1_Missense_Mutation_p.E344D|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	344	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AAGTGAGAACTTCACTGGTCA	0.448			NA							Cerumen_Type				6	64					0	0	0.001168	0	0
ABCC11	85320	broad.mit.edu	37	16	48249177	48249177	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:48249177C>A	uc002eff.1	-	7	1380	c.1030G>T	c.(1030-1032)GAA>TAA	p.E344*	ABCC11_uc002efg.1_Nonsense_Mutation_p.E344*|ABCC11_uc002efh.1_Nonsense_Mutation_p.E344*|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	344	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				GTGAGAACTTCACTGGTCACA	0.448			NA							Cerumen_Type				6	62					0.00116845	0.00144635	0.001168	1	0
NDRG4	65009	broad.mit.edu	37	16	58537747	58537747	+	Silent	SNP	C	C	A	rs145564006	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:58537747C>A	uc002eno.2	+	2	173	c.67C>A	c.(67-69)CGG>AGG	p.R23R	NDRG4_uc002enk.2_Silent_p.R55R|NDRG4_uc002enm.2_Silent_p.R75R|NDRG4_uc010vif.1_Silent_p.R55R|NDRG4_uc010cdk.2_Silent_p.R23R|NDRG4_uc010vig.1_Silent_p.R53R|NDRG4_uc010vih.1_5'UTR|NDRG4_uc010vii.1_Silent_p.R41R|NDRG4_uc002enp.2_Silent_p.R23R|NDRG4_uc002enq.1_5'Flank	NM_022910	NP_075061	Q9ULP0	NDRG4_HUMAN	NDRG family member 4 isoform 1	23					cell differentiation|cell growth|multicellular organismal development|response to stress	cytoplasm				skin(1)	1						TGTAGTGATCCGGGGCTCCCC	0.627			NA											22	20					1.85244e-09	2.85663e-09	0.00333	1	0
CALB2	794	broad.mit.edu	37	16	71423651	71423652	+	Splice_Site	DNP	GG	GG	TT			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:71423651_71423652GG>TT	uc002faa.3	+	11	770	c.700_splice	c.e11-1	p.E234_splice	CALB2_uc010vme.1_Splice_Site|CALB2_uc002fac.3_Splice_Site	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1								calcium ion binding				0		Ovarian(137;0.125)				GTATTTCCTAGGAAATGAATAT	0.52			NA											78	163					0	0	0.004672	0	0
PKD1L2	114780	broad.mit.edu	37	16	81145941	81145941	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:81145941C>A	uc002fgh.1	-	42	6811	c.6811G>T	c.(6811-6813)GCC>TCC	p.A2271S	PKD1L2_uc002fgf.1_Missense_Mutation_p.A71S|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2271	Helical; (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TAGCCAAGGGCGGCATCGGCT	0.532			NA											23	33					1.55795e-14	2.72343e-14	0.001882	1	0
CPNE7	27132	broad.mit.edu	37	16	89645307	89645307	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr16:89645307G>T	uc002fnp.2	+	3	530	c.400G>T	c.(400-402)GTT>TTT	p.V134F	CPNE7_uc002fnq.2_Intron	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	134					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		GAGAGTGTCTGTTGATGTGCT	0.542			NA											12	19					6.40141e-05	8.40071e-05	0.000978	1	0
ZNF594	84622	broad.mit.edu	37	17	5085550	5085550	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:5085550C>A	uc010cla.1	-	2	2158	c.2002G>T	c.(2002-2004)GCT>TCT	p.A668S		NM_032530	NP_115919	Q96JF6	ZN594_HUMAN	zinc finger protein 594	668	C2H2-type 20.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(1)	3						TGGTGTGTAGCAAGGTGTGAC	0.468			NA											24	44					1.10513e-12	1.86085e-12	0.002299	1	0
TEKT1	83659	broad.mit.edu	37	17	6718555	6718555	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:6718555C>T	uc002gdt.2	-	5	666	c.556G>A	c.(556-558)GAT>AAT	p.D186N	TEKT1_uc010vth.1_Missense_Mutation_p.D40N	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	186					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				AAGCAGATATCATCTATGGTC	0.478			NA											20	71					0	0	0.002299	0	0
NEURL4	84461	broad.mit.edu	37	17	7221650	7221650	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:7221650C>G	uc002gga.1	-	24	3897	c.3890G>C	c.(3889-3891)GGG>GCG	p.G1297A	GPS2_uc002gfx.1_5'Flank|NEURL4_uc002gfy.1_RNA|GPS2_uc002gfz.1_5'UTR|NEURL4_uc002ggb.1_Missense_Mutation_p.G1295A	NM_032442	NP_115818	Q96JN8	NEUL4_HUMAN	neuralized homolog 4 isoform 1	1297							protein binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACTGGCAGCCCCTGGCTCAGG	0.602			NA											49	73					0	0	0.00361	0	0
ALOXE3	59344	broad.mit.edu	37	17	8018264	8018264	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:8018264C>A	uc010cnr.2	-	5	916	c.546G>T	c.(544-546)CAG>CAT	p.Q182H	ALOXE3_uc002gka.2_Missense_Mutation_p.Q338H|ALOXE3_uc010vuo.1_Missense_Mutation_p.Q314H|ALOXE3_uc010vup.1_RNA	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	182	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						ACCTGTCACCCTGGTCTACAC	0.522			NA											65	141					3.83939e-23	7.54695e-23	0.00361	1	0
PFAS	5198	broad.mit.edu	37	17	8172508	8172508	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:8172508G>T	uc002gkr.2	+	28	4084	c.3943G>T	c.(3943-3945)GAT>TAT	p.D1315Y	PFAS_uc010vuv.1_Missense_Mutation_p.D891Y|PFAS_uc002gks.2_3'UTR	NM_012393	NP_036525	O15067	PUR4_HUMAN	phosphoribosylformylglycinamidine synthase	1315					'de novo' IMP biosynthetic process|glutamine metabolic process|purine base metabolic process	cytosol	ATP binding|phosphoribosylformylglycinamidine synthase activity|protein binding			ovary(2)|central_nervous_system(2)|pancreas(1)	5					L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	CCCTCCATTTGATACTCTGAC	0.642			NA											13	31					0.000151284	0.000197403	0.001855	1	0
MYH10	4628	broad.mit.edu	37	17	8455408	8455408	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:8455408T>C	uc002gll.2	-	8	941	c.845A>G	c.(844-846)CAT>CGT	p.H282R	MYH10_uc002glm.2_Missense_Mutation_p.H292R|MYH10_uc010cnx.2_Missense_Mutation_p.H291R|MYH10_uc010cny.1_RNA	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	282	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						GTAAAAGATATGAAAAGTACG	0.299			NA											5	17					0	0	0.001984	0	0
MYH1	4619	broad.mit.edu	37	17	10401191	10401191	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:10401191C>A	uc002gmo.2	-	31	4319	c.4225G>T	c.(4225-4227)GAA>TAA	p.E1409*	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1409	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TTCACAGCTTCTACATGTTCC	0.458			NA											8	37					0.000157383	0.000203047	0.00308	1	0
DNAH9	1770	broad.mit.edu	37	17	11666872	11666872	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:11666872G>C	uc002gne.2	+	36	7179	c.7111G>C	c.(7111-7113)GAG>CAG	p.E2371Q	DNAH9_uc010coo.2_Missense_Mutation_p.E1665Q	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2371					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGAAATTTATGAGCATTATTT	0.498			NA											21	38					0	0	0.001523	0	0
UBB	7314	broad.mit.edu	37	17	16285497	16285497	+	Silent	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:16285497A>G	uc002gpx.2	+	2	414	c.276A>G	c.(274-276)GAA>GAG	p.E92E	UBB_uc010vwe.1_Intron	NM_018955	NP_061828	P0CG47	UBB_HUMAN	ubiquitin B precursor	92	Ubiquitin-like 2.				activation of MAPK activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|anti-apoptosis|apoptosis|cellular membrane organization|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA repair|endosome transport|epidermal growth factor receptor signaling pathway|G1/S transition of mitotic cell cycle|I-kappaB kinase/NF-kappaB cascade|induction of apoptosis by extracellular signals|innate immune response|JNK cascade|M/G1 transition of mitotic cell cycle|mRNA metabolic process|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of type I interferon production|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|viral reproduction	cytosol|endocytic vesicle membrane|endosome membrane|nucleoplasm|plasma membrane	protein binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)		TCACCCTGGAAGTGGAGCCCA	0.557	Melanoma(163;1126 3406 34901)		NA											5	97					0	0	0.000602	0	0
PIGS	94005	broad.mit.edu	37	17	26881313	26881313	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:26881313C>T	uc002hbo.2	-	12	1966	c.1593G>A	c.(1591-1593)GTG>GTA	p.V531V	UNC119_uc002hbk.2_5'Flank|UNC119_uc002hbm.2_5'Flank|PIGS_uc002hbn.2_Silent_p.V523V|PIGS_uc010wap.1_Silent_p.V470V	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	531	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					GGAGGATGGGCACAGCCATAG	0.547			NA											24	39					0	0	0.005443	0	0
PIGS	94005	broad.mit.edu	37	17	26898184	26898184	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:26898184G>A	uc002hbo.2	-	2	430	c.57C>T	c.(55-57)GCC>GCT	p.A19A	PIGS_uc002hbn.2_Silent_p.A11A|PIGS_uc010wap.1_Intron	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	19	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					AGAAGAGGGCGGCGCGCTTGC	0.682			NA											11	25					0	0	0.001855	0	0
SEZ6	124925	broad.mit.edu	37	17	27285150	27285150	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:27285150C>T	uc002hdp.2	-	11	2311	c.2117G>A	c.(2116-2118)CGC>CAC	p.R706H	SEZ6_uc010crx.1_5'Flank|SEZ6_uc002hdm.2_RNA|SEZ6_uc010cry.1_Missense_Mutation_p.R706H|SEZ6_uc002hdq.1_Missense_Mutation_p.R581H	NM_178860	NP_849191	Q53EL9	SEZ6_HUMAN	seizure related 6 homolog isoform 1	706	Extracellular (Potential).					integral to membrane|plasma membrane				large_intestine(1)|central_nervous_system(1)	2	Lung NSC(42;0.0137)		Epithelial(11;4.73e-06)|all cancers(11;2.91e-05)|BRCA - Breast invasive adenocarcinoma(11;8.06e-05)|OV - Ovarian serous cystadenocarcinoma(11;0.111)			TGTGTCATTGCGGGGCACCTC	0.617			NA											14	42					0	0	0.003163	0	0
CPD	1362	broad.mit.edu	37	17	28747973	28747973	+	Missense_Mutation	SNP	G	G	A	rs147588955	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:28747973G>A	uc002hfb.1	+	3	1124	c.1109G>A	c.(1108-1110)CGT>CAT	p.R370H	CPD_uc010wbo.1_Missense_Mutation_p.R123H|CPD_uc010wbp.1_RNA	NM_001304	NP_001295	O75976	CBPD_HUMAN	carboxypeptidase D precursor	370	Extracellular (Potential).|Carboxypeptidase-like 1.				proteolysis	integral to membrane	metallocarboxypeptidase activity|serine-type carboxypeptidase activity|zinc ion binding			liver(1)|skin(1)	2						GAGAACAATCGTGAGTCTTTG	0.398			NA											10	27					0	0	0.006214	0	0
GSDMB	55876	broad.mit.edu	37	17	38062503	38062503	+	Missense_Mutation	SNP	T	T	C	rs35104165	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:38062503T>C	uc010cwj.2	-	7	754	c.749A>G	c.(748-750)GAT>GGT	p.D250G	GSDMB_uc010cwi.2_5'UTR|GSDMB_uc010cwk.2_RNA|GSDMB_uc010cwl.2_RNA|GSDMB_uc010cwm.2_RNA|GSDMB_uc002htg.2_Missense_Mutation_p.D228G|GSDMB_uc002hth.2_Missense_Mutation_p.D237G|GSDMB_uc010wem.1_Missense_Mutation_p.D241G	NM_001042471	NP_001035936	Q8TAX9	GSDMB_HUMAN	gasdermin B isoform 1	245	Potential.		D -> G (in a breast cancer sample; somatic mutation).			cytoplasm		p.D228G(2)		breast(1)|pancreas(1)	2						GTTTCTGGAATCCTCCGAACC	0.478			NA											6	71					0	0	0.001984	0	0
KRT40	125115	broad.mit.edu	37	17	39138696	39138696	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:39138696G>T	uc010cxh.1	-	5	711	c.550C>A	c.(550-552)CTT>ATT	p.L184I	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	184	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				AGCTGGCGAAGGGACAGTTCA	0.517			NA											34	57					1.30998e-17	2.41924e-17	0.005524	1	0
KRTAP1-5	83895	broad.mit.edu	37	17	39183212	39183212	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:39183212A>T	uc002hvu.2	-	1	243	c.196T>A	c.(196-198)TGT>AGT	p.C66S		NM_031957	NP_114163	Q9BYS1	KRA15_HUMAN	keratin associated protein 1.5	66	15 X 5 AA repeats of C-C-[QEPVRC]- [TPIVLE]-[SRHVP].					keratin filament					0		Breast(137;0.00043)	STAD - Stomach adenocarcinoma(17;0.000371)			CTGGTCTCACAGCAGCTTGGC	0.622			NA											18	52					0	0	0.007413	0	0
KRT31	3881	broad.mit.edu	37	17	39553599	39553599	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:39553599C>G	uc002hwn.2	-	1	246	c.193G>C	c.(193-195)GAC>CAC	p.D65H	KRT31_uc010cxn.2_Missense_Mutation_p.D65H	NM_002277	NP_002268	Q15323	K1H1_HUMAN	keratin 31	65	Coil 1A.|Rod.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000496)				GCCAGGCGGTCGTTCAGGAAC	0.617			NA											39	98					0	0	0.002522	0	0
G6PC	2538	broad.mit.edu	37	17	41063145	41063145	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:41063145C>A	uc002icb.1	+	5	855	c.776C>A	c.(775-777)GCC>GAC	p.A259D	G6PC_uc010whf.1_3'UTR	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	259	Helical; (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		ACACCCTTTGCCAGCCTCCTC	0.592			NA							Glycogen_Storage_Disease_type_Ia				15	32					0.00316338	0.00382276	0.003163	1	0
HEATR6	63897	broad.mit.edu	37	17	58144875	58144875	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:58144875G>A	uc002iyk.1	-	8	1175	c.1158C>T	c.(1156-1158)TTC>TTT	p.F386F	HEATR6_uc010ddk.1_5'Flank|HEATR6_uc010wos.1_Silent_p.F218F	NM_022070	NP_071353	Q6AI08	HEAT6_HUMAN	HEAT repeat containing 6	386	Poly-Ser.						binding			ovary(1)|skin(1)	2	all_cancers(5;2.25e-13)|Breast(5;4.84e-25)|all_neural(34;0.0878)|Medulloblastoma(34;0.0922)		BRCA - Breast invasive adenocarcinoma(1;5.93e-19)|Epithelial(12;7.59e-12)|all cancers(12;1.26e-10)			TGGAAGAACTGAAGGATGAGG	0.463			NA											21	48					0	0	0.00278	0	0
KCNH6	81033	broad.mit.edu	37	17	61615428	61615428	+	Missense_Mutation	SNP	C	C	A	rs34770814		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:61615428C>A	uc002jay.2	+	7	1584	c.1504C>A	c.(1504-1506)CTG>ATG	p.L502M	KCNH6_uc010wpl.1_Missense_Mutation_p.L379M|KCNH6_uc010wpm.1_Missense_Mutation_p.L502M|KCNH6_uc002jaz.1_Missense_Mutation_p.L449M	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	502	Helical; Name=Segment S6; (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	GCCCCCAGCCCTGATGTACGC	0.662			NA											10	18					7.48243e-07	1.05445e-06	0.006214	1	0
SCN4A	6329	broad.mit.edu	37	17	62020280	62020280	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:62020280C>T	uc002jds.1	-	23	4271	c.4194G>A	c.(4192-4194)GGG>GGA	p.G1398G		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1398	IV.|Helical; Name=S2 of repeat IV; (Potential).				muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GCACGCACTCCCCTGTGAAGA	0.517			NA											34	61					0	0	0.003755	0	0
PLEKHM1P	440456	broad.mit.edu	37	17	62796704	62796704	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:62796704G>A	uc002jew.3	-	6	1247	c.336C>T	c.(334-336)AAC>AAT	p.N112N	PLEKHM1P_uc002jev.3_RNA|PLEKHM1P_uc010wqe.1_Silent_p.N112N	NR_024386				RecName: Full=Putative pleckstrin homology domain-containing family M member 1P;												0						AGTACTGCACGTTCACCCACT	0.697			NA											16	32					0	0	0.00499	0	0
GPRC5C	55890	broad.mit.edu	37	17	72436210	72436211	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:72436210_72436211GG>TT	uc002jks.2	+	1	334_335	c.295_296GG>TT	c.(295-297)GGC>TTC	p.G99F	GPRC5C_uc002jkp.2_Missense_Mutation_p.G144F|GPRC5C_uc002jkq.2_Intron|GPRC5C_uc002jkr.2_Missense_Mutation_p.G111F|GPRC5C_uc002jkt.2_Missense_Mutation_p.G99F	NM_018653	NP_061123	Q9NQ84	GPC5C_HUMAN	G protein-coupled receptor family C, group 5,	99	Helical; Name=2; (Potential).					cytoplasmic vesicle membrane|integral to plasma membrane	G-protein coupled receptor activity|protein binding			ovary(2)|prostate(1)|central_nervous_system(1)|pancreas(1)	5						GGGGACCCTGGGCCTCTTCTGC	0.594			NA											33	69					0	0	0.004672	0	0
KIAA0802	23255	broad.mit.edu	37	18	8784761	8784761	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:8784761A>T	uc002knr.2	+	6	1793	c.1651A>T	c.(1651-1653)AGC>TGC	p.S551C	KIAA0802_uc002knq.2_Missense_Mutation_p.S551C|KIAA0802_uc010dkw.1_Missense_Mutation_p.S389C	NM_015210	NP_056025	Q9Y4B5	CC165_HUMAN	hypothetical protein LOC23255	902											0						AGAGTCCTCTAGCTTCCTCTC	0.607			NA											15	57					0	0	0.006122	0	0
CEP192	55125	broad.mit.edu	37	18	13056511	13056511	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:13056511G>T	uc010xac.1	+	19	4002	c.3922G>T	c.(3922-3924)GTG>TTG	p.V1308L	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.V833L|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_5'UTR|CEP192_uc002krs.1_Missense_Mutation_p.V1049L	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1308										ovary(4)|pancreas(1)	5						GCAGAACTCTGTGGCTGTGGG	0.512			NA											22	33					1.10513e-12	1.86085e-12	0.002299	1	0
B4GALT6	9331	broad.mit.edu	37	18	29205658	29205658	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:29205658C>A	uc002kwz.3	-	9	1365	c.1068G>T	c.(1066-1068)AGG>AGT	p.R356S	B4GALT6_uc010dma.2_Missense_Mutation_p.R317S|B4GALT6_uc010dmb.2_Missense_Mutation_p.R317S|B4GALT6_uc002kwy.3_RNA	NM_004775	NP_004766	Q9UBX8	B4GT6_HUMAN	beta-1,4-galactosyltransferase 6	356	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	metal ion binding				0			OV - Ovarian serous cystadenocarcinoma(10;0.00791)			GTATTTTTGGCCTATATATTA	0.358			NA											16	25					1.99824e-07	2.91462e-07	0.00499	1	0
KIAA1012	22878	broad.mit.edu	37	18	29447398	29447398	+	Silent	SNP	T	T	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:29447398T>G	uc002kxc.3	-	17	2794	c.2430A>C	c.(2428-2430)TCA>TCC	p.S810S	KIAA1012_uc002kxb.3_Silent_p.S756S|KIAA1012_uc002kxd.3_RNA	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	810					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						TTAAGAACTCTGAAATAACTT	0.264			NA											6	15					0	0	0.004482	0	0
SLC14A2	8170	broad.mit.edu	37	18	43204731	43204731	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:43204731C>T	uc010dnj.2	+	3	423	c.102C>T	c.(100-102)TCC>TCT	p.S34S	SLC14A2_uc002lbb.2_Silent_p.S34S|SLC14A2_uc002lbe.2_Silent_p.S34S	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	34						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CCTCGACATCCCCGGATACTC	0.572			NA											13	34					0	0	0.00245	0	0
SMAD2	4087	broad.mit.edu	37	18	45394791	45394791	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:45394791G>A	uc002lcy.2	-	5	806	c.558C>T	c.(556-558)ATC>ATT	p.I186I	SMAD2_uc002lcz.2_Silent_p.I186I|SMAD2_uc010xdc.1_Silent_p.I156I|SMAD2_uc010xdd.1_Silent_p.I156I	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	186					anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						GTTCTGTTAGGATCTCGGTGT	0.443			NA											14	18					0	0	0.003163	0	0
CDH19	28513	broad.mit.edu	37	18	64211367	64211367	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:64211367G>A	uc002lkc.1	-	7	1193	c.1055C>T	c.(1054-1056)GCT>GTT	p.A352V	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.A352V|CDH19_uc002lkd.2_Missense_Mutation_p.A352V	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	352	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				AGTGGTGGAAGCCTCAGTGTG	0.418			NA											5	28					0	0	0.000602	0	0
TMX3	54495	broad.mit.edu	37	18	66344377	66344377	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:66344377C>T	uc002lkf.2	-	16	1293	c.1158G>A	c.(1156-1158)CTG>CTA	p.L386L	TMX3_uc010xez.1_Silent_p.L245L	NM_019022	NP_061895	Q96JJ7	TMX3_HUMAN	thioredoxin domain containing 10 precursor	386	Helical; (Potential).				cell redox homeostasis|glycerol ether metabolic process	endoplasmic reticulum membrane|integral to membrane	electron carrier activity|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			skin(1)	1						TGATGACACCCAGTGGCAGGC	0.413			NA											32	56					0	0	0.001786	0	0
SALL3	27164	broad.mit.edu	37	18	76754025	76754025	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr18:76754025G>T	uc002lmt.2	+	2	2034	c.2034G>T	c.(2032-2034)CCG>CCT	p.P678P	SALL3_uc010dra.2_Silent_p.P285P	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	678					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TGACGGACCCGAACCAGTGCG	0.607			NA											6	10					4.096e-09	6.21181e-09	0.001168	1	0
ADAMTSL5	339366	broad.mit.edu	37	19	1506627	1506627	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:1506627C>A	uc002ltd.2	-	11	1520	c.1076G>T	c.(1075-1077)CGC>CTC	p.R359L	ADAMTSL5_uc010dsl.2_Missense_Mutation_p.R128L|ADAMTSL5_uc010xgq.1_Missense_Mutation_p.R369L	NM_213604	NP_998769	Q6ZMM2	ATL5_HUMAN	ADAMTS-like 5 precursor	359	NTR.					proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Acute lymphoblastic leukemia(61;5.61e-13)|all_hematologic(61;2.65e-08)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCGGTGGGCGCGGCCGCGGGT	0.662			NA											21	8					2.39556e-15	4.25259e-15	0.00278	1	0
ZNRF4	148066	broad.mit.edu	37	19	5455572	5455572	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:5455572C>T	uc002mca.3	+	1	147	c.70C>T	c.(70-72)CTG>TTG	p.L24L		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	24						integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GTCACTGCCTCTGAGCCACGC	0.662			NA											13	34					0	0	0.001368	0	0
ZNF878	729747	broad.mit.edu	37	19	12155620	12155620	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:12155620T>C	uc002mta.1	-	5	737	c.737A>G	c.(736-738)TAT>TGT	p.Y246C		NM_001080404	NP_001073873	C9JN71	ZN878_HUMAN	zinc finger protein 878	199	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CTTACATTCATAGGGTTTTTT	0.388			NA											5	125					0	0	0.000602	0	0
GIPC1	10755	broad.mit.edu	37	19	14591225	14591225	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:14591225C>A	uc002myt.2	-	6	817	c.547G>T	c.(547-549)GGG>TGG	p.G183W	GIPC1_uc002myu.2_Missense_Mutation_p.G183W|GIPC1_uc002myv.2_Missense_Mutation_p.G86W|GIPC1_uc002myw.2_Missense_Mutation_p.G86W|GIPC1_uc002myx.2_Missense_Mutation_p.G183W|GIPC1_uc002myy.2_Missense_Mutation_p.G86W	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	183	PDZ.				endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						AGGCTCTGCCCGTTAATGGCC	0.657	Pancreas(33;78 923 2910 41023 52850)		NA									OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	70					2.23348e-06	3.06268e-06	0.004007	1	0
NWD1	284434	broad.mit.edu	37	19	16890214	16890214	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:16890214G>A	uc002neu.3	+	12	3091	c.2669G>A	c.(2668-2670)GGC>GAC	p.G890D	NWD1_uc002net.3_Missense_Mutation_p.G755D|NWD1_uc002nev.3_Missense_Mutation_p.G684D			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	890	WD 2.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						ACCCAGGATGGCATCATGGCT	0.552			NA									OREG0025337	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	36	58					0	0	0.003271	0	0
LASS1	10715	broad.mit.edu	37	19	18989736	18989736	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:18989736C>T	uc002nkj.2	-	6	1085	c.1013G>A	c.(1012-1014)TGA>TAA	p.*338*	GDF1_uc002nki.1_Intron|LASS1_uc010ebx.2_Silent_p.*240*	NM_198207	NP_937850	P27544	CERS1_HUMAN	LAG1 homolog, ceramide synthase 1 isoform 2	338					ceramide biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|microsome	sphingosine N-acyltransferase activity				0						CCTCCACACTCACTCGGCTTT	0.642			NA											6	12					0	0	0.001168	0	0
ZNF536	9745	broad.mit.edu	37	19	30934662	30934662	+	Nonsense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:30934662G>T	uc002nsu.1	+	2	331	c.193G>T	c.(193-195)GAG>TAG	p.E65*	ZNF536_uc010edd.1_Nonsense_Mutation_p.E65*	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	65					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CGCATCCCTGGAGGAGAAGGC	0.677			NA											20	34					5.26018e-13	8.98941e-13	0.001882	1	0
HPN	3249	broad.mit.edu	37	19	35551631	35551631	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:35551631G>T	uc002nxq.1	+	10	966	c.721G>T	c.(721-723)GGG>TGG	p.G241W	HPN_uc002nxr.1_Missense_Mutation_p.G241W|HPN_uc002nxs.1_Missense_Mutation_p.G83W|HPN_uc010xsh.1_Missense_Mutation_p.G210W|HPN_uc002nxt.1_Missense_Mutation_p.G125W|LOC100128675_uc010xsi.1_Intron	NM_002151	NP_002142	P05981	HEPS_HUMAN	hepsin	241	Extracellular (Potential).|Peptidase S1.				cell growth|proteolysis	cytoplasm|integral to plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2	all_lung(56;5.38e-08)|Lung NSC(56;8.61e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)		Coagulation factor VIIa(DB00036)	GGTCTACCACGGGGGCTATCT	0.642			NA											16	61					8.60227e-14	1.48673e-13	0.004007	1	0
ZNF568	374900	broad.mit.edu	37	19	37441573	37441573	+	Silent	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:37441573A>T	uc002ofc.2	+	7	2033	c.1518A>T	c.(1516-1518)GTA>GTT	p.V506V	ZNF568_uc010efg.2_Intron|ZNF568_uc010xtn.1_Intron|ZNF568_uc002ofd.2_Silent_p.V430V|ZNF568_uc010efe.2_Silent_p.V430V|ZNF568_uc010eff.1_Intron	NM_198539	NP_940941	Q3ZCX4	ZN568_HUMAN	zinc finger protein 568	506	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			CATGTACAGTATGTGGAAAAG	0.383			NA											15	47					0	0	0.004007	0	0
PAPL	390928	broad.mit.edu	37	19	39592142	39592142	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:39592142C>A	uc002oki.2	+	11	1352	c.1078C>A	c.(1078-1080)CCG>ACG	p.P360T	PAPL_uc010egl.2_Silent_p.T318T	NM_001004318	NP_001004318	Q6ZNF0	PAPL_HUMAN	iron/zinc purple acid phosphatase-like protein	360						extracellular region	acid phosphatase activity|metal ion binding				0						CTACACCAACCCGCGAGGGCC	0.527			NA											12	13					0.00316338	0.00382276	0.003163	1	0
FCGBP	8857	broad.mit.edu	37	19	40420076	40420076	+	Missense_Mutation	SNP	G	G	T	rs145294097		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:40420076G>T	uc002omp.3	-	6	2926	c.2918C>A	c.(2917-2919)ACG>AAG	p.T973K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	973	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCCAAAGTCCGTGCGCACGAC	0.587			NA											10	35					0.000442599	0.000561525	0.006214	1	0
SULT2A1	6822	broad.mit.edu	37	19	48374763	48374763	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:48374763C>A	uc002phr.2	-	6	947	c.807G>T	c.(805-807)TTG>TTT	p.L269F		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	269					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		TCTCTTGGAACAATTTATCAA	0.443			NA											21	51					6.44725e-10	1.01125e-09	0.002299	1	0
TSKS	60385	broad.mit.edu	37	19	50245190	50245190	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:50245190G>T	uc002ppm.2	-	9	1460	c.1449C>A	c.(1447-1449)GGC>GGA	p.G483G		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	483							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		CAGGAGTCAGGCCCCTCTGCT	0.592			NA											17	40					1.56452e-12	2.60564e-12	0.007413	1	0
ASPDH	554235	broad.mit.edu	37	19	51015483	51015483	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:51015483A>T	uc010enz.2	-	6	780	c.718T>A	c.(718-720)TTT>ATT	p.F240I	JOSD2_uc002psn.1_5'Flank|JOSD2_uc002pso.1_5'Flank|JOSD2_uc002psp.1_5'Flank|JOSD2_uc002psq.1_5'Flank|ASPDH_uc002psr.3_Missense_Mutation_p.F135I	NM_001114598	NP_001108070	A6ND91	ASPD_HUMAN	aspartate dehydrogenase isoform 1	240					NAD biosynthetic process|NADP catabolic process		aspartate dehydrogenase activity|NADP binding				0						TGCACAGCAAAGCTTCGGCCC	0.692			NA											4	20					0	0	0.000602	0	0
IGLON5	402665	broad.mit.edu	37	19	51826946	51826947	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:51826946_51826947GG>TT	uc002pwc.2	+	3	189_190	c.189_190GG>TT	c.(187-192)GTGGCC>GTTTCC	p.A64S		NM_001101372	NP_001094842	A6NGN9	IGLO5_HUMAN	IgLON family member 5 precursor	64	Ig-like C2-type 1.					extracellular region					0						TGACCCGCGTGGCCTGGCTGAA	0.639			NA											7	27					0	0	0.004672	0	0
PRKCG	5582	broad.mit.edu	37	19	54407997	54407997	+	Splice_Site	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:54407997G>T	uc002qcq.1	+	16	2046	c.1764_splice	c.e16+1	p.G588_splice	PRKCG_uc010yeg.1_Splice_Site_p.G588_splice|PRKCG_uc010yeh.1_Intron	NM_002739	NP_002730	P05129	KPCG_HUMAN	protein kinase C, gamma						activation of phospholipase C activity|cell death|intracellular signal transduction|negative regulation of protein catabolic process|negative regulation of protein ubiquitination|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of mismatch repair|synaptic transmission	cytosol	ATP binding|protein kinase C activity|zinc ion binding			lung(4)|ovary(2)|pancreas(2)|large_intestine(1)	9	all_cancers(19;0.0462)|all_epithelial(19;0.0258)|all_lung(19;0.185)|Ovarian(34;0.19)|Lung NSC(19;0.218)			GBM - Glioblastoma multiforme(134;0.0521)		CTGCAAGGGGGTGAGAGCCCC	0.473			NA											4	6					0.000602214	0.000755655	0.000602	1	0
VSTM1	284415	broad.mit.edu	37	19	54561782	54561782	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:54561782C>T	uc002qcw.3	-	3	309	c.133G>A	c.(133-135)GTG>ATG	p.V45M	VSTM1_uc010erb.2_RNA|VSTM1_uc002qcx.3_Missense_Mutation_p.V45M	NM_198481	NP_940883	Q6UX27	VSTM1_HUMAN	V-set and transmembrane domain containing 1	45	Ig-like V-type.					integral to membrane					0	all_cancers(19;0.0128)|all_epithelial(19;0.00564)|all_lung(19;0.031)|Lung NSC(19;0.0358)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.165)		TTCAGGGTCACATTGCTCTCG	0.522			NA											15	86					0	0	0.00245	0	0
NLRP4	147945	broad.mit.edu	37	19	56390295	56390295	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:56390295C>A	uc002qmd.3	+	9	3254	c.2832C>A	c.(2830-2832)GCC>GCA	p.A944A	NLRP4_uc002qmf.2_Silent_p.A869A|NLRP4_uc010etf.2_Silent_p.A719A	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	944							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		TCTGTGAGGCCCTGAGACACC	0.592			NA											15	25					6.31663e-08	9.39291e-08	0.003163	1	0
GALP	85569	broad.mit.edu	37	19	56691994	56691994	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:56691994C>T	uc002qmo.1	+	3	209	c.127C>T	c.(127-129)CTG>TTG	p.L43L	GALP_uc010eti.2_Intron	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	43					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		TGGCTACCTTCTGGGTCCCGG	0.592			NA											13	31					0	0	0.001855	0	0
PEG3	5178	broad.mit.edu	37	19	57326879	57326879	+	Nonsense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:57326879G>T	uc002qnu.2	-	7	3282	c.2931C>A	c.(2929-2931)TGC>TGA	p.C977*	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Nonsense_Mutation_p.C948*|PEG3_uc002qnv.2_Nonsense_Mutation_p.C977*|PEG3_uc002qnw.2_Nonsense_Mutation_p.C853*|PEG3_uc002qnx.2_Nonsense_Mutation_p.C851*|PEG3_uc010etr.2_Nonsense_Mutation_p.C977*	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	977	C2H2-type 5.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TATGAGCAAAGCACTCCCCAC	0.483			NA											12	92					2.27111e-07	3.28129e-07	0.001368	1	0
ZNF460	10794	broad.mit.edu	37	19	57803456	57803456	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:57803456G>C	uc002qog.2	+	3	1869	c.1547G>C	c.(1546-1548)AGC>ACC	p.S516T	ZNF460_uc010ygv.1_Missense_Mutation_p.S475T	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	516					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TCTTGTGAGAGCACAGATCTC	0.527			NA											13	65					0	0	0.001368	0	0
ZNF551	90233	broad.mit.edu	37	19	58199379	58199379	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:58199379G>C	uc002qpw.3	+	3	1911	c.1688G>C	c.(1687-1689)AGA>ACA	p.R563T	ZNF551_uc002qpv.3_Missense_Mutation_p.R506T|ZNF776_uc002qpx.2_Intron	NM_138347	NP_612356	Q7Z340	ZN551_HUMAN	zinc finger protein 551	579	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CAACACCAGAGAGTTCACACT	0.453			NA											8	77					0	0	0.00308	0	0
MYT1L	23040	broad.mit.edu	37	2	1914044	1914045	+	Missense_Mutation	DNP	GG	GG	CC			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:1914044_1914045GG>CC	uc002qxe.2	-	13	2611_2612	c.1784_1785CC>GG	c.(1783-1785)TCC>TGG	p.S595W	MYT1L_uc002qxd.2_Missense_Mutation_p.S593W|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	595					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GGCTGGACTTGGACACGTCGCA	0.614			NA											10	14					0	0	0.004672	0	0
FAM49A	81553	broad.mit.edu	37	2	16742303	16742303	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:16742303C>G	uc010exm.1	-	8	813	c.665G>C	c.(664-666)TGC>TCC	p.C222S	FAM49A_uc002rck.1_Missense_Mutation_p.C222S	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	222						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			TGTGCTGAGGCAGTCTGTGGT	0.428			NA											15	43					0	0	0.006122	0	0
CLIP4	79745	broad.mit.edu	37	2	29366763	29366763	+	Silent	SNP	G	G	A	rs144223606	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:29366763G>A	uc002rmv.2	+	7	1076	c.837G>A	c.(835-837)ACG>ACA	p.T279T	CLIP4_uc002rmu.2_Silent_p.T279T|CLIP4_uc010ezm.1_Silent_p.T279T|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Silent_p.T261T	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	279										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					CAATGCTTACGTCACTTGGCC	0.463			NA											7	182					0	0	0.001984	0	0
LTBP1	4052	broad.mit.edu	37	2	33498809	33498809	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:33498809G>A	uc002ros.2	+	16	2707	c.2707G>A	c.(2707-2709)GAG>AAG	p.E903K	LTBP1_uc002rot.2_Missense_Mutation_p.E577K|LTBP1_uc002rou.2_Missense_Mutation_p.E576K|LTBP1_uc002rov.2_Missense_Mutation_p.E523K|LTBP1_uc010ymz.1_Missense_Mutation_p.E576K|LTBP1_uc010yna.1_Missense_Mutation_p.E523K	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	902	EGF-like 4; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				TATATGCTACGAGGGCTACAG	0.348			NA											8	14					0	0	0.004482	0	0
NRXN1	9378	broad.mit.edu	37	2	50724812	50724812	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:50724812G>T	uc010fbq.2	-	14	4135	c.2658C>A	c.(2656-2658)AAC>AAA	p.N886K	NRXN1_uc002rxb.3_Missense_Mutation_p.N518K|NRXN1_uc002rxe.3_Missense_Mutation_p.N846K|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	212	Extracellular (Potential).|Laminin G-like.				angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CAGTCTCTATGTTATGGAACT	0.403			NA											26	50					4.43304e-23	8.6397e-23	0.00632	1	0
CYP26B1	56603	broad.mit.edu	37	2	72360350	72360350	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:72360350G>T	uc002sih.1	-	5	948	c.948C>A	c.(946-948)CCC>CCA	p.P316P	CYP26B1_uc010yra.1_Silent_p.P299P|CYP26B1_uc010yrb.1_Silent_p.P241P	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	316					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						CCAGCACAGTGGGGTGCTTCA	0.657			NA											7	26					0.00198382	0.0024229	0.001984	1	0
CYP26B1	56603	broad.mit.edu	37	2	72362006	72362006	+	Nonsense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:72362006T>A	uc002sih.1	-	4	745	c.745A>T	c.(745-747)AAG>TAG	p.K249*	CYP26B1_uc010yra.1_Nonsense_Mutation_p.K232*|CYP26B1_uc010yrb.1_Nonsense_Mutation_p.K174*	NM_019885	NP_063938	Q9NR63	CP26B_HUMAN	cytochrome P450, family 26, subfamily b,	249					cell fate determination|embryonic limb morphogenesis|male meiosis|negative regulation of retinoic acid receptor signaling pathway|proximal/distal pattern formation|retinoic acid catabolic process|spermatogenesis|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			skin(2)	2						CGGATGGCCTTCTCCAGCCCC	0.612			NA											10	55					0	0	0.001855	0	0
REG1A	5967	broad.mit.edu	37	2	79350037	79350037	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:79350037G>T	uc002snz.2	+	5	495	c.392G>T	c.(391-393)AGT>ATT	p.S131I	REG1A_uc010ysd.1_Missense_Mutation_p.S131I	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	131	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						GCCCCAAGCAGTGTTAATCCT	0.577			NA											36	84					5.04308e-16	9.02238e-16	0.00623	1	0
CKAP2L	150468	broad.mit.edu	37	2	113514765	113514765	+	Silent	SNP	G	G	C	rs145362538		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:113514765G>C	uc002tie.2	-	4	262	c.183C>G	c.(181-183)ACC>ACG	p.T61T	CKAP2L_uc002tif.2_5'UTR|CKAP2L_uc010yxp.1_Intron|CKAP2L_uc010yxq.1_5'UTR	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	61						centrosome					0						CAACATGGTTGGTAACATCAT	0.353			NA											10	134					0	0	0.001368	0	0
LRP1B	53353	broad.mit.edu	37	2	141130675	141130675	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:141130675T>A	uc002tvj.1	-	69	11642	c.10670A>T	c.(10669-10671)CAG>CTG	p.Q3557L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3557	Extracellular (Potential).|LDL-receptor class A 27.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACACCGGAACTGATCTTTGGA	0.368	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			27	38					0	0	0.005443	0	0
ACVR1C	130399	broad.mit.edu	37	2	158406824	158406824	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:158406824C>T	uc002tzk.3	-	4	868	c.625G>A	c.(625-627)GTG>ATG	p.V209M	ACVR1C_uc002tzl.3_Missense_Mutation_p.V129M|ACVR1C_uc010fof.2_Intron|ACVR1C_uc010foe.2_Missense_Mutation_p.V159M	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	209	ATP (By similarity).|Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						CCATGCCACACCTCACCAAAT	0.438			NA											19	117					0	0	0.007413	0	0
CDCA7	83879	broad.mit.edu	37	2	174231031	174231031	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:174231031C>T	uc002uid.1	+	7	950	c.819C>T	c.(817-819)TGC>TGT	p.C273C	CDCA7_uc002uic.1_Silent_p.C352C|CDCA7_uc010zej.1_Silent_p.C308C|CDCA7_uc010zek.1_Silent_p.C231C	NM_145810	NP_665809	Q9BWT1	CDCA7_HUMAN	cell division cycle associated 7 isoform 2	273	Mediates transcriptional activity.				regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.116)			GTCATCAATGCCGTCAGAAGA	0.433			NA											20	51					0	0	0.001523	0	0
SPHKAP	80309	broad.mit.edu	37	2	228883255	228883255	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:228883255G>A	uc002vpq.2	-	7	2362	c.2315C>T	c.(2314-2316)TCT>TTT	p.S772F	SPHKAP_uc002vpp.2_Missense_Mutation_p.S772F|SPHKAP_uc010zlx.1_Missense_Mutation_p.S772F	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	772						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GCTAAGTGGAGAGCTGCTGGA	0.502			NA											25	91					0	0	0.004656	0	0
ALPI	248	broad.mit.edu	37	2	233322984	233322984	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr2:233322984C>T	uc002vst.3	+	9	1126	c.1049C>T	c.(1048-1050)GCG>GTG	p.A350V	ALPI_uc002vsu.3_Missense_Mutation_p.A261V	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	350					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding	p.A350V(1)		central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		CTCACTGAGGCGGTCATGTTC	0.627			NA											14	38					0	0	0.00245	0	0
JAG1	182	broad.mit.edu	37	20	10623158	10623158	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr20:10623158G>C	uc002wnw.2	-	21	3066	c.2550C>G	c.(2548-2550)CAC>CAG	p.H850Q	JAG1_uc010gcd.1_Missense_Mutation_p.H408Q	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	850	Extracellular (Potential).|EGF-like 16; calcium-binding (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						TGGCACCACTGTGCCCTGGAG	0.537			NA							Alagille_Syndrome				3	27					0	0	0.004672	0	0
DOK5	55816	broad.mit.edu	37	20	53260108	53260108	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr20:53260108C>A	uc002xwy.2	+	7	1067	c.847C>A	c.(847-849)CGC>AGC	p.R283S	DOK5_uc010gin.2_Missense_Mutation_p.R175S|DOK5_uc002xwz.2_Missense_Mutation_p.R145S	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	283							insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			ACAGCTCTACCGCTTGCAAGG	0.662			NA											10	29					1.58986e-06	2.19325e-06	0.008291	1	0
TAF4	6874	broad.mit.edu	37	20	60581652	60581652	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr20:60581652C>T	uc002ybs.2	-	7	2137	c.2137G>A	c.(2137-2139)GTG>ATG	p.V713M		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	713					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			GCACTGGTCACGGTGGCCGCC	0.726			NA											9	12					0	0	0.004482	0	0
OPRL1	4987	broad.mit.edu	37	20	62729200	62729200	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr20:62729200G>T	uc002yic.2	+	4	681	c.279G>T	c.(277-279)CTG>CTT	p.L93L	OPRL1_uc002yid.2_Silent_p.L93L|OPRL1_uc002yif.3_Silent_p.L88L	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	93	Helical; Name=2; (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					TCTTTAACCTGGCCCTGGCCG	0.572			NA											47	94					4.0306e-16	7.23927e-16	0.00361	1	0
GCFC1	94104	broad.mit.edu	37	21	34123457	34123457	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr21:34123457C>A	uc002yqn.2	-	9	1770	c.1580G>T	c.(1579-1581)CGT>CTT	p.R527L	GCFC1_uc002yql.2_Missense_Mutation_p.R36L|GCFC1_uc002yqm.2_Missense_Mutation_p.R21L|GCFC1_uc002yqo.2_RNA|GCFC1_uc002yqp.2_Missense_Mutation_p.R527L	NM_016631	NP_057715	Q9Y5B6	GCFC1_HUMAN	GC-rich sequence DNA-binding factor candidate	527						cytosol|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2						TGCAATGCGACGTTTTGCATG	0.463			NA											10	41					0.00829132	0.00988912	0.008291	1	0
KRTAP12-2	353323	broad.mit.edu	37	21	46086478	46086478	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr21:46086478C>T	uc002zfu.2	-	1	367	c.326G>A	c.(325-327)AGC>AAC	p.S109N	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181684	NP_859012	P59991	KR122_HUMAN	keratin associated protein 12-2	109	23 X 5 AA approximate repeats.|18.					keratin filament					0						AGGCCTGCAGCTCACAGGCAC	0.642			NA											11	63					0	0	0.001855	0	0
KREMEN1	83999	broad.mit.edu	37	22	29521313	29521313	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr22:29521313C>T	uc011akm.1	+	5	553	c.540C>T	c.(538-540)TAC>TAT	p.Y180Y	KREMEN1_uc003ael.2_Silent_p.Y180Y|KREMEN1_uc011akn.1_Silent_p.Y63Y	NM_032045	NP_114434	Q96MU8	KREM1_HUMAN	kringle-containing transmembrane protein 1	178	Extracellular (Potential).|WSC.				cell communication|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane|membrane fraction	protein binding			ovary(3)|lung(2)	5						ACTGGAAGTACGGGGAGGCAG	0.527			NA											54	74					0	0	0.00361	0	0
SLC5A1	6523	broad.mit.edu	37	22	32498113	32498113	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr22:32498113C>T	uc003amc.2	+	13	1786	c.1554C>T	c.(1552-1554)CCC>CCT	p.P518P	SLC5A1_uc011alz.1_Silent_p.P391P	NM_000343	NP_000334	P13866	SC5A1_HUMAN	solute carrier family 5 (sodium/glucose	518	Extracellular (Potential).				carbohydrate metabolic process	integral to plasma membrane	glucose:sodium symporter activity|protein binding			skin(1)	1						GCAACTGTCCCACGATTATCT	0.488			NA											4	54					0	0	0.000248	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45110519	45110519	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr22:45110519C>A	uc003bfd.2	+	2	455	c.183C>A	c.(181-183)GAC>GAA	p.D61E	PRR5_uc003bew.1_Missense_Mutation_p.D52E|PRR5_uc003bex.1_5'UTR|PRR5_uc010gzt.1_Missense_Mutation_p.D84E|PRR5_uc010gzu.1_Intron|PRR5_uc003bey.1_Missense_Mutation_p.D52E|PRR5_uc003bez.1_5'UTR|PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.D61E|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.D52E|PRR5_uc003bfa.1_5'UTR|PRR5_uc003bfb.1_Missense_Mutation_p.D61E|PRR5_uc003bfe.1_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						GGCTGCCCGACCAGGAGCTCT	0.647			NA											13	45					6.72482e-11	1.06206e-10	0.003163	1	0
CELSR1	9620	broad.mit.edu	37	22	46762935	46762935	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr22:46762935C>A	uc003bhw.1	-	29	8160	c.8160G>T	c.(8158-8160)AAG>AAT	p.K2720N		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	2720	Cytoplasmic (Potential).				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		CCAGGTGCAGCTTCCTCCCGC	0.706			NA									OREG0026655	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	11					1.12685e-05	1.49594e-05	0.004482	1	0
CHL1	10752	broad.mit.edu	37	3	424181	424181	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:424181A>T	uc003bou.2	+	17	2226	c.1955A>T	c.(1954-1956)AAC>ATC	p.N652I	CHL1_uc003bot.2_Missense_Mutation_p.N668I|CHL1_uc003bow.1_Missense_Mutation_p.N652I|CHL1_uc011asi.1_Missense_Mutation_p.N668I|uc003box.1_Intron	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	652	Fibronectin type-III 1.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		TTTGAAGGAAACAAAGAAGAG	0.363			NA											15	47					0	0	0.004007	0	0
GRM7	2917	broad.mit.edu	37	3	6903419	6903419	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:6903419C>T	uc003bqm.2	+	1	618	c.344C>T	c.(343-345)GCG>GTG	p.A115V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.A115V|GRM7_uc003bql.2_Missense_Mutation_p.A115V	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	115	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GACACTTACGCGCTCGAACAG	0.607			NA											4	30					0	0	0.000248	0	0
COLQ	8292	broad.mit.edu	37	3	15512054	15512054	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:15512054G>T	uc003bzx.2	-	11	832	c.706C>A	c.(706-708)CGA>AGA	p.R236R	COLQ_uc003bzv.2_Silent_p.R226R|COLQ_uc003bzz.2_Silent_p.R227R|COLQ_uc010heo.2_Silent_p.R202R|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_Silent_p.R95R|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	236	Heparan sulfate proteoglycan binding (Potential).|Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						TGCTTGCCTCGTTTTCCTGGT	0.552			NA											35	120					1.36161e-19	2.56633e-19	0.004289	1	0
NEK10	152110	broad.mit.edu	37	3	27332782	27332782	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:27332782C>A	uc003cdt.1	-	19	1850	c.1576G>T	c.(1576-1578)GGA>TGA	p.G526*	NEK10_uc003cds.1_5'UTR	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	526	ATP (By similarity).|Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						GCTCCACTTCCAAGATGATCC	0.403			NA											17	20					2.94398e-08	4.40635e-08	0.007413	1	0
EOMES	8320	broad.mit.edu	37	3	27758588	27758588	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:27758588C>A	uc003cdx.2	-	6	2034	c.2034G>T	c.(2032-2034)GGG>GGT	p.G678G	EOMES_uc003cdy.3_Silent_p.G697G|EOMES_uc010hfn.2_3'UTR|EOMES_uc011axc.1_Silent_p.G402G	NM_005442	NP_005433	O95936	EOMES_HUMAN	eomesodermin	678	Required for transcription activation (By similarity).				CD8-positive, alpha-beta T cell differentiation involved in immune response|cell differentiation involved in embryonic placenta development|endoderm formation|mesoderm formation|mesodermal to mesenchymal transition involved in gastrulation|positive regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|breast(1)	4						AAGCATAATACCCTCCCATGC	0.368			NA											7	54					0.00198382	0.0024229	0.001984	1	0
GOLGA4	2803	broad.mit.edu	37	3	37360619	37360619	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:37360619G>C	uc003cgv.2	+	12	1783	c.1479G>C	c.(1477-1479)GAG>GAC	p.E493D	GOLGA4_uc010hgr.1_Intron|GOLGA4_uc003cgw.2_Missense_Mutation_p.E515D|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.E374D	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	493	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						CCAGAAAAGAGCAGGAACTGA	0.383			NA											13	29					0	0	0.001368	0	0
SCN10A	6336	broad.mit.edu	37	3	38797307	38797307	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:38797307C>T	uc003ciq.2	-	10	1433	c.1433G>A	c.(1432-1434)CGC>CAC	p.R478H		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	478					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	AGGATCAGAGCGGGGTGATTT	0.274			NA											11	172					0	0	0.001368	0	0
CYP8B1	1582	broad.mit.edu	37	3	42917134	42917135	+	Missense_Mutation	DNP	GC	GC	TT	rs149860457		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	GC	GC	-	-	GC	GC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:42917134_42917135GC>TT	uc003cmh.2	-	1	499_500	c.174_175GC>AA	c.(172-177)AAGCGC>AAAAGC	p.R59S	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Missense_Mutation_p.R59S	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	59					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		GTCCTCATGCGCTTCAGAAATT	0.569			NA											17	27					0	0	0.004672	0	0
HTR1F	3355	broad.mit.edu	37	3	88040472	88040472	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:88040472C>T	uc003dqr.2	+	2	731	c.573C>T	c.(571-573)TAC>TAT	p.Y191Y		NM_000866	NP_000857	P30939	5HT1F_HUMAN	5-hydroxytryptamine (serotonin) receptor 1F	191	Helical; Name=5; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	serotonin binding|serotonin receptor activity			ovary(3)	3	all_cancers(8;0.147)	Lung NSC(201;0.0283)		LUSC - Lung squamous cell carcinoma(29;0.00353)|Lung(72;0.00664)	Eletriptan(DB00216)|Naratriptan(DB00952)|Rizatriptan(DB00953)|Sumatriptan(DB00669)|Zolmitriptan(DB00315)	GAGCTTTCTACATCCCACTGG	0.413			NA											13	24					0	0	0.001368	0	0
EPHA6	285220	broad.mit.edu	37	3	97167415	97167415	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:97167415C>A	uc010how.1	+	7	1778	c.1735C>A	c.(1735-1737)CAT>AAT	p.H579N	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_5'UTR|EPHA6_uc003drs.3_5'UTR|EPHA6_uc003drr.3_5'UTR|EPHA6_uc003drt.2_5'UTR|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	484	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						CCCCCAGGAACATGAGCAGCT	0.423			NA											15	57					0.00244969	0.00297602	0.00245	1	0
OR5H6	79295	broad.mit.edu	37	3	97984019	97984019	+	Silent	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:97984019A>T	uc003dsi.1	+	1	891	c.891A>T	c.(889-891)ATA>ATT	p.I297I		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	297	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						ACACTGTCATAGTTCCTTTAT	0.378			NA											21	30					0	0	0.004656	0	0
COL6A6	131873	broad.mit.edu	37	3	130290003	130290003	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:130290003C>A	uc010htl.2	+	6	2774	c.2743C>A	c.(2743-2745)CTC>ATC	p.L915I		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	915	VWFA 5.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						CCCCCAAGTCCTCATTGTGAT	0.562			NA											17	15					0.00400662	0.00482904	0.004007	1	0
TM4SF18	116441	broad.mit.edu	37	3	149040216	149040216	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:149040216T>A	uc003exa.2	-	5	555	c.418A>T	c.(418-420)ACA>TCA	p.T140S		NM_138786	NP_620141	Q96CE8	T4S18_HUMAN	transmembrane 4 L six family member 18	140	Extracellular (Potential).					integral to membrane				ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			CTAGAATCTGTAAGGAAACTG	0.398			NA											7	22					0	0	0.006214	0	0
CCDC39	339829	broad.mit.edu	37	3	180334315	180334315	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:180334315A>G	uc010hxe.2	-	18	2690	c.2575T>C	c.(2575-2577)TAC>CAC	p.Y859H	CCDC39_uc003fkn.2_RNA|TTC14_uc003fkm.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39	859					axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			TGTTGAAAGTATGTTTGAAGG	0.279			NA											3	9					0	0	0.004672	0	0
SST	6750	broad.mit.edu	37	3	187387016	187387016	+	Missense_Mutation	SNP	G	G	A	rs149673471		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:187387016G>A	uc003frn.2	-	2	310	c.188C>T	c.(187-189)ACG>ATG	p.T63M		NM_001048	NP_001039	P61278	SMS_HUMAN	somatostatin preproprotein	63					digestion|G-protein coupled receptor protein signaling pathway|induction of apoptosis by hormones|negative regulation of cell proliferation|response to nutrient|synaptic transmission	extracellular space	hormone activity			pancreas(1)	1	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.00444)	Bromocriptine(DB01200)|Cysteamine(DB00847)	ATCATTCTCCGTCTGGTTGGG	0.517			NA											30	200					0	0	0.002445	0	0
ACAP2	23527	broad.mit.edu	37	3	195022774	195022774	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:195022774C>A	uc003fun.3	-	14	1487	c.1246G>T	c.(1246-1248)GAC>TAC	p.D416Y		NM_012287	NP_036419	Q15057	ACAP2_HUMAN	centaurin, beta 2	416	Arf-GAP.|C4-type.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)	2						AGGCCACAGTCACAACAGCTG	0.542			NA											36	91					2.51541e-25	4.96577e-25	0.004878	1	0
LRRC33	375387	broad.mit.edu	37	3	196387130	196387130	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:196387130G>C	uc003fwv.2	+	3	720	c.616G>C	c.(616-618)GAG>CAG	p.E206Q		NM_198565	NP_940967	Q86YC3	LRC33_HUMAN	leucine rich repeat containing 33 precursor	206	Extracellular (Potential).|LRR 7.					integral to membrane				ovary(2)|central_nervous_system(1)	3	all_cancers(143;8.88e-09)|Ovarian(172;0.0634)|Breast(254;0.135)		Epithelial(36;1.9e-23)|all cancers(36;1.76e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.5e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00326)		CGGCCTGGCTGAGCTGAGGCA	0.632			NA											14	26					0	0	0.003163	0	0
ZNF721	170960	broad.mit.edu	37	4	436078	436078	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:436078T>A	uc003gag.2	-	3	2869	c.2178A>T	c.(2176-2178)AAA>AAT	p.K726N	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.K758N|ZNF721_uc010ibe.2_Missense_Mutation_p.K714N	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	726						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						GATCTTCACATTTGTAGGGTT	0.393			NA											8	21					0	0	0.004482	0	0
ZFYVE28	57732	broad.mit.edu	37	4	2307147	2307147	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:2307147G>A	uc003gex.1	-	8	1239	c.920C>T	c.(919-921)GCG>GTG	p.A307V	ZFYVE28_uc011bvk.1_Missense_Mutation_p.A237V|ZFYVE28_uc011bvl.1_Missense_Mutation_p.A277V|ZFYVE28_uc003gew.1_Missense_Mutation_p.A193V	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	307					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						GAGGGCAGGCGCCAGGGCAGC	0.657			NA											13	33					0	0	0.00245	0	0
SLIT2	9353	broad.mit.edu	37	4	20490581	20490581	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:20490581C>G	uc003gpr.1	+	8	955	c.751C>G	c.(751-753)CAA>GAA	p.Q251E	SLIT2_uc003gps.1_Missense_Mutation_p.Q251E	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	251	LRRCT 1.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						AGCCGAGGTTCAAAAACGAGA	0.507			NA											18	92					0	0	0.006122	0	0
SLIT2	9353	broad.mit.edu	37	4	20591325	20591325	+	Silent	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:20591325C>T	uc003gpr.1	+	30	3351	c.3147C>T	c.(3145-3147)CAC>CAT	p.H1049H	SLIT2_uc003gps.1_Silent_p.H1041H	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1049	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CCTGCCAGCACGATTCAAAGT	0.483			NA											7	37					0	0	0.001984	0	0
SLC34A2	10568	broad.mit.edu	37	4	25669599	25669599	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:25669599G>A	uc003grr.2	+	6	702	c.621G>A	c.(619-621)CGG>CGA	p.R207R	SLC34A2_uc003grs.2_Silent_p.R206R|SLC34A2_uc010iev.2_Silent_p.R206R	NM_006424	NP_006415	O95436	NPT2B_HUMAN	solute carrier family 34 (sodium phosphate),	207	Cytoplasmic (Potential).				cellular phosphate ion homeostasis	apical plasma membrane|brush border membrane|integral to plasma membrane	phosphate binding|sodium ion binding|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			skin(3)|ovary(1)|kidney(1)	5		Breast(46;0.0503)				TGGGAGATCGGAGTGAGTTCA	0.498			NA											34	11					0	0	0.005524	0	0
WDR19	57728	broad.mit.edu	37	4	39271619	39271619	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:39271619G>A	uc003gtv.2	+	31	3536	c.3382G>A	c.(3382-3384)GTT>ATT	p.V1128I	WDR19_uc011byi.1_Missense_Mutation_p.V968I|WDR19_uc003gtw.1_Missense_Mutation_p.V725I	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	1128					cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						TGCACACGATGTTCTCTTCAG	0.433			NA											6	36					0	0	0.001168	0	0
SLC4A4	8671	broad.mit.edu	37	4	72400105	72400105	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:72400105G>T	uc003hfy.2	+	18	2559	c.2442G>T	c.(2440-2442)AAG>AAT	p.K814N	SLC4A4_uc010iic.2_Missense_Mutation_p.K814N|SLC4A4_uc010iib.2_Missense_Mutation_p.K814N|SLC4A4_uc003hfz.2_Missense_Mutation_p.K814N|SLC4A4_uc003hgc.3_Missense_Mutation_p.K770N|SLC4A4_uc010iid.2_Missense_Mutation_p.K18N	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	814	Cytoplasmic (Potential).			KK->NN: Moderate reduction of the sodium- dependent ion transport activity.		basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			ATAAACTCAAGGTAAGTGTCC	0.378			NA											10	25					0.00829132	0.00988912	0.008291	1	0
PF4	5196	broad.mit.edu	37	4	74847209	74847209	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:74847209G>T	uc003hhi.2	-	2	188	c.143C>A	c.(142-144)TCC>TAC	p.S48Y		NM_002619	NP_002610	P02776	PLF4_HUMAN	platelet factor 4 (chemokine (C-X-C motif)	48					cytokine-mediated signaling pathway|immune response|leukocyte chemotaxis|negative regulation of angiogenesis|negative regulation of apoptosis|negative regulation of cytolysis|negative regulation of megakaryocyte differentiation|negative regulation of MHC class II biosynthetic process|platelet activation|platelet degranulation|positive regulation of gene expression|positive regulation of macrophage derived foam cell differentiation|positive regulation of macrophage differentiation|positive regulation of tumor necrosis factor production	extracellular space|platelet alpha granule lumen	chemokine activity|heparin binding				0	Breast(15;0.00136)		all cancers(17;0.0034)|Lung(101;0.196)		Drotrecogin alfa(DB00055)	ACGGACCTGGGAGGTGGTCTT	0.602			NA											10	20					0.00621372	0.00744995	0.006214	1	0
ANKRD56	345079	broad.mit.edu	37	4	77816994	77816994	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:77816994C>A	uc003hki.2	-	1	2009	c.2009G>T	c.(2008-2010)GGA>GTA	p.G670V		NM_001029870	NP_001025041	A6NEL2	ANR56_HUMAN	ankyrin repeat domain 56	670	ANK 2.										0						CGGGGTATATCCACAACTGGA	0.532			NA											30	172					9.65021e-13	1.63696e-12	0.002096	1	0
SLC10A6	345274	broad.mit.edu	37	4	87749282	87749282	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:87749282C>T	uc003hqd.2	-	4	773	c.625G>A	c.(625-627)GCA>ACA	p.A209T		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	209	Helical; (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		CCAGCAACTGCGACCACCAGA	0.453			NA											7	46					0	0	0.006214	0	0
ANK2	287	broad.mit.edu	37	4	114158246	114158246	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:114158246T>A	uc003ibe.3	+	6	687	c.587T>A	c.(586-588)CTG>CAG	p.L196Q	ANK2_uc003ibd.3_Missense_Mutation_p.L175Q|ANK2_uc003ibf.3_Missense_Mutation_p.L196Q|ANK2_uc003ibc.2_Missense_Mutation_p.L172Q|ANK2_uc011cgb.1_Missense_Mutation_p.L211Q	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	196	ANK 6.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CTGCCAGCTCTGCATATTGCC	0.517			NA											80	81					0	0	0.00361	0	0
UGT8	7368	broad.mit.edu	37	4	115585282	115585282	+	Silent	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:115585282A>G	uc003ibs.2	+	3	1476	c.954A>G	c.(952-954)AAA>AAG	p.K318K	UGT8_uc003ibt.2_Silent_p.K318K|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	318					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		TGCCTCAAAAAGTGATTTGGA	0.418			NA											7	31					0	0	0.00308	0	0
PCDH18	54510	broad.mit.edu	37	4	138442189	138442189	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:138442189C>A	uc003ihe.3	-	4	3789	c.3402G>T	c.(3400-3402)CAG>CAT	p.Q1134H	PCDH18_uc003ihf.3_Missense_Mutation_p.Q1126H|PCDH18_uc011cgz.1_Missense_Mutation_p.Q345H|PCDH18_uc003ihg.3_Missense_Mutation_p.Q913H|PCDH18_uc011cha.1_Missense_Mutation_p.Q314H	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	1134	Interaction with DAB1 (By similarity).|Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					TCTCCTAGCTCTGGCGGACAT	0.418			NA											16	44					2.32078e-09	3.55491e-09	0.003163	1	0
GPM6A	2823	broad.mit.edu	37	4	176594958	176594959	+	Missense_Mutation	DNP	CC	CC	AG			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:176594958_176594959CC>AG	uc003iuf.2	-	3	1063_1064	c.259_260GG>CT	c.(259-261)GGC>CTC	p.G87L	GPM6A_uc011ckj.1_Missense_Mutation_p.G80L|GPM6A_uc003iug.2_Missense_Mutation_p.G87L|GPM6A_uc003iuh.2_Missense_Mutation_p.G76L	NM_201591	NP_963885	P51674	GPM6A_HUMAN	glycoprotein M6A isoform 2	87	Helical; (Potential).					cell surface|integral to membrane					0		Breast(14;7.35e-05)|Melanoma(52;0.00909)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;9.21e-19)|Epithelial(43;3.01e-17)|OV - Ovarian serous cystadenocarcinoma(60;2.02e-09)|STAD - Stomach adenocarcinoma(60;0.00083)|GBM - Glioblastoma multiforme(59;0.00168)|LUSC - Lung squamous cell carcinoma(193;0.0388)		AGCTGCGATGCCGTAGATCACA	0.401			NA											6	14					0	0	0.004672	0	0
ODZ3	55714	broad.mit.edu	37	4	183713425	183713425	+	Splice_Site	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:183713425A>G	uc003ivd.1	+	25	5639	c.5602_splice	c.e25-2	p.S1868_splice		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3						signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTCTCTTTACAGTCCATGGTT	0.478			NA											12	29					0	0	0.000978	0	0
CDH12	1010	broad.mit.edu	37	5	21842393	21842393	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:21842393C>A	uc010iuc.2	-	5	1149	c.691G>T	c.(691-693)GAA>TAA	p.E231*	CDH12_uc011cno.1_Nonsense_Mutation_p.E191*|CDH12_uc003jgk.2_Nonsense_Mutation_p.E231*	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	231	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TGATATTGTTCTTTGACTTCT	0.383			NA								HNSCC(59;0.17)			27	40					2.65835e-16	4.81234e-16	0.007291	1	0
IL7R	3575	broad.mit.edu	37	5	35871289	35871289	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:35871289C>A	uc003jjs.2	+	4	600	c.511C>A	c.(511-513)CAG>AAG	p.Q171K	IL7R_uc011coo.1_Missense_Mutation_p.Q171K|IL7R_uc011cop.1_RNA	NM_002185	NP_002176	P16871	IL7RA_HUMAN	interleukin 7 receptor precursor	171	Extracellular (Potential).|Fibronectin type-III.				immune response|regulation of DNA recombination	extracellular region|integral to membrane	antigen binding|interleukin-7 receptor activity			ovary(3)|breast(1)|skin(1)	5	all_lung(31;0.00015)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.187)|Colorectal(62;0.202)			AGCTTACCGCCAGGAAAAGGA	0.348			NA											10	30					5.50884e-06	7.33444e-06	0.001368	1	0
MCC	4163	broad.mit.edu	37	5	112418664	112418664	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:112418664C>G	uc003kqj.3	-	9	1637	c.1107G>C	c.(1105-1107)CAG>CAC	p.Q369H	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Missense_Mutation_p.Q559H|MCC_uc011cwb.1_Missense_Mutation_p.Q369H|MCC_uc010jcd.1_Missense_Mutation_p.Q331H	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	369					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		TGGAGCAGTCCTGAAGTGAGT	0.448			NA											19	29					0	0	0.008871	0	0
DMXL1	1657	broad.mit.edu	37	5	118440930	118440930	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:118440930A>G	uc003ksd.2	+	4	522	c.341A>G	c.(340-342)CAC>CGC	p.H114R	DMXL1_uc010jcl.1_Missense_Mutation_p.H114R|DMXL1_uc003ksc.1_Missense_Mutation_p.H114R	NM_005509	NP_005500	Q9Y485	DMXL1_HUMAN	Dmx-like 1	114	WD 1.									ovary(2)	2		all_cancers(142;0.0314)|all_epithelial(76;0.00559)|Prostate(80;0.11)|Breast(839;0.231)		OV - Ovarian serous cystadenocarcinoma(64;0.000563)|Epithelial(69;0.00179)|all cancers(49;0.0243)		TCAATAGCACACAATATAACC	0.308			NA											6	13					0	0	0.001984	0	0
SLC12A2	6558	broad.mit.edu	37	5	127488418	127488418	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:127488418A>T	uc003kus.2	+	15	2448	c.2284A>T	c.(2284-2286)ACA>TCA	p.T762S	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Missense_Mutation_p.T762S	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	762	Extracellular (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	GGGATCCTCTACACAAGCCCT	0.403			NA											13	67					0	0	0.00245	0	0
AFF4	27125	broad.mit.edu	37	5	132228047	132228047	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:132228047C>A	uc003kyd.2	-	13	2854	c.2446G>T	c.(2446-2448)GCT>TCT	p.A816S	AFF4_uc011cxk.1_Missense_Mutation_p.A494S|AFF4_uc003kye.1_Missense_Mutation_p.A816S	NM_014423	NP_055238	Q9UHB7	AFF4_HUMAN	ALL1 fused gene from 5q31	816					transcription from RNA polymerase II promoter	mitochondrion|nucleolus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)|kidney(2)|skin(1)	5		all_cancers(142;0.145)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ACAGGCCCAGCGGGAGAAGGC	0.448	Ovarian(126;889 1733 2942 10745 11605)		NA											26	83					9.86323e-18	1.82889e-17	0.003954	1	0
PCDHA12	56137	broad.mit.edu	37	5	140255495	140255495	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:140255495G>A	uc003lic.2	+	1	565	c.438G>A	c.(436-438)GCG>GCA	p.A146A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.A146A	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	146	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTGAATCTGCGCCTCTGGACT	0.483	Pancreas(113;759 1672 13322 24104 50104)		NA											24	71					0	0	0.00333	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562299	140562299	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:140562299G>A	uc003liv.2	+	1	1320	c.165G>A	c.(163-165)GGG>GGA	p.G55G	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	55	Extracellular (Potential).|Cadherin 1.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGGGGTTGGGGTTGACAGAGA	0.532			NA											42	47					0	0	0.00874	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590379	140590379	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:140590379G>T	uc003liz.2	+	1	2089	c.1900G>T	c.(1900-1902)GAC>TAC	p.D634Y	PCDHB12_uc011dak.1_Missense_Mutation_p.D297Y	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	634	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGCGAGCGCGACGCGGCCAA	0.697			NA											12	81					3.41278e-10	5.37132e-10	0.00499	1	0
PCYOX1L	78991	broad.mit.edu	37	5	148747747	148747747	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:148747747G>T	uc003lqk.2	+	6	1077	c.1015G>T	c.(1015-1017)GGC>TGC	p.G339C	PCYOX1L_uc003lql.2_Missense_Mutation_p.G322C|PCYOX1L_uc010jgz.2_Missense_Mutation_p.G263C|PCYOX1L_uc003lqm.2_Missense_Mutation_p.G221C|PCYOX1L_uc003lqn.2_Missense_Mutation_p.G249C	NM_024028	NP_076933	Q8NBM8	PCYXL_HUMAN	prenylcysteine oxidase 1 like precursor	339					prenylcysteine catabolic process	extracellular region	oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTTGGTCCACGGCTACCTCAA	0.552	Ovarian(62;1136 1477 27277 27495)		NA									OREG0016912	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	43	125					1.22674e-20	2.35083e-20	0.00874	1	0
FAT2	2196	broad.mit.edu	37	5	150928985	150928985	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:150928985G>T	uc003lue.3	-	8	4673	c.4660C>A	c.(4660-4662)CGC>AGC	p.R1554S	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1554	Extracellular (Potential).|Cadherin 13.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TGAGTGAAGCGGGGTGGGTGG	0.572			NA											9	35					1.58986e-06	2.19325e-06	0.008291	1	0
FAT2	2196	broad.mit.edu	37	5	150947298	150947298	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:150947298G>A	uc003lue.3	-	1	1208	c.1195C>T	c.(1195-1197)CCA>TCA	p.P399S	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.P399S	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	399	Extracellular (Potential).|Cadherin 3.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCTGAAGATGGCTTTAGAACA	0.498			NA											19	30					0	0	0.007413	0	0
ODZ2	57451	broad.mit.edu	37	5	167645193	167645193	+	Nonsense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:167645193G>T	uc010jjd.2	+	23	4270	c.4270G>T	c.(4270-4272)GAG>TAG	p.E1424*	ODZ2_uc003lzr.3_Nonsense_Mutation_p.E1194*|ODZ2_uc003lzt.3_Nonsense_Mutation_p.E797*|ODZ2_uc010jje.2_Nonsense_Mutation_p.E688*	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTATGTTCTAGAGAACAATGT	0.493			NA											21	96					7.41877e-09	1.1177e-08	0.001882	1	0
ZNF346	23567	broad.mit.edu	37	5	176471400	176471400	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr5:176471400G>T	uc003mfi.2	+	4	426	c.383G>T	c.(382-384)AGA>ATA	p.R128I	ZNF346_uc011dfr.1_Missense_Mutation_p.R96I|ZNF346_uc011dfs.1_Intron|ZNF346_uc003mfj.2_Intron|ZNF346_uc003mfk.1_Missense_Mutation_p.R153I|ZNF346_uc011dft.1_Intron	NM_012279	NP_036411	Q9UL40	ZN346_HUMAN	zinc finger protein 346	128						cytoplasm|nucleolus	double-stranded RNA binding|zinc ion binding				0	all_cancers(89;6.3e-05)|Renal(175;0.000269)|Lung NSC(126;0.00476)|all_lung(126;0.00806)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AAGAGCAGCAGAAGCAAAGAC	0.388			NA											21	40					2.37509e-13	4.07413e-13	0.001523	1	0
HDGFL1	154150	broad.mit.edu	37	6	22569783	22569783	+	Translation_Start_Site	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:22569783G>T	uc003nds.2	+	1	106	c.-21G>T	c.(-23--19)CAGGC>CATGC			NM_138574	NP_612641	Q5TGJ6	HDGL1_HUMAN	hepatoma derived growth factor-like 1												0	Ovarian(93;0.163)					GTGTGGCCCAGGCGGGGTCCG	0.657			NA											13	23					7.93312e-07	1.11453e-06	0.00245	1	0
MRPS18B	28973	broad.mit.edu	37	6	30593483	30593483	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:30593483G>T	uc003nqo.2	+	7	843	c.686G>T	c.(685-687)GGC>GTC	p.G229V	MRPS18B_uc011dml.1_3'UTR|MRPS18B_uc010jsd.1_Missense_Mutation_p.G186V|C6orf134_uc003nqr.3_5'Flank|C6orf134_uc003rdc.2_5'Flank|C6orf134_uc003nqs.3_5'Flank|C6orf134_uc003rdd.2_5'Flank|C6orf134_uc003nqu.2_5'Flank|C6orf134_uc003nqt.2_5'Flank|C6orf134_uc011dmm.1_5'Flank|C6orf134_uc003nqv.2_5'Flank	NM_014046	NP_054765	Q9Y676	RT18B_HUMAN	mitochondrial ribosomal protein S18B precursor	229					translation	mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome			ovary(1)	1						GAAGAGAGTGGCCCCCCACCT	0.597			NA											9	121					7.48243e-07	1.05445e-06	0.006214	1	0
TNF	7124	broad.mit.edu	37	6	31545256	31545256	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:31545256C>A	uc003nui.2	+	4	813	c.644C>A	c.(643-645)CCC>CAC	p.P215H	TNF_uc003nuj.2_Missense_Mutation_p.P67T	NM_000594	NP_000585	P01375	TNFA_HUMAN	tumor necrosis factor alpha	215	Extracellular (Potential).				activation of caspase activity|activation of MAPK activity|activation of MAPKKK activity|anti-apoptosis|cellular response to nicotine|chronic inflammatory response to antigenic stimulus|embryonic digestive tract development|induction of apoptosis via death domain receptors|induction of necroptosis by extracellular signals|leukocyte tethering or rolling|necrotic cell death|negative regulation of branching involved in lung morphogenesis|negative regulation of cytokine secretion involved in immune response|negative regulation of fat cell differentiation|negative regulation of interleukin-6 production|negative regulation of lipid catabolic process|negative regulation of lipid storage|negative regulation of viral genome replication|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of chemokine biosynthetic process|positive regulation of chemokine production|positive regulation of cytokine secretion|positive regulation of ERK1 and ERK2 cascade|positive regulation of fever generation|positive regulation of heterotypic cell-cell adhesion|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of membrane protein ectodomain proteolysis|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of NFAT protein import into nucleus|positive regulation of nitric oxide biosynthetic process|positive regulation of osteoclast differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of podosome assembly|positive regulation of protein complex disassembly|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vitamin D biosynthetic process|protein import into nucleus, translocation|receptor biosynthetic process|regulation of insulin secretion|response to glucocorticoid stimulus|response to salt stress|response to virus|sequestering of triglyceride|transformed cell apoptosis|tumor necrosis factor-mediated signaling pathway	external side of plasma membrane|extracellular space|integral to plasma membrane|membrane raft|phagocytic cup|recycling endosome	cytokine activity|identical protein binding|protease binding|transcription regulatory region DNA binding|tumor necrosis factor receptor binding			ovary(1)|pancreas(1)|skin(1)	3		Ovarian(999;0.00556)			Adalimumab(DB00051)|Adenosine(DB00640)|Amrinone(DB01427)|Atorvastatin(DB01076)|Chloroquine(DB00608)|Clenbuterol(DB01407)|Etanercept(DB00005)|Glucosamine(DB01296)|Infliximab(DB00065)|Naltrexone(DB00704)|Pranlukast(DB01411)|Procaterol(DB01366)|Saquinavir(DB01232)|Simvastatin(DB00641)|Thalidomide(DB01041)	ATCAATCGGCCCGACTATCTC	0.602			NA							Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				16	28					1.45105e-14	2.54629e-14	0.006122	1	0
PKHD1	5314	broad.mit.edu	37	6	51935228	51935228	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:51935228C>A	uc003pah.1	-	10	959	c.683G>T	c.(682-684)AGC>ATC	p.S228I	PKHD1_uc003pai.2_Missense_Mutation_p.S228I	NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	228	IPT/TIG 2.|Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TACTGAGAAGCTAACATTCTG	0.388			NA											12	15					4.3838e-07	6.25477e-07	0.001855	1	0
BMP5	653	broad.mit.edu	37	6	55623883	55623883	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:55623883C>A	uc003pcq.2	-	6	1847	c.1135G>T	c.(1135-1137)GCA>TCA	p.A379S	BMP5_uc011dxf.1_Intron	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	379					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			CAATAAAATGCAGCGTATCCT	0.284			NA											18	36					0.00498961	0.00599801	0.00499	1	0
PRIM2	5558	broad.mit.edu	37	6	57512605	57512605	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:57512605A>G	uc003pdx.2	+	15	1520	c.1433A>G	c.(1432-1434)CAG>CGG	p.Q478R		NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	478					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		CCAAGTGTCCAGAAAACCAAG	0.398			NA											38	362					0	0	0.00623	0	0
EYS	346007	broad.mit.edu	37	6	66112430	66112430	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:66112430C>G	uc011dxu.1	-	7	1663	c.1125G>C	c.(1123-1125)GAG>GAC	p.E375D	EYS_uc003peq.2_Missense_Mutation_p.E375D|EYS_uc003per.1_Missense_Mutation_p.E375D	NM_001142800	NP_001136272	Q5T1H1	EYS_HUMAN	eyes shut homolog isoform 1	375	EGF-like 5.				response to stimulus|visual perception	extracellular region	calcium ion binding			lung(4)|ovary(1)|skin(1)	6						AAGGAAATGACTCACATGATG	0.284			NA											11	20					0	0	0.000978	0	0
KCNQ5	56479	broad.mit.edu	37	6	73904664	73904664	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:73904664A>T	uc003pgk.2	+	14	2673	c.2326A>T	c.(2326-2328)AGC>TGC	p.S776C	KCNQ5_uc011dyh.1_Missense_Mutation_p.S795C|KCNQ5_uc011dyi.1_Missense_Mutation_p.S786C|KCNQ5_uc010kat.2_Missense_Mutation_p.S767C|KCNQ5_uc011dyj.1_Missense_Mutation_p.S666C|KCNQ5_uc011dyk.1_Missense_Mutation_p.S526C	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	776					protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		CTTACAGGAAAGCATTTCTGA	0.512	GBM(142;1375 1859 14391 23261 44706)		NA											11	45					0	0	0.008291	0	0
FBXL4	26235	broad.mit.edu	37	6	99374671	99374673	+	Missense_Mutation	TNP	TAA	TAA	ATG			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	TAA	TAA	-	-	TAA	TAA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:99374671_99374673TAA>ATG	uc003ppf.1	-	3	550_552	c.192_194TTA>CAT	c.(190-195)CATTAT>CACATT	p.Y65I	FBXL4_uc003ppg.1_Missense_Mutation_p.Y65I|FBXL4_uc003pph.1_5'UTR	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	65					ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		CTCACTTCCATAATGGGAACTGA	0.424			NA											15	71					0	0	0.004672	0	0
PTPRK	5796	broad.mit.edu	37	6	128403661	128403661	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:128403661C>A	uc003qbk.2	-	10	2065	c.1698G>T	c.(1696-1698)ACG>ACT	p.T566T	PTPRK_uc003qbj.2_Silent_p.T566T|PTPRK_uc010kfc.2_Silent_p.T566T|PTPRK_uc011ebu.1_Silent_p.T566T|PTPRK_uc003qbl.1_Silent_p.T436T|PTPRK_uc011ebv.1_Silent_p.T566T	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	566	Extracellular (Potential).|Fibronectin type-III 3.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		AAAACTGGTACGTGGTTCCAG	0.458			NA											24	40					6.32553e-13	1.07699e-12	0.004656	1	0
SYNE1	23345	broad.mit.edu	37	6	152469466	152469466	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:152469466T>C	uc010kiw.2	-	137	25292	c.24690A>G	c.(24688-24690)GAA>GAG	p.E8230E	SYNE1_uc010kiv.2_Silent_p.E2754E|SYNE1_uc003qos.3_Silent_p.E2754E|SYNE1_uc003qot.3_Silent_p.E8159E|SYNE1_uc003qou.3_Silent_p.E8230E|SYNE1_uc003qop.3_Silent_p.E392E|SYNE1_uc011eez.1_Silent_p.E432E|SYNE1_uc003qoq.3_Silent_p.E432E|SYNE1_uc003qor.3_Silent_p.E1130E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	8230	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CTGCAGAGTCTTCCAGCTCCA	0.582			NA								HNSCC(10;0.0054)			13	20					0	0	0.001855	0	0
TULP4	56995	broad.mit.edu	37	6	158902193	158902193	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:158902193T>C	uc003qrf.2	+	8	2715	c.1358T>C	c.(1357-1359)GTG>GCG	p.V453A	TULP4_uc011efo.1_Missense_Mutation_p.V453A|TULP4_uc003qrg.2_Missense_Mutation_p.V453A	NM_020245	NP_064630	Q9NRJ4	TULP4_HUMAN	tubby like protein 4 isoform 1	453					intracellular signal transduction|response to nutrient	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Breast(66;0.000781)|Ovarian(120;0.0308)|Lung SC(201;0.164)|Prostate(117;0.171)		OV - Ovarian serous cystadenocarcinoma(65;1.64e-18)|BRCA - Breast invasive adenocarcinoma(81;2.67e-05)		GACCCGGAGGTGGGCGGCCCG	0.617			NA											11	56					0	0	0.008291	0	0
LPA	4018	broad.mit.edu	37	6	160953593	160953593	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:160953593C>A	uc003qtl.2	-	39	6051	c.5931G>T	c.(5929-5931)GAG>GAT	p.E1977D		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4485	Peptidase S1.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TGGCCAAATGCTCAGCACAAA	0.453			NA											15	32					1.05317e-09	1.64065e-09	0.00245	1	0
PARK2	5071	broad.mit.edu	37	6	162683557	162683557	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:162683557C>G	uc003qtx.3	-	3	546	c.412G>C	c.(412-414)GCA>CCA	p.A138P	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Intron|PARK2_uc003qtw.3_5'UTR|PARK2_uc003qty.3_Missense_Mutation_p.A138P|PARK2_uc003qtz.3_Intron|PARK2_uc010kke.1_Missense_Mutation_p.A138P	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	138					aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		TTCCAATTACCTGGACTTCCA	0.488			NA											10	47					0	0	0.008291	0	0
MLLT4	4301	broad.mit.edu	37	6	168276054	168276054	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr6:168276054G>T	uc003qwd.2	+	5	757	c.615G>T	c.(613-615)ATG>ATT	p.M205I	MLLT4_uc003qwb.1_Missense_Mutation_p.M205I|MLLT4_uc003qwc.1_Missense_Mutation_p.M206I	NM_001040001	NP_001035090	P55196	AFAD_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	206					adherens junction organization|cell adhesion|cell junction assembly|cell-cell signaling|signal transduction	adherens junction|cell-cell junction|cytosol|nucleus	protein C-terminus binding			ovary(2)|lung(1)|kidney(1)|central_nervous_system(1)	5		Breast(66;1.07e-05)|Ovarian(120;0.024)		Epithelial(4;2.38e-32)|OV - Ovarian serous cystadenocarcinoma(33;9.99e-23)|BRCA - Breast invasive adenocarcinoma(4;1.2e-11)|GBM - Glioblastoma multiforme(31;0.00117)		ACAAAGACATGCCGGAAACCA	0.373			NA	T	MLL	AL								44	123					1.47857e-17	2.71962e-17	0.00361	1	0
HEATR2	54919	broad.mit.edu	37	7	780463	780463	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:780463G>T	uc010krz.1	+	3	808	c.788G>T	c.(787-789)CGG>CTG	p.R263L	HEATR2_uc003siz.2_Missense_Mutation_p.R131L	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	263	HEAT 3.						protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		CAGGTCCGGCGGGCGGTGGCC	0.637			NA											55	163					6.52717e-41	1.32276e-40	0.00361	1	0
HOXA10	3206	broad.mit.edu	37	7	27213842	27213842	+	Silent	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:27213842A>G	uc011jzm.1	-	1	114	c.84T>C	c.(82-84)TCT>TCC	p.S28S	HOXA10_uc003syw.3_Intron	NM_018951	NP_061824	P31260	HXA10_HUMAN	homeobox A10 isoform a	28					spermatogenesis		protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGACCAAAAAAGAGTTCGCGG	0.438			NA											11	30					0	0	0.00499	0	0
GPR141	353345	broad.mit.edu	37	7	37780251	37780252	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:37780251_37780252CC>AA	uc003tfm.1	+	1	256_257	c.256_257CC>AA	c.(256-258)CCC>AAC	p.P86N	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	86	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						GTTTGGGCTGCCCTTCTGCAAA	0.485			NA											19	37					0	0	0.004672	0	0
FAM183B	340286	broad.mit.edu	37	7	38725631	38725631	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:38725631G>T	uc011kbd.1	-	2	962	c.666C>A	c.(664-666)CCC>CCA	p.P222P		NR_028347				Homo sapiens cDNA FLJ42138 fis, clone TESTI2036684.												0						CCGTGGGTCCGGGGCTCTCTC	0.622			NA											10	35					1.08611e-07	1.59948e-07	0.000978	1	0
AEBP1	165	broad.mit.edu	37	7	44146278	44146278	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:44146278G>T	uc003tkb.2	+	2	692	c.387G>T	c.(385-387)AAG>AAT	p.K129N		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	129	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						AGGCCACCAAGAAGCCCAAGG	0.602			NA											15	23					1.3612e-06	1.89493e-06	0.003163	1	0
ZNF713	349075	broad.mit.edu	37	7	55990971	55990971	+	Silent	SNP	A	A	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:55990971A>C	uc003trc.1	+	2	203	c.165A>C	c.(163-165)CTA>CTC	p.L55L	ZNF713_uc003tra.1_Silent_p.L68L|MRPS17_uc003trb.2_Silent_p.L55L	NM_182633	NP_872439	Q8N859	ZN713_HUMAN	zinc finger protein 713	55	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding	p.L55I(1)		ovary(2)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			ACAGGAATCTAGTTGCACTGG	0.502			NA											15	74					0	0	0.00499	0	0
AUTS2	26053	broad.mit.edu	37	7	69583191	69583191	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:69583191G>A	uc003tvw.3	+	3	1339	c.596G>A	c.(595-597)CGG>CAG	p.R199Q	AUTS2_uc003tvv.3_Missense_Mutation_p.R199Q|AUTS2_uc003tvx.3_Missense_Mutation_p.R199Q	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	199										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		GGCTTCCACCGGAGCAGCTCT	0.428			NA											3	30					0	0	0.000248	0	0
DBF4	10926	broad.mit.edu	37	7	87533696	87533696	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:87533696T>C	uc003ujf.1	+	11	1518	c.1014T>C	c.(1012-1014)TTT>TTC	p.F338F	DBF4_uc003ujh.1_Silent_p.F78F|DBF4_uc003ujg.1_Silent_p.F114F|DBF4_uc011khf.1_Silent_p.F105F	NM_006716	NP_006707	Q9UBU7	DBF4A_HUMAN	activator of S phase kinase	338					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	enzyme activator activity|nucleic acid binding|protein binding|zinc ion binding			lung(2)	2	Esophageal squamous(14;0.00202)	Breast(660;0.0334)				TTTTTGACTTTGTGGAATATG	0.279			NA											7	23					0	0	0.001984	0	0
SLC12A9	56996	broad.mit.edu	37	7	100452363	100452363	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:100452363G>T	uc003uwp.2	+	3	445	c.303G>T	c.(301-303)GGG>GGT	p.G101G	SLC12A9_uc003uwo.1_Intron|SLC12A9_uc003uwq.2_Intron|SLC12A9_uc011kki.1_Intron|SLC12A9_uc003uwr.2_5'Flank|SLC12A9_uc003uws.2_5'Flank|SLC12A9_uc003uwt.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	101	Cytoplasmic (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					CCGTGCAGGGGGGCGGAGCCT	0.612			NA											24	41					6.12954e-19	1.14585e-18	0.004656	1	0
MUC17	140453	broad.mit.edu	37	7	100679543	100679543	+	Missense_Mutation	SNP	G	G	A	rs150842387		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:100679543G>A	uc003uxp.1	+	3	4899	c.4846G>A	c.(4846-4848)GCT>ACT	p.A1616T	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1616	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|25.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ATCTACAACCGCTGAAGGTAG	0.502			NA											14	255					0	0	0.00245	0	0
MYL10	93408	broad.mit.edu	37	7	101266322	101266322	+	Missense_Mutation	SNP	C	C	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:101266322C>T	uc003uyr.2	-	4	482	c.304G>A	c.(304-306)GGC>AGC	p.G102S		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	102	EF-hand 1.|1 (Potential).					mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						TCGATGAAGCCATCACGGTTC	0.627	Esophageal Squamous(24;575 709 17516 40384 51639)		NA											12	18					0	0	0.00245	0	0
LAMB1	3912	broad.mit.edu	37	7	107638920	107638920	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:107638920G>T	uc003vew.2	-	4	566	c.231C>A	c.(229-231)TTC>TTA	p.F77L	LAMB1_uc003vev.2_Missense_Mutation_p.F101L|LAMB1_uc003vex.2_Missense_Mutation_p.F77L|LAMB1_uc010ljn.1_Missense_Mutation_p.F163L	NM_002291	NP_002282	P07942	LAMB1_HUMAN	laminin, beta 1 precursor	77	Laminin N-terminal.				axon guidance|odontogenesis|positive regulation of cell migration|positive regulation of epithelial cell proliferation|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-2 complex|laminin-8 complex|perinuclear region of cytoplasm	extracellular matrix structural constituent			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	8					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AATTGCATATGAAGCATTTTT	0.363			NA											8	37					1.58986e-06	2.19325e-06	0.008291	1	0
CHRM2	1129	broad.mit.edu	37	7	136699633	136699633	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr7:136699633C>A	uc003vtf.1	+	4	644	c.21C>A	c.(19-21)TCC>TCA	p.S7S	CHRM2_uc003vtg.1_Silent_p.S7S|CHRM2_uc003vtj.1_Silent_p.S7S|CHRM2_uc003vtk.1_Silent_p.S7S|CHRM2_uc003vtl.1_Silent_p.S7S|CHRM2_uc003vtm.1_Silent_p.S7S|CHRM2_uc003vti.1_Silent_p.S7S|CHRM2_uc003vto.1_Silent_p.S7S|CHRM2_uc003vtn.1_Silent_p.S7S|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	7	Extracellular (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	CAACAAACTCCTCTAACAATA	0.368			NA											17	28					3.32936e-07	4.76515e-07	0.006122	1	0
AMAC1L2	83650	broad.mit.edu	37	8	11189615	11189615	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:11189615G>T	uc003wtp.1	+	1	1121	c.1000G>T	c.(1000-1002)GGG>TGG	p.G334W		NM_054028	NP_473369	Q96KT7	AMCL2_HUMAN	acyl-malonyl condensing enzyme	334						integral to membrane					0			STAD - Stomach adenocarcinoma(15;0.00676)	COAD - Colon adenocarcinoma(149;0.0563)		TGAGAGGACAGGGAAGGTGGA	0.468			NA											27	43					2.44723e-14	4.26172e-14	0.004656	1	0
SNTG1	54212	broad.mit.edu	37	8	51363114	51363114	+	Splice_Site	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:51363114A>T	uc010lxy.1	+	8	649	c.278_splice	c.e8-2	p.A93_splice	SNTG1_uc003xqs.1_Splice_Site_p.A93_splice|SNTG1_uc010lxz.1_Splice_Site_p.A93_splice|SNTG1_uc011ldl.1_Splice_Site	NM_018967	NP_061840	Q9NSN8	SNTG1_HUMAN	syntrophin, gamma 1						cell communication	cytoplasm|cytoskeleton|nucleus|ruffle membrane|syntrophin complex	actin binding|protein C-terminus binding			ovary(5)	5		all_cancers(86;0.00754)|all_epithelial(80;9.76e-05)|Lung NSC(129;0.000865)|all_lung(136;0.00249)|Colorectal(162;0.22)				TTTCATTCACAGCGGAACTTT	0.259			NA											45	39					0	0	0.00361	0	0
XKR9	389668	broad.mit.edu	37	8	71646419	71646419	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:71646419G>T	uc003xyq.2	+	5	1416	c.882G>T	c.(880-882)AGG>AGT	p.R294S	XKR9_uc010lze.2_Missense_Mutation_p.R294S|XKR9_uc010lzd.2_Missense_Mutation_p.R162S	NM_001011720	NP_001011720	Q5GH70	XKR9_HUMAN	XK, Kell blood group complex subunit-related	294						integral to membrane				ovary(1)|skin(1)	2	Breast(64;0.0716)		Epithelial(68;0.00301)|all cancers(69;0.0165)|OV - Ovarian serous cystadenocarcinoma(28;0.0524)|BRCA - Breast invasive adenocarcinoma(89;0.166)			ATATTGTTAGGGTACTGGGCA	0.323			NA											9	43					0.000442599	0.000561525	0.006214	1	0
TRPA1	8989	broad.mit.edu	37	8	72984028	72984028	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:72984028C>A	uc003xza.2	-	2	361	c.186G>T	c.(184-186)ATG>ATT	p.M62I		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	62	Cytoplasmic (Potential).|ANK 1.					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	AGAAGGTGTCCATATCGTCAC	0.348			NA											40	36					9.8876e-21	1.90274e-20	0.004878	1	0
ZFHX4	79776	broad.mit.edu	37	8	77764905	77764905	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:77764905T>C	uc003yav.2	+	10	6000	c.5613T>C	c.(5611-5613)TTT>TTC	p.F1871F	ZFHX4_uc003yau.1_Silent_p.F1916F|ZFHX4_uc003yaw.1_Silent_p.F1871F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	1871						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TGGAAAACTTTGGTTTTGAAC	0.443			NA								HNSCC(33;0.089)			14	41					0	0	0.001855	0	0
MMP16	4325	broad.mit.edu	37	8	89198727	89198727	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:89198727G>T	uc003yeb.3	-	3	664	c.382C>A	c.(382-384)CAG>AAG	p.Q128K	MMP16_uc003yec.2_Missense_Mutation_p.Q128K	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	128	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						TGCTTGTGCTGCCATTTCTGT	0.418			NA											39	200					4.92203e-23	9.55207e-23	0.00623	1	0
VPS13B	157680	broad.mit.edu	37	8	100866131	100866131	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:100866131G>T	uc003yiv.2	+	56	10700	c.10589G>T	c.(10588-10590)CGG>CTG	p.R3530L	VPS13B_uc003yiw.2_Missense_Mutation_p.R3505L	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	3530					protein transport			p.R3530W(1)		ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			AAACCTGCTCGGTTATACGTG	0.408	Colon(161;2205 2542 7338 31318)		NA											32	115					2.85442e-18	5.31432e-18	0.002096	1	0
UBR5	51366	broad.mit.edu	37	8	103309166	103309166	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:103309166C>A	uc003ykr.1	-	28	3653	c.3620G>T	c.(3619-3621)TGT>TTT	p.C1207F	UBR5_uc003yks.1_Missense_Mutation_p.C1207F	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	1207	UBR-type.				cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			TTCCGTACAACAACACAGTGA	0.313	Ovarian(131;96 1741 5634 7352 27489)		NA											23	16					1.7881e-09	2.76672e-09	0.008361	1	0
CSMD3	114788	broad.mit.edu	37	8	113697849	113697849	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:113697849C>A	uc003ynu.2	-	15	2427	c.2268G>T	c.(2266-2268)GGG>GGT	p.G756G	CSMD3_uc003yns.2_Silent_p.G28G|CSMD3_uc003ynt.2_Silent_p.G716G|CSMD3_uc011lhx.1_Silent_p.G652G	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	756	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTATCCGGCTCCCTGGATCAG	0.413			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			73	48					2.10938e-32	4.20042e-32	0.00361	1	0
TRPS1	7227	broad.mit.edu	37	8	116631944	116631944	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:116631944T>C	uc003ynz.2	-	2	801	c.342A>G	c.(340-342)TCA>TCG	p.S114S	TRPS1_uc011lhy.1_Silent_p.S118S|TRPS1_uc003yny.2_Silent_p.S127S|TRPS1_uc010mcy.2_Silent_p.S114S	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	114					negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CAGCTGGAGATGAGAAAGCCA	0.532			NA							Langer-Giedion_syndrome				17	84					0	0	0.00499	0	0
SLC30A8	169026	broad.mit.edu	37	8	118165318	118165318	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:118165318G>T	uc003yoh.2	+	3	637	c.407G>T	c.(406-408)TGG>TTG	p.W136L	SLC30A8_uc010mcz.2_Missense_Mutation_p.W87L|SLC30A8_uc011lia.1_Missense_Mutation_p.W87L|SLC30A8_uc003yog.2_Missense_Mutation_p.W87L	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	136	Cytoplasmic (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			ACATTTGGATGGCACCGAGCA	0.512	Ovarian(162;1202 1922 6011 16223 52092)		NA											4	34					2.56e-06	3.47917e-06	0.000248	1	0
FER1L6	654463	broad.mit.edu	37	8	125115475	125115475	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:125115475G>C	uc003yqw.2	+	39	5420	c.5214G>C	c.(5212-5214)GAG>GAC	p.E1738D	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1738	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			ATGCAAGTGAGGAGACCAAGA	0.473			NA											133	110					0	0	0.00361	0	0
ADCY8	114	broad.mit.edu	37	8	131922105	131922105	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:131922105G>C	uc003ytd.3	-	6	1745	c.1489C>G	c.(1489-1491)CGG>GGG	p.R497G	ADCY8_uc010mds.2_Missense_Mutation_p.R497G	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	497	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GTCCTTGACCGCACATACCTG	0.428			NA								HNSCC(32;0.087)			65	40					0	0	0.00361	0	0
TRAPPC9	83696	broad.mit.edu	37	8	140743352	140743352	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:140743352C>G	uc003yvj.2	-	23	3533	c.3399G>C	c.(3397-3399)TGG>TGC	p.W1133C	TRAPPC9_uc003yvh.2_Missense_Mutation_p.W1231C	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	1133					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						GCAGGCAGAACCAAGAGGGTG	0.657			NA											12	48					0	0	0.001855	0	0
GSDMD	79792	broad.mit.edu	37	8	144642896	144642896	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:144642896G>A	uc010mfe.2	+	7	1237	c.534G>A	c.(532-534)CGG>CGA	p.R178R	uc003yye.2_5'Flank|GSDMD_uc003yyf.2_Silent_p.R226R|GSDMD_uc003yyi.2_Silent_p.R389R|GSDMD_uc003yyg.2_Silent_p.R178R|GSDMD_uc003yyh.2_Silent_p.R109R	NM_024736	NP_079012	P57764	GSDMD_HUMAN	gasdermin D	178											0						CCCACAAGCGGGAGGGCTCGG	0.697			NA											3	13					0	0	0.004672	0	0
EPPK1	83481	broad.mit.edu	37	8	144940342	144940342	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr8:144940342G>C	uc003zaa.1	-	2	15103	c.15090C>G	c.(15088-15090)GAC>GAG	p.D5030E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	5030	Plectin 64.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GGTAGGCCACGTCCACGGGCA	0.692			NA											11	599					0	0	0.006122	0	0
FRMPD1	22844	broad.mit.edu	37	9	37746517	37746517	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr9:37746517C>G	uc004aag.1	+	16	4532	c.4488C>G	c.(4486-4488)CAC>CAG	p.H1496Q	FRMPD1_uc004aah.1_Missense_Mutation_p.H1496Q	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	1496						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		CCTTCCAGCACCTGGTCCAGC	0.637			NA											12	32					0	0	0.001368	0	0
OR13C9	286362	broad.mit.edu	37	9	107379838	107379838	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr9:107379838G>T	uc011lvr.1	-	1	648	c.648C>A	c.(646-648)ATC>ATA	p.I216I		NM_001001956	NP_001001956	Q8NGT0	O13C9_HUMAN	olfactory receptor, family 13, subfamily C,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATGAGTAAGAGATAACTATCA	0.453			NA											6	31					5.9392e-07	8.44768e-07	0.001168	1	0
IKBKAP	8518	broad.mit.edu	37	9	111659270	111659270	+	Silent	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr9:111659270T>C	uc004bdm.3	-	24	3070	c.2550A>G	c.(2548-2550)GAA>GAG	p.E850E	IKBKAP_uc004bdl.2_Silent_p.E501E|IKBKAP_uc011lwc.1_Silent_p.E736E|IKBKAP_uc010mtq.2_Silent_p.E501E	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	850					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						CAATTTCCAGTTCTGGGGTTG	0.443			NA											17	34					0	0	0.008871	0	0
ARSH	347527	broad.mit.edu	37	X	2936618	2936618	+	Missense_Mutation	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:2936618G>A	uc011mhj.1	+	5	808	c.808G>A	c.(808-810)GTA>ATA	p.V270I		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	270						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CTTCCTGCACGTACATACTCC	0.398			NA											29	41					0	0	0.001786	0	0
KAL1	3730	broad.mit.edu	37	X	8507735	8507735	+	Silent	SNP	G	G	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:8507735G>A	uc004csf.2	-	10	1569	c.1419C>T	c.(1417-1419)ACC>ACT	p.T473T		NM_000216	NP_000207	P23352	KALM_HUMAN	Kallmann syndrome 1 protein precursor	473	Fibronectin type-III 3.				axon guidance|cell adhesion|cellular component movement	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|serine-type endopeptidase inhibitor activity			ovary(3)|pancreas(1)	4						CCTCTGATCCGGTTGTTCTGT	0.453			NA											6	56					0	0	0.001168	0	0
PRPS2	5634	broad.mit.edu	37	X	12838875	12838875	+	Missense_Mutation	SNP	A	A	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:12838875A>G	uc004cvb.2	+	6	941	c.817A>G	c.(817-819)AAC>GAC	p.N273D	PRPS2_uc004cva.2_Missense_Mutation_p.N276D|PRPS2_uc010nec.2_Missense_Mutation_p.N151D	NM_002765	NP_002756	P11908	PRPS2_HUMAN	phosphoribosyl pyrophosphate synthetase 2	273					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity				0						TGTCGTCACAAACACAATTCC	0.468			NA											29	41					0	0	0.008361	0	0
ARX	170302	broad.mit.edu	37	X	25031161	25031161	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:25031161G>T	uc004dbp.3	-	2	1162	c.951C>A	c.(949-951)AGC>AGA	p.S317R		NM_139058	NP_620689	Q96QS3	ARX_HUMAN	aristaless related homeobox	317						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CCTCCGAGTCGCTGCCCGCAG	0.662			NA											7	11					0.000157383	0.000203047	0.00308	1	0
MAGEB10	139422	broad.mit.edu	37	X	27840205	27840205	+	Missense_Mutation	SNP	A	A	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:27840205A>T	uc004dbw.2	+	3	1009	c.782A>T	c.(781-783)CAG>CTG	p.Q261L		NM_182506	NP_872312	Q96LZ2	MAGBA_HUMAN	melanoma antigen family B, 10	261	MAGE.									lung(1)|breast(1)|central_nervous_system(1)	3						CTGGAGTACCAGCAAGTGCCC	0.473			NA											6	47					0	0	0.001168	0	0
DMD	1756	broad.mit.edu	37	X	32536160	32536160	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:32536160C>A	uc004dda.1	-	18	2501	c.2257G>T	c.(2257-2259)GAA>TAA	p.E753*	DMD_uc004dcz.2_Nonsense_Mutation_p.E630*|DMD_uc004dcy.1_Nonsense_Mutation_p.E749*|DMD_uc004ddb.1_Nonsense_Mutation_p.E745*|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Nonsense_Mutation_p.E745*	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	753	Spectrin 4.				muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				AAGTTGCCTTCCTTCCGAAAG	0.383			NA											6	25					0.00116845	0.00144635	0.001168	1	0
ARAF	369	broad.mit.edu	37	X	47426120	47426120	+	Missense_Mutation	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:47426120T>A	uc011mlq.1	+	7	773	c.640T>A	c.(640-642)TCC>ACC	p.S214T	ARAF_uc011mln.1_Intron|ARAF_uc011mlo.1_Missense_Mutation_p.S80T|ARAF_uc011mlp.1_Missense_Mutation_p.S214T|ARAF_uc004dic.1_5'UTR	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	214					intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	CCGCTCCACGTCCACTCCCAA	0.662			NA											3	20					0	0	0.004672	0	0
LAS1L	81887	broad.mit.edu	37	X	64744855	64744855	+	Silent	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:64744855T>A	uc004dwa.1	-	8	1104	c.1032A>T	c.(1030-1032)ATA>ATT	p.I344I	LAS1L_uc004dwc.1_Silent_p.I344I|LAS1L_uc004dwd.1_Silent_p.I302I	NM_031206	NP_112483	Q9Y4W2	LAS1L_HUMAN	LAS1-like	344						MLL1 complex|nucleolus	protein binding			ovary(3)|large_intestine(1)	4						CTTCATATTCTATCTGCAAAG	0.547			NA											6	21					0	0	0.001984	0	0
STARD8	9754	broad.mit.edu	37	X	67939098	67939098	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:67939098C>A	uc004dxa.2	+	6	1879	c.1507C>A	c.(1507-1509)CAT>AAT	p.H503N	STARD8_uc004dxb.2_Missense_Mutation_p.H583N|STARD8_uc004dxc.3_Missense_Mutation_p.H503N	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	503					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						CCAGAACTCCCATCGTCCCAG	0.587			NA											16	31					1.56452e-12	2.60564e-12	0.007413	1	0
RLIM	51132	broad.mit.edu	37	X	73811943	73811943	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:73811943G>T	uc004ebu.2	-	5	1497	c.1207C>A	c.(1207-1209)CAG>AAG	p.Q403K	RLIM_uc004ebw.2_Missense_Mutation_p.Q403K	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	403					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						AACATGGTCTGAATTGCAACA	0.413	Esophageal Squamous(169;1899 1923 14997 18818 32118)		NA											13	74					2.27111e-07	3.28129e-07	0.001368	1	0
ATRX	546	broad.mit.edu	37	X	76938620	76938620	+	Missense_Mutation	SNP	T	T	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:76938620T>C	uc004ecp.3	-	9	2360	c.2128A>G	c.(2128-2130)AAT>GAT	p.N710D	ATRX_uc004ecq.3_Missense_Mutation_p.N672D|ATRX_uc004eco.3_Missense_Mutation_p.N495D|ATRX_uc004ecr.2_Missense_Mutation_p.N642D|ATRX_uc010nlx.1_Missense_Mutation_p.N681D|ATRX_uc010nly.1_Missense_Mutation_p.N655D	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	710					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	GGCTTAGGATTATCTATAGCA	0.353			NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						9	242					0	0	0.006214	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913735	77913735	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:77913735G>T	uc004edc.1	-	2	479	c.183C>A	c.(181-183)CCC>CCA	p.P61P		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	61	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						GGAGCTTCTGGGGCTCCTTGG	0.567			NA											9	27					3.09899e-07	4.44933e-07	0.004482	1	0
NRK	203447	broad.mit.edu	37	X	105153581	105153581	+	Missense_Mutation	SNP	G	G	C			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:105153581G>C	uc004emd.2	+	13	2251	c.1948G>C	c.(1948-1950)GCA>CCA	p.A650P	NRK_uc010npc.1_Missense_Mutation_p.A318P	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	650							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CTTGCTTCGGGCACCAAACTC	0.483			NA								HNSCC(51;0.14)			3	9					0	0	0.004672	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450147	105450147	+	Nonsense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:105450147C>A	uc004emf.1	+	4	1371	c.722C>A	c.(721-723)TCA>TAA	p.S241*	MUM1L1_uc004emg.1_Nonsense_Mutation_p.S241*	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	241										ovary(2)|pancreas(1)|skin(1)	4						CCACCTTTGTCACCTTTGTCA	0.428			NA											8	21					5.18039e-06	6.91726e-06	0.00308	1	0
GUCY2F	2986	broad.mit.edu	37	X	108696812	108696812	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:108696812G>T	uc004eod.3	-	4	1585	c.1309C>A	c.(1309-1311)CCT>ACT	p.P437T	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	437	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						AAGTGAATAGGGGTCCCTCCG	0.488			NA											11	47					1.49906e-05	1.97859e-05	0.00245	1	0
NKAP	79576	broad.mit.edu	37	X	119059199	119059199	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:119059199C>A	uc004esh.2	-	9	1399	c.1232G>T	c.(1231-1233)GGG>GTG	p.G411V	NKAP_uc004esg.2_Missense_Mutation_p.G298V	NM_024528	NP_078804	Q8N5F7	NKAP_HUMAN	NFKB activating protein	411	Necessary for interaction with HDAC3 and transcriptional repression.				negative regulation of transcription, DNA-dependent|Notch signaling pathway|positive regulation of alpha-beta T cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|protein binding			ovary(2)	2						GTCATCCTTCCCTTTGGTCTT	0.368			NA											20	94					4.35082e-09	6.57648e-09	0.001523	1	0
ELF4	2000	broad.mit.edu	37	X	129200733	129200733	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:129200733G>T	uc004evd.3	-	9	2340	c.1955C>A	c.(1954-1956)CCT>CAT	p.P652H	ELF4_uc004eve.3_Missense_Mutation_p.P652H	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	652					natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GAGGGAAGTAGGGTTGAATGG	0.547			NA	T	ERG	AML								28	171					5.77227e-19	1.08348e-18	0.008361	1	0
USP26	83844	broad.mit.edu	37	X	132161952	132161952	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:132161952G>T	uc010nrm.1	-	6	767	c.297C>A	c.(295-297)GAC>GAA	p.D99E	USP26_uc011mvf.1_Missense_Mutation_p.D99E	NM_031907	NP_114113	Q9BXU7	UBP26_HUMAN	ubiquitin-specific protease 26	99					protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(3)|central_nervous_system(3)|kidney(1)|liver(1)	8	Acute lymphoblastic leukemia(192;0.000127)					GATGAACTCTGTCCAAGAATA	0.388	NSCLC(104;342 1621 36940 47097 52632)		NA											7	30					0.00198382	0.0024229	0.001984	1	0
DDX26B	203522	broad.mit.edu	37	X	134680705	134680705	+	Missense_Mutation	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:134680705G>T	uc004eyw.3	+	5	871	c.508G>T	c.(508-510)GCC>TCC	p.A170S		NM_182540	NP_872346	Q5JSJ4	DX26B_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide	170	VWFA.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AAGGTTATTTGCCCTGGTGTT	0.468			NA											21	81					8.34094e-07	1.16824e-06	0.008871	1	0
FHL1	2273	broad.mit.edu	37	X	135291445	135291445	+	Silent	SNP	T	T	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:135291445T>A	uc004ezo.2	+	6	832	c.732T>A	c.(730-732)GCT>GCA	p.A244A	FHL1_uc010nrz.2_Intron|FHL1_uc004ezm.2_Intron|FHL1_uc004ezl.2_Intron|FHL1_uc004ezq.2_Intron|FHL1_uc011mvy.1_Intron|FHL1_uc011mvz.1_Intron|FHL1_uc004ezn.2_Intron|FHL1_uc011mwa.1_Intron|FHL1_uc011mwb.1_Intron|FHL1_uc004ezp.2_Intron|FHL1_uc004ezr.2_Intron	NM_001159702	NP_001153174	Q13642	FHL1_HUMAN	four and a half LIM domains 1 isoform 1	244					cell differentiation|cell growth|muscle organ development|organ morphogenesis	cytosol|nucleus|plasma membrane	protein binding|zinc ion binding				0	Acute lymphoblastic leukemia(192;0.000127)					TCTCTAAAGCTAGGAAGCCCC	0.572			NA									OREG0019943	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	38					0	0	0.000602	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795344	142795344	+	Missense_Mutation	SNP	C	C	G			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:142795344C>G	uc004fbz.2	-	2	1088	c.334G>C	c.(334-336)GAC>CAC	p.D112H		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	112										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					AGGTCTTCGTCCTCCTGTGAA	0.527			NA											48	385					0	0	0.00361	0	0
AFF2	2334	broad.mit.edu	37	X	147733577	147733577	+	Silent	SNP	A	A	G	rs144497911	byFrequency	TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:147733577A>G	uc004fcp.2	+	2	584	c.105A>G	c.(103-105)CAA>CAG	p.Q35Q	AFF2_uc004fco.2_Silent_p.Q35Q|AFF2_uc004fcq.2_Silent_p.Q35Q|AFF2_uc004fcr.2_Silent_p.Q35Q|AFF2_uc011mxb.1_Silent_p.Q35Q|AFF2_uc004fcs.2_Silent_p.Q35Q	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	35					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					GGAGGAATCAAGAAGTCCAGC	0.363			NA											28	87					0	0	0.008361	0	0
AFF2	2334	broad.mit.edu	37	X	147743554	147743554	+	Silent	SNP	G	G	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:147743554G>T	uc004fcp.2	+	3	785	c.306G>T	c.(304-306)GTG>GTT	p.V102V	AFF2_uc004fco.2_Silent_p.V98V|AFF2_uc004fcq.2_Silent_p.V98V|AFF2_uc004fcr.2_Silent_p.V98V|AFF2_uc011mxb.1_Silent_p.V102V|AFF2_uc004fcs.2_Silent_p.V98V	NM_002025	NP_002016	P51816	AFF2_HUMAN	fragile X mental retardation 2	102					brain development|mRNA processing|regulation of RNA splicing|RNA splicing	nuclear speck	G-quadruplex RNA binding|protein binding			ovary(3)|pancreas(2)	5	Acute lymphoblastic leukemia(192;6.56e-05)					AGAATTCTGTGCCCCAGAATC	0.398			NA											82	117					8.00303e-49	1.62906e-48	0.00361	1	0
GPR50	9248	broad.mit.edu	37	X	150348412	150348412	+	Silent	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:150348412C>A	uc010ntg.1	+	2	492	c.357C>A	c.(355-357)ATC>ATA	p.I119I	uc004fes.1_5'Flank|GPR50_uc011myc.1_Silent_p.I119I	NM_004224	NP_004215	Q13585	MTR1L_HUMAN	G protein-coupled receptor 50	119	Helical; Name=3; (Potential).				cell-cell signaling	integral to plasma membrane	melatonin receptor activity			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTTCAACATCGTGGCAATCG	0.542			NA											47	83					3.4345e-17	6.26693e-17	0.002852	1	0
FLNA	2316	broad.mit.edu	37	X	153593758	153593758	+	Missense_Mutation	SNP	C	C	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chrX:153593758C>A	uc004fkk.2	-	10	1775	c.1526G>T	c.(1525-1527)GGC>GTC	p.G509V	FLNA_uc010nuu.1_Missense_Mutation_p.G509V	NM_001110556	NP_001104026	P21333	FLNA_HUMAN	filamin A, alpha isoform 2	509	Filamin 3.				actin crosslink formation|actin cytoskeleton reorganization|cell junction assembly|cytoplasmic sequestering of protein|establishment of protein localization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|negative regulation of protein catabolic process|negative regulation of sequence-specific DNA binding transcription factor activity|platelet activation|platelet degranulation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription factor import into nucleus|protein localization at cell surface|protein stabilization|receptor clustering	cell cortex|cytosol|extracellular region|nucleus|plasma membrane	actin filament binding|Fc-gamma receptor I complex binding|glycoprotein binding|GTP-Ral binding|protein homodimerization activity|Rac GTPase binding|signal transducer activity|transcription factor binding			breast(6)	6	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					ACTGCCAGCGCCCTTTGTGTA	0.672			NA											19	76					6.94344e-10	1.08536e-09	0.006122	1	0
ITGA8	8516	broad.mit.edu	37	10	15713635	15713636	+	Frame_Shift_Ins	INS	-	-	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:15713635_15713636insA	uc001ioc.1	-	8	813_814	c.813_814insT	c.(811-816)GTTGCTfs	p.V271fs	ITGA8_uc010qcb.1_Intron	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	271_272	Extracellular (Potential).|FG-GAP 4.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TCCCCAGCAGCAACTGAGTATC	0.371			NA											11	14	---	---	---	---	NA	NA	NA	NA	NA
BMS1	9790	broad.mit.edu	37	10	43316126	43316126	+	Frame_Shift_Del	DEL	A	A	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:43316126delA	uc001jaj.2	+	17	3298	c.2940delA	c.(2938-2940)GCAfs	p.A980fs		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	980					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						ATTGCGGAGCAGCCTTTTGGG	0.408			NA											11	43	---	---	---	---	NA	NA	NA	NA	NA
PLCE1	51196	broad.mit.edu	37	10	96084675	96084675	+	Frame_Shift_Del	DEL	C	C	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:96084675delC	uc001kjk.2	+	32	7381	c.6747delC	c.(6745-6747)GGCfs	p.G2249fs	PLCE1_uc010qnx.1_Frame_Shift_Del_p.G2233fs|PLCE1_uc001kjm.2_Frame_Shift_Del_p.G1941fs|PLCE1_uc001kjp.2_Frame_Shift_Del_p.G607fs	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	2249					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAAAGAAAGGCATTTCTTTCG	0.428			NA											26	39	---	---	---	---	NA	NA	NA	NA	NA
TUBGCP2	10844	broad.mit.edu	37	10	135093312	135093312	+	Frame_Shift_Del	DEL	C	C	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr10:135093312delC	uc001lmg.1	-	18	3024	c.2667delG	c.(2665-2667)GGGfs	p.G889fs	ADAM8_uc010quz.1_5'Flank|ADAM8_uc009ybi.2_5'Flank|ADAM8_uc010qva.1_5'Flank|ADAM8_uc009ybj.1_5'Flank|TUBGCP2_uc001lmf.1_Frame_Shift_Del_p.G482fs|TUBGCP2_uc010qvc.1_Frame_Shift_Del_p.G917fs|TUBGCP2_uc009ybk.1_Frame_Shift_Del_p.G912fs|TUBGCP2_uc010qvd.1_Frame_Shift_Del_p.G759fs|TUBGCP2_uc001lmh.1_RNA	NM_006659	NP_006650	Q9BSJ2	GCP2_HUMAN	tubulin, gamma complex associated protein 2	889					G2/M transition of mitotic cell cycle|microtubule nucleation|protein complex assembly	centrosome|cytoplasmic microtubule|cytosol|spindle pole	protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.87e-06)|all cancers(32;8.98e-06)|Epithelial(32;1.15e-05)		GAGCCGGGGGCCCCCGCAGGA	0.647			NA											5	11	---	---	---	---	NA	NA	NA	NA	NA
ATM	472	broad.mit.edu	37	11	108115600	108115601	+	Frame_Shift_Del	DEL	CG	CG	-	rs56123940		TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:108115600_108115601delCG	uc001pkb.1	+	7	1133_1134	c.748_749delCG	c.(748-750)CGAfs	p.R250fs	ATM_uc009yxr.1_Frame_Shift_Del_p.R250fs	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	250			R -> Q.		cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		CTTTCGAATTCGAGTGTGTGAA	0.337			NA	D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			20	63	---	---	---	---	NA	NA	NA	NA	NA
ATM	472	broad.mit.edu	37	11	108186559	108186559	+	Frame_Shift_Del	DEL	T	T	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr11:108186559delT	uc001pkb.1	+	41	6401	c.6016delT	c.(6016-6018)TTAfs	p.L2006fs	ATM_uc009yxr.1_Frame_Shift_Del_p.L2006fs|C11orf65_uc010rvx.1_Intron|ATM_uc001pke.1_Frame_Shift_Del_p.L658fs|ATM_uc001pkg.1_Frame_Shift_Del_p.L363fs|ATM_uc009yxt.1_Frame_Shift_Del_p.L120fs	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	2006	FAT.				cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		GGATCTTCTCTTAGAAATCTA	0.323			NA	D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			13	33	---	---	---	---	NA	NA	NA	NA	NA
JUP	3728	broad.mit.edu	37	17	39680687	39680688	+	Frame_Shift_Ins	INS	-	-	T			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:39680687_39680688insT	uc010wfs.1	-	7	1262_1263	c.1254_1255insA	c.(1252-1257)CAATATfs	p.Q418fs	KRT15_uc002hxb.1_5'Flank|uc002hxc.1_5'Flank|KRT19_uc002hxd.3_Frame_Shift_Ins_p.Q255fs	NM_021991	NP_068831	P14923	PLAK_HUMAN	junction plakoglobin	Error:Variant_position_missing_in_P14923_after_alignment					adherens junction organization|atrioventricular valve morphogenesis|cell migration|cell morphogenesis|cellular response to indole-3-methanol|cytoskeletal anchoring at plasma membrane|detection of mechanical stimulus|ectoderm development|endothelial cell-cell adhesion|gastrulation|morphogenesis of embryonic epithelium|negative regulation of heart induction by canonical Wnt receptor signaling pathway|negative regulation of Wnt receptor signaling pathway involved in heart development|nervous system development|oocyte development|positive regulation of protein import into nucleus|positive regulation of sequence-specific DNA binding transcription factor activity|skin development	actin cytoskeleton|Axin-APC-beta-catenin-GSK3B complex|basolateral plasma membrane|catenin complex|desmosome|fascia adherens|gamma-catenin-TCF7L2 complex|internal side of plasma membrane|nucleus|protein-DNA complex|Z disc|zonula adherens	alpha-catenin binding|cadherin binding|protein homodimerization activity|protein kinase binding|protein phosphatase binding|RPTP-like protein binding|specific RNA polymerase II transcription factor activity|transcription coactivator activity			ovary(2)|lung(2)|breast(1)	5		Breast(137;0.000162)	BRCA - Breast invasive adenocarcinoma(4;0.233)	BRCA - Breast invasive adenocarcinoma(366;0.15)		ATGACCTCATATTGGCTTCGCA	0.604	Colon(16;42 520 6044 17852 28530)		NA											13	102	---	---	---	---	NA	NA	NA	NA	NA
SC65	10609	broad.mit.edu	37	17	39964116	39964116	+	Frame_Shift_Del	DEL	G	G	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr17:39964116delG	uc002hxt.2	-	5	1341	c.1057delC	c.(1057-1059)CGGfs	p.R353fs	SC65_uc002hxu.2_Frame_Shift_Del_p.R444fs	NM_006455	NP_006446	Q92791	SC65_HUMAN	synaptonemal complex protein SC65	353	Asp/Glu-rich (acidic).				synaptonemal complex assembly	nucleolus|synaptonemal complex	binding				0		Breast(137;0.000162)		BRCA - Breast invasive adenocarcinoma(366;0.149)		CCCACCTCCCGGGGCTGGAAG	0.483			NA											18	31	---	---	---	---	NA	NA	NA	NA	NA
STK11	6794	broad.mit.edu	37	19	1221254	1221254	+	Frame_Shift_Del	DEL	C	C	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr19:1221254delC	uc002lrl.1	+	6	1892	c.777delC	c.(775-777)AACfs	p.N259fs		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	259	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.?(2)|p.Y246fs*3(1)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGGGGACAACATCTACAAGT	0.582			14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			22	8	---	---	---	---	NA	NA	NA	NA	NA
NCAM2	4685	broad.mit.edu	37	21	22658718	22658718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr21:22658718delC	uc002yld.1	+	4	716	c.467delC	c.(466-468)ACCfs	p.T156fs	NCAM2_uc011acb.1_Intron|NCAM2_uc011acc.1_Frame_Shift_Del_p.T181fs	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	156	Ig-like C2-type 2.|Extracellular (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		GAGGAAGTCACCACTATTTCC	0.383			NA											8	47	---	---	---	---	NA	NA	NA	NA	NA
SBF1	6305	broad.mit.edu	37	22	50894982	50894982	+	Frame_Shift_Del	DEL	G	G	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr22:50894982delG	uc003blh.2	-	30	4220	c.4025delC	c.(4024-4026)CCGfs	p.P1342fs	SBF1_uc003ble.2_5'Flank|SBF1_uc003blf.2_5'Flank|SBF1_uc011arx.1_Frame_Shift_Del_p.P980fs	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1316	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CAGGAAGCCCGGGTCGGGAGG	0.711			NA											2	4	---	---	---	---	NA	NA	NA	NA	NA
ALDH1L1	10840	broad.mit.edu	37	3	125836866	125836866	+	Frame_Shift_Del	DEL	C	C	-			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr3:125836866delC	uc003eim.1	-	17	2154	c.1964delG	c.(1963-1965)GGCfs	p.G655fs	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Frame_Shift_Del_p.G554fs|ALDH1L1_uc003ein.1_5'Flank	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	655	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	GATGTGCTTGCCCACCTCTGT	0.632			NA											18	30	---	---	---	---	NA	NA	NA	NA	NA
PCDH7	5099	broad.mit.edu	37	4	30921902	30921903	+	Frame_Shift_Ins	INS	-	-	A			TCGA-78-7159-01A-11D-2036-08	TCGA-78-7159-10A-01D-2036-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	9319083d-b3d1-48e5-b97f-71b162f9dc7c	c0161396-4ff4-460a-bb15-d3d3520b9194	g.chr4:30921902_30921903insA	uc011bxx.1	+	2	4310_4311	c.3302_3303insA	c.(3301-3303)CCAfs	p.P1101fs	PCDH7_uc011bxw.1_Frame_Shift_Ins_p.P1054fs	NM_002589	NP_002580	O60245	PCDH7_HUMAN	protocadherin 7 isoform a precursor	Error:Variant_position_missing_in_O60245_after_alignment					homophilic cell adhesion	integral to plasma membrane	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|skin(1)	4						TCATCAGGGCCAAGACTGGGTG	0.554			NA											11	43	---	---	---	---	NA	NA	NA	NA	NA
