Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	ACHILLES_Top_Genes	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	982115	982115	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:982115G>T	uc001ack.1	+	18	3300	c.3250G>T	c.(3250-3252)GGG>TGG	p.G1084W		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1084	Ser/Thr-rich.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		TGGCTCTGGGGGTGAGCAGGG	0.672			NA											5	5					0.000602214	0.000676645	0.000602	1	0
CPSF3L	54973	broad.mit.edu	37	1	1256375	1256375	+	Splice_Site	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:1256375C>A	uc001aee.1	-	2	184	c.126_splice	c.e2+1	p.D42_splice	CPSF3L_uc001aef.1_Splice_Site_p.D48_splice|CPSF3L_uc009vjz.1_Splice_Site_p.D42_splice|CPSF3L_uc010nyj.1_Splice_Site_p.D13_splice|CPSF3L_uc001aeg.1_5'UTR|CPSF3L_uc001aeh.1_Splice_Site_p.D42_splice|CPSF3L_uc001aei.1_Intron|CPSF3L_uc001aej.1_Splice_Site_p.T15_splice|CPSF3L_uc001aek.1_Intron|CPSF3L_uc001aem.1_Splice_Site_p.D42_splice|CPSF3L_uc001ael.1_5'UTR|CPSF3L_uc001aen.1_Missense_Mutation_p.V43L	NM_017871	NP_060341	Q5TA45	INT11_HUMAN	cleavage and polyadenylation specific factor							Golgi apparatus|nucleus	hydrolase activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;6.71e-35)|OV - Ovarian serous cystadenocarcinoma(86;4.35e-21)|Colorectal(212;0.000166)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.00235)|BRCA - Breast invasive adenocarcinoma(365;0.00255)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0349)|Lung(427;0.201)		AAGGGACTCACGTCGTCATTG	0.652			NA											16	61					0.00316338	0.00344727	0.003163	1	0
ATAD3A	55210	broad.mit.edu	37	1	1463089	1463089	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:1463089T>C	uc001afz.1	+	14	1590	c.1496T>C	c.(1495-1497)CTG>CCG	p.L499P	ATAD3A_uc001aga.1_Missense_Mutation_p.L451P|ATAD3A_uc001agb.1_Missense_Mutation_p.L372P	NM_018188	NP_060658	Q9NVI7	ATD3A_HUMAN	ATPase family, AAA domain containing 3A	499							ATP binding|nucleoside-triphosphatase activity|protein binding			skin(1)	1	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;1.12e-36)|OV - Ovarian serous cystadenocarcinoma(86;2.18e-22)|Colorectal(212;0.000164)|COAD - Colon adenocarcinoma(227;0.000195)|Kidney(185;0.00233)|BRCA - Breast invasive adenocarcinoma(365;0.00469)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0347)|Lung(427;0.147)		ATGCTGGTCCTGGCCAGCAAC	0.657			NA											9	43					0	0	0.004482	0	0
KIAA1751	85452	broad.mit.edu	37	1	1900241	1900241	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:1900241G>T	uc001aim.1	-	11	1234	c.1078C>A	c.(1078-1080)CAG>AAG	p.Q360K	KIAA1751_uc009vkz.1_Missense_Mutation_p.Q360K	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	360	Potential.									pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		ATGATCTCCTGCTTTCTGAGC	0.577			NA											18	53					3.51602e-12	5.67099e-12	0.008871	1	0
PRDM16	63976	broad.mit.edu	37	1	3328481	3328481	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:3328481G>C	uc001akf.2	+	9	1800	c.1720G>C	c.(1720-1722)GGG>CGG	p.G574R	PRDM16_uc001akc.2_Missense_Mutation_p.G574R|PRDM16_uc001akd.2_Missense_Mutation_p.G574R|PRDM16_uc001ake.2_Missense_Mutation_p.G574R|PRDM16_uc009vlh.2_Missense_Mutation_p.G275R	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	574					brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		GGCAGCTGCGGGGCCCGAGGA	0.667			NA	T	EVI1	MDS|AML								22	15					0	0	0.002299	0	0
NPHP4	261734	broad.mit.edu	37	1	5927116	5927116	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:5927116T>A	uc001alq.1	-	25	3798	c.3532A>T	c.(3532-3534)AAC>TAC	p.N1178Y	NPHP4_uc001alr.1_Missense_Mutation_p.N120Y	NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1178					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		CAGATGACGTTCGGGTCGCTG	0.602			NA											5	5					0	0	0.001168	0	0
KCNAB2	8514	broad.mit.edu	37	1	6142306	6142306	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:6142306G>C	uc009vlv.1	+	6	388	c.253G>C	c.(253-255)GAT>CAT	p.D85H	KCNAB2_uc001alv.1_Missense_Mutation_p.D85H|KCNAB2_uc001alw.1_Missense_Mutation_p.D71H|KCNAB2_uc001alx.1_Missense_Mutation_p.D85H|KCNAB2_uc001aly.1_Missense_Mutation_p.D118H|KCNAB2_uc009vlw.1_Missense_Mutation_p.D18H|KCNAB2_uc001alu.2_Missense_Mutation_p.D85H	NM_003636	NP_003627	Q13303	KCAB2_HUMAN	potassium voltage-gated channel, shaker-related	85		NADP.				cytoplasm|integral to membrane|juxtaparanode region of axon	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity				0	Ovarian(185;0.0634)	all_cancers(23;5.85e-39)|all_epithelial(116;4.88e-22)|all_lung(118;4.21e-08)|Lung NSC(185;9.77e-07)|all_hematologic(16;2.78e-06)|all_neural(13;3.18e-06)|Acute lymphoblastic leukemia(12;0.000272)|Breast(487;0.000496)|Renal(390;0.0007)|Colorectal(325;0.00106)|Glioma(11;0.00203)|Hepatocellular(190;0.00308)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0393)|Medulloblastoma(700;0.211)		Epithelial(90;6.9e-37)|GBM - Glioblastoma multiforme(13;8.8e-31)|OV - Ovarian serous cystadenocarcinoma(86;1.45e-19)|Colorectal(212;2.46e-07)|COAD - Colon adenocarcinoma(227;2.07e-05)|Kidney(185;7.88e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00131)|BRCA - Breast invasive adenocarcinoma(365;0.00133)|STAD - Stomach adenocarcinoma(132;0.00391)|READ - Rectum adenocarcinoma(331;0.0649)		CAACCTCTTCGATACAGCAGA	0.557			NA											24	75					0	0	0.005443	0	0
SLC2A5	6518	broad.mit.edu	37	1	9098496	9098496	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:9098496C>A	uc001apo.2	-	10	1460	c.1168G>T	c.(1168-1170)GGG>TGG	p.G390W	SLC2A5_uc010nzy.1_Missense_Mutation_p.G331W|SLC2A5_uc010nzz.1_Missense_Mutation_p.G275W|SLC2A5_uc010oaa.1_Missense_Mutation_p.G346W|SLC2A5_uc010oab.1_Missense_Mutation_p.G390W	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	390	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GTACTGGGCCCGAGGGCATGT	0.572			NA											22	45					2.21704e-12	3.61011e-12	0.00278	1	0
CASZ1	54897	broad.mit.edu	37	1	10711081	10711081	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:10711081C>A	uc001aro.2	-	12	3053	c.2733G>T	c.(2731-2733)CCG>CCT	p.P911P	CASZ1_uc001arp.1_Silent_p.P911P	NM_001079843	NP_001073312	Q86V15	CASZ1_HUMAN	castor homolog 1, zinc finger isoform a	911					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			skin(1)	1	Ovarian(185;0.203)|all_lung(157;0.204)	Lung NSC(185;4.96e-06)|all_lung(284;1.22e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00212)|Hepatocellular(190;0.00913)|Ovarian(437;0.0229)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;3.54e-08)|COAD - Colon adenocarcinoma(227;9.56e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000219)|Kidney(185;0.00142)|KIRC - Kidney renal clear cell carcinoma(229;0.00381)|READ - Rectum adenocarcinoma(331;0.0419)|STAD - Stomach adenocarcinoma(132;0.0623)		CACCGGGTTCCGGCTTCACTT	0.701			NA											3	16					6.4e-05	7.65288e-05	0.004672	1	0
MTOR	2475	broad.mit.edu	37	1	11194472	11194472	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:11194472C>A	uc001asd.2	-	37	5303	c.5182G>T	c.(5182-5184)GCC>TCC	p.A1728S	MTOR_uc001asc.2_5'Flank	NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	1728	FAT.				cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						GCATGCTGGGCCTGTTGCTGC	0.562			NA											48	34					6.3008e-33	1.21444e-32	0.00361	1	0
VPS13D	55187	broad.mit.edu	37	1	12374349	12374349	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:12374349C>A	uc001atv.2	+	30	7254	c.7113C>A	c.(7111-7113)ACC>ACA	p.T2371T	VPS13D_uc001atw.2_Silent_p.T2371T|VPS13D_uc001atx.2_Silent_p.T1559T|VPS13D_uc001aty.1_Silent_p.T109T	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2371					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ACAGCAGCACCACCCAAGGGT	0.507			NA											12	16					2.27111e-07	3.08624e-07	0.001368	1	0
PRAMEF1	65121	broad.mit.edu	37	1	12853545	12853545	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:12853545C>A	uc001auj.1	+	2	272	c.169C>A	c.(169-171)CAG>AAG	p.Q57K		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	57											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGATGGTTCAGGCCTGGCC	0.547			NA											20	165					1.00905e-13	1.69003e-13	0.008871	1	0
SPEN	23013	broad.mit.edu	37	1	16257201	16257201	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:16257201C>G	uc001axk.1	+	11	4670	c.4466C>G	c.(4465-4467)CCT>CGT	p.P1489R	SPEN_uc010obp.1_Missense_Mutation_p.P1448R	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	1489					interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		GCTCCAAGACCTATTCCATCC	0.378			NA											14	29					0	0	0.001855	0	0
NBPF1	55672	broad.mit.edu	37	1	16893836	16893836	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:16893836C>T	uc009vos.1	-	26	3790	c.2902G>A	c.(2902-2904)GAG>AAG	p.E968K	NBPF1_uc009vot.1_Missense_Mutation_p.E351K|NBPF1_uc001ayz.1_Missense_Mutation_p.E351K|NBPF1_uc010oce.1_Missense_Mutation_p.E622K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	968	NBPF 6.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCCAGCAGCTCCCTGCTGAGC	0.483			NA											28	719					0	0	0.003271	0	0
NBPF1	55672	broad.mit.edu	37	1	16901707	16901707	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:16901707C>T	uc009vos.1	-	20	3025	c.2137G>A	c.(2137-2139)GAT>AAT	p.D713N	NBPF1_uc009vot.1_Missense_Mutation_p.D171N|NBPF1_uc001ayz.1_Missense_Mutation_p.D171N|NBPF1_uc010oce.1_Missense_Mutation_p.D442N	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	713	NBPF 3.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		ACATCTTCATCGTCATCGTTG	0.433			NA											6	372					0	0	0.006214	0	0
CROCC	9696	broad.mit.edu	37	1	17292337	17292337	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:17292337G>C	uc001azt.2	+	28	4594	c.4525G>C	c.(4525-4527)GGG>CGG	p.G1509R	CROCC_uc001azu.2_Missense_Mutation_p.G812R|CROCC_uc001azv.2_5'Flank	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	1509	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		GGCAGTGCGCGGGGCCCTCCG	0.672			NA											14	26					0	0	0.00245	0	0
ARHGEF10L	55160	broad.mit.edu	37	1	18023766	18023766	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:18023766G>T	uc001ban.2	+	29	3890	c.3731G>T	c.(3730-3732)GGG>GTG	p.G1244V	ARHGEF10L_uc001bao.2_Missense_Mutation_p.G1205V|ARHGEF10L_uc001bap.2_Missense_Mutation_p.G1200V|ARHGEF10L_uc001baq.2_Missense_Mutation_p.G1005V|ARHGEF10L_uc010ocs.1_Missense_Mutation_p.G1017V|ARHGEF10L_uc001bar.2_Missense_Mutation_p.G947V|ARHGEF10L_uc009vpf.2_RNA|ARHGEF10L_uc001bas.2_Missense_Mutation_p.G268V	NM_018125	NP_060595	Q9HCE6	ARGAL_HUMAN	Rho guanine nucleotide exchange factor (GEF)	1244					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|ovary(1)|pancreas(1)	3		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00598)|COAD - Colon adenocarcinoma(227;1.62e-05)|BRCA - Breast invasive adenocarcinoma(304;1.68e-05)|Kidney(64;0.000269)|KIRC - Kidney renal clear cell carcinoma(64;0.00361)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0718)|Lung(427;0.204)		ATCTCCGGCGGGCAGGGCTAC	0.687			NA											29	20					6.38683e-12	1.02334e-11	0.008361	1	0
HTR6	3362	broad.mit.edu	37	1	19992779	19992779	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:19992779G>C	uc001bcl.2	+	1	1000	c.533G>C	c.(532-534)GGC>GCC	p.G178A		NM_000871	NP_000862	P50406	5HT6R_HUMAN	5-hydroxytryptamine (serotonin) receptor 6	178	Extracellular (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	histamine receptor activity|protein binding			ovary(1)	1		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;5.81e-05)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00117)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)	Granisetron(DB00889)|Ondansetron(DB00904)|Sertindole(DB06144)	CCCGTCCCTGGCCAGTGCCGC	0.692	Esophageal Squamous(168;1879 2619 6848 21062)		NA											9	37					0	0	0.006214	0	0
MUL1	79594	broad.mit.edu	37	1	20828626	20828626	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:20828626C>T	uc001bdi.3	-	3	422	c.265G>A	c.(265-267)GGG>AGG	p.G89R		NM_024544	NP_078820	Q969V5	MUL1_HUMAN	mitochondrial ubiquitin ligase activator of NFKB	89	Mitochondrial intermembrane (Potential).				activation of caspase activity|activation of JUN kinase activity|induction of apoptosis|mitochondrial fission|mitochondrion localization|negative regulation of cell growth|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to mitochondrial outer membrane|nucleus|peroxisome	identical protein binding|signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00748)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000137)|Kidney(64;0.00017)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)		TGAATTACCCCCTTGCAGTTT	0.463			NA											4	76					0	0	0.009096	0	0
CDA	978	broad.mit.edu	37	1	20915674	20915674	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:20915674C>T	uc001bdk.2	+	1	231	c.52C>T	c.(52-54)CTG>TTG	p.L18L	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_RNA	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	18					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	TGTCCAGCAGCTGCTGGTTTG	0.627	Pancreas(74;49 1356 2772 27818 40529)		NA											8	42					0	0	0.006214	0	0
KIF17	57576	broad.mit.edu	37	1	21031213	21031213	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:21031213G>A	uc001bdr.3	-	5	968	c.850C>T	c.(850-852)CAC>TAC	p.H284Y	KIF17_uc001bds.3_Missense_Mutation_p.H284Y	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	284					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		TAGGGGACGTGCTTACAGCGC	0.662			NA											11	77					0	0	0.001368	0	0
RAP1GAP	5909	broad.mit.edu	37	1	21928224	21928224	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:21928224C>T	uc001bex.2	-	20	1863	c.1605G>A	c.(1603-1605)GAG>GAA	p.E535E	RAP1GAP_uc001bev.2_Silent_p.E620E|RAP1GAP_uc001bew.2_Silent_p.E599E|RAP1GAP_uc001bey.2_Silent_p.E561E	NM_002885	NP_002876	P47736	RPGP1_HUMAN	RAP1 GTPase activating protein isoform c	535					regulation of Ras GTPase activity|signal transduction	cytosol|Golgi membrane|membrane fraction	GTPase activator activity|GTPase activity|protein homodimerization activity|Ras GTPase binding			breast(2)|ovary(1)	3		Colorectal(325;0.000147)|Renal(390;0.000734)|Lung NSC(340;0.000861)|all_lung(284;0.000901)|Breast(348;0.012)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;2.3e-26)|COAD - Colon adenocarcinoma(152;1.59e-05)|GBM - Glioblastoma multiforme(114;2.7e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000354)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00862)|READ - Rectum adenocarcinoma(331;0.0625)|Lung(427;0.146)		TGGATGAGTTCTCCGACTTGG	0.662			NA											4	32					0	0	0.009096	0	0
C1QB	713	broad.mit.edu	37	1	22987440	22987440	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:22987440G>T	uc001bgd.2	+	3	455	c.323G>T	c.(322-324)GGC>GTC	p.G108V		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	108	Collagen-like 2.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GGAGCCCCAGGCCCCAAAGGT	0.637			NA											17	47					9.16793e-09	1.32869e-08	0.00499	1	0
HNRNPR	10236	broad.mit.edu	37	1	23637164	23637164	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:23637164C>A	uc001bgr.3	-	11	1844	c.1685G>T	c.(1684-1686)CGG>CTG	p.R562L	HNRNPR_uc001bgo.2_Missense_Mutation_p.R172L|HNRNPR_uc001bgp.3_Missense_Mutation_p.R565L|HNRNPR_uc009vqk.2_Missense_Mutation_p.R464L|HNRNPR_uc001bgs.3_Missense_Mutation_p.R461L|HNRNPR_uc010odw.1_Missense_Mutation_p.R524L|HNRNPR_uc010odx.1_Missense_Mutation_p.R402L|HNRNPR_uc009vql.2_Missense_Mutation_p.R423L	NM_005826	NP_005817	O43390	HNRPR_HUMAN	heterogeneous nuclear ribonucleoprotein R	562	RNA-binding RGG-box.					catalytic step 2 spliceosome|cytoplasm|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			upper_aerodigestive_tract(1)|skin(1)	2		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00394)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;6.83e-27)|Colorectal(126;6.01e-08)|COAD - Colon adenocarcinoma(152;3.32e-06)|GBM - Glioblastoma multiforme(114;6.69e-05)|BRCA - Breast invasive adenocarcinoma(304;0.00101)|KIRC - Kidney renal clear cell carcinoma(1967;0.00357)|STAD - Stomach adenocarcinoma(196;0.0131)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0875)|LUSC - Lung squamous cell carcinoma(448;0.19)		ACGATTGCCCCGAGATCCACG	0.587			NA											14	66					0.00244969	0.00268503	0.00245	1	0
SYTL1	84958	broad.mit.edu	37	1	27677381	27677381	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:27677381G>T	uc001bnw.1	+	11	1269	c.1102G>T	c.(1102-1104)GAA>TAA	p.E368*	SYTL1_uc001bnv.1_Nonsense_Mutation_p.E356*|SYTL1_uc009vsu.1_Intron|SYTL1_uc001bnx.2_3'UTR|SYTL1_uc009vsv.1_Nonsense_Mutation_p.E368*	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	368	C2 1.				exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GGGCGAAGTTGAAGTGCCCCT	0.692			NA											11	40					3.86212e-05	4.67636e-05	0.008291	1	0
DNAJC8	22826	broad.mit.edu	37	1	28527766	28527766	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:28527766C>A	uc001bpn.2	-	9	788	c.755G>T	c.(754-756)CGT>CTT	p.R252L	DNAJC8_uc001bpo.2_RNA	NM_014280	NP_055095	O75937	DNJC8_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 8	252					nuclear mRNA splicing, via spliceosome|protein folding	nucleoplasm	heat shock protein binding|unfolded protein binding				0		Colorectal(325;3.46e-05)|Lung NSC(340;4.08e-05)|all_lung(284;4.29e-05)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.0105)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		OV - Ovarian serous cystadenocarcinoma(117;2.81e-22)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00275)|BRCA - Breast invasive adenocarcinoma(304;0.0059)|STAD - Stomach adenocarcinoma(196;0.00671)|READ - Rectum adenocarcinoma(331;0.0649)		CGGTCACTCACGTTGCTCCAT	0.512			NA											20	106					1.96292e-10	3.00899e-10	0.010504	1	0
SESN2	83667	broad.mit.edu	37	1	28598184	28598184	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:28598184G>T	uc001bps.2	+	3	510	c.157_splice	c.e3-1	p.V53_splice		NM_031459	NP_113647	P58004	SESN2_HUMAN	sestrin 2						cell cycle arrest	cytoplasm|nucleus				skin(3)|ovary(2)|pancreas(1)|lung(1)	7		Colorectal(325;3.46e-05)|Lung NSC(340;4.37e-05)|all_lung(284;4.76e-05)|Renal(390;0.00121)|Breast(348;0.00345)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0261)		OV - Ovarian serous cystadenocarcinoma(117;2.98e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|READ - Rectum adenocarcinoma(331;0.0649)		TTGGTTGGCAGGTCCTTCGGG	0.567			NA											18	21					6.94344e-10	1.04459e-09	0.006122	1	0
SNRNP40	9410	broad.mit.edu	37	1	31744346	31744346	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:31744346C>A	uc001bso.2	-	6	701	c.655G>T	c.(655-657)GTC>TTC	p.V219F	SNRNP40_uc009vtt.2_5'Flank|SNRNP40_uc010oge.1_Missense_Mutation_p.V219F	NM_004814	NP_004805	Q96DI7	SNR40_HUMAN	WD repeat domain 57 (U5 snRNP specific)	219	WD 4.					catalytic step 2 spliceosome|cytoplasm|nucleoplasm|small nucleolar ribonucleoprotein complex|U5 snRNP	protein binding				0						AGGTCCCAGACCTGCAAAAAC	0.443			NA											7	50					0.000157383	0.000182879	0.00308	1	0
KPNA6	23633	broad.mit.edu	37	1	32623006	32623006	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:32623006G>A	uc001bug.2	+	4	379	c.291G>A	c.(289-291)CAG>CAA	p.Q97Q	KPNA6_uc001buh.2_5'UTR|KPNA6_uc010ogx.1_Silent_p.Q94Q|KPNA6_uc010ogy.1_Silent_p.Q102Q|KPNA6_uc009vtz.2_Silent_p.Q36Q	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	97	ARM 1; truncated.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CTGACCTGCAGTTAGCAACCA	0.383			NA											9	27					0	0	0.006214	0	0
KPNA6	23633	broad.mit.edu	37	1	32627617	32627617	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:32627617A>T	uc001bug.2	+	8	805	c.717A>T	c.(715-717)CGA>CGT	p.R239R	KPNA6_uc001buh.2_Silent_p.R14R|KPNA6_uc010ogx.1_Silent_p.R236R|KPNA6_uc010ogy.1_Silent_p.R244R|KPNA6_uc009vtz.2_Silent_p.R134R	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	239	NLS binding site (major) (By similarity).|ARM 4.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				ATCTCTGCCGAGGGAAAAACC	0.498			NA											11	14					0	0	0.001368	0	0
CSMD2	114784	broad.mit.edu	37	1	34238303	34238303	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:34238303C>G	uc001bxn.1	-	13	1622	c.1593G>C	c.(1591-1593)CGG>CGC	p.R531R	CSMD2_uc001bxm.1_Silent_p.R571R	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	531	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCCTTCCCTCCGGCCATATG	0.522			NA											11	61					0	0	0.008291	0	0
DLGAP3	58512	broad.mit.edu	37	1	35365842	35365842	+	Silent	SNP	G	G	T	rs149715442		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:35365842G>T	uc001byc.2	-	2	1140	c.1140C>A	c.(1138-1140)ACC>ACA	p.T380T		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	380					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CCTTGCCACCGGTGGGGTAAC	0.612			NA											5	86					0.00116845	0.00129404	0.001168	1	0
C1orf216	127703	broad.mit.edu	37	1	36181870	36181870	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:36181870G>A	uc001bzh.1	-	2	541	c.53C>T	c.(52-54)CCA>CTA	p.P18L		NM_152374	NP_689587	Q8TAB5	CA216_HUMAN	hypothetical protein LOC127703	18										skin(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.196)				TCCAGGAGGTGGGTCCCCCAG	0.572			NA									OREG0013357	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	19					0	0	0.00308	0	0
RSPO1	284654	broad.mit.edu	37	1	38095317	38095317	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:38095317C>A	uc001cbl.1	-	4	805	c.17G>T	c.(16-18)TGT>TTT	p.C6F	RSPO1_uc001cbm.1_Missense_Mutation_p.C6F|RSPO1_uc009vvf.1_Intron|RSPO1_uc009vvg.1_Missense_Mutation_p.C6F	NM_001038633	NP_001033722	Q2MKA7	RSPO1_HUMAN	R-spondin1 precursor	6					positive regulation of canonical Wnt receptor signaling pathway|regulation of receptor internalization		heparin binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGCCACCACACACAGCCCAAG	0.642	GBM(122;680 2230 27822 42821)		NA											15	12					5.01169e-05	6.06397e-05	0.00499	1	0
C1orf109	54955	broad.mit.edu	37	1	38155370	38155370	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:38155370C>A	uc001cbp.2	-	2	373	c.183G>T	c.(181-183)CCG>CCT	p.P61P	C1orf109_uc010oig.1_Silent_p.P124P|C1orf109_uc001cbo.2_Silent_p.P123P|C1orf109_uc001cbq.1_Silent_p.P61P|CDCA8_uc001cbr.2_5'Flank|CDCA8_uc001cbs.2_5'Flank	NM_017850	NP_060320	Q9NX04	CA109_HUMAN	hypothetical protein LOC54955	61											0		Myeloproliferative disorder(586;0.0393)				CCCGAAGCGCCGGCACATCCT	0.627			NA											15	46					6.31663e-08	8.85996e-08	0.003163	1	0
EPHA10	284656	broad.mit.edu	37	1	38227570	38227570	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:38227570C>A	uc009vvi.2	-	3	443	c.357G>T	c.(355-357)GCG>GCT	p.A119A	EPHA10_uc001cbw.3_Silent_p.A119A	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	119	Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				TGCAGGTACCCGCGGCGCCAG	0.657			NA											16	121					3.52763e-06	4.5192e-06	0.00499	1	0
MACF1	23499	broad.mit.edu	37	1	39854322	39854322	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:39854322G>C	uc010oiu.1	+	22	11259	c.11128G>C	c.(11128-11130)GAT>CAT	p.D3710H	MACF1_uc010ois.1_Missense_Mutation_p.D3208H|MACF1_uc001cda.1_Missense_Mutation_p.D3095H|MACF1_uc001cdc.1_Missense_Mutation_p.D2274H	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	5275	Spectrin 6.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			ACAATTAGCAGATTTTAAAGT	0.408			NA											7	45					0	0	0.00308	0	0
MACF1	23499	broad.mit.edu	37	1	39920741	39920741	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:39920741G>A	uc010oiu.1	+	54	16507	c.16376G>A	c.(16375-16377)CGA>CAA	p.R5459Q	MACF1_uc010ois.1_Missense_Mutation_p.R4957Q	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	6915					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AACATTGACCGAGTTAAAGCC	0.522			NA											10	46					0	0	0.001368	0	0
HIVEP3	59269	broad.mit.edu	37	1	42045856	42045856	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:42045856G>T	uc001cgz.3	-	4	5826	c.4613C>A	c.(4612-4614)TCT>TAT	p.S1538Y	HIVEP3_uc001cha.3_Missense_Mutation_p.S1538Y|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1538					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				AGGTTTGCCAGATGGCTGGGG	0.547			NA											8	72					0.00307968	0.00336253	0.00308	1	0
ST3GAL3	6487	broad.mit.edu	37	1	44280572	44280572	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:44280572G>A	uc001ckc.2	+	4	353	c.176G>A	c.(175-177)CGG>CAG	p.R59Q	ST3GAL3_uc009vwu.1_RNA|ST3GAL3_uc010okj.1_RNA|ST3GAL3_uc001cjz.2_Missense_Mutation_p.R74Q|ST3GAL3_uc001cka.2_Missense_Mutation_p.R43Q|ST3GAL3_uc001ckb.2_Missense_Mutation_p.R74Q|ST3GAL3_uc001ckd.2_Missense_Mutation_p.R59Q|ST3GAL3_uc001cke.2_Missense_Mutation_p.R43Q|ST3GAL3_uc001ckf.2_Missense_Mutation_p.R43Q|ST3GAL3_uc001ckg.2_Missense_Mutation_p.R59Q|ST3GAL3_uc001ckh.2_Missense_Mutation_p.R74Q|ST3GAL3_uc001cki.2_Missense_Mutation_p.R59Q|ST3GAL3_uc009vwv.2_Missense_Mutation_p.R59Q|ST3GAL3_uc001ckj.2_RNA|ST3GAL3_uc009vww.2_RNA|ST3GAL3_uc001ckk.2_Missense_Mutation_p.R59Q|ST3GAL3_uc009vwy.2_Intron|ST3GAL3_uc009vwx.2_RNA|ST3GAL3_uc001ckm.2_Missense_Mutation_p.R58Q|ST3GAL3_uc001ckl.2_Missense_Mutation_p.R59Q|ST3GAL3_uc009vwz.2_5'UTR|ST3GAL3_uc001ckn.2_RNA|ST3GAL3_uc001ckp.2_Missense_Mutation_p.R58Q|ST3GAL3_uc001cko.2_Missense_Mutation_p.R43Q|ST3GAL3_uc009vxa.2_Intron|ST3GAL3_uc001ckq.2_Missense_Mutation_p.R43Q|ST3GAL3_uc001ckr.2_Missense_Mutation_p.R43Q|ST3GAL3_uc009vxb.2_Missense_Mutation_p.R43Q	NM_006279	NP_006270	Q11203	SIAT6_HUMAN	sialyltransferase 6 isoform j	59	Lumenal (Potential).				protein glycosylation	extracellular region|Golgi cisterna membrane|integral to Golgi membrane	N-acetyllactosaminide alpha-2,3-sialyltransferase activity			ovary(3)	3	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0518)				GAGTATGATCGGTTGGGCTTC	0.468			NA											7	109					0	0	0.00308	0	0
KLF17	128209	broad.mit.edu	37	1	44595237	44595237	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:44595237G>T	uc001clp.2	+	2	352	c.294G>T	c.(292-294)ATG>ATT	p.M98I	KLF17_uc009vxf.1_Missense_Mutation_p.M61I	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	98					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					AGCGTGGTATGAGCTACTGCC	0.567			NA											36	102					8.05343e-35	1.55932e-34	0.00874	1	0
CYP4A22	284541	broad.mit.edu	37	1	47609582	47609582	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:47609582C>A	uc001cqv.1	+	6	835	c.784C>A	c.(784-786)CAC>AAC	p.H262N	CYP4A22_uc009vyo.2_Missense_Mutation_p.H262N|CYP4A22_uc009vyp.2_Intron	NM_001010969	NP_001010969	Q5TCH4	CP4AM_HUMAN	cytochrome P450, family 4, subfamily A,	262						endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding			skin(2)|ovary(1)|breast(1)	4						GGCCCATCAGCACACAGGTTC	0.552	Pancreas(88;1240 1470 2099 14214 37557)		NA											11	78					3.07112e-06	3.94924e-06	0.010729	1	0
KTI12	112970	broad.mit.edu	37	1	52499412	52499412	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:52499412C>T	uc001ctj.1	-	1	61	c.22G>A	c.(22-24)GGG>AGG	p.G8R	TXNDC12_uc001cti.2_Intron	NM_138417	NP_612426	Q96EK9	KTI12_HUMAN	KTI12 homolog, chromatin associated	8	ATP (Potential).						ATP binding			central_nervous_system(2)	2						TACGGCAGCCCGCAAAACACC	0.672			NA											3	13					0	0	0.004672	0	0
ORC1L	4998	broad.mit.edu	37	1	52859452	52859452	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:52859452G>A	uc001ctt.2	-	6	964	c.745C>T	c.(745-747)CAG>TAG	p.Q249*	ORC1L_uc010oni.1_Nonsense_Mutation_p.Q249*|ORC1L_uc001ctu.2_Nonsense_Mutation_p.Q249*|ORC1L_uc009vzd.2_Nonsense_Mutation_p.Q3*	NM_004153	NP_004144	Q13415	ORC1_HUMAN	origin recognition complex, subunit 1	249					cell cycle checkpoint|DNA-dependent DNA replication initiation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nuclear origin of replication recognition complex|nucleolus|nucleoplasm|plasma membrane	ATP binding|DNA binding|nucleoside-triphosphatase activity|protein binding				0						GAAGTCTGCTGGGACATCTGA	0.413			NA											8	26					0	0	0.006214	0	0
DNAJC6	9829	broad.mit.edu	37	1	65858405	65858405	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:65858405G>T	uc001dcd.1	+	12	1753	c.1589G>T	c.(1588-1590)GGT>GTT	p.G530V	DNAJC6_uc001dcc.1_Missense_Mutation_p.G561V|DNAJC6_uc010opc.1_Missense_Mutation_p.G517V|DNAJC6_uc001dce.1_Missense_Mutation_p.G587V	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	530	Poly-Gly.|Pro-rich.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						CTGTTTGGGGGTGGAGGTGCA	0.577			NA											7	21					3.09899e-07	4.18449e-07	0.004482	1	0
LEPR	3953	broad.mit.edu	37	1	66083808	66083808	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:66083808G>C	uc001dci.2	+	16	2576	c.2374G>C	c.(2374-2376)GTT>CTT	p.V792L	LEPR_uc001dcg.2_Missense_Mutation_p.V792L|LEPR_uc001dch.2_Missense_Mutation_p.V792L|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Missense_Mutation_p.V792L|LEPR_uc001dck.2_Missense_Mutation_p.V792L	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	792	Extracellular (Potential).|Fibronectin type-III 4.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		CTCTTCATCTGTTAAGAAGTA	0.284			NA											14	47					0	0	0.00245	0	0
LRRC7	57554	broad.mit.edu	37	1	70478690	70478690	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:70478690C>A	uc001dep.2	+	11	1084	c.1054C>A	c.(1054-1056)CTA>ATA	p.L352I	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	352	LRR 15.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AGTCATGTCTCTACGCTCCAA	0.308			NA											37	85					1.22674e-20	2.27175e-20	0.00874	1	0
C1orf173	127254	broad.mit.edu	37	1	75037774	75037774	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:75037774C>A	uc001dgg.2	-	14	3839	c.3620G>T	c.(3619-3621)GGG>GTG	p.G1207V		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1207	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TTGGCGGTGCCCTTCCTTCAG	0.597			NA											6	90					0.000157383	0.000182879	0.00308	1	0
C1orf173	127254	broad.mit.edu	37	1	75037803	75037803	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:75037803G>T	uc001dgg.2	-	14	3810	c.3591C>A	c.(3589-3591)TCC>TCA	p.S1197S		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1197	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTCCCTGCTGGACAGCTCTT	0.557			NA											32	78					1.62565e-12	2.65987e-12	0.012213	1	0
IFI44	10561	broad.mit.edu	37	1	79116312	79116312	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:79116312G>T	uc001dip.3	+	2	556	c.432G>T	c.(430-432)CAG>CAT	p.Q144H	IFI44_uc010orr.1_Missense_Mutation_p.Q144H|IFI44_uc010ors.1_Intron	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	144					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						TCTCTATTCAGGATTATGAAG	0.338			NA											10	29					7.48243e-07	9.9376e-07	0.006214	1	0
ELTD1	64123	broad.mit.edu	37	1	79383622	79383622	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:79383622G>T	uc001diq.3	-	11	1731	c.1575C>A	c.(1573-1575)AAC>AAA	p.N525K		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	525	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		AAAATCCCTTGTTGTAGATGA	0.413			NA											52	54					9.57592e-29	1.83117e-28	0.00361	1	0
DPYD	1806	broad.mit.edu	37	1	97564188	97564188	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:97564188T>G	uc001drv.2	-	21	2760	c.2623A>C	c.(2623-2625)AAA>CAA	p.K875Q		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	875					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CTTGGCAGTTTCTAAAAGGAA	0.328			NA											3	5					0	0	0.004672	0	0
LPPR5	163404	broad.mit.edu	37	1	99418878	99418878	+	Splice_Site	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:99418878T>A	uc001dsb.2	-	3	593	c.371_splice	c.e3-1	p.G124_splice	LPPR5_uc001dsc.2_Splice_Site_p.G124_splice	NM_001037317	NP_001032394	Q32ZL2	LPPR5_HUMAN	phosphatidic acid phosphatase type 2d isoform 1							integral to membrane	hydrolase activity				0						TATAAATTCCTGGGGAAGAAA	0.289			NA											8	11					0	0	0.00308	0	0
LPPR4	9890	broad.mit.edu	37	1	99771526	99771527	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:99771526_99771527CC>AA	uc001dse.2	+	7	1358_1359	c.1252_1253CC>AA	c.(1252-1254)CCG>AAG	p.P418K	LPPR4_uc010oue.1_Missense_Mutation_p.P360K	NM_014839	NP_055654	Q7Z2D5	LPPR4_HUMAN	plasticity related gene 1	418							phosphatidate phosphatase activity			ovary(3)	3		all_epithelial(167;3.54e-06)|all_lung(203;0.00139)|Lung NSC(277;0.00202)		Epithelial(280;0.0736)|all cancers(265;0.0975)|COAD - Colon adenocarcinoma(174;0.142)|Lung(183;0.201)|Colorectal(170;0.22)		CAATACCTTGCCGCGAGCCAAT	0.5			NA											15	29					0	0	0.004672	0	0
OLFM3	118427	broad.mit.edu	37	1	102296235	102296235	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:102296235T>A	uc001duf.2	-	3	496	c.425A>T	c.(424-426)CAT>CTT	p.H142L	OLFM3_uc001dug.2_Missense_Mutation_p.H122L|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Missense_Mutation_p.H47L|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	142	Potential.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		TACCTGAAAATGCTTGGTCAT	0.408			NA											14	59					0	0	0.004007	0	0
VAV3	10451	broad.mit.edu	37	1	108145771	108145771	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:108145771A>G	uc001dvk.1	-	23	2084	c.2030T>C	c.(2029-2031)ATG>ACG	p.M677T	VAV3_uc010ouu.1_Missense_Mutation_p.M81T|VAV3_uc001dvj.1_Missense_Mutation_p.M117T|VAV3_uc010ouv.1_Missense_Mutation_p.M81T|VAV3_uc010ouw.1_Missense_Mutation_p.M677T	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	677	SH2.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CAATCTTTCCATTGCTCCAGC	0.358			NA											8	40					0	0	0.004482	0	0
VAV3	10451	broad.mit.edu	37	1	108313279	108313279	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:108313279T>G	uc001dvk.1	-	6	681	c.627A>C	c.(625-627)GAA>GAC	p.E209D	VAV3_uc010ouw.1_Missense_Mutation_p.E209D|VAV3_uc001dvl.1_Missense_Mutation_p.E33D|VAV3_uc010oux.1_Missense_Mutation_p.E209D	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	209	DH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		ACTCCAAAGTTTCTGTATATT	0.299			NA											5	43					0	0	0.000602	0	0
VAV3	10451	broad.mit.edu	37	1	108507484	108507484	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:108507484G>T	uc001dvk.1	-	1	62	c.8C>A	c.(7-9)CCG>CAG	p.P3Q	VAV3_uc010ouw.1_Missense_Mutation_p.P3Q|VAV3_uc001dvl.1_5'Flank|VAV3_uc010oux.1_Missense_Mutation_p.P3Q	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	3	CH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		CTGCTTCCACGGCTCCATGCC	0.647			NA											4	7					0.00198382	0.00217721	0.001984	1	0
WDR47	22911	broad.mit.edu	37	1	109554149	109554149	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:109554149T>C	uc001dwj.2	-	5	895	c.519A>G	c.(517-519)GCA>GCG	p.A173A	WDR47_uc001dwl.2_Silent_p.A180A|WDR47_uc001dwi.2_Silent_p.A173A|WDR47_uc001dwk.2_Silent_p.A145A|WDR47_uc010ovf.1_Silent_p.A100A	NM_001142551	NP_001136023	O94967	WDR47_HUMAN	WD repeat domain 47 isoform 3	173										ovary(1)	1		all_lung(203;0.00519)|all_epithelial(167;0.00611)|Lung NSC(277;0.00822)		Colorectal(144;0.0165)|Lung(183;0.0484)|COAD - Colon adenocarcinoma(174;0.128)|Epithelial(280;0.168)|all cancers(265;0.201)|LUSC - Lung squamous cell carcinoma(189;0.244)		GGATGAATTCTGCAACCATGA	0.438			NA											23	127					0	0	0.00333	0	0
CELSR2	1952	broad.mit.edu	37	1	109795090	109795090	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:109795090G>T	uc001dxa.3	+	1	2450	c.2389G>T	c.(2389-2391)GAC>TAC	p.D797Y		NM_001408	NP_001399	Q9HCU4	CELR2_HUMAN	cadherin EGF LAG seven-pass G-type receptor 2	797	Cadherin 6.|Extracellular (Potential).				dendrite morphogenesis|homophilic cell adhesion|neural plate anterior/posterior regionalization|neuropeptide signaling pathway|regulation of cell-cell adhesion|regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(4)|lung(3)|skin(1)	8		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)|Breast(1374;0.244)		Colorectal(144;0.0296)|Lung(183;0.067)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.193)|all cancers(265;0.219)		CCAGAAGTCCGACACCACCTA	0.572	NSCLC(158;1285 2011 34800 34852 42084)		NA											9	23					0.000442599	0.000502282	0.006214	1	0
SLC6A17	388662	broad.mit.edu	37	1	110740984	110740984	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:110740984C>T	uc009wfq.2	+	12	2563	c.2102C>T	c.(2101-2103)TCA>TTA	p.S701L		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	701	Cytoplasmic (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		GGCAGCACATCACCCCTGGAG	0.642			NA											8	39					0	0	0.00308	0	0
PROK1	84432	broad.mit.edu	37	1	110996618	110996618	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:110996618C>A	uc001dzs.2	+	2	159	c.108C>A	c.(106-108)ACC>ACA	p.T36T		NM_032414	NP_115790	P58294	PROK1_HUMAN	prokineticin 1 precursor	36					angiogenesis|positive regulation of cell division	extracellular region	growth factor activity				0		all_cancers(81;6.23e-06)|all_epithelial(167;2.12e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0239)|all cancers(265;0.0699)|Epithelial(280;0.0753)|Colorectal(144;0.105)|LUSC - Lung squamous cell carcinoma(189;0.135)		GGGCAGGCACCTGCTGTGCCA	0.627			NA											4	19					0.000602214	0.000676645	0.000602	1	0
DENND2C	163259	broad.mit.edu	37	1	115130046	115130046	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:115130046G>A	uc001efd.1	-	20	3419	c.2717C>T	c.(2716-2718)TCG>TTG	p.S906L	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.S849L	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	906										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		ACTGGGCTCCGACTCAGGAAT	0.388			NA											47	78					0	0	0.00361	0	0
DENND2C	163259	broad.mit.edu	37	1	115168040	115168040	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:115168040T>A	uc001efd.1	-	4	1268	c.566A>T	c.(565-567)AAG>ATG	p.K189M	DENND2C_uc001eez.2_RNA|DENND2C_uc001efc.1_Missense_Mutation_p.K189M	NM_198459	NP_940861	Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C	189										skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTCTAAGCTCTTGGTTATTCC	0.383			NA											4	34					0	0	0.000602	0	0
HSD3B2	3284	broad.mit.edu	37	1	119964541	119964541	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:119964541C>A	uc001ehs.2	+	3	1190	c.417C>A	c.(415-417)AAC>AAA	p.N139K	HSD3B2_uc001eht.2_Missense_Mutation_p.N139K|HSD3B2_uc001ehu.2_Intron	NM_000198	NP_000189	P26439	3BHS2_HUMAN	3 beta-hydroxysteroid dehydrogenase 2	139					androgen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.015)|LUSC - Lung squamous cell carcinoma(189;0.0836)	NADH(DB00157)|Trilostane(DB01108)	TCATCCAGAACGGCCACGAAG	0.537			NA											30	54					3.73148e-12	6.01281e-12	0.007291	1	0
PDE4DIP	9659	broad.mit.edu	37	1	144903151	144903151	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:144903151C>A	uc001elw.3	-	21	3032	c.2741G>T	c.(2740-2742)CGC>CTC	p.R914L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R980L|PDE4DIP_uc001emc.1_Missense_Mutation_p.R914L|PDE4DIP_uc001emd.1_Missense_Mutation_p.R914L|PDE4DIP_uc001emb.1_Missense_Mutation_p.R1077L|PDE4DIP_uc001eme.1_Intron|PDE4DIP_uc001emf.1_Missense_Mutation_p.R699L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	914	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TAGCCGACTGCGTAACACCTG	0.522			NA	T	PDGFRB	MPD								67	129					8.52622e-23	1.59632e-22	0.00361	1	0
PDE4DIP	9659	broad.mit.edu	37	1	145015899	145015899	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:145015899G>A	uc001elx.3	-	3	524	c.189C>T	c.(187-189)CCC>CCT	p.P63P	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Silent_p.P63P|PDE4DIP_uc001elo.2_Silent_p.P134P|PDE4DIP_uc001emh.2_Silent_p.P134P|uc001emj.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GTACCTGAGGGGGTTTCTCAA	0.458			NA	T	PDGFRB	MPD								14	601					0	0	0.00245	0	0
HFE2	148738	broad.mit.edu	37	1	145414786	145414786	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:145414786G>T	uc001eni.2	+	2	330	c.5G>T	c.(4-6)GGG>GTG	p.G2V	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Intron|HFE2_uc001enk.2_Intron|HFE2_uc001enl.2_Intron	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	2					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					ATAGGTATGGGGGAGCCAGGC	0.567			NA											19	39					1.00905e-13	1.69003e-13	0.008871	1	0
ANKRD35	148741	broad.mit.edu	37	1	145560150	145560150	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:145560150G>T	uc001eob.1	+	8	744	c.636G>T	c.(634-636)GCG>GCT	p.A212A	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Silent_p.A55A	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	212	ANK 5.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GAGCTGACGCGGGGGCTGTGG	0.607	Melanoma(9;127 754 22988 51047)		NA											34	46					3.11337e-16	5.4847e-16	0.002836	1	0
ANKRD35	148741	broad.mit.edu	37	1	145562978	145562978	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:145562978C>A	uc001eob.1	+	10	2774	c.2666C>A	c.(2665-2667)GCC>GAC	p.A889D	NBPF10_uc001emp.3_Intron|ANKRD35_uc010oyx.1_Missense_Mutation_p.A732D	NM_144698	NP_653299	Q8N283	ANR35_HUMAN	ankyrin repeat domain 35	889	Potential.									ovary(4)|skin(1)	5	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					GCTCAGGCAGCCGAACAAGAG	0.647	Melanoma(9;127 754 22988 51047)		NA											6	39					8.12818e-05	9.60912e-05	0.001984	1	0
GJA5	2702	broad.mit.edu	37	1	147230755	147230755	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:147230755C>T	uc001eps.1	-	2	733	c.592G>A	c.(592-594)GTA>ATA	p.V198I	GJA5_uc001ept.1_Missense_Mutation_p.V198I	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	198	Extracellular (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			GGCCGGGATACGTAACAGTTG	0.567			NA											10	34					0	0	0.006214	0	0
TNFAIP8L2	79626	broad.mit.edu	37	1	151131197	151131197	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:151131197C>A	uc001ewx.2	+	2	150	c.24C>A	c.(22-24)AGC>AGA	p.S8R		NM_024575	NP_078851	Q6P589	TP8L2_HUMAN	tumor necrosis factor, alpha-induced protein	8					innate immune response						0	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			GCTCAAAGAGCCTGGCACTGC	0.512			NA											7	47					0.00307968	0.00336253	0.00308	1	0
LINGO4	339398	broad.mit.edu	37	1	151774717	151774717	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:151774717A>G	uc001ezf.1	-	2	654	c.464T>C	c.(463-465)CTA>CCA	p.L155P		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	155	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GAGGCTGCCTAGCTCCCCAAA	0.597			NA											20	97					0	0	0.008871	0	0
TCHH	7062	broad.mit.edu	37	1	152084342	152084342	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152084342G>T	uc001ezp.2	-	2	1351	c.1351C>A	c.(1351-1353)CAG>AAG	p.Q451K	TCHH_uc009wne.1_Missense_Mutation_p.Q451K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	451	9 X 28 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ctctcctcctgctcgcgcttc	0.1			NA											11	41					9.31168e-06	1.16912e-05	0.001855	1	0
HRNR	388697	broad.mit.edu	37	1	152188238	152188238	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152188238G>T	uc001ezt.1	-	3	5943	c.5867C>A	c.(5866-5868)TCT>TAT	p.S1956Y		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1956	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCCAGAACCAGACCCATGTCG	0.617			NA											34	733					2.95478e-19	5.41285e-19	0.00874	1	0
FLG	2312	broad.mit.edu	37	1	152275457	152275457	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152275457G>T	uc001ezu.1	-	3	11941	c.11905C>A	c.(11905-11907)CAA>AAA	p.Q3969K		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3969					keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAACCTGATTGACCTTTTTGC	0.428			NA							Ichthyosis				36	35					2.19358e-23	4.14343e-23	0.005524	1	0
FLG	2312	broad.mit.edu	37	1	152275775	152275775	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152275775C>A	uc001ezu.1	-	3	11623	c.11587G>T	c.(11587-11589)GTT>TTT	p.V3863F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3863	Filaggrin 23.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGGCTAACACTGGATCCC	0.567			NA							Ichthyosis				31	209					1.39806e-14	2.41289e-14	0.008361	1	0
FLG	2312	broad.mit.edu	37	1	152280612	152280612	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152280612C>T	uc001ezu.1	-	3	6786	c.6750G>A	c.(6748-6750)GAG>GAA	p.E2250E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2250	Ser-rich.|Filaggrin 13.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGTGTCCCTCACTGTCAC	0.587			NA							Ichthyosis				64	240					0	0	0.00361	0	0
FLG	2312	broad.mit.edu	37	1	152281738	152281738	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152281738C>A	uc001ezu.1	-	3	5660	c.5624G>T	c.(5623-5625)GGA>GTA	p.G1875V		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1875	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAGCCGTCTCCTGATTGTTT	0.582			NA							Ichthyosis				77	350					1.15413e-51	2.24487e-51	0.00361	1	0
FLG	2312	broad.mit.edu	37	1	152284273	152284273	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152284273C>G	uc001ezu.1	-	3	3125	c.3089G>C	c.(3088-3090)GGA>GCA	p.G1030A	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1030	Filaggrin 6.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGTCTTTCTCCTGGACTTGA	0.562			NA							Ichthyosis				263	319					0	0	0.00361	0	0
FLG2	388698	broad.mit.edu	37	1	152326860	152326860	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152326860G>T	uc001ezw.3	-	3	3475	c.3402C>A	c.(3400-3402)GGC>GGA	p.G1134G	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	1134	Ser-rich.|Filaggrin 4.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATTTACCTGTGCCTGACCCAT	0.532			NA											51	174					2.65591e-33	5.13074e-33	0.00361	1	0
LCE3B	353143	broad.mit.edu	37	1	152586433	152586433	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:152586433T>A	uc010pds.1	+	1	147	c.147T>A	c.(145-147)TCT>TCA	p.S49S		NM_178433	NP_848520	Q5TA77	LCE3B_HUMAN	late cornified envelope 3B	49	Cys-rich.				keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0313)|Kidney(5;0.0367)		GCCCCAGCTCTGAGGGCGGCT	0.657			NA											16	80					0	0	0.003163	0	0
NUP210L	91181	broad.mit.edu	37	1	154108410	154108410	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:154108410G>T	uc001fdw.2	-	7	961	c.889C>A	c.(889-891)CAA>AAA	p.Q297K	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Missense_Mutation_p.Q297K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	297						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CTATGGTCTTGCAATTCCAGT	0.413			NA											9	46					3.86212e-05	4.67636e-05	0.008291	1	0
ATP8B2	57198	broad.mit.edu	37	1	154317158	154317158	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:154317158G>T	uc001fex.2	+	21	2282	c.2282G>T	c.(2281-2283)GGC>GTC	p.G761V		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	747	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			CGCTCCGTAGGCAACGGCTTC	0.552			NA									OREG0013835	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	20	66					3.99206e-14	6.7865e-14	0.007413	1	0
CHRNB2	1141	broad.mit.edu	37	1	154544056	154544056	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:154544056A>T	uc001ffg.2	+	5	1021	c.757A>T	c.(757-759)ATC>TTC	p.I253F		NM_000748	NP_000739	P17787	ACHB2_HUMAN	neuronal nicotinic acetylcholine receptor beta 2	253	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|central nervous system projection neuron axonogenesis|lateral geniculate nucleus development|locomotory behavior|membrane depolarization|memory|negative regulation of action potential|optic nerve morphogenesis|positive regulation of B cell proliferation|positive regulation of dopamine secretion|regulation of circadian sleep/wake cycle, REM sleep|regulation of dendrite morphogenesis|regulation of dopamine metabolic process|regulation of synaptogenesis|response to cocaine|response to ethanol|response to hypoxia|sensory perception of pain|sensory perception of sound|smooth muscle contraction|social behavior|synaptic transmission involved in micturition|synaptic transmission, cholinergic|vestibulocochlear nerve development|visual learning|visual perception	cell junction|external side of plasma membrane|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)		Nicotine(DB00184)	CTCGCTAGCCATCCTTGTCTT	0.537			NA											78	70					0	0	0.00361	0	0
LMNA	4000	broad.mit.edu	37	1	156105882	156105882	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:156105882A>G	uc001fni.2	+	6	1376	c.1127A>G	c.(1126-1128)TAC>TGC	p.Y376C	LMNA_uc001fnf.1_Missense_Mutation_p.Y376C|LMNA_uc001fng.2_Missense_Mutation_p.Y376C|LMNA_uc001fnh.2_Missense_Mutation_p.Y376C|LMNA_uc009wro.1_Missense_Mutation_p.Y376C|LMNA_uc010pgz.1_Missense_Mutation_p.Y264C|LMNA_uc001fnj.2_Missense_Mutation_p.Y295C|LMNA_uc001fnk.2_Missense_Mutation_p.Y277C|LMNA_uc009wrp.2_Missense_Mutation_p.T104A|LMNA_uc010pha.1_Missense_Mutation_p.Y32C	NM_170707	NP_733821	P02545	LMNA_HUMAN	lamin A/C isoform 1 precursor	376	Coil 2.|Rod.				cellular component disassembly involved in apoptosis|cellular response to hypoxia|establishment or maintenance of microtubule cytoskeleton polarity|muscle organ development|positive regulation of cell aging|regulation of apoptosis|regulation of cell migration	cytoplasm|lamin filament|nuclear envelope|nuclear envelope|perinuclear region of cytoplasm	protein binding|structural molecule activity|structural molecule activity			ovary(2)	2	Hepatocellular(266;0.158)					ATCCACGCCTACCGCAAGCTC	0.647			NA							Werner_syndrome|Hutchinson-Gilford_Progeria_Syndrome				7	27					0	0	0.008291	0	0
CCT3	7203	broad.mit.edu	37	1	156280816	156280816	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:156280816C>A	uc001fol.1	-	12	1546	c.1326G>T	c.(1324-1326)CAG>CAT	p.Q442H	CCT3_uc001fom.1_Missense_Mutation_p.Q441H|CCT3_uc001fon.1_Missense_Mutation_p.Q404H|CCT3_uc010phj.1_Missense_Mutation_p.Q396H|CCT3_uc010phk.1_Missense_Mutation_p.Q396H|CCT3_uc010phl.1_Missense_Mutation_p.Q396H	NM_005998	NP_005989	P49368	TCPG_HUMAN	chaperonin containing TCP1, subunit 3 isoform a	442					'de novo' posttranslational protein folding	cytoskeleton|cytosol|plasma membrane	ATP binding|unfolded protein binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.158)					CCTCTAGGGCCTGGGCAACAG	0.577			NA											7	67					0.000157383	0.000182879	0.00308	1	0
GPATCH4	54865	broad.mit.edu	37	1	156565192	156565192	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:156565192C>T	uc001fpm.2	-	8	980	c.941G>A	c.(940-942)GGA>GAA	p.G314E	APOA1BP_uc010php.1_Intron|GPATCH4_uc001fpl.2_Missense_Mutation_p.G309E	NM_015590	NP_056405	Q5T3I0	GPTC4_HUMAN	G patch domain containing 4 isoform 1	309						intracellular	nucleic acid binding			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCCTTTTCCTCCTTCCTCCAA	0.522			NA											42	116					0	0	0.007835	0	0
BCAN	63827	broad.mit.edu	37	1	156617404	156617404	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:156617404C>T	uc001fpp.2	+	4	907	c.571C>T	c.(571-573)CAG>TAG	p.Q191*	BCAN_uc001fpo.2_Nonsense_Mutation_p.Q191*	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	191	Link 1.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CACCCCGGAGCAGCTCTATGC	0.622			NA											10	86					0	0	0.008291	0	0
ARHGEF11	9826	broad.mit.edu	37	1	156906634	156906634	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:156906634T>G	uc001fqo.2	-	39	5524	c.4484A>C	c.(4483-4485)CAT>CCT	p.H1495P	ARHGEF11_uc010phu.1_Missense_Mutation_p.H911P|ARHGEF11_uc001fqn.2_Missense_Mutation_p.H1535P|MIR765_hsa-mir-765|MI0005116_5'Flank	NM_014784	NP_055599	O15085	ARHGB_HUMAN	Rho guanine nucleotide exchange factor (GEF) 11	1495					actin cytoskeleton organization|apoptosis|axon guidance|cellular component movement|cytokinesis|establishment of cell polarity|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of transcription, DNA-dependent|regulation of cell growth|regulation of Rho protein signal transduction|Rho protein signal transduction|striated muscle contraction	cytosol|Golgi apparatus|plasma membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity|signal transducer activity			ovary(3)|skin(2)|pleura(1)|lung(1)|kidney(1)|pancreas(1)	9	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCCCAGTTCATGGCTGTTCCT	0.582			NA											23	103					0	0	0.002299	0	0
FCRL5	83416	broad.mit.edu	37	1	157497563	157497563	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:157497563G>T	uc001fqu.2	-	9	1962	c.1804C>A	c.(1804-1806)CAT>AAT	p.H602N	FCRL5_uc009wsm.2_Missense_Mutation_p.H602N|FCRL5_uc010phv.1_Missense_Mutation_p.H602N|FCRL5_uc010phw.1_Missense_Mutation_p.H517N	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	602	Extracellular (Potential).|Ig-like C2-type 6.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACATCCTCATGATAAAACCAG	0.577			NA											16	73					4.7546e-09	6.98602e-09	0.004007	1	0
FCRL3	115352	broad.mit.edu	37	1	157665394	157665394	+	Missense_Mutation	SNP	G	G	T	rs112099510		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:157665394G>T	uc001frb.2	-	8	1428	c.1136C>A	c.(1135-1137)CCG>CAG	p.P379Q	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.P379Q|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.P105Q|FCRL3_uc001frc.1_Missense_Mutation_p.P379Q	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	379	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					GTGAGATACCGGAACTGAAGG	0.572			NA											12	45					2.80697e-09	4.15305e-09	0.010729	1	0
SPTA1	6708	broad.mit.edu	37	1	158590119	158590119	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:158590119C>T	uc001fst.1	-	44	6457	c.6258G>A	c.(6256-6258)GAG>GAA	p.E2086E		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	2086	Spectrin 20.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CCAAGAAGTCCTCATGGTCTT	0.488			NA											11	35					0	0	0.010729	0	0
OR6K2	81448	broad.mit.edu	37	1	158670034	158670034	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:158670034G>T	uc001fsu.1	-	1	409	c.409C>A	c.(409-411)CCC>ACC	p.P137T		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	137	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					CATAGCTTGGGGGTCATGATA	0.488			NA											12	51					1.08611e-07	1.49384e-07	0.010729	1	0
OR6K2	81448	broad.mit.edu	37	1	158670151	158670151	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:158670151G>C	uc001fsu.1	-	1	292	c.292C>G	c.(292-294)CTG>GTG	p.L98V		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	98	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					TACATCTGCAGGAGACAACCA	0.473			NA											11	48					0	0	0.008291	0	0
OR6K3	391114	broad.mit.edu	37	1	158686986	158686986	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:158686986T>A	uc010pip.1	-	1	968	c.968A>T	c.(967-969)CAA>CTA	p.Q323L		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	323	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAACACTTTTTGAAGACAGAA	0.323			NA											16	96					0	0	0.003163	0	0
IFI16	3428	broad.mit.edu	37	1	158990202	158990202	+	Silent	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:158990202A>C	uc001ftg.2	+	6	1334	c.1044A>C	c.(1042-1044)ACA>ACC	p.T348T	IFI16_uc010pis.1_Silent_p.T292T	NM_005531	NP_005522	Q16666	IF16_HUMAN	interferon, gamma-inducible protein 16	348	HIN-200 1.				cell proliferation|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|monocyte differentiation|negative regulation of transcription, DNA-dependent|response to virus|transcription, DNA-dependent	cytoplasm|nuclear speck|nucleolus	double-stranded DNA binding|protein binding			ovary(1)	1	all_hematologic(112;0.0429)					TAGTGGGGACAGGACAATGTC	0.363			NA											10	31					0	0	0.008291	0	0
OR10J1	26476	broad.mit.edu	37	1	159409967	159409967	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:159409967C>T	uc010piv.1	+	1	419	c.419C>T	c.(418-420)CCC>CTC	p.P140L	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	140	Cytoplasmic (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					ATCTGCAACCCCCTGAGATAC	0.488			NA											23	87					0	0	0.002299	0	0
KCNJ10	3766	broad.mit.edu	37	1	160012258	160012258	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:160012258C>G	uc001fuw.1	-	2	215	c.65G>C	c.(64-66)GGC>GCC	p.G22A		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	22	Cytoplasmic (By similarity).					integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TATCCCTGGGCCCATTAGGGG	0.542	GBM(167;1368 2014 14817 36425 43215)		NA											8	62					0	0	0.004482	0	0
NCSTN	23385	broad.mit.edu	37	1	160313244	160313244	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:160313244C>G	uc001fvx.2	+	1	182	c.58C>G	c.(58-60)CTT>GTT	p.L20V	COPA_uc009wti.2_5'UTR|COPA_uc001fvv.3_5'UTR|COPA_uc009wtj.1_5'UTR|NCSTN_uc009wtk.1_RNA|NCSTN_uc001fvy.2_5'UTR|NCSTN_uc010pjf.1_Missense_Mutation_p.L20V	NM_015331	NP_056146	Q92542	NICA_HUMAN	nicastrin precursor	20					amyloid precursor protein catabolic process|apoptosis|induction of apoptosis by extracellular signals|membrane protein ectodomain proteolysis|membrane protein intracellular domain proteolysis|nerve growth factor receptor signaling pathway|Notch receptor processing|Notch signaling pathway|positive regulation of catalytic activity|protein processing	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane|melanosome	protein binding			ovary(1)|lung(1)	2	all_cancers(52;8.15e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TCTCCTTCGCCTTCTGTCTTT	0.667			NA											7	21					0	0	0.00308	0	0
PVRL4	81607	broad.mit.edu	37	1	161044151	161044151	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:161044151T>A	uc001fxo.2	-	6	1312	c.1013A>T	c.(1012-1014)GAC>GTC	p.D338V	PVRL4_uc010pjy.1_Missense_Mutation_p.D17V|PVRL4_uc010pjz.1_Missense_Mutation_p.D72V	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	338	Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			CTTCCCAGAGTCTTCCTGGGG	0.602	NSCLC(76;1160 1387 14476 16172 29359)		NA											10	36					0	0	0.008291	0	0
NDUFS2	4720	broad.mit.edu	37	1	161179353	161179353	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:161179353C>T	uc001fyv.2	+	6	1043	c.595C>T	c.(595-597)CCT>TCT	p.P199S	NDUFS2_uc010pki.1_Missense_Mutation_p.P101S|NDUFS2_uc001fyw.2_Missense_Mutation_p.P199S|NDUFS2_uc010pkj.1_Missense_Mutation_p.P148S|NDUFS2_uc001fyx.2_Missense_Mutation_p.P199S	NM_004550	NP_004541	O75306	NDUS2_HUMAN	NADH dehydrogenase (ubiquinone) Fe-S protein 2	199					mitochondrial electron transport, NADH to ubiquinone|response to oxidative stress|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|electron carrier activity|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity|protein binding|quinone binding			skin(1)	1	all_cancers(52;1.16e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		NADH(DB00157)	GGCCATGACCCCTTTCTTCTG	0.303			NA									OREG0013941	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	10					0	0	0.008871	0	0
FCRLB	127943	broad.mit.edu	37	1	161693363	161693363	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:161693363A>G	uc001gbh.2	+	5	493	c.259A>G	c.(259-261)ACA>GCA	p.T87A	FCRLB_uc009wus.2_Missense_Mutation_p.T87A|FCRLB_uc001gbj.2_Missense_Mutation_p.T87A|FCRLB_uc001gbk.2_Missense_Mutation_p.T87A|FCRLB_uc001gbl.2_Missense_Mutation_p.T80A|FCRLB_uc001gbm.2_Missense_Mutation_p.T80A|FCRLB_uc001gbi.2_Missense_Mutation_p.T87A|FCRLB_uc001gbn.3_5'Flank	NM_001002901	NP_001002901	Q6BAA4	FCRLB_HUMAN	Fc receptor-like B	87	Ig-like C2-type 1.					endoplasmic reticulum					0	all_hematologic(112;0.0359)		BRCA - Breast invasive adenocarcinoma(70;0.00634)			TCGATGCCAGACACGGGGAGC	0.582			NA											13	42					0	0	0.001855	0	0
OLFML2B	25903	broad.mit.edu	37	1	161976182	161976182	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:161976182C>A	uc001gbu.2	-	4	1052	c.628G>T	c.(628-630)GGC>TGC	p.G210C	OLFML2B_uc010pkq.1_Missense_Mutation_p.G210C	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	210	Potential.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TTTTCTTTGCCTCGCTTATTC	0.448			NA											28	94					1.32181e-22	2.4612e-22	0.007291	1	0
OLFML2B	25903	broad.mit.edu	37	1	161976233	161976233	+	Missense_Mutation	SNP	C	C	T	rs138803828		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:161976233C>T	uc001gbu.2	-	4	1001	c.577G>A	c.(577-579)GAA>AAA	p.E193K	OLFML2B_uc010pkq.1_Missense_Mutation_p.E193K	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	193	Potential.									skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TTGATTTGTTCATTTTCCTTG	0.418			NA											16	59					0	0	0.003163	0	0
RGS4	5999	broad.mit.edu	37	1	163042650	163042650	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:163042650C>A	uc009wuy.2	+	3	716	c.205C>A	c.(205-207)CAT>AAT	p.H69N	RGS4_uc001gcl.3_Missense_Mutation_p.H166N|RGS4_uc009wuz.2_Missense_Mutation_p.H69N|RGS4_uc009wva.2_Missense_Mutation_p.H51N	NM_005613	NP_005604	P49798	RGS4_HUMAN	regulator of G-protein signaling 4 isoform 2	69	RGS.				inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	plasma membrane	calmodulin binding|GTPase activator activity|signal transducer activity			ovary(2)|central_nervous_system(1)	3						CCTGATTAGTCATGAATGTAA	0.403	Ovarian(76;1257 1738 3039 6086)		NA											6	18					5.18039e-06	6.58689e-06	0.00308	1	0
RXRG	6258	broad.mit.edu	37	1	165380219	165380219	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:165380219T>C	uc001gda.2	-	5	1050	c.750A>G	c.(748-750)ACA>ACG	p.T250T		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	250	Hinge.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	CATAGGATTCTGTCTTTGGTT	0.478			NA											14	41					0	0	0.003163	0	0
POGK	57645	broad.mit.edu	37	1	166818420	166818420	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:166818420G>A	uc001gdt.1	+	5	724	c.604G>A	c.(604-606)GCA>ACA	p.A202T	POGK_uc010ple.1_Missense_Mutation_p.A117T|POGK_uc010plf.1_Missense_Mutation_p.A84T	NM_017542	NP_060012	Q9P215	POGK_HUMAN	pogo transposable element with KRAB domain	202					multicellular organismal development|regulation of transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						CAGTTACGACGCAGGGTTCAA	0.542	GBM(76;192 1530 30153 48742)		NA											9	35					0	0	0.006214	0	0
MAEL	84944	broad.mit.edu	37	1	166973514	166973514	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:166973514A>T	uc001gdy.1	+	6	692	c.621A>T	c.(619-621)CCA>CCT	p.P207P	MAEL_uc001gdz.1_Silent_p.P176P|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	207					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						ATCCCAACCCAGGGAACTGGC	0.348			NA											5	41					0	0	0.000602	0	0
MAEL	84944	broad.mit.edu	37	1	166990948	166990948	+	Silent	SNP	C	C	T	rs146423777		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:166990948C>T	uc001gdy.1	+	12	1232	c.1161C>T	c.(1159-1161)AGC>AGT	p.S387S	MAEL_uc001gdz.1_Silent_p.S356S|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	387					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						AAAACAGCAGCGTTCGGGGAA	0.378			NA											23	20					0	0	0.00333	0	0
DUSP27	92235	broad.mit.edu	37	1	167097512	167097512	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:167097512C>T	uc001geb.1	+	5	3144	c.3144C>T	c.(3142-3144)TCC>TCT	p.S1048S		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1048					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCCCAGAGTCCTCAGAAAGGG	0.562			NA											6	25					0	0	0.001984	0	0
F5	2153	broad.mit.edu	37	1	169519150	169519150	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:169519150G>A	uc001ggg.1	-	10	1645	c.1500C>T	c.(1498-1500)TGC>TGT	p.C500C	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	500	F5/8 type A 2.|Plastocyanin-like 3.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	GTCTTGTTAAGCACTGGGCAT	0.453			NA											36	46					0	0	0.003271	0	0
TNN	63923	broad.mit.edu	37	1	175067674	175067674	+	Missense_Mutation	SNP	G	G	T	rs149504279		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:175067674G>T	uc001gkl.1	+	9	2175	c.2062G>T	c.(2062-2064)GTG>TTG	p.V688L	TNN_uc010pmx.1_Missense_Mutation_p.V599L	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	688	Fibronectin type-III 5.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		CATGGTGCACGTGTGGGCCCA	0.612			NA											21	78					2.44723e-14	4.19384e-14	0.004656	1	0
TNN	63923	broad.mit.edu	37	1	175097863	175097863	+	Missense_Mutation	SNP	C	C	A	rs113025105	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:175097863C>A	uc001gkl.1	+	15	3424	c.3311C>A	c.(3310-3312)ACG>AAG	p.T1104K		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1104	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GACATGGAAACGGACGGAGGT	0.587			NA											8	45					0.000274275	0.000314197	0.004482	1	0
TNR	7143	broad.mit.edu	37	1	175331847	175331847	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:175331847C>T	uc001gkp.1	-	12	2887	c.2806G>A	c.(2806-2808)GTG>ATG	p.V936M	TNR_uc009wwu.1_Missense_Mutation_p.V936M	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	936	Fibronectin type-III 7.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CTGCCCCGCACGCTGTTGAGG	0.552			NA											19	62					0	0	0.006122	0	0
RFWD2	64326	broad.mit.edu	37	1	175996778	175996778	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:175996778C>A	uc001gku.1	-	15	1915	c.1659G>T	c.(1657-1659)GAG>GAT	p.E553D	RFWD2_uc001gkv.1_Missense_Mutation_p.E529D|RFWD2_uc001gkw.1_Missense_Mutation_p.E313D|RFWD2_uc009wwv.2_Missense_Mutation_p.E352D|RFWD2_uc001gkt.1_Missense_Mutation_p.E392D	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	553	WD 4.				DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						TAGCCTTTGCCTCAATGCTTG	0.403	Ovarian(134;1413 1765 5706 35534 51541)		NA											9	22					3.86212e-05	4.67636e-05	0.008291	1	0
PAPPA2	60676	broad.mit.edu	37	1	176708847	176708847	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:176708847C>A	uc001gkz.2	+	13	5048	c.3884C>A	c.(3883-3885)CCG>CAG	p.P1295Q	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1295					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CATCAGCAGCCGACAGTGACT	0.483			NA											11	27					1.08611e-07	1.49384e-07	0.010729	1	0
PAPPA2	60676	broad.mit.edu	37	1	176734887	176734887	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:176734887G>C	uc001gkz.2	+	15	5401	c.4237G>C	c.(4237-4239)GGC>CGC	p.G1413R	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1413	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TACCTCTATAGGCCCAGGTCT	0.517			NA											24	85					0	0	0.00333	0	0
PAPPA2	60676	broad.mit.edu	37	1	176809373	176809373	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:176809373G>C	uc001gkz.2	+	22	6431	c.5267G>C	c.(5266-5268)GGA>GCA	p.G1756A	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1756					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TATGACGGGGGAGACTGCTGC	0.537			NA											23	95					0	0	0.00333	0	0
PAPPA2	60676	broad.mit.edu	37	1	176811528	176811528	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:176811528G>T	uc001gkz.2	+	23	6478	c.5314G>T	c.(5314-5316)GCT>TCT	p.A1772S	PAPPA2_uc009www.2_RNA|uc001gla.1_5'Flank	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1772					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						CATTCCATTTGCTGCTGACTG	0.502			NA											5	33					2.0095e-06	2.62175e-06	0.001984	1	0
ASTN1	460	broad.mit.edu	37	1	176857216	176857216	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:176857216G>C	uc001glc.2	-	18	3277	c.3065C>G	c.(3064-3066)CCA>CGA	p.P1022R	ASTN1_uc001glb.1_Missense_Mutation_p.P1022R|ASTN1_uc001gld.1_Missense_Mutation_p.P1022R	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1030	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CACAGGCTGTGGGAGAGGCGC	0.393			NA											3	52					0	0	0.004672	0	0
ASTN1	460	broad.mit.edu	37	1	177133679	177133679	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:177133679A>T	uc001glc.2	-	1	346	c.134T>A	c.(133-135)CTG>CAG	p.L45Q	ASTN1_uc001glb.1_Missense_Mutation_p.L45Q|ASTN1_uc001gld.1_Missense_Mutation_p.L45Q|ASTN1_uc009wwx.1_Missense_Mutation_p.L45Q	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	45					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						CAGGAAGGGCAGTGCCGACAC	0.662			NA											8	26					0	0	0.008291	0	0
C1orf49	84066	broad.mit.edu	37	1	178485794	178485794	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:178485794T>A	uc001glt.1	+	5	373	c.261T>A	c.(259-261)TTT>TTA	p.F87L	C1orf49_uc001glu.1_Missense_Mutation_p.F87L|C1orf49_uc001glv.1_RNA|C1orf49_uc001glw.1_Missense_Mutation_p.F95L	NM_032126	NP_115502	Q5T0J7	CA049_HUMAN	hypothetical protein LOC84066	87	Potential.					microtubule cytoskeleton					0						TTCACGAATTTGTGGAAATTA	0.214			NA											4	15					0	0	0.000602	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179870504	179870504	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:179870504G>T	uc001gnq.2	+	5	938	c.720G>T	c.(718-720)AGG>AGT	p.R240S	TOR1AIP1_uc001gnp.1_Missense_Mutation_p.R241S	NM_015602	NP_056417	Q5JTV8	TOIP1_HUMAN	lamina-associated polypeptide 1B	240	Nuclear (Potential).					integral to membrane|nuclear inner membrane				breast(1)|central_nervous_system(1)	2						CCAGATCCAGGGATTCTGATG	0.333			NA											5	24					0.000602214	0.000676645	0.000602	1	0
CACNA1E	777	broad.mit.edu	37	1	181707532	181707532	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:181707532G>T	uc001gow.2	+	24	3747	c.3582G>T	c.(3580-3582)ACG>ACT	p.T1194T	CACNA1E_uc009wxs.2_Silent_p.T1082T|CACNA1E_uc001gox.1_Silent_p.T420T|CACNA1E_uc009wxt.2_Silent_p.T420T	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1194	III.|Helical; Name=S2 of repeat III.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						ATGTGTTCACGGGCGTGTTCA	0.473			NA											108	121					1.09637e-55	2.13741e-55	0.00361	1	0
LAMC1	3915	broad.mit.edu	37	1	183106963	183106963	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:183106963G>T	uc001gpy.3	+	26	4730	c.4473_splice	c.e26+1	p.M1491_splice		NM_002293	NP_002284	P11047	LAMC1_HUMAN	laminin, gamma 1 precursor						axon guidance|cell migration|endoderm development|extracellular matrix disassembly|hemidesmosome assembly|positive regulation of epithelial cell proliferation|protein complex assembly|substrate adhesion-dependent cell spreading	extracellular space|laminin-1 complex|laminin-10 complex|laminin-11 complex	extracellular matrix structural constituent			ovary(3)|large_intestine(1)|kidney(1)	5					Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCAGGGATGGTAAGAGGTTT	0.383			NA											12	11					5.50884e-06	6.94735e-06	0.001368	1	0
SMG7	9887	broad.mit.edu	37	1	183514116	183514116	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:183514116G>T	uc001gqg.2	+	16	2161	c.2039G>T	c.(2038-2040)GGC>GTC	p.G680V	SMG7_uc010pob.1_Missense_Mutation_p.G663V|SMG7_uc001gqf.2_Missense_Mutation_p.G634V|SMG7_uc001gqh.2_Missense_Mutation_p.G634V|SMG7_uc001gqi.2_Missense_Mutation_p.G592V|SMG7_uc010poc.1_Missense_Mutation_p.G638V	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	680	Gln/Pro-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TTTTCTATGGGCTCAGGTTAC	0.488			NA											17	151					3.41278e-10	5.20335e-10	0.00499	1	0
FAM129A	116496	broad.mit.edu	37	1	184764355	184764355	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:184764355G>A	uc001gra.2	-	14	2737	c.2543C>T	c.(2542-2544)TCT>TTT	p.S848F	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	848	Glu-rich.				negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						GATGGGGTCAGAACCTAAGGT	0.602			NA											7	58					0	0	0.001984	0	0
FAM129A	116496	broad.mit.edu	37	1	184764954	184764954	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:184764954G>A	uc001gra.2	-	14	2138	c.1944C>T	c.(1942-1944)CCC>CCT	p.P648P	FAM129A_uc001grb.1_Intron	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	648					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						TCCCATCTGGGGGTGGGCTTG	0.557			NA											14	46					0	0	0.004007	0	0
C1orf26	54823	broad.mit.edu	37	1	185153929	185153929	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:185153929G>T	uc001grg.3	+	9	1409	c.1295G>T	c.(1294-1296)CGT>CTT	p.R432L	C1orf26_uc001grh.3_Missense_Mutation_p.R432L	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	432	PINc.										0						GAGCTAGATCGTATGAAGGAA	0.323			NA											8	56					5.4927e-09	8.0151e-09	0.004482	1	0
C1orf26	54823	broad.mit.edu	37	1	185191038	185191038	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:185191038G>T	uc001grg.3	+	15	2293	c.2179G>T	c.(2179-2181)GGT>TGT	p.G727C	C1orf26_uc001grh.3_Missense_Mutation_p.G727C	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	727											0						AAAGCAGGAAGGTACTTCATT	0.373			NA											23	101					5.26018e-13	8.69874e-13	0.012319	1	0
HMCN1	83872	broad.mit.edu	37	1	186059943	186059943	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:186059943G>T	uc001grq.1	+	64	10010	c.9781G>T	c.(9781-9783)GGA>TGA	p.G3261*		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3261	Ig-like C2-type 31.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGTCCTTCTAGGAGAAAATGT	0.398			NA											12	39					2.27111e-07	3.08624e-07	0.001368	1	0
TPR	7175	broad.mit.edu	37	1	186340118	186340118	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:186340118C>G	uc001grv.2	-	3	611	c.314G>C	c.(313-315)CGC>CCC	p.R105P	TPR_uc010pop.1_Missense_Mutation_p.R181P	NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	105	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		GGCAATATTGCGATCCTGAGC	0.313			NA	T	NTRK1	papillary thyroid								8	49					0	0	0.004482	0	0
TPR	7175	broad.mit.edu	37	1	186342569	186342569	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:186342569T>A	uc001grv.2	-	2	475	c.178A>T	c.(178-180)AGG>TGG	p.R60W	C1orf27_uc001grw.2_5'Flank|C1orf27_uc010poq.1_5'Flank|C1orf27_uc010por.1_5'Flank|TPR_uc010pop.1_Missense_Mutation_p.R136W	NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	60	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		TGGGACAACCTCTTTTCTATT	0.348			NA	T	NTRK1	papillary thyroid								4	30					0	0	0.000602	0	0
RGS18	64407	broad.mit.edu	37	1	192150512	192150512	+	Missense_Mutation	SNP	G	G	T	rs112220830		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:192150512G>T	uc001gsg.2	+	4	550	c.374G>T	c.(373-375)AGC>ATC	p.S125I		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	125	RGS.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						TTCAAGAAAAGCAAGGGACCT	0.328			NA											17	21					1.5739e-10	2.42797e-10	0.004007	1	0
CFHR3	10878	broad.mit.edu	37	1	196762605	196762605	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:196762605T>A	uc001gtl.2	+	6	1042	c.955T>A	c.(955-957)TGT>AGT	p.C319S	CFHR3_uc010poy.1_Missense_Mutation_p.C258S|CFHR1_uc001gtm.2_Intron	NM_021023	NP_066303	Q02985	FHR3_HUMAN	complement factor H-related 3 precursor	319	Sushi 5.					extracellular space					0						TCAAGCAGTGTGTCGGGAAGG	0.373			NA											14	66					0	0	0.003163	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200821748	200821748	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:200821748C>T	uc001gvl.2	+	13	3848	c.3578C>T	c.(3577-3579)ACT>ATT	p.T1193I	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.T1182I|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.T1166I	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	1193						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GAAAAGGAAACTCAGCTCCGG	0.398			NA											7	38					0	0	0.00308	0	0
KIF21B	23046	broad.mit.edu	37	1	200971298	200971298	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:200971298C>A	uc001gvs.1	-	9	1710	c.1393G>T	c.(1393-1395)GCC>TCC	p.A465S	KIF21B_uc001gvr.1_Missense_Mutation_p.A465S|KIF21B_uc009wzl.1_Missense_Mutation_p.A465S|KIF21B_uc010ppn.1_Missense_Mutation_p.A465S|KIF21B_uc001gvt.1_3'UTR	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	465	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CCGGCCTTGGCTAGCAGCAGG	0.642			NA											21	26					1.01871e-10	1.57581e-10	0.008871	1	0
CACNA1S	779	broad.mit.edu	37	1	201046249	201046249	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:201046249C>T	uc001gvv.2	-	12	1853	c.1626G>A	c.(1624-1626)TGG>TGA	p.W542*		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	542	II.|Helical; Name=S4 of repeat II; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TCAGCGACGTCCAATATCTGA	0.597			NA											11	19					0	0	0.010729	0	0
LGR6	59352	broad.mit.edu	37	1	202270015	202270015	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:202270015A>T	uc001gxu.2	+	8	824	c.824A>T	c.(823-825)AAG>ATG	p.K275M	LGR6_uc001gxv.2_Missense_Mutation_p.K223M|LGR6_uc009xab.2_RNA|LGR6_uc001gxw.2_Missense_Mutation_p.K136M|LGR6_uc009xac.1_RNA	NM_001017403	NP_001017403	Q9HBX8	LGR6_HUMAN	leucine-rich repeat-containing G protein-coupled	275	LRR 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein-hormone receptor activity			large_intestine(4)|ovary(3)|skin(2)|pancreas(1)	10						ATCCCAGAAAAGGCCTTCATG	0.502			NA											18	77					0	0	0.006122	0	0
PLEKHA6	22874	broad.mit.edu	37	1	204228631	204228631	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:204228631G>A	uc001hau.2	-	8	1079	c.762C>T	c.(760-762)CCC>CCT	p.P254P	PLEKHA6_uc009xaw.1_5'Flank|PLEKHA6_uc009xax.1_5'Flank|PLEKHA6_uc009xay.1_5'Flank|PLEKHA6_uc009xaz.1_5'Flank|PLEKHA6_uc009xba.1_5'Flank|PLEKHA6_uc009xbb.1_5'Flank|PLEKHA6_uc009xbc.1_5'Flank	NM_014935	NP_055750	Q9Y2H5	PKHA6_HUMAN	phosphoinositol 3-phosphate-binding protein-3	254	Pro-rich.									ovary(3)|pancreas(1)	4	all_cancers(21;0.0222)|Breast(84;0.179)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|BRCA - Breast invasive adenocarcinoma(75;0.0833)|Kidney(21;0.0934)|Epithelial(59;0.229)			TTGGGCCCTCGGGGTAAGGGC	0.662			NA											7	38					0	0	0.001984	0	0
RBBP5	5929	broad.mit.edu	37	1	205064008	205064008	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:205064008G>A	uc001hbu.1	-	13	1711	c.1581C>T	c.(1579-1581)CCC>CCT	p.P527P	RBBP5_uc010prd.1_Silent_p.P562P|RBBP5_uc001hbv.1_Intron|RBBP5_uc010pre.1_Silent_p.P394P	NM_005057	NP_005048	Q15291	RBBP5_HUMAN	retinoblastoma binding protein 5	527					histone H3-K4 methylation|regulation of transcription, DNA-dependent|response to estrogen stimulus|transcription, DNA-dependent	MLL1 complex|Set1C/COMPASS complex	methylated histone residue binding|transcription regulatory region DNA binding			lung(1)	1	Breast(84;0.0505)		BRCA - Breast invasive adenocarcinoma(75;0.0923)			TACCTGTCAAGGGCTGGCTGA	0.483			NA											23	103					0	0	0.003954	0	0
FAM71A	149647	broad.mit.edu	37	1	212798530	212798530	+	Missense_Mutation	SNP	C	C	A	rs144071564	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:212798530C>A	uc001hjk.2	+	1	715	c.311C>A	c.(310-312)GCC>GAC	p.A104D	uc010pth.1_Intron	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	104										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		CATGGCCAGGCCACCAAGAGA	0.547			NA											24	49					6.21321e-17	1.10602e-16	0.00278	1	0
CENPF	1063	broad.mit.edu	37	1	214803990	214803990	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:214803990G>C	uc001hkm.2	+	9	1482	c.1308G>C	c.(1306-1308)CAG>CAC	p.Q436H		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	436	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).|Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		ACGTCCTGCAGGCTGAACTGG	0.478	Colon(80;575 1284 11000 14801 43496)		NA											17	68					0	0	0.00499	0	0
USH2A	7399	broad.mit.edu	37	1	215847454	215847454	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:215847454T>A	uc001hku.1	-	63	14186	c.13799A>T	c.(13798-13800)AAG>ATG	p.K4600M		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4600	Fibronectin type-III 31.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GTGAAATGGCTTCAGCTGGTT	0.398			NA								HNSCC(13;0.011)			19	48					0	0	0.008871	0	0
USH2A	7399	broad.mit.edu	37	1	215847984	215847984	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:215847984G>T	uc001hku.1	-	63	13656	c.13269C>A	c.(13267-13269)GCC>GCA	p.A4423A		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	4423	Extracellular (Potential).|Fibronectin type-III 29.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CATTCGTGCAGGCTACAAGGG	0.507			NA								HNSCC(13;0.011)			12	36					5.50884e-06	6.94735e-06	0.001368	1	0
USH2A	7399	broad.mit.edu	37	1	216052381	216052381	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:216052381C>A	uc001hku.1	-	42	8670	c.8283G>T	c.(8281-8283)ATG>ATT	p.M2761I		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2761	Fibronectin type-III 14.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GAGGGTCAGGCATGTGAATCT	0.403			NA								HNSCC(13;0.011)			13	90					1.3612e-06	1.79244e-06	0.003163	1	0
USH2A	7399	broad.mit.edu	37	1	216462717	216462717	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:216462717G>C	uc001hku.1	-	11	2263	c.1876C>G	c.(1876-1878)CGA>GGA	p.R626G	USH2A_uc001hkv.2_Missense_Mutation_p.R626G	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	626	Laminin EGF-like 2.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		CCAACTTGTCGGAAAAAGTAA	0.413			NA								HNSCC(13;0.011)			7	43					0	0	0.006214	0	0
USH2A	7399	broad.mit.edu	37	1	216495284	216495284	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:216495284T>C	uc001hku.1	-	9	1972	c.1585A>G	c.(1585-1587)ACA>GCA	p.T529A	USH2A_uc001hkv.2_Missense_Mutation_p.T529A	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	529	Laminin EGF-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGGCTTGTTGTGTCGCAGTTA	0.423			NA								HNSCC(13;0.011)			8	76					0	0	0.008291	0	0
USH2A	7399	broad.mit.edu	37	1	216498711	216498711	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:216498711G>T	uc001hku.1	-	6	1466	c.1079C>A	c.(1078-1080)ACA>AAA	p.T360K	USH2A_uc001hkv.2_Missense_Mutation_p.T360K	NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	360	Laminin N-terminal.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TGTAATGTTTGTAAACACATT	0.353			NA								HNSCC(13;0.011)			8	56					0.000157383	0.000182879	0.00308	1	0
TP53BP2	7159	broad.mit.edu	37	1	223984286	223984286	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:223984286C>G	uc010pvb.1	-	13	2247	c.1955G>C	c.(1954-1956)GGT>GCT	p.G652A	TP53BP2_uc001hod.2_Missense_Mutation_p.G523A|TP53BP2_uc010puz.1_5'UTR|TP53BP2_uc010pva.1_Missense_Mutation_p.G291A	NM_001031685	NP_001026855	Q13625	ASPP2_HUMAN	tumor protein p53 binding protein, 2 isoform 1	646					apoptosis|cell cycle|induction of apoptosis|negative regulation of cell cycle|signal transduction	nucleus|perinuclear region of cytoplasm	NF-kappaB binding|protein binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(2)|lung(1)	3				GBM - Glioblastoma multiforme(131;0.0958)		TACAGGCTTACCATATACTAA	0.403			NA											8	82					0	0	0.004482	0	0
LEFTY1	10637	broad.mit.edu	37	1	226075184	226075184	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:226075184G>C	uc001hpo.2	-	3	722	c.652C>G	c.(652-654)CTG>GTG	p.L218V	LEFTY1_uc010pvj.1_Missense_Mutation_p.A326G	NM_020997	NP_066277	O75610	LFTY1_HUMAN	left-right determination, factor B	218					cell growth|multicellular organismal development|transforming growth factor beta receptor signaling pathway	extracellular space	cytokine activity|growth factor activity|transforming growth factor beta receptor binding				0	Breast(184;0.197)					AAGCGGACCAGCTTGTGGGCG	0.701			NA											4	43					0	0	0.000602	0	0
C1orf95	375057	broad.mit.edu	37	1	226784531	226784531	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:226784531G>T	uc010pvn.1	+	2	336	c.231G>T	c.(229-231)CTG>CTT	p.L77L		NM_001003665	NP_001003665	Q69YW2	CA095_HUMAN	hypothetical protein LOC375057	77						integral to membrane				ovary(1)	1	Breast(184;0.133)	Prostate(94;0.0885)		GBM - Glioblastoma multiforme(131;0.113)		TCACTGTGCTGTGCGGGGCCC	0.612			NA											17	87					1.56452e-12	2.56232e-12	0.007413	1	0
CDC42BPA	8476	broad.mit.edu	37	1	227348267	227348267	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:227348267G>C	uc001hqr.2	-	6	1613	c.670C>G	c.(670-672)CTG>GTG	p.L224V	CDC42BPA_uc001hqs.2_Missense_Mutation_p.L224V|CDC42BPA_uc009xes.2_Missense_Mutation_p.L224V|CDC42BPA_uc010pvs.1_Missense_Mutation_p.L224V	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	224	Protein kinase.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				ATCAGCTTCAGACAAGAACCA	0.299			NA											11	73					0	0	0.010729	0	0
PRSS38	339501	broad.mit.edu	37	1	228003799	228003799	+	Silent	SNP	C	C	A	rs138900240		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:228003799C>A	uc001hrh.2	+	2	157	c.157C>A	c.(157-159)CGG>AGG	p.R53R		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	53					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						AGCCTGTGGTCGGCCCAGCAT	0.527			NA											15	53					1.99824e-07	2.73291e-07	0.00499	1	0
OBSCN	84033	broad.mit.edu	37	1	228505766	228505766	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:228505766G>C	uc009xez.1	+	53	14067	c.14023G>C	c.(14023-14025)GGT>CGT	p.G4675R	OBSCN_uc001hsn.2_Missense_Mutation_p.G4675R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4675	Ig-like 47.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGTCTCCCAGGGTCGGCAACA	0.642			NA											19	72					0	0	0.010504	0	0
C1orf124	83932	broad.mit.edu	37	1	231488891	231488891	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:231488891C>T	uc001hur.2	+	5	1702	c.1254C>T	c.(1252-1254)GAC>GAT	p.D418D	C1orf124_uc001hus.2_3'UTR|C1orf124_uc001hut.2_3'UTR	NM_032018	NP_114407	Q9H040	CA124_HUMAN	hypothetical protein LOC83932 isoform a	418					DNA repair	nuclear speck	DNA binding|metal ion binding				0	Breast(184;0.0871)	all_cancers(173;0.151)|Prostate(94;0.183)				CTGTTTTTGACAATTTTTTTA	0.398	Esophageal Squamous(43;65 937 18756 45127 47168)		NA											10	26					0	0	0.008291	0	0
LYST	1130	broad.mit.edu	37	1	235972423	235972423	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:235972423G>A	uc001hxj.2	-	5	1870	c.1695C>T	c.(1693-1695)TCC>TCT	p.S565S	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Silent_p.S565S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	565					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TGCTGCTCAAGGAAGCCTGCT	0.458			NA							Chediak-Higashsyndrome				18	76					0	0	0.008871	0	0
RYR2	6262	broad.mit.edu	37	1	237666694	237666694	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:237666694G>A	uc001hyl.1	+	22	2622	c.2502G>A	c.(2500-2502)GTG>GTA	p.V834V		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	834	Cytoplasmic (By similarity).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGTTGAAAGTGGAACACAGCC	0.507			NA											13	49					0	0	0.001368	0	0
RYR2	6262	broad.mit.edu	37	1	237777402	237777402	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:237777402C>A	uc001hyl.1	+	37	5094	c.4974C>A	c.(4972-4974)CTC>CTA	p.L1658L		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1658	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATCACACTCTCCGGCTCTACT	0.498			NA											7	33					8.12818e-05	9.60912e-05	0.001984	1	0
RYR2	6262	broad.mit.edu	37	1	237802473	237802473	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:237802473T>A	uc001hyl.1	+	46	7207	c.7087T>A	c.(7087-7089)TCA>ACA	p.S2363T		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2363	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AGATGGTCCCTCACCAAATAG	0.443			NA											3	21					0	0	0.009096	0	0
RYR2	6262	broad.mit.edu	37	1	237837423	237837423	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:237837423C>A	uc001hyl.1	+	59	8738	c.8618C>A	c.(8617-8619)CCC>CAC	p.P2873H	RYR2_uc010pxz.1_5'Flank	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2873	Modulator (Potential).|Cytoplasmic (By similarity).|4 X approximate repeats.|4.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CTGCTGGTGCCCTATGATACA	0.413			NA											18	74					2.94398e-08	4.18809e-08	0.007413	1	0
RYR2	6262	broad.mit.edu	37	1	237870417	237870417	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:237870417G>T	uc001hyl.1	+	68	9869	c.9749G>T	c.(9748-9750)TGG>TTG	p.W3250L	RYR2_uc010pxz.1_Missense_Mutation_p.W205L	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3250					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TCTCGTTGGTGGGAGCATGGA	0.498			NA											12	42					5.16669e-11	8.05813e-11	0.010729	1	0
ZP4	57829	broad.mit.edu	37	1	238049089	238049089	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:238049089C>A	uc001hym.2	-	7	937	c.937G>T	c.(937-939)GGA>TGA	p.G313*	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	313	ZP.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			GTGAGGGGTCCAGGCTGGGTC	0.527	NSCLC(166;160 2029 11600 18754 19936)		NA											11	38					5.50884e-06	6.94735e-06	0.001368	1	0
FMN2	56776	broad.mit.edu	37	1	240341258	240341258	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:240341258C>A	uc010pyd.1	+	3	2045	c.1820C>A	c.(1819-1821)CCC>CAC	p.P607H	FMN2_uc010pye.1_Missense_Mutation_p.P607H	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	607					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GTTAGTCAACCCACACACTCA	0.413			NA											8	50					1.76689e-08	2.52626e-08	0.006214	1	0
RGS7	6000	broad.mit.edu	37	1	240969580	240969580	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:240969580C>G	uc001hyv.2	-	15	1459	c.1129G>C	c.(1129-1131)GTA>CTA	p.V377L	RGS7_uc010pyh.1_Missense_Mutation_p.V351L|RGS7_uc010pyj.1_Missense_Mutation_p.V293L|RGS7_uc001hyu.2_Missense_Mutation_p.V377L|RGS7_uc009xgn.1_Missense_Mutation_p.V324L|RGS7_uc001hyw.2_Missense_Mutation_p.V377L|RGS7_uc001hyt.2_Missense_Mutation_p.V209L	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	377	RGS.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			CTTGAGGGTACTTCTTTAATA	0.453			NA											35	50					0	0	0.002836	0	0
EXO1	9156	broad.mit.edu	37	1	242035553	242035553	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:242035553C>T	uc001hzh.2	+	12	2027	c.1487C>T	c.(1486-1488)GCA>GTA	p.A496V	EXO1_uc001hzi.2_Missense_Mutation_p.A496V|EXO1_uc001hzj.2_Missense_Mutation_p.A496V|EXO1_uc009xgq.2_Missense_Mutation_p.A495V	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	496					meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			GAAAGTGGTGCAGTTGTGGTT	0.363			NA						Direct_reversal_of_damage|Editing_and_processing_nucleases					11	47					0	0	0.010729	0	0
KIF26B	55083	broad.mit.edu	37	1	245582880	245582880	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:245582880G>T	uc001ibf.1	+	4	1440	c.1000_splice	c.e4-1	p.I334_splice	KIF26B_uc010pyq.1_Splice_Site_p.I334_splice	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B						microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			TTCTTTGTCAGATCTCCCAGC	0.537			NA											11	24					0.000673444	0.00075369	0.008291	1	0
AHCTF1	25909	broad.mit.edu	37	1	247024416	247024416	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247024416C>A	uc001ibu.1	-	28	3924	c.3917G>T	c.(3916-3918)GGA>GTA	p.G1306V	AHCTF1_uc001ibv.1_Missense_Mutation_p.G1315V|AHCTF1_uc009xgs.1_Missense_Mutation_p.G167V|AHCTF1_uc001ibw.1_RNA	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	1306	Necessary for nuclear localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			ACTGCTGTTTCCTTTGCTCAC	0.448	Colon(145;197 1800 4745 15099 26333)		NA											8	27					0.000157383	0.000182879	0.00308	1	0
AHCTF1	25909	broad.mit.edu	37	1	247063718	247063718	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247063718C>A	uc001ibu.1	-	8	1178	c.1171G>T	c.(1171-1173)GGA>TGA	p.G391*	AHCTF1_uc001ibv.1_Nonsense_Mutation_p.G400*|AHCTF1_uc009xgs.1_5'Flank	NM_015446	NP_056261	Q8WYP5	ELYS_HUMAN	transcription factor ELYS	391	Necessary for cytoplasmic localization (By similarity).				cytokinesis|mitotic prometaphase|mRNA transport|nuclear pore complex assembly|protein transport|transmembrane transport	condensed chromosome kinetochore|cytosol|nuclear matrix|nuclear membrane|nuclear pore|nucleoplasm	DNA binding			ovary(5)|skin(2)	7	all_cancers(71;3.05e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00271)			TTTCCCTGTCCATATATATTC	0.348	Colon(145;197 1800 4745 15099 26333)		NA											8	39					5.4927e-09	8.0151e-09	0.004482	1	0
ZNF670	93474	broad.mit.edu	37	1	247202732	247202732	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247202732G>T	uc001icd.1	-	2	282	c.111C>A	c.(109-111)TTC>TTA	p.F37L	ZNF695_uc001ica.2_Intron|ZNF695_uc001icb.1_Intron	NM_033213	NP_149990	Q9BS34	ZN670_HUMAN	zinc finger protein 670	37	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_cancers(71;4.01e-05)|all_epithelial(71;6.72e-06)|Ovarian(71;0.0173)|Breast(184;0.0318)|all_lung(81;0.0458)|Lung NSC(105;0.0518)	all_cancers(173;0.0266)	OV - Ovarian serous cystadenocarcinoma(106;0.00427)			CCAGGTTCCTGAAGATTTCTT	0.353			NA											9	47					2.17888e-05	2.68607e-05	0.006214	1	0
ZNF669	79862	broad.mit.edu	37	1	247263971	247263971	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247263971C>A	uc001ice.2	-	4	1273	c.1100G>T	c.(1099-1101)TGT>TTT	p.C367F	ZNF669_uc001icf.2_Missense_Mutation_p.C281F	NM_024804	NP_079080	Q96BR6	ZN669_HUMAN	zinc finger protein 669 isoform 1	367	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(71;4.09e-05)|all_epithelial(71;6.72e-06)|Breast(184;0.0226)|Ovarian(71;0.0283)|all_lung(81;0.0488)|Lung NSC(105;0.053)		OV - Ovarian serous cystadenocarcinoma(106;0.00427)			GGCTTTGCCACATTGTTTACA	0.408			NA											21	71					1.28384e-07	1.7601e-07	0.012319	1	0
OR2W5	441932	broad.mit.edu	37	1	247654475	247654475	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247654475G>T	uc001icz.1	+	1	46	c.46G>T	c.(46-48)GGC>TGC	p.G16C		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	16					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			CATCCTGGTGGGCTCTTCTGA	0.478			NA											13	52					2.61681e-11	4.11906e-11	0.00245	1	0
OR2C3	81472	broad.mit.edu	37	1	247695553	247695553	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247695553C>T	uc009xgy.2	-	2	623	c.261G>A	c.(259-261)TGG>TGA	p.W87*	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TCTGTGGTCCCCAGAGGTTAG	0.547			NA											16	53					0	0	0.003163	0	0
OR2G3	81469	broad.mit.edu	37	1	247769675	247769675	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:247769675G>C	uc010pyz.1	+	1	788	c.788G>C	c.(787-789)AGT>ACT	p.S263T		NM_001001914	NP_001001914	Q8NGZ4	OR2G3_HUMAN	olfactory receptor, family 2, subfamily G,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			CTGCAACCTAGTGACAGCTAT	0.463			NA											9	47					0	0	0.004482	0	0
OR2W3	343171	broad.mit.edu	37	1	248059293	248059293	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248059293C>A	uc001idp.1	+	3	674	c.405C>A	c.(403-405)ATC>ATA	p.I135I	OR2W3_uc010pzb.1_Silent_p.I135I	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			ACATGGTGATCATGAACCCCA	0.617			NA											14	38					1.05317e-09	1.57466e-09	0.00245	1	0
OR2L8	391190	broad.mit.edu	37	1	248112346	248112346	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248112346A>G	uc001idt.1	+	1	187	c.187A>G	c.(187-189)AGT>GGT	p.S63G	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TTTCCTACTGAGTCAGCTCTC	0.428			NA											26	262					0	0	0.005443	0	0
OR2L8	391190	broad.mit.edu	37	1	248112525	248112525	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248112525C>T	uc001idt.1	+	1	366	c.366C>T	c.(364-366)TAC>TAT	p.Y122Y	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ATGATCGTTACATTGCTATTT	0.448			NA											32	152					0	0	0.008361	0	0
OR2L3	391192	broad.mit.edu	37	1	248224240	248224240	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248224240C>A	uc001idx.1	+	1	257	c.257C>A	c.(256-258)TCT>TAT	p.S86Y	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			GATTTTCTGTCTGGTAACAAG	0.443			NA											19	192					1.836e-18	3.32396e-18	0.003755	1	0
OR2L13	284521	broad.mit.edu	37	1	248263312	248263312	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248263312G>T	uc001ids.2	+	3	972	c.635G>T	c.(634-636)GGC>GTC	p.G212V		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CCTTTCATTGGCATCACTTCT	0.428			NA											11	60					3.07112e-06	3.94924e-06	0.010729	1	0
OR2M3	127062	broad.mit.edu	37	1	248367101	248367101	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248367101C>A	uc010pzg.1	+	1	732	c.732C>A	c.(730-732)CAC>CAA	p.H244Q		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	244	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			GTTCCTCTCACCTCTTGGTGG	0.478			NA											36	170					2.47316e-13	4.11789e-13	0.003271	1	0
OR2T33	391195	broad.mit.edu	37	1	248436766	248436766	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248436766G>T	uc010pzi.1	-	1	351	c.351C>A	c.(349-351)GCC>GCA	p.A117A		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGCGGTCATAGGCCATGGCTG	0.597			NA											9	75					0.000978159	0.00109184	0.010729	1	0
OR2T33	391195	broad.mit.edu	37	1	248436792	248436792	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248436792C>A	uc010pzi.1	-	1	325	c.325G>T	c.(325-327)GAG>TAG	p.E109*		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			AGGAAGCACTCTCCACCACCC	0.587			NA											9	86					6.90743e-12	1.10259e-11	0.003755	1	0
OR14C36	127066	broad.mit.edu	37	1	248512964	248512964	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248512964G>T	uc010pzl.1	+	1	888	c.888G>T	c.(886-888)AAG>AAT	p.K296N		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	296	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGCAAATAAAGGTGGCCATCA	0.378			NA											12	95					1.61879e-10	2.4927e-10	0.001368	1	0
OR2T6	254879	broad.mit.edu	37	1	248551251	248551251	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248551251G>C	uc001iei.1	+	1	342	c.342G>C	c.(340-342)CTG>CTC	p.L114L		NM_001005471	NP_001005471	Q8NHC8	OR2T6_HUMAN	olfactory receptor, family 2, subfamily T,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AATTCTTCCTGCTGGGGCTCA	0.567			NA											6	81					0	0	0.001984	0	0
OR2T10	127069	broad.mit.edu	37	1	248756958	248756959	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248756958_248756959CC>AA	uc010pzn.1	-	1	111_112	c.111_112GG>TT	c.(109-114)ATGGCT>ATTTCT	p.37_38MA>IS		NM_001004693	NP_001004693	Q8NGZ9	O2T10_HUMAN	olfactory receptor, family 2, subfamily T,	37_38	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CAAGACACAGCCATCAAAAATA	0.446			NA											13	42					0	0	0.004672	0	0
GTPBP4	23560	broad.mit.edu	37	10	1060227	1060227	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:1060227G>T	uc001ift.2	+	15	1654	c.1583G>T	c.(1582-1584)GGT>GTT	p.G528V	GTPBP4_uc001ifu.2_RNA|GTPBP4_uc010qad.1_Missense_Mutation_p.G412V|GTPBP4_uc010qae.1_Missense_Mutation_p.G481V	NM_012341	NP_036473	Q9BZE4	NOG1_HUMAN	G protein-binding protein CRFG	528					negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of cell-cell adhesion|negative regulation of collagen binding|negative regulation of DNA replication|negative regulation of protein ubiquitination|protein stabilization|regulation of cyclin-dependent protein kinase activity|ribosome biogenesis	nucleolus|perinuclear region of cytoplasm	GTP binding|GTPase activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(10;0.107)|Colorectal(49;0.14)	OV - Ovarian serous cystadenocarcinoma(33;0.0814)	Epithelial(11;0.0513)|all cancers(11;0.135)|OV - Ovarian serous cystadenocarcinoma(14;0.173)		CGTAGTCTTGGTGTTGACATG	0.348			NA											9	45					1.58986e-06	2.08065e-06	0.008291	1	0
KIN	22944	broad.mit.edu	37	10	7829784	7829784	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:7829784T>A	uc001ijt.2	-	1	161	c.113A>T	c.(112-114)GAG>GTG	p.E38V	KIN_uc010qaz.1_RNA|KIN_uc009xip.2_Missense_Mutation_p.E38V|KIN_uc010qba.1_5'UTR|ATP5C1_uc010qbb.1_5'Flank|ATP5C1_uc009xiq.1_5'Flank|ATP5C1_uc010qbc.1_5'Flank|ATP5C1_uc001iju.2_5'Flank|ATP5C1_uc001ijv.2_5'Flank	NM_012311	NP_036443	O60870	KIN17_HUMAN	HsKin17 protein	38	C2H2-type.				DNA recombination|DNA repair|DNA replication|interspecies interaction between organisms|mRNA processing	cytoplasm|nuclear matrix	double-stranded DNA binding|RNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CCCACTCACCTCGTCCCGGCA	0.647			NA											23	62					0	0	0.00333	0	0
FAM171A1	221061	broad.mit.edu	37	10	15255361	15255361	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:15255361A>T	uc001iob.2	-	8	2233	c.2226T>A	c.(2224-2226)TCT>TCA	p.S742S		NM_001010924	NP_001010924	Q5VUB5	F1711_HUMAN	hypothetical protein LOC221061 precursor	742	Cytoplasmic (Potential).					integral to membrane				ovary(2)|breast(1)|skin(1)	4						TATCTACGCCAGAGTCCAAAC	0.507			NA											11	50					0	0	0.008291	0	0
ITGA8	8516	broad.mit.edu	37	10	15617595	15617595	+	Splice_Site	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:15617595T>A	uc001ioc.1	-	24	2373	c.2373_splice	c.e24-1	p.G791_splice	ITGA8_uc010qcb.1_Splice_Site_p.G776_splice	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor						cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						TGTGACACTCTGAAACATGAA	0.438			NA											10	25					0	0	0.006214	0	0
ITGA8	8516	broad.mit.edu	37	10	15647745	15647745	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:15647745C>A	uc001ioc.1	-	19	1948	c.1948G>T	c.(1948-1950)GAC>TAC	p.D650Y	ITGA8_uc010qcb.1_Missense_Mutation_p.D635Y	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	650	Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						AGCTTCAAGTCAGGAACACAC	0.393			NA											8	28					5.18039e-06	6.58689e-06	0.00308	1	0
ITGA8	8516	broad.mit.edu	37	10	15726004	15726004	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:15726004G>C	uc001ioc.1	-	4	567	c.567C>G	c.(565-567)AAC>AAG	p.N189K	ITGA8_uc010qcb.1_Missense_Mutation_p.N189K	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	189	FG-GAP 3.|Extracellular (Potential).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						GTTGCTTACTGTTCCGGCAAG	0.453			NA											9	42					0	0	0.010729	0	0
FAM188A	80013	broad.mit.edu	37	10	15902296	15902296	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:15902296C>A	uc001iod.1	-	1	224	c.3G>T	c.(1-3)ATG>ATT	p.M1I	FAM188A_uc001ioe.1_5'UTR|FAM188A_uc001iof.1_Missense_Mutation_p.M1I	NM_024948	NP_079224	Q9H8M7	F188A_HUMAN	chromosome 10 open reading frame 97	1					apoptosis	nucleus	calcium ion binding			ovary(1)	1						TCAGTTCGGACATGATGAGGA	0.637	Pancreas(159;946 1953 2111 4475 22008)		NA											3	10					0.004672	0.00503002	0.004672	1	0
SLC39A12	221074	broad.mit.edu	37	10	18280167	18280168	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:18280167_18280168GG>TT	uc001ipo.2	+	8	1630_1631	c.1357_1358GG>TT	c.(1357-1359)GGA>TTA	p.G453L	SLC39A12_uc001ipn.2_Missense_Mutation_p.G453L|SLC39A12_uc001ipp.2_Missense_Mutation_p.G453L|SLC39A12_uc010qck.1_Missense_Mutation_p.G319L	NM_001145195	NP_001138667	Q504Y0	S39AC_HUMAN	solute carrier family 39 (zinc transporter),	453	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			ovary(1)|breast(1)	2						GGGATTAATTGGAGGCATCCAT	0.342			NA											14	45					0	0	0.004672	0	0
GPR158	57512	broad.mit.edu	37	10	25885700	25885700	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:25885700G>T	uc001isj.2	+	10	2187	c.2127G>T	c.(2125-2127)TTG>TTT	p.L709F	GPR158_uc001isk.2_Missense_Mutation_p.L84F	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	709	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AGCACAGCTTGGATCCAGAGG	0.473			NA											13	45					4.36969e-10	6.60896e-10	0.001855	1	0
ANKRD26	22852	broad.mit.edu	37	10	27294557	27294557	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:27294557C>A	uc001ith.2	-	34	5264	c.5092G>T	c.(5092-5094)GAA>TAA	p.E1698*	ANKRD26_uc001itg.2_Nonsense_Mutation_p.E1385*|ANKRD26_uc009xku.1_Nonsense_Mutation_p.E1699*	NM_014915	NP_055730	Q9UPS8	ANR26_HUMAN	ankyrin repeat domain 26	1698						centrosome				large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|skin(1)	4						TGTACATATTCTCTTGATGCT	0.318			NA											10	54					2.17888e-05	2.68607e-05	0.006214	1	0
PTCHD3	374308	broad.mit.edu	37	10	27687737	27687737	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:27687737G>T	uc001itu.2	-	4	1908	c.1790C>A	c.(1789-1791)ACA>AAA	p.T597K		NM_001034842	NP_001030014	Q3KNS1	PTHD3_HUMAN	patched domain containing 3	597					spermatid development	integral to membrane	hedgehog receptor activity			ovary(2)|pancreas(1)|skin(1)	4						CTCACTCCTTGTGAGAAAGGG	0.378			NA											8	22					1.26484e-09	1.88617e-09	0.00308	1	0
ITGB1	3688	broad.mit.edu	37	10	33200418	33200418	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:33200418C>T	uc001iws.3	-	13	2025	c.1889G>A	c.(1888-1890)TGT>TAT	p.C630Y	ITGB1_uc001iwp.3_Missense_Mutation_p.C630Y|ITGB1_uc001iwq.3_Missense_Mutation_p.C630Y|ITGB1_uc001iwr.3_Missense_Mutation_p.C630Y|ITGB1_uc001iwt.3_Missense_Mutation_p.C630Y|ITGB1_uc001iwu.1_Missense_Mutation_p.C630Y	NM_133376	NP_596867	P05556	ITB1_HUMAN	integrin beta 1 isoform 1A precursor	630	Extracellular (Potential).|Cysteine-rich tandem repeats.|IV.				axon guidance|blood coagulation|cell-cell adhesion mediated by integrin|cell-matrix adhesion|cellular defense response|homophilic cell adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|leukocyte migration|positive regulation of apoptosis|regulation of immune response	cell surface|cleavage furrow|focal adhesion|melanosome|neuromuscular junction|ruffle|sarcolemma	identical protein binding|protein heterodimerization activity|receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2		Ovarian(717;1.34e-05)|Breast(68;0.0634)				ACACATCTCACACGTTTGCCC	0.478			NA											9	46					0	0	0.004482	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38651256	38651256	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:38651256C>A	uc010qex.1	+	3	403	c.328C>A	c.(328-330)CTC>ATC	p.L110I	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.L108I					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCTCTTTGGCCTCTTTTCAAG	0.378			NA											15	28					1.52009e-12	2.49195e-12	0.003163	1	0
BMS1	9790	broad.mit.edu	37	10	43316061	43316061	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:43316061A>T	uc001jaj.2	+	17	3233	c.2875A>T	c.(2875-2877)ATC>TTC	p.I959F		NM_014753	NP_055568	Q14692	BMS1_HUMAN	BMS1-like, ribosome assembly protein	959					ribosome assembly	nucleolus	ATP binding|GTP binding|GTPase activity			ovary(2)|upper_aerodigestive_tract(1)	3						ACTGTATTATATCGAAGACCA	0.423			NA											12	40					0	0	0.001368	0	0
RET	5979	broad.mit.edu	37	10	43606842	43606842	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:43606842T>C	uc001jal.2	+	7	1641	c.1451T>C	c.(1450-1452)ATG>ACG	p.M484T	RET_uc001jak.1_Missense_Mutation_p.M484T|RET_uc010qez.1_Missense_Mutation_p.M230T	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	484	Extracellular (Potential).				homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	CTTCACTACATGGTGGTGGCC	0.632	Melanoma(102;360 522 3376 9752 9881 14372 17251 18341 20876 24662 34807 43144 48149)		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				11	27					0	0	0.008291	0	0
ALOX5	240	broad.mit.edu	37	10	45941035	45941035	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:45941035T>G	uc001jce.2	+	14	2024	c.1925T>G	c.(1924-1926)CTC>CGC	p.L642R	ALOX5_uc009xmt.2_Missense_Mutation_p.L610R|ALOX5_uc010qfg.1_Missense_Mutation_p.L585R	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	642	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CGCAAGAACCTCGAGGCCATT	0.537			NA											15	40					0	0	0.00245	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999948	46999948	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:46999948G>T	uc001jec.2	+	3	1203	c.1068G>T	c.(1066-1068)GCG>GCT	p.A356A	GPRIN2_uc010qfq.1_Silent_p.A119A	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	356											0						CCCTGGAAGCGCCTGCAGCCC	0.677			NA											12	91					3.07112e-06	3.94924e-06	0.010729	1	0
PPYR1	5540	broad.mit.edu	37	10	47087349	47087349	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:47087349C>A	uc001jee.2	+	3	985	c.566C>A	c.(565-567)TCC>TAC	p.S189Y	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Missense_Mutation_p.S189Y	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	189	Extracellular (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						AAGAACCACTCCAAGGCTCTG	0.582			NA											15	118					1.05317e-09	1.57466e-09	0.00245	1	0
GDF2	2658	broad.mit.edu	37	10	48414232	48414232	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:48414232C>T	uc001jfa.1	-	2	799	c.636G>A	c.(634-636)AAG>AAA	p.K212K		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	212					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GGACCCAGCGCTTCACGGCGC	0.587			NA											12	59					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	10	49218444	49218444	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:49218444G>A	uc001jgd.2	-	8	1854	c.1695C>T	c.(1693-1695)ATC>ATT	p.I565I	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;												NA						CCAGCAGCAGGATGGCTGTCT	0.642			NA											23	106					0	0	0.009535	0	0
CHAT	1103	broad.mit.edu	37	10	50863149	50863149	+	Missense_Mutation	SNP	G	G	T	rs141881680		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:50863149G>T	uc001jhz.2	+	12	1796	c.1643G>T	c.(1642-1644)CGA>CTA	p.R548L	CHAT_uc001jhv.1_Missense_Mutation_p.R430L|CHAT_uc001jhx.1_Missense_Mutation_p.R430L|CHAT_uc001jhy.1_Missense_Mutation_p.R430L|CHAT_uc001jia.2_Missense_Mutation_p.R430L|CHAT_uc010qgs.1_Missense_Mutation_p.R430L	NM_020549	NP_065574	P28329	CLAT_HUMAN	choline acetyltransferase isoform 2	548					neurotransmitter biosynthetic process|neurotransmitter secretion	cytosol|nucleus	choline O-acetyltransferase activity			central_nervous_system(3)	3		all_neural(218;0.107)		GBM - Glioblastoma multiforme(2;0.000585)	Choline(DB00122)	AGGCTCCATCGAAGACTGGTG	0.507			NA											8	50					1.76689e-08	2.52626e-08	0.006214	1	0
MBL2	4153	broad.mit.edu	37	10	54531239	54531239	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:54531239C>A	uc001jjt.2	-	1	222	c.157G>T	c.(157-159)GAT>TAT	p.D53Y		NM_000242	NP_000233	P11226	MBL2_HUMAN	soluble mannose-binding lectin precursor	53	Collagen-like.				acute-phase response|complement activation, classical pathway|complement activation, lectin pathway|defense response to Gram-positive bacterium|negative regulation of growth of symbiont in host|opsonization|response to oxidative stress	collagen|extracellular space	bacterial cell surface binding|calcium-dependent protein binding|eukaryotic cell surface binding|mannose binding|receptor binding			ovary(1)	1						TTGGTGCCATCACGCCCATCT	0.542			NA											10	38					4.68919e-08	6.60997e-08	0.008291	1	0
PCDH15	65217	broad.mit.edu	37	10	55569178	55569178	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:55569178T>A	uc010qhs.1	-	37	5042	c.4647A>T	c.(4645-4647)AGA>AGT	p.R1549S	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qht.1_Missense_Mutation_p.R1542S|PCDH15_uc010qhu.1_3'UTR	NM_001142769	NP_001136241	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD2-1 precursor	Error:Variant_position_missing_in_Q96QU1_after_alignment					equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TGGGGAATATTCTGGCTCTCT	0.433			NA								HNSCC(58;0.16)			26	88					0	0	0.00333	0	0
PCDH15	65217	broad.mit.edu	37	10	55780091	55780091	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:55780091G>T	uc001jju.1	-	20	3007	c.2612C>A	c.(2611-2613)ACA>AAA	p.T871K	PCDH15_uc010qhq.1_Missense_Mutation_p.T876K|PCDH15_uc010qhr.1_Missense_Mutation_p.T871K|PCDH15_uc010qhs.1_Missense_Mutation_p.T883K|PCDH15_uc010qht.1_Missense_Mutation_p.T878K|PCDH15_uc010qhu.1_Missense_Mutation_p.T871K|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.T871K|PCDH15_uc010qhw.1_Missense_Mutation_p.T834K|PCDH15_uc010qhx.1_Missense_Mutation_p.T800K|PCDH15_uc010qhy.1_Missense_Mutation_p.T876K|PCDH15_uc010qhz.1_Missense_Mutation_p.T871K|PCDH15_uc010qia.1_Missense_Mutation_p.T849K|PCDH15_uc010qib.1_Missense_Mutation_p.T849K|PCDH15_uc001jjw.2_Missense_Mutation_p.T871K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	871	Extracellular (Potential).|Cadherin 8.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TAGTTCTCCTGTAAATGGATG	0.403			NA								HNSCC(58;0.16)			29	81					1.08312e-15	1.8924e-15	0.009535	1	0
PCDH15	65217	broad.mit.edu	37	10	55780158	55780158	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:55780158C>T	uc001jju.1	-	20	2940	c.2545G>A	c.(2545-2547)GGA>AGA	p.G849R	PCDH15_uc010qhq.1_Missense_Mutation_p.G854R|PCDH15_uc010qhr.1_Missense_Mutation_p.G849R|PCDH15_uc010qhs.1_Missense_Mutation_p.G861R|PCDH15_uc010qht.1_Missense_Mutation_p.G856R|PCDH15_uc010qhu.1_Missense_Mutation_p.G849R|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.G849R|PCDH15_uc010qhw.1_Missense_Mutation_p.G812R|PCDH15_uc010qhx.1_Missense_Mutation_p.G778R|PCDH15_uc010qhy.1_Missense_Mutation_p.G854R|PCDH15_uc010qhz.1_Missense_Mutation_p.G849R|PCDH15_uc010qia.1_Missense_Mutation_p.G827R|PCDH15_uc010qib.1_Missense_Mutation_p.G827R|PCDH15_uc001jjw.2_Missense_Mutation_p.G849R	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	849	Extracellular (Potential).|Cadherin 8.				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				ACATTTGCTCCAAGGTCGACA	0.388			NA								HNSCC(58;0.16)			17	81					0	0	0.006122	0	0
UBE2D1	7321	broad.mit.edu	37	10	60124613	60124613	+	Nonsense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:60124613C>G	uc001jke.1	+	5	504	c.281C>G	c.(280-282)TCA>TGA	p.S94*		NM_003338	NP_003329	P51668	UB2D1_HUMAN	ubiquitin-conjugating enzyme E2D 1	94					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|BMP signaling pathway|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K48-linked ubiquitination|transforming growth factor beta receptor signaling pathway	cytosol|nucleoplasm	ATP binding|protein binding|ubiquitin-protein ligase activity			skin(2)	2						TCACAATGGTCACCAGCTCTG	0.338			NA											8	34					0	0	0.006214	0	0
BICC1	80114	broad.mit.edu	37	10	60549116	60549116	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:60549116C>T	uc001jki.1	+	7	695	c.695C>T	c.(694-696)TCA>TTA	p.S232L		NM_001080512	NP_001073981	Q9H694	BICC1_HUMAN	bicaudal C homolog 1	232					multicellular organismal development		RNA binding			ovary(2)|lung(1)|skin(1)	4						CAGCATATATCACAAACGTAC	0.418			NA											10	51					0	0	0.006214	0	0
ANK3	288	broad.mit.edu	37	10	61834532	61834532	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:61834532T>A	uc001jky.2	-	37	6299	c.6107A>T	c.(6106-6108)TAC>TTC	p.Y2036F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2036					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						ATTTGTTAGGTAATCAATAAC	0.403			NA											15	60					0	0	0.004007	0	0
ANK3	288	broad.mit.edu	37	10	61846462	61846462	+	Missense_Mutation	SNP	T	T	C	rs142538212		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:61846462T>C	uc001jky.2	-	30	3913	c.3721A>G	c.(3721-3723)AAT>GAT	p.N1241D	ANK3_uc001jkw.2_Missense_Mutation_p.N375D|ANK3_uc009xpa.2_Missense_Mutation_p.N375D|ANK3_uc001jkx.2_Missense_Mutation_p.N419D|ANK3_uc010qih.1_Missense_Mutation_p.N1242D|ANK3_uc001jkz.3_Missense_Mutation_p.N1235D|ANK3_uc001jla.1_Missense_Mutation_p.N307D|ANK3_uc001jlb.1_Missense_Mutation_p.N759D	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1241					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						AGACGCAGATTGGGTGTAGTG	0.428			NA											19	34					0	0	0.008871	0	0
ZNF365	22891	broad.mit.edu	37	10	64148220	64148220	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:64148220G>A	uc001jmc.2	+	3	1124	c.809G>A	c.(808-810)CGG>CAG	p.R270Q	ZNF365_uc001jly.3_Missense_Mutation_p.R285Q|ZNF365_uc001jmb.3_Missense_Mutation_p.R270Q|ZNF365_uc001jlz.3_Missense_Mutation_p.R270Q|ZNF365_uc001jma.3_RNA	NM_199451	NP_955523	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform C	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					GGGAAAGCCCGGCTCCAGGAC	0.498			NA											8	47					0	0	0.00308	0	0
MYPN	84665	broad.mit.edu	37	10	69909816	69909816	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:69909816A>G	uc001jnm.3	+	7	1450	c.1265A>G	c.(1264-1266)TAC>TGC	p.Y422C	MYPN_uc001jnl.1_Missense_Mutation_p.Y422C|MYPN_uc001jnn.3_Missense_Mutation_p.Y147C|MYPN_uc001jno.3_Missense_Mutation_p.Y422C|MYPN_uc001jnp.1_Missense_Mutation_p.Y422C|MYPN_uc009xps.2_Missense_Mutation_p.Y422C|MYPN_uc009xpt.2_Missense_Mutation_p.Y422C|MYPN_uc010qit.1_Missense_Mutation_p.Y128C|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	422	Interaction with CARP.					nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						CCCACCAATTACTTGCAGGGA	0.358			NA											6	45					0	0	0.001984	0	0
MYPN	84665	broad.mit.edu	37	10	69948766	69948766	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:69948766G>A	uc001jnm.3	+	14	2993	c.2808G>A	c.(2806-2808)GAG>GAA	p.E936E	MYPN_uc001jnn.3_Silent_p.E661E|MYPN_uc001jno.3_Silent_p.E936E|MYPN_uc009xpt.2_Silent_p.E936E|MYPN_uc010qit.1_Silent_p.E642E|MYPN_uc010qiu.1_RNA	NM_032578	NP_115967	Q86TC9	MYPN_HUMAN	myopalladin	936						nucleus|sarcomere	actin binding			ovary(3)|skin(2)	5						AACATGATGAGATCCCCACGG	0.433			NA											15	36					0	0	0.00245	0	0
TET1	80312	broad.mit.edu	37	10	70446225	70446225	+	Missense_Mutation	SNP	A	A	G	rs141820172		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:70446225A>G	uc001jok.3	+	11	5670	c.5165A>G	c.(5164-5166)AAG>AGG	p.K1722R		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1722					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						TTTGGCTCCAAGGAAGGAATG	0.498			NA											28	93					0	0	0.004656	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72489072	72489072	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:72489072A>T	uc001jrh.2	+	5	893	c.893A>T	c.(892-894)GAG>GTG	p.E298V	ADAMTS14_uc001jrg.2_Missense_Mutation_p.E298V|ADAMTS14_uc010qjl.1_RNA	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	298	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						TACCACGATGAGTCCCTGGGG	0.373			NA											9	62					0	0	0.008291	0	0
C10orf54	64115	broad.mit.edu	37	10	73511558	73511558	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:73511558G>A	uc001jsd.2	-	6	906	c.765C>T	c.(763-765)CCC>CCT	p.P255P	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Silent_p.P123P|C10orf54_uc009xqm.2_Silent_p.P93P	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	255	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CTTTGGCCTCGGGTATCCCCT	0.607			NA											14	37					0	0	0.001855	0	0
PLA2G12B	84647	broad.mit.edu	37	10	74714288	74714288	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:74714288A>G	uc001jtf.1	-	1	223	c.156T>C	c.(154-156)TCT>TCC	p.S52S	PLA2G12B_uc009xqt.1_5'UTR|PLA2G12B_uc010qjz.1_Silent_p.S52S	NM_032562	NP_115951	Q9BX93	PG12B_HUMAN	phospholipase A2, group XIIB precursor	52					lipid catabolic process	extracellular region	calcium ion binding|phospholipase A2 activity			ovary(1)	1	Prostate(51;0.0198)					GCTCCAGAAAAGAATCGAAGT	0.532			NA											34	196					0	0	0.003271	0	0
TTC18	118491	broad.mit.edu	37	10	75072269	75072269	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:75072269C>A	uc009xrc.2	-	11	1376	c.1255G>T	c.(1255-1257)GAA>TAA	p.E419*	TTC18_uc001jty.2_Nonsense_Mutation_p.E419*|TTC18_uc009xrd.1_Nonsense_Mutation_p.E227*	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	419							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					ATATCCTTTTCTTTCACTGGT	0.388			NA											9	110					1.76689e-08	2.52626e-08	0.006214	1	0
SH2D4B	387694	broad.mit.edu	37	10	82403816	82403816	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:82403816C>A	uc001kck.1	+	7	1483	c.1053C>A	c.(1051-1053)ACC>ACA	p.T351T	SH2D4B_uc001kcl.1_Silent_p.T303T|SH2D4B_uc001kcm.1_Missense_Mutation_p.P172Q|SH2D4B_uc001kcn.1_RNA	NM_207372	NP_997255	Q5SQS7	SH24B_HUMAN	SH2 domain containing 4B isoform 1	Error:Variant_position_missing_in_Q5SQS7_after_alignment											0			Colorectal(32;0.229)			GACAGCCCACCAGACTACCAT	0.373			NA											7	23					3.09899e-07	4.18449e-07	0.004482	1	0
NRG3	10718	broad.mit.edu	37	10	84733613	84733613	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:84733613C>A	uc001kco.2	+	7	1381	c.1354C>A	c.(1354-1356)CAG>AAG	p.Q452K	NRG3_uc010qlz.1_Missense_Mutation_p.Q451K|NRG3_uc001kcp.2_Missense_Mutation_p.Q231K|NRG3_uc001kcq.2_Missense_Mutation_p.Q102K|NRG3_uc001kcr.2_Missense_Mutation_p.Q102K	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	452	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TGTCGGCCCCCAGTCATTCCC	0.502			NA											18	37					2.35188e-11	3.71235e-11	0.006122	1	0
NRG3	10718	broad.mit.edu	37	10	84744865	84744865	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:84744865G>A	uc001kco.2	+	9	1622	c.1595G>A	c.(1594-1596)AGT>AAT	p.S532N	NRG3_uc010qlz.1_Missense_Mutation_p.S531N|NRG3_uc001kcp.2_Missense_Mutation_p.S335N|NRG3_uc001kcq.2_Missense_Mutation_p.S182N|NRG3_uc001kcr.2_Missense_Mutation_p.S206N	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	556	Cytoplasmic (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		TATTCATCCAGTGGTTTAAAA	0.318			NA											34	183					0	0	0.010818	0	0
PLCE1	51196	broad.mit.edu	37	10	96039631	96039631	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:96039631G>T	uc001kjk.2	+	20	5392	c.4758G>T	c.(4756-4758)GAG>GAT	p.E1586D	PLCE1_uc010qnx.1_Missense_Mutation_p.E1570D|PLCE1_uc001kjm.2_Missense_Mutation_p.E1278D|uc001kjo.1_RNA	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1586					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAGATGAGGAGGACGAATATG	0.428			NA									OREG0020383	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	32					2.48551e-13	4.12633e-13	0.00499	1	0
DNTT	1791	broad.mit.edu	37	10	98097906	98097906	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:98097906C>A	uc001kmf.2	+	11	1625	c.1455C>A	c.(1453-1455)CTC>CTA	p.L485L	DNTT_uc001kmg.2_Silent_p.L484L	NM_004088	NP_004079	P04053	TDT_HUMAN	terminal deoxynucleotidyltransferase isoform 1	485	Mediates interaction with DNTTIP2.				DNA modification	nucleus	DNA binding|DNA nucleotidylexotransferase activity|DNA-directed DNA polymerase activity|metal ion binding			ovary(1)	1		Colorectal(252;0.0815)|all_hematologic(284;0.224)		Epithelial(162;7.97e-08)|all cancers(201;1.89e-06)		GGATATTCCTCAAAGCAGAAA	0.353			NA											7	23					0.00307968	0.00336253	0.00308	1	0
SLC25A28	81894	broad.mit.edu	37	10	101371021	101371021	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:101371021C>A	uc001kpx.2	-	4	809	c.680G>T	c.(679-681)AGC>ATC	p.S227I	SLC25A28_uc001kpy.2_Missense_Mutation_p.S40I	NM_031212	NP_112489	Q96A46	MFRN2_HUMAN	solute carrier family 25, member 28	227	Solcar 2.|Helical; Name=4; (Potential).				ion transport|iron ion homeostasis	integral to membrane|mitochondrial inner membrane					0		Colorectal(252;0.234)		Epithelial(162;2.57e-10)|all cancers(201;2.01e-08)		GGTGGTGTAGCTGCGGTAAAA	0.532			NA											16	36					2.23348e-06	2.90285e-06	0.004007	1	0
DNMBP	23268	broad.mit.edu	37	10	101716779	101716779	+	Missense_Mutation	SNP	C	C	A	rs138795130		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:101716779C>A	uc001kqj.2	-	4	544	c.452G>T	c.(451-453)CGG>CTG	p.R151L	NCRNA00093_uc001kqk.1_RNA	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	151	SH3 3.				intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		CATTAGGGCCCGGGCTTGTCC	0.557			NA											9	33					0.00448238	0.00487215	0.004482	1	0
CPN1	1369	broad.mit.edu	37	10	101829578	101829578	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:101829578C>A	uc001kql.2	-	3	729	c.469G>T	c.(469-471)GTG>TTG	p.V157L		NM_001308	NP_001299	P15169	CBPN_HUMAN	carboxypeptidase N, polypeptide 1 precursor	157	Catalytic.				proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			central_nervous_system(3)|pancreas(1)	4		Colorectal(252;0.234)		Epithelial(162;4.77e-10)|all cancers(201;3.82e-08)		TTCAGGTCCACTCCATTTGCA	0.443			NA											15	67					4.7546e-09	6.98602e-09	0.004007	1	0
PAX2	5076	broad.mit.edu	37	10	102509555	102509555	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:102509555C>T	uc001krk.3	+	2	646	c.96C>T	c.(94-96)CCC>CCT	p.P32P	PAX2_uc001krl.3_Silent_p.P32P|PAX2_uc001krm.3_Silent_p.P32P|PAX2_uc001kro.3_Silent_p.P32P|PAX2_uc001krn.3_Silent_p.P32P|PAX2_uc010qps.1_Silent_p.P31P|PAX2_uc001krp.1_Silent_p.P36P	NM_003990	NP_003981	Q02962	PAX2_HUMAN	paired box protein 2 isoform e	32	Paired.				anti-apoptosis|axonogenesis|brain morphogenesis|branching involved in ureteric bud morphogenesis|cell fate determination|cellular response to glucose stimulus|cellular response to hydrogen peroxide|cellular response to retinoic acid|cochlea development|glial cell differentiation|inner ear morphogenesis|mesenchymal to epithelial transition involved in metanephros morphogenesis|mesodermal cell fate specification|mesonephros development|metanephric collecting duct development|metanephric distal convoluted tubule development|metanephric mesenchymal cell differentiation|metanephric nephron tubule formation|negative regulation of caspase activity|negative regulation of cytolysis|negative regulation of mesenchymal stem cell apoptosis involved in metanephric nephron morphogenesis|negative regulation of reactive oxygen species metabolic process|negative regulation of transcription, DNA-dependent|nephric duct formation|neural tube closure|optic chiasma development|optic cup morphogenesis involved in camera-type eye development|optic nerve structural organization|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|positive regulation of metanephric DCT cell differentiation|positive regulation of metanephric glomerulus development|positive regulation of optic nerve formation|positive regulation of transcription from RNA polymerase II promoter|pronephric field specification|protein kinase B signaling cascade|reactive oxygen species metabolic process|regulation of metanephric nephron tubule epithelial cell differentiation|regulation of metanephros size|retinal pigment epithelium development|stem cell differentiation|transcription from RNA polymerase II promoter|ureter maturation|vestibulocochlear nerve formation|visual perception	centriolar satellite|nucleus|protein complex|protein-DNA complex	core promoter proximal region sequence-specific DNA binding|superoxide-generating NADPH oxidase activity				0		Colorectal(252;0.234)		Epithelial(162;1.32e-08)|all cancers(201;7.32e-07)		ACGGCCGGCCCCTACCCGACG	0.657			NA											12	33					0	0	0.001368	0	0
COL17A1	1308	broad.mit.edu	37	10	105798268	105798268	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:105798268A>T	uc001kxr.2	-	45	3135	c.2966T>A	c.(2965-2967)ATG>AAG	p.M989K		NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	989	Extracellular (Potential).|Triple-helical region.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		TGACACGTACATGGTACTTGA	0.592			NA											25	68					0	0	0.003954	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111639976	111639976	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:111639976G>T	uc001kyp.1	-	12	1163	c.1023C>A	c.(1021-1023)CTC>CTA	p.L341L	XPNPEP1_uc009xxt.1_Silent_p.L384L|XPNPEP1_uc001kyq.1_Silent_p.L270L|XPNPEP1_uc010qrb.1_Silent_p.L384L|XPNPEP1_uc010qra.1_Silent_p.L108L	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	341					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		AGAGTTCACAGAGAGCAACAG	0.368			NA											10	54					2.68362e-12	4.34905e-12	0.001368	1	0
ATRNL1	26033	broad.mit.edu	37	10	117027883	117027883	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:117027883G>T	uc001lcg.2	+	13	2448	c.2062G>T	c.(2062-2064)GAC>TAC	p.D688Y		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	688	PSI 2.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		ATGGTGTGATGACAAGAAATG	0.408			NA											9	40					0.000274275	0.000314197	0.004482	1	0
GFRA1	2674	broad.mit.edu	37	10	118030335	118030335	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:118030335C>A	uc001lcj.2	-	3	1031	c.333G>T	c.(331-333)CAG>CAT	p.Q111H	GFRA1_uc001lci.2_Missense_Mutation_p.Q111H|GFRA1_uc009xyr.2_Missense_Mutation_p.Q111H	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	111	1.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		CACGCGTACCCTGCAGGCTCT	0.612	Ovarian(128;329 1725 45498 46808 50759)		NA											6	42					0.00198382	0.00217721	0.001984	1	0
C10orf96	374355	broad.mit.edu	37	10	118101646	118101646	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:118101646T>C	uc001lck.2	+	5	632	c.381T>C	c.(379-381)CTT>CTC	p.L127L		NM_198515	NP_940917	P0C7W6	CJ096_HUMAN	hypothetical protein LOC374355	127	Potential.									ovary(2)	2		Lung NSC(174;0.204)|all_lung(145;0.248)		all cancers(201;0.014)		AAAGAGAGCTTTTGATGAAAG	0.289			NA											12	30					0	0	0.010729	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122280557	122280557	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:122280557C>A	uc001lev.1	+	5	747	c.395C>A	c.(394-396)CCC>CAC	p.P132H	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.P132H|PPAPDC1A_uc009xzl.1_Intron|PPAPDC1A_uc001lew.1_Intron|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_Missense_Mutation_p.P11H	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	132					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		ACAGGTGACCCCGATCTGGTG	0.512			NA											14	42					4.7546e-09	6.98602e-09	0.004007	1	0
PPAPDC1A	196051	broad.mit.edu	37	10	122334710	122334710	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:122334710T>A	uc001lev.1	+	6	865	c.513T>A	c.(511-513)AGT>AGA	p.S171R	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.S171R|PPAPDC1A_uc009xzl.1_Missense_Mutation_p.S108R|PPAPDC1A_uc001lew.1_Missense_Mutation_p.V78E|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_Missense_Mutation_p.S50R	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	171					phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		TCACCGAGAGTGGGCGGGGAA	0.582			NA											10	62					0	0	0.008291	0	0
TACC2	10579	broad.mit.edu	37	10	123970198	123970198	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:123970198G>T	uc001lfv.2	+	9	6618	c.6258G>T	c.(6256-6258)TCG>TCT	p.S2086S	TACC2_uc001lfw.2_Silent_p.S232S|TACC2_uc009xzx.2_Silent_p.S2041S|TACC2_uc010qtv.1_Silent_p.S2090S|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Silent_p.S164S|TACC2_uc001lga.2_Silent_p.S164S|TACC2_uc009xzy.2_Silent_p.S164S|TACC2_uc001lgb.2_Silent_p.S121S|TACC2_uc010qtw.1_Silent_p.S181S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2086						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				TGTCCCGGTCGCTCAGCCTGC	0.577			NA											9	38					7.48243e-07	9.9376e-07	0.006214	1	0
IKZF5	64376	broad.mit.edu	37	10	124753508	124753508	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:124753508T>G	uc001lha.2	-	5	1347	c.1048A>C	c.(1048-1050)ACC>CCC	p.T350P	IKZF5_uc001lgz.2_Missense_Mutation_p.T188P	NM_022466	NP_071911	Q9H5V7	IKZF5_HUMAN	zinc finger protein, subfamily 1A, 5	350					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_neural(114;0.169)|Colorectal(57;0.178)|Glioma(114;0.222)		Colorectal(40;0.0701)|COAD - Colon adenocarcinoma(40;0.0754)		GGGGCTGGGGTGCTTGGCTGG	0.547			NA											9	49					0	0	0.00499	0	0
FANK1	92565	broad.mit.edu	37	10	127693614	127693614	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:127693614G>C	uc001ljh.3	+	7	805	c.701G>C	c.(700-702)TGT>TCT	p.C234S	FANK1_uc009yan.2_Missense_Mutation_p.C260S|FANK1_uc001lji.2_Missense_Mutation_p.C228S	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	234	ANK 4.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				AAGGATGGCTGTGAGGTACGG	0.532			NA											12	63					0	0	0.010729	0	0
DOCK1	1793	broad.mit.edu	37	10	129207637	129207637	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:129207637T>G	uc001ljt.2	+	42	4326	c.4262T>G	c.(4261-4263)GTG>GGG	p.V1421G	DOCK1_uc010qun.1_Missense_Mutation_p.V1442G|DOCK1_uc009yaq.2_Missense_Mutation_p.V416G	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1421	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		CACAGGCCAGTGTCAGAGCAG	0.443			NA											14	49					0	0	0.00499	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133930790	133930790	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:133930790G>T	uc001lkx.3	+	2	345	c.345G>T	c.(343-345)CGG>CGT	p.R115R		NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		AGAACCAGCGGCTGCAGGCAC	0.612			NA											11	50					4.68919e-08	6.60997e-08	0.008291	1	0
LOC653544	653544	broad.mit.edu	37	10	135491123	135491123	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr10:135491123G>A	uc010qvi.1	+	1	845	c.734G>A	c.(733-735)GGC>GAC	p.G245D		NM_001127389	NP_001120861	F5GZ66	F5GZ66_HUMAN	double homeobox, 4-like	245						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCCACACCGGCGCGTGGGGA	0.786			NA											4	15					0	0	0.004482	0	0
MUC5B	727897	broad.mit.edu	37	11	1257599	1257599	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:1257599G>T	uc009ycr.1	+	40	5069	c.4943G>T	c.(4942-4944)CGT>CTT	p.R1648L	MUC5B_uc009yct.1_Intron|MUC5B_uc001ltb.2_Intron|MUC5B_uc001lta.2_Intron	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		TTCCGGCAGCGTCTGCCTCCC	0.672			NA											4	16					0.00909568	0.00964006	0.009096	1	0
INS	3630	broad.mit.edu	37	11	2181169	2181169	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:2181169C>A	uc001lvn.1	-	3	301	c.246G>T	c.(244-246)CTG>CTT	p.L82L	INS-IGF2_uc001lvi.2_Intron|INS-IGF2_uc001lvm.2_Intron|INS_uc001lvo.1_Silent_p.L82L|INS_uc009ydg.1_Silent_p.L70L	NM_000207	NP_000198	P01308	INS_HUMAN	proinsulin precursor	82					activation of protein kinase B activity|acute-phase response|alpha-beta T cell activation|endocrine pancreas development|energy reserve metabolic process|fatty acid homeostasis|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|glucose metabolic process|glucose transport|insulin receptor signaling pathway|MAPKKK cascade|negative regulation of acute inflammatory response|negative regulation of apoptosis|negative regulation of fatty acid metabolic process|negative regulation of feeding behavior|negative regulation of gluconeogenesis|negative regulation of glycogen catabolic process|negative regulation of lipid catabolic process|negative regulation of NAD(P)H oxidase activity|negative regulation of protein catabolic process|negative regulation of protein secretion|negative regulation of proteolysis|negative regulation of respiratory burst involved in inflammatory response|negative regulation of vasodilation|positive regulation of cell differentiation|positive regulation of cell growth|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of cytokine secretion|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin receptor signaling pathway|positive regulation of lipid biosynthetic process|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of nitric-oxide synthase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein autophosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of respiratory burst|positive regulation of vasodilation|regulation of cellular amino acid metabolic process|regulation of insulin secretion|regulation of transmembrane transporter activity|wound healing	endoplasmic reticulum lumen|endosome lumen|extracellular space	hormone activity|insulin receptor binding|insulin-like growth factor receptor binding				0		Lung NSC(207;8.94e-06)|all_epithelial(84;3.17e-05)|all_lung(207;3.67e-05)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.0025)|LUSC - Lung squamous cell carcinoma(625;0.082)|Lung(200;0.14)		GGGACCCCTCCAGGGCCAAGG	0.662			NA											3	8					6.4e-05	7.65288e-05	0.004672	1	0
RRM1	6240	broad.mit.edu	37	11	4133143	4133143	+	Silent	SNP	A	A	T	rs12807843		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:4133143A>T	uc001lyw.3	+	7	820	c.501A>T	c.(499-501)CCA>CCT	p.P167P	RRM1_uc009yeh.1_Silent_p.P70P|RRM1_uc009yei.2_Silent_p.P127P|RRM1_uc010qyc.1_Silent_p.P70P	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	167					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	CTGAAAGACCACAACATATGT	0.373	NSCLC(45;1345 1376 6258 22925)|Ovarian(34;894 1053 6175 12768)		NA											3	13					0	0	0.009096	0	0
OR52M1	119772	broad.mit.edu	37	11	4566790	4566790	+	Missense_Mutation	SNP	C	C	G	rs61751908	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:4566790C>G	uc010qyf.1	+	1	370	c.370C>G	c.(370-372)CGC>GGC	p.R124G		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCTTTTGATCGCTACGTGGC	0.527			NA											15	28					0	0	0.00245	0	0
OR52R1	119695	broad.mit.edu	37	11	4825302	4825302	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:4825302C>A	uc010qym.1	-	1	546	c.546G>T	c.(544-546)CAG>CAT	p.Q182H		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	103	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGAAGAACACCTGGATGAGGC	0.522			NA											18	33					1.33834e-09	1.99227e-09	0.007413	1	0
OR51A4	401666	broad.mit.edu	37	11	4968004	4968004	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:4968004G>A	uc010qys.1	-	1	327	c.327C>T	c.(325-327)TTC>TTT	p.F109F		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	109	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCAGTACTGAGAATCCATGAA	0.448			NA											13	125					0	0	0.004007	0	0
OR51A4	401666	broad.mit.edu	37	11	4968029	4968029	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:4968029G>C	uc010qys.1	-	1	302	c.302C>G	c.(301-303)GCC>GGC	p.A101G		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	101	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GAATTCCTGGGCAAAGCAGGC	0.443			NA											11	92					0	0	0.001855	0	0
MMP26	56547	broad.mit.edu	37	11	5010967	5010967	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:5010967G>A	uc001lzv.2	+	2	207	c.189G>A	c.(187-189)CGG>CGA	p.R63R		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	63					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		AATTCCATCGGAATGGGACAG	0.522			NA											7	15					0	0	0.00308	0	0
OR51V1	283111	broad.mit.edu	37	11	5221672	5221672	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:5221672C>G	uc010qyz.1	-	1	259	c.259G>C	c.(259-261)GTG>CTG	p.V87L		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACTGTGTACACAGTGGACAGC	0.532			NA											14	28					0	0	0.003163	0	0
HBD	3045	broad.mit.edu	37	11	5255238	5255238	+	Missense_Mutation	SNP	C	C	A	rs35329985		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:5255238C>A	uc001maf.1	-	2	493	c.298G>T	c.(298-300)GAT>TAT	p.D100Y		NM_000519	NP_000510	P02042	HBD_HUMAN	delta globin	100					blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;5.69e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTCTCAGGATCCACGTGCAGC	0.478			NA											7	36					8.12818e-05	9.60912e-05	0.001984	1	0
OR56A4	120793	broad.mit.edu	37	11	6023867	6023867	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6023867A>G	uc010qzv.1	-	1	512	c.512T>C	c.(511-513)ATG>ACG	p.M171T		NM_001005179	NP_001005179	Q8NGH8	O56A4_HUMAN	olfactory receptor, family 56, subfamily A,	119	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|skin(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCCATGACCATGAACGTGCA	0.498			NA											14	19					0	0	0.003163	0	0
FAM160A2	84067	broad.mit.edu	37	11	6245023	6245023	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6245023C>A	uc001mcl.3	-	3	953	c.594G>T	c.(592-594)CTG>CTT	p.L198L	FAM160A2_uc001mck.3_Silent_p.L198L|FAM160A2_uc001mcm.2_Silent_p.L198L	NM_001098794	NP_001092264	Q8N612	F16A2_HUMAN	hypothetical protein LOC84067 isoform 2	198					early endosome to late endosome transport|endosome organization|endosome to lysosome transport|lysosome organization|protein transport	FHF complex	protein binding			skin(2)	2						GAGGTGGCTGCAGGAAGAACT	0.602			NA											17	50					2.23348e-06	2.90285e-06	0.004007	1	0
DCHS1	8642	broad.mit.edu	37	11	6661175	6661175	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6661175G>T	uc001mem.1	-	2	2080	c.1670C>A	c.(1669-1671)CCT>CAT	p.P557H		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	557	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGAGGCTAGAGGGGGCAGGCC	0.562			NA											15	48					2.23348e-06	2.90285e-06	0.004007	1	0
OR2AG2	338755	broad.mit.edu	37	11	6790029	6790029	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6790029G>T	uc001meq.1	-	1	160	c.160C>A	c.(160-162)CGG>AGG	p.R54R		NM_001004490	NP_001004490	A6NM03	O2AG2_HUMAN	olfactory receptor, family 2, subfamily AG,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)		Epithelial(150;2.15e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATGTGGAGCCGGGCTTCTATG	0.542			NA											20	49					7.41877e-09	1.07886e-08	0.012319	1	0
OR6A2	8590	broad.mit.edu	37	11	6816649	6816649	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6816649G>T	uc001mes.1	-	1	491	c.291C>A	c.(289-291)ATC>ATA	p.I97I		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCTCAAAGGAGATTAGCTGTC	0.468			NA											15	19					7.93312e-07	1.05115e-06	0.00245	1	0
OR10A4	283297	broad.mit.edu	37	11	6898042	6898042	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6898042C>T	uc010rat.1	+	1	164	c.164C>T	c.(163-165)GCA>GTA	p.A55V		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCTGACTCTGCACTACAAAGT	0.443			NA											14	53					0	0	0.001855	0	0
OR10A4	283297	broad.mit.edu	37	11	6898667	6898667	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:6898667C>A	uc010rat.1	+	1	789	c.789C>A	c.(787-789)CCC>CCA	p.P263P		NM_207186	NP_997069	Q9H209	O10A4_HUMAN	olfactory receptor, family 10, subfamily A,	263	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		ATTTCCGACCCCAATCCAGTG	0.517			NA											14	39					9.31168e-06	1.16912e-05	0.001855	1	0
MRVI1	10335	broad.mit.edu	37	11	10648107	10648107	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:10648107G>T	uc010rcc.1	-	9	1160	c.774C>A	c.(772-774)GAC>GAA	p.D258E	MRVI1_uc001miw.2_Missense_Mutation_p.D249E|MRVI1_uc010rcb.1_Missense_Mutation_p.D250E|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Missense_Mutation_p.D167E|MRVI1_uc009ygc.1_Missense_Mutation_p.D167E|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	231					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		TCTGCTTCCTGTCAGCTAGCC	0.532			NA											3	13					6.4e-05	7.65288e-05	0.004672	1	0
GALNTL4	374378	broad.mit.edu	37	11	11470442	11470442	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:11470442T>C	uc001mjo.2	-	2	698	c.277A>G	c.(277-279)ACA>GCA	p.T93A		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	93	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		GAGGAGTCTGTGAAGGGCTCG	0.612			NA											5	2					0	0	0.000602	0	0
PIK3C2A	5286	broad.mit.edu	37	11	17111392	17111392	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:17111392G>C	uc001mmq.3	-	32	5020	c.4954C>G	c.(4954-4956)CTG>GTG	p.L1652V	PIK3C2A_uc009ygu.1_Intron|PIK3C2A_uc010rcw.1_Missense_Mutation_p.L1272V|PIK3C2A_uc001mmr.3_Intron	NM_002645	NP_002636	O00443	P3C2A_HUMAN	phosphoinositide-3-kinase, class 2 alpha	1652	C2.				cell communication|phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling	clathrin-coated vesicle|Golgi apparatus|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(4)|central_nervous_system(4)|stomach(1)|ovary(1)	10					Phosphatidylserine(DB00144)	TTCTCCCGCAGAGATTCTGCA	0.413			NA											18	99					0	0	0.007413	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955702	18955702	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:18955702C>A	uc001mpg.2	-	1	848	c.630G>T	c.(628-630)CCG>CCT	p.P210P		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	210	Cytoplasmic (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GCCTGGTCAGCGGTATCTTCC	0.507			NA											6	18					0.00116845	0.00129404	0.001168	1	0
KCNA4	3739	broad.mit.edu	37	11	30033219	30033219	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:30033219C>A	uc001msk.2	-	2	2159	c.1007G>T	c.(1006-1008)AGG>ATG	p.R336M		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	336						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GACGAGATCCCTGTCGTCCCT	0.512			NA											10	63					0.00621372	0.00666455	0.006214	1	0
ABTB2	25841	broad.mit.edu	37	11	34181802	34181802	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:34181802G>T	uc001mvl.1	-	12	2168	c.1938C>A	c.(1936-1938)GCC>GCA	p.A646A		NM_145804	NP_665803	Q8N961	ABTB2_HUMAN	ankyrin repeat and BTB (POZ) domain containing	646							DNA binding			central_nervous_system(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0508)|all_hematologic(20;0.0691)				CACCTAGCCTGGCCGGCAGGG	0.602			NA											14	29					4.3838e-07	5.8727e-07	0.001855	1	0
PAMR1	25891	broad.mit.edu	37	11	35456112	35456112	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:35456112C>A	uc001mwg.2	-	10	1617	c.1574G>T	c.(1573-1575)GGG>GTG	p.G525V	PAMR1_uc001mwf.2_Missense_Mutation_p.G542V|PAMR1_uc010rew.1_Missense_Mutation_p.G414V|PAMR1_uc010rex.1_Missense_Mutation_p.G485V	NM_001001991	NP_001001991	Q6UXH9	PAMR1_HUMAN	regeneration associated muscle protease isoform	525	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(2)	2						GTAGAATTTCCCCAAAACAAC	0.537			NA											7	72					8.12818e-05	9.60912e-05	0.001984	1	0
RAG1	5896	broad.mit.edu	37	11	36597194	36597194	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:36597194A>T	uc001mwu.3	+	2	2464	c.2340A>T	c.(2338-2340)AAA>AAT	p.K780N	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	780					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				ATCGGGTGAAAGGGGTCTCAG	0.493	Pancreas(43;321 1249 3212 48200)|Esophageal Squamous(38;49 1003 17530 24363)		NA							Familial_Hemophagocytic_Lymphohistiocytosis				17	75					0	0	0.00499	0	0
EXT2	2132	broad.mit.edu	37	11	44129620	44129620	+	Missense_Mutation	SNP	G	G	T	rs115948531	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:44129620G>T	uc001mxz.2	+	2	692	c.358G>T	c.(358-360)GTC>TTC	p.V120F	EXT2_uc010rfo.1_Missense_Mutation_p.V148F|EXT2_uc001mxy.2_Missense_Mutation_p.V133F|EXT2_uc009ykt.2_Missense_Mutation_p.V120F|EXT2_uc001mya.2_Missense_Mutation_p.V153F	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	120	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						TGACTTTGGCGTCTCTGTCAG	0.458			NA	Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				18	30					1.50039e-11	2.37271e-11	0.012319	1	0
CHRM4	1132	broad.mit.edu	37	11	46407467	46407467	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:46407467A>T	uc001nct.1	-	1	641	c.641T>A	c.(640-642)CTG>CAG	p.L214Q		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	214	Helical; Name=5; (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	GTGGATGTACAGCACCGTCAT	0.597	Esophageal Squamous(171;1020 1936 4566 30205 42542)		NA											5	15					0	0	0.000602	0	0
CKAP5	9793	broad.mit.edu	37	11	46783552	46783552	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:46783552T>C	uc001ndi.1	-	32	4329	c.4219A>G	c.(4219-4221)AAT>GAT	p.N1407D	CKAP5_uc009ylg.1_Missense_Mutation_p.N1293D|CKAP5_uc001ndj.1_Missense_Mutation_p.N1407D|CKAP5_uc001ndh.1_Missense_Mutation_p.N336D	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1407					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TCACTCACATTTCCAATCAGT	0.438	Ovarian(4;85 273 2202 4844 13323)		NA											8	58					0	0	0.00308	0	0
DDB2	1643	broad.mit.edu	37	11	47256366	47256366	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:47256366G>T	uc001neb.2	+	6	956	c.761G>T	c.(760-762)TGT>TTT	p.C254F	DDB2_uc001nec.2_Intron|DDB2_uc009yli.1_Missense_Mutation_p.C190F|DDB2_uc001ned.2_Intron|DDB2_uc001nee.2_Intron|DDB2_uc001nef.2_Intron|DDB2_uc001neg.2_Missense_Mutation_p.C113F|DDB2_uc001neh.2_RNA	NM_000107	NP_000098	Q92466	DDB2_HUMAN	damage-specific DNA binding protein 2	254	WD 3.				nucleotide-excision repair, DNA damage removal|protein autoubiquitination|protein polyubiquitination|response to UV	nucleoplasm|protein complex	damaged DNA binding|protein binding			kidney(2)|ovary(1)	3						AACCCATGCTGTGATTGGTTC	0.537			NA	Mis|N			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				11	20					4.68919e-08	6.60997e-08	0.008291	1	0
PTPRJ	5795	broad.mit.edu	37	11	48146544	48146544	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:48146544G>T	uc001ngp.3	+	6	1254	c.899G>T	c.(898-900)CGG>CTG	p.R300L	PTPRJ_uc001ngo.3_Missense_Mutation_p.R300L	NM_002843	NP_002834	Q12913	PTPRJ_HUMAN	protein tyrosine phosphatase, receptor type, J	300	Extracellular (Potential).|Fibronectin type-III 3.				contact inhibition|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of MAP kinase activity|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of protein kinase B signaling cascade|negative regulation of T cell receptor signaling pathway|negative regulation of vascular permeability|platelet-derived growth factor receptor signaling pathway|positive chemotaxis|positive regulation of focal adhesion assembly|positive regulation of protein kinase B signaling cascade|positive regulation of survival gene product expression	cell surface|cell-cell junction|immunological synapse|integral to plasma membrane|ruffle membrane	beta-catenin binding|delta-catenin binding|gamma-catenin binding|mitogen-activated protein kinase binding|platelet-derived growth factor receptor binding|protein tyrosine phosphatase activity			breast(3)|kidney(3)|ovary(1)|skin(1)	8						GAGAGAAGCCGGGCAGGGAGC	0.587			NA											40	253					7.05121e-23	1.32162e-22	0.010771	1	0
OR4A47	403253	broad.mit.edu	37	11	48511136	48511136	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:48511136C>A	uc010rhx.1	+	1	792	c.792C>A	c.(790-792)CCC>CCA	p.P264P		NM_001005512	NP_001005512	Q6IF82	O4A47_HUMAN	olfactory receptor, family 4, subfamily A,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGACCTTCCCCATTGACAAAT	0.423			NA											48	115					1.86277e-20	3.43834e-20	0.00361	1	0
LOC440040	440040	broad.mit.edu	37	11	49598243	49598243	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:49598243C>A	uc010rhy.1	+	2	834	c.356C>A	c.(355-357)CCT>CAT	p.P119H	LOC440040_uc009ymb.2_Missense_Mutation_p.P119H	NR_027044				SubName: Full=cDNA FLJ60249, highly similar to Metabotropic glutamate receptor 5;												0						GTCATTGGGCCTGGTTCCAGT	0.502			NA											3	25					3.59834e-05	4.39136e-05	0.001168	1	0
TRIM48	79097	broad.mit.edu	37	11	55032683	55032683	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55032683A>G	uc010rid.1	+	2	438	c.352A>G	c.(352-354)ATG>GTG	p.M118V		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	102	B box-type.					intracellular	zinc ion binding				0						GACAAAGAAGATGTTCTGTGA	0.532			NA											7	58					0	0	0.001984	0	0
TRIM48	79097	broad.mit.edu	37	11	55032762	55032762	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55032762C>A	uc010rid.1	+	2	517	c.431C>A	c.(430-432)CCC>CAC	p.P144H		NM_024114	NP_077019	Q8IWZ4	TRI48_HUMAN	tripartite motif-containing 48	128	B box-type.					intracellular	zinc ion binding				0						AGACACTGTCCCGCTGAGTGG	0.493			NA											7	33					2.17888e-05	2.68607e-05	0.006214	1	0
OR4S2	219431	broad.mit.edu	37	11	55418948	55418948	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55418948C>A	uc001nhs.1	+	1	569	c.569C>A	c.(568-570)ACA>AAA	p.T190K		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				TGCACAGAAACATACATTGTT	0.448			NA											32	140					6.53348e-20	1.20465e-19	0.003755	1	0
OR4S2	219431	broad.mit.edu	37	11	55419038	55419038	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55419038T>A	uc001nhs.1	+	1	659	c.659T>A	c.(658-660)CTA>CAA	p.L220Q		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	220	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				AGCATCATCCTAGTTTCCCTG	0.493			NA											20	92					0	0	0.007413	0	0
OR5L1	219437	broad.mit.edu	37	11	55578958	55578958	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55578958T>A	uc001nhw.1	+	1	16	c.16T>A	c.(16-18)TGC>AGC	p.C6S		NM_001004738	NP_001004738	Q8NGL2	OR5L1_HUMAN	olfactory receptor, family 5, subfamily L,	6	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(2)	5		all_epithelial(135;0.208)				CAAGGAAAACTGCACCACTGT	0.398			NA											16	124					0	0	0.009535	0	0
OR5D18	219438	broad.mit.edu	37	11	55587679	55587679	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55587679G>T	uc010rin.1	+	1	574	c.574G>T	c.(574-576)GAT>TAT	p.D192Y		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	192	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TTCTTGCTCTGATACTTACAT	0.403			NA											43	93					6.57855e-14	1.11501e-13	0.009718	1	0
OR5L2	26338	broad.mit.edu	37	11	55595022	55595022	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55595022A>T	uc001nhy.1	+	1	328	c.328A>T	c.(328-330)ACT>TCT	p.T110S		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				ATGTGGAGTCACTGAGGTCTT	0.493			NA								HNSCC(27;0.073)			13	58					0	0	0.001368	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735707	55735707	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55735707G>C	uc010rit.1	-	1	233	c.233C>G	c.(232-234)ACT>AGT	p.T78S		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	78	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TCCTTTCTGAGTCCAAATGTC	0.383			NA											6	44					0	0	0.001168	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798067	55798068	+	Missense_Mutation	DNP	CC	CC	AT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55798067_55798068CC>AT	uc010riw.1	+	1	173_174	c.173_174CC>AT	c.(172-174)CCC>CAT	p.P58H		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	58	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					CTTCAAATTCCCATGTATTATT	0.342			NA											9	27					0	0	0.004672	0	0
OR5AS1	219447	broad.mit.edu	37	11	55798258	55798258	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55798258C>A	uc010riw.1	+	1	364	c.364C>A	c.(364-366)CGC>AGC	p.R122S		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					GGCTTATGACCGCTATGCAGC	0.458			NA											16	34					6.31663e-08	8.85996e-08	0.003163	1	0
OR5AS1	219447	broad.mit.edu	37	11	55798783	55798783	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55798783G>T	uc010riw.1	+	1	889	c.889G>T	c.(889-891)GTG>TTG	p.V297L		NM_001001921	NP_001001921	Q8N127	O5AS1_HUMAN	olfactory receptor, family 5, subfamily AS,	297	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|liver(1)|skin(1)	5	Esophageal squamous(21;0.00693)					AAACAAGGATGTGAAAAATGC	0.313			NA											15	46					6.53275e-17	1.16168e-16	0.00245	1	0
OR8H2	390151	broad.mit.edu	37	11	55872770	55872770	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55872770G>A	uc010riy.1	+	1	252	c.252G>A	c.(250-252)GCG>GCA	p.A84A		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					AAACCTTAGCGAACTTACTGA	0.438			NA								HNSCC(53;0.14)			42	269					0	0	0.00361	0	0
OR8J3	81168	broad.mit.edu	37	11	55904431	55904431	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55904431A>C	uc010riz.1	-	1	764	c.764T>G	c.(763-765)ATG>AGG	p.M255R		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CATAAATAGCATTGTCCCATA	0.428			NA											10	74					0	0	0.008291	0	0
OR8H1	219469	broad.mit.edu	37	11	56057627	56057627	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56057627C>G	uc010rje.1	-	1	912	c.912G>C	c.(910-912)ATG>ATC	p.M304I		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					GTCTTCTCTGCATGACTCTAA	0.348			NA											25	89					0	0	0.003954	0	0
OR5R1	219479	broad.mit.edu	37	11	56185245	56185245	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56185245A>C	uc010rji.1	-	1	464	c.464T>G	c.(463-465)GTT>GGT	p.V155G		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GAAGAGGGCAACCAGGAAGCT	0.453			NA											11	107					0	0	0.010729	0	0
OR5M10	390167	broad.mit.edu	37	11	56345057	56345057	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56345057C>A	uc001niz.1	-	1	141	c.141G>T	c.(139-141)CTG>CTT	p.L47L		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	47	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCCTGATCAGCAGGATCATGC	0.468			NA											32	66					2.08457e-15	3.63836e-15	0.010818	1	0
OR5M10	390167	broad.mit.edu	37	11	56345131	56345131	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56345131G>C	uc001niz.1	-	1	67	c.67C>G	c.(67-69)CTA>GTA	p.L23V		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	23	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ATCTTCTCTAGCACTGGGTCG	0.463			NA											21	81					0	0	0.012319	0	0
OR9G9	504191	broad.mit.edu	37	11	56468178	56468178	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56468178G>T	uc010rjn.1	+	1	315	c.315G>T	c.(313-315)GGG>GGT	p.G105G		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	105	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCTCTGCAGGGCTGGCCTATA	0.532			NA											12	96					9.31168e-06	1.16912e-05	0.001855	1	0
OR9G4	283189	broad.mit.edu	37	11	56511071	56511071	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56511071G>T	uc010rjo.1	-	1	217	c.217C>A	c.(217-219)CCT>ACT	p.P73T		NM_001005284	NP_001005284	Q8NGQ1	OR9G4_HUMAN	olfactory receptor, family 9, subfamily G,	73	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						AAGTACATAGGTGTATGCAAG	0.408			NA											10	33					0.00621372	0.00666455	0.006214	1	0
OR5AK2	390181	broad.mit.edu	37	11	56756798	56756798	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:56756798C>T	uc010rjp.1	+	1	410	c.410C>T	c.(409-411)TCC>TTC	p.S137F		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	137	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						GTAATCATGTCCCGAACAGTC	0.443			NA											12	67					0	0	0.010729	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57076401	57076401	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:57076401C>A	uc001njr.2	-	5	4096	c.3784G>T	c.(3784-3786)GGT>TGT	p.G1262C	TNKS1BP1_uc001njs.2_Missense_Mutation_p.G1262C|TNKS1BP1_uc009ymd.1_Missense_Mutation_p.G713C	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1262	Gly-rich.|Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				GCCTCCACACCTGACCAGTCA	0.582			NA											42	136					1.15505e-17	2.07567e-17	0.009718	1	0
PRG3	10394	broad.mit.edu	37	11	57145281	57145281	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:57145281T>A	uc001njv.1	-	5	646	c.536A>T	c.(535-537)GAT>GTT	p.D179V		NM_006093	NP_006084	Q9Y2Y8	PRG3_HUMAN	proteoglycan 3 precursor	179	C-type lectin.				basophil activation|histamine biosynthetic process|immune response|leukotriene biosynthetic process|negative regulation of translation|neutrophil activation|positive regulation of interleukin-8 biosynthetic process|superoxide anion generation		sugar binding				0						GTGGCTCCCATCAGTCCAGCA	0.562	Melanoma(154;1456 2519 19358 45229)		NA											6	26					0	0	0.001984	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947257	57947257	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:57947257T>A	uc001nmj.2	+	3	657	c.341T>A	c.(340-342)CTC>CAC	p.L114H		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				GACTGCTACCTCTTGGCCCTC	0.557			NA											13	60					0	0	0.001855	0	0
OR5B3	441608	broad.mit.edu	37	11	58170407	58170407	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:58170407C>A	uc010rkf.1	-	1	476	c.476G>T	c.(475-477)GGG>GTG	p.G159V		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	159	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AAATGTGTCCCCAGTGTGGAT	0.453			NA											19	50					0.00152264	0.00168193	0.010504	1	0
OR5A1	219982	broad.mit.edu	37	11	59210894	59210894	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:59210894C>A	uc001nnx.1	+	1	253	c.253C>A	c.(253-255)CTC>ATC	p.L85I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	85	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						TCCCAATATGCTCACTGACTT	0.478			NA											11	101					4.68919e-08	6.60997e-08	0.008291	1	0
OR5A1	219982	broad.mit.edu	37	11	59211169	59211169	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:59211169C>A	uc001nnx.1	+	1	528	c.528C>A	c.(526-528)ATC>ATA	p.I176I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						GACCCAACATCATCAACCACT	0.537			NA											100	161					5.25376e-55	1.02307e-54	0.00361	1	0
MS4A4A	51338	broad.mit.edu	37	11	60070044	60070044	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:60070044C>A	uc001noz.2	+	5	410	c.400C>A	c.(400-402)CTA>ATA	p.L134I	MS4A4A_uc001npa.2_Missense_Mutation_p.L115I|MS4A4A_uc001npb.2_Missense_Mutation_p.L115I|MS4A4A_uc001npc.2_Intron	NM_148975	NP_683876	Q96JQ5	M4A4A_HUMAN	membrane-spanning 4-domains, subfamily A, member	134	Cytoplasmic (Potential).					integral to membrane	receptor activity				0						CCGAGGTAGTCTAGGAATGAA	0.294			NA											8	44					5.18039e-06	6.58689e-06	0.00308	1	0
ZP1	22917	broad.mit.edu	37	11	60637239	60637239	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:60637239T>C	uc001nqd.2	+	3	568	c.548T>C	c.(547-549)CTG>CCG	p.L183P	ZP1_uc001nqe.2_5'Flank	NM_207341	NP_997224	P60852	ZP1_HUMAN	zona pellucida glycoprotein 1 precursor	183	Extracellular (Potential).				single fertilization	integral to membrane|plasma membrane|proteinaceous extracellular matrix					0						CCCAGCCCACTGGACCCAGGG	0.632			NA											4	23					0	0	0.000602	0	0
C11orf66	220004	broad.mit.edu	37	11	61249829	61249829	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:61249829C>A	uc001nru.1	+	3	281	c.156C>A	c.(154-156)GGC>GGA	p.G52G	C11orf66_uc009ynq.1_Silent_p.G52G	NM_145017	NP_659454	Q7Z5V6	CK066_HUMAN	IIIG9 protein	52										ovary(1)	1						TAGGCACCGGCTACAAATCAA	0.607			NA									OREG0021002	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	37					0.000978159	0.00109184	0.010729	1	0
SLC22A8	9376	broad.mit.edu	37	11	62763239	62763239	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:62763239G>T	uc001nwo.2	-	7	1074	c.938C>A	c.(937-939)ACC>AAC	p.T313N	SLC22A8_uc001nwn.1_3'UTR|SLC22A8_uc001nwp.2_Missense_Mutation_p.T313N|SLC22A8_uc009yom.2_Missense_Mutation_p.T190N|SLC22A8_uc010rmm.1_Missense_Mutation_p.T222N|SLC22A8_uc009yon.2_Missense_Mutation_p.T313N	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	313	Cytoplasmic (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GTCACTTGCGGTGTACTTGGC	0.597			NA											12	129					2.68362e-12	4.34905e-12	0.001368	1	0
SLC22A8	9376	broad.mit.edu	37	11	62766429	62766429	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:62766429A>T	uc001nwo.2	-	5	861	c.725T>A	c.(724-726)GTG>GAG	p.V242E	SLC22A8_uc001nwn.1_Missense_Mutation_p.V33E|SLC22A8_uc001nwp.2_Missense_Mutation_p.V242E|SLC22A8_uc009yom.2_Missense_Mutation_p.V119E|SLC22A8_uc010rmm.1_Missense_Mutation_p.V151E|SLC22A8_uc009yon.2_Missense_Mutation_p.V242E	NM_004254	NP_004245	Q8TCC7	S22A8_HUMAN	solute carrier family 22 member 8	242	Helical; (Potential).				response to toxin	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|organic anion transmembrane transporter activity			skin(2)|ovary(1)	3						GGGAATGGACACAGTTAACTG	0.562			NA											10	51					0	0	0.006214	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64596949	64596950	+	Missense_Mutation	DNP	CC	CC	GA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:64596949_64596950CC>GA	uc001obs.3	-	30	3960_3961	c.3960_3961GG>TC	c.(3958-3963)ATGGGC>ATTCGC	p.1320_1321MG>IR		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1320_1321	CNH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						TTACCCCAGCCCATGGGCGCTG	0.639			NA											19	27					0	0	0.004672	0	0
ALDH3B1	221	broad.mit.edu	37	11	67790069	67790069	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:67790069C>A	uc010rpy.1	+	10	1072	c.956C>A	c.(955-957)ACG>AAG	p.T319K	ALDH3B1_uc001omz.2_Missense_Mutation_p.T319K|ALDH3B1_uc001ona.2_Missense_Mutation_p.T282K|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	319					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	GCAGCCCCCACGGTGCTGGTG	0.667			NA											19	27					5.35267e-07	7.15935e-07	0.007413	1	0
MRGPRF	116535	broad.mit.edu	37	11	68777349	68777349	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:68777349C>T	uc001ooo.3	-	2	388	c.21G>A	c.(19-21)TGG>TGA	p.W7*	MRGPRF_uc001oop.3_Nonsense_Mutation_p.W7*|uc001ooq.2_5'Flank	NM_001098515	NP_001091985	Q96AM1	MRGRF_HUMAN	MAS-related GPR, member F	7	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			GATGGGCCTCCCAGGAGCAGT	0.672			NA											10	39					0	0	0.006214	0	0
ANO1	55107	broad.mit.edu	37	11	70007788	70007788	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:70007788A>G	uc001opj.2	+	18	2146	c.1841A>G	c.(1840-1842)AAG>AGG	p.K614R	ANO1_uc001opk.1_Missense_Mutation_p.K556R|ANO1_uc001opl.1_RNA|ANO1_uc010rqk.1_Missense_Mutation_p.K323R	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	614	Helical; (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TTCCTGCTGAAGTTTGTGAAT	0.537			NA											24	107					0	0	0.00278	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73066625	73066625	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:73066625C>A	uc001otu.2	+	4	3522	c.3501C>A	c.(3499-3501)AAC>AAA	p.N1167K		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1167	DH.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						ATATCGATAACTTCCTCAATG	0.552			NA											12	43					3.07112e-06	3.94924e-06	0.010729	1	0
MYO7A	4647	broad.mit.edu	37	11	76867736	76867736	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:76867736C>A	uc001oyb.2	+	6	773	c.501C>A	c.(499-501)AGC>AGA	p.S167R	MYO7A_uc010rsl.1_Missense_Mutation_p.S167R|MYO7A_uc010rsm.1_Missense_Mutation_p.S156R|MYO7A_uc001oyc.2_Missense_Mutation_p.S167R	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	167	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						AGACGGAGAGCACAAAGCTGA	0.612			NA											36	39					5.8336e-16	1.02344e-15	0.003271	1	0
FAT3	120114	broad.mit.edu	37	11	92086959	92086959	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:92086959G>A	uc001pdj.3	+	1	1698	c.1681G>A	c.(1681-1683)GAG>AAG	p.E561K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	561	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCATGAAAGTGAGGTCAATGT	0.423			NA								TCGA Ovarian(4;0.039)			11	62					0	0	0.008291	0	0
FAT3	120114	broad.mit.edu	37	11	92258098	92258098	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:92258098C>A	uc001pdj.3	+	2	3608	c.3591C>A	c.(3589-3591)GCC>GCA	p.A1197A		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1197	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATTTTTTTGCCATCAATATCA	0.373			NA								TCGA Ovarian(4;0.039)			8	36					0.000157383	0.000182879	0.00308	1	0
FAT3	120114	broad.mit.edu	37	11	92538504	92538504	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:92538504G>C	uc001pdj.3	+	10	9099	c.9082G>C	c.(9082-9084)GTG>CTG	p.V3028L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3028	Cadherin 27.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CAATAGCCCAGTGTGTGATCA	0.428			NA								TCGA Ovarian(4;0.039)			8	17					0	0	0.00308	0	0
HEPHL1	341208	broad.mit.edu	37	11	93834389	93834389	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:93834389C>G	uc001pep.2	+	14	2620	c.2463C>G	c.(2461-2463)AAC>AAG	p.N821K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	821	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AGGTGGGCAACACCGTCCTGA	0.453			NA											3	108					0	0	0.009096	0	0
SESN3	143686	broad.mit.edu	37	11	94963990	94963990	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:94963990G>C	uc001pfk.1	-	1	257	c.35C>G	c.(34-36)GCC>GGC	p.A12G	SESN3_uc010rug.1_Intron|SESN3_uc001pfl.2_Missense_Mutation_p.A12G	NM_144665	NP_653266	P58005	SESN3_HUMAN	sestrin 3	12					cell cycle arrest	nucleus					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.234)		CAGGTAGTTGGCGGCGGCCGA	0.751			NA											5	15					0	0	0.000602	0	0
MMP8	4317	broad.mit.edu	37	11	102586169	102586169	+	Splice_Site	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:102586169C>T	uc001phe.2	-	7	1002	c.903_splice	c.e7-1	p.R301_splice	MMP8_uc010rut.1_Splice_Site_p.R236_splice|MMP8_uc010ruu.1_Splice_Site_p.R278_splice	NM_002424	NP_002415	P22894	MMP8_HUMAN	matrix metalloproteinase 8 preproprotein						collagen catabolic process|proteolysis	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase activity|zinc ion binding			ovary(3)|breast(1)	4	all_cancers(8;0.00092)|all_epithelial(12;0.00389)|Lung NSC(15;0.227)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0555)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.189)	BRCA - Breast invasive adenocarcinoma(274;0.0141)		CCAGAAGTACCTAACGGAACA	0.383			NA											16	9					0	0	0.003163	0	0
CARD17	440068	broad.mit.edu	37	11	104970149	104970149	+	Splice_Site	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:104970149C>G	uc001pir.1	-	3	292	c.275_splice	c.e3-1	p.G92_splice	CASP1_uc010rve.1_Intron|CASP1_uc010rvf.1_Intron|CASP1_uc010rvg.1_Intron|CASP1_uc010rvh.1_Intron|CASP1_uc010rvi.1_Intron	NM_001007232	NP_001007233	Q5XLA6	CAR17_HUMAN	caspase recruitment domain family, member 17						proteolysis|regulation of apoptosis	cytoplasm	cysteine-type endopeptidase activity|cysteine-type endopeptidase inhibitor activity			ovary(1)	1						GATGTTGGACCTAGAGAAAGA	0.393			NA											13	27					0	0	0.001368	0	0
BUD13	84811	broad.mit.edu	37	11	116633838	116633838	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:116633838C>G	uc001ppn.2	-	4	501	c.467G>C	c.(466-468)CGT>CCT	p.R156P	BUD13_uc001ppo.2_Missense_Mutation_p.R156P|BUD13_uc009yzc.2_Missense_Mutation_p.R156P	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	156	Arg-rich.									large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		GGTGTCATGACGGGCCCTCCT	0.592			NA											31	98					0	0	0.009535	0	0
HYOU1	10525	broad.mit.edu	37	11	118916543	118916543	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:118916543C>A	uc001puu.2	-	25	3081	c.2888G>T	c.(2887-2889)GGA>GTA	p.G963V	HYOU1_uc001put.2_Missense_Mutation_p.G929V|HYOU1_uc010ryu.1_Missense_Mutation_p.G921V|HYOU1_uc010ryv.1_Missense_Mutation_p.G852V|HYOU1_uc001pux.3_Missense_Mutation_p.G963V	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	963						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		TGGCTCGGATCCTGCTTTGGG	0.498			NA											5	34					3.59834e-05	4.39136e-05	0.001168	1	0
ARHGEF12	23365	broad.mit.edu	37	11	120350915	120350915	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:120350915G>T	uc001pxl.1	+	38	4020	c.4013G>T	c.(4012-4014)CGG>CTG	p.R1338L	ARHGEF12_uc009zat.2_Missense_Mutation_p.R1319L|ARHGEF12_uc009zau.1_Missense_Mutation_p.R1235L	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	1338					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		TTTGCTCCACGGGATTCAGTG	0.478			NA	T	MLL	AML								16	44					4.14922e-12	6.67329e-12	0.004007	1	0
TECTA	7007	broad.mit.edu	37	11	121016361	121016361	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:121016361G>T	uc010rzo.1	+	11	3641	c.3641G>T	c.(3640-3642)GGC>GTC	p.G1214V		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1214	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		ACTGATTTTGGCCTGAAGGTT	0.517			NA											7	101					8.12818e-05	9.60912e-05	0.001984	1	0
C11orf63	79864	broad.mit.edu	37	11	122756812	122756812	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:122756812G>T	uc001pym.2	+	2	552	c.255G>T	c.(253-255)CTG>CTT	p.L85L	C11orf63_uc001pyl.1_Silent_p.L85L	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	85										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GGGGAAGCCTGCACGAGATGG	0.532			NA											20	49					1.96292e-10	3.00899e-10	0.010504	1	0
OR6M1	390261	broad.mit.edu	37	11	123676174	123676174	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:123676174T>A	uc010rzz.1	-	1	884	c.884A>T	c.(883-885)CAG>CTG	p.Q295L		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		CAACACTTCCTGTACCTTCTC	0.408			NA											6	44					0	0	0.001984	0	0
OR4D5	219875	broad.mit.edu	37	11	123810330	123810330	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:123810330C>T	uc001pzk.1	+	1	7	c.7C>T	c.(7-9)CCA>TCA	p.P3S		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCAGATGAATCCAGCAAATCA	0.418			NA											9	54					0	0	0.006214	0	0
PKNOX2	63876	broad.mit.edu	37	11	125299986	125299986	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:125299986G>T	uc001qbu.2	+	12	1455	c.1141G>T	c.(1141-1143)GCT>TCT	p.A381S	PKNOX2_uc010saz.1_Missense_Mutation_p.A352S|PKNOX2_uc010sba.1_Missense_Mutation_p.A352S|PKNOX2_uc010sbb.1_Missense_Mutation_p.A317S|PKNOX2_uc001qbv.2_Missense_Mutation_p.A146S	NM_022062	NP_071345	Q96KN3	PKNX2_HUMAN	PBX/knotted 1 homeobox 2	381						nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3		Breast(109;0.00234)|all_lung(97;0.0191)|Lung NSC(97;0.0196)|Medulloblastoma(222;0.0447)|all_neural(223;0.116)		BRCA - Breast invasive adenocarcinoma(274;5.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.117)		CAACTCCATCGCTGCGGGGGT	0.627			NA											7	64					8.12818e-05	9.60912e-05	0.001984	1	0
NFRKB	4798	broad.mit.edu	37	11	129753093	129753093	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:129753093C>T	uc001qfi.2	-	9	1026	c.825G>A	c.(823-825)CCG>CCA	p.P275P	NFRKB_uc001qfg.2_Silent_p.P300P|NFRKB_uc001qfh.2_Silent_p.P298P|NFRKB_uc010sbw.1_Silent_p.P287P	NM_001143835	NP_001137307	Q6P4R8	NFRKB_HUMAN	nuclear factor related to kappaB binding protein	275					DNA recombination|DNA repair|inflammatory response|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	Ino80 complex	DNA binding|protease binding			ovary(3)	3	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0167)|Lung(977;0.171)|LUSC - Lung squamous cell carcinoma(976;0.184)		TCAAAAGGTCCGGGTGATCCT	0.299			NA											20	46					0	0	0.00278	0	0
PRDM10	56980	broad.mit.edu	37	11	129793258	129793258	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:129793258T>C	uc001qfm.2	-	14	2163	c.1931A>G	c.(1930-1932)TAC>TGC	p.Y644C	PRDM10_uc001qfj.2_Missense_Mutation_p.Y558C|PRDM10_uc001qfk.2_Missense_Mutation_p.Y554C|PRDM10_uc001qfl.2_Missense_Mutation_p.Y558C|PRDM10_uc010sbx.1_Missense_Mutation_p.Y554C|PRDM10_uc001qfn.2_Missense_Mutation_p.Y640C	NM_020228	NP_064613	Q9NQV6	PRD10_HUMAN	PR domain containing 10 isoform 1	644	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1	all_hematologic(175;0.0537)	Breast(109;0.000496)|Lung NSC(97;0.000693)|all_lung(97;0.00151)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0174)|Lung(977;0.176)|LUSC - Lung squamous cell carcinoma(976;0.185)		TGTGCACTGGTAGATCTTTTC	0.512			NA									OREG0021513	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	13					0	0	0.009096	0	0
NCAPD3	23310	broad.mit.edu	37	11	134026925	134026925	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:134026925T>C	uc001qhd.1	-	32	4846	c.4240A>G	c.(4240-4242)AGC>GGC	p.S1414G	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA|NCAPD3_uc001qhc.1_Missense_Mutation_p.S364G	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	1414					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		TCGGGGGTGCTGATGGCCCGC	0.507			NA											14	89					0	0	0.004007	0	0
NCAPD3	23310	broad.mit.edu	37	11	134062584	134062584	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:134062584C>A	uc001qhd.1	-	16	2651	c.2045G>T	c.(2044-2046)AGC>ATC	p.S682I	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	682					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GTTAACCTACCTCAGTTCCTG	0.483			NA											10	35					0.00621372	0.00666455	0.006214	1	0
HSN2	378465	broad.mit.edu	37	12	977171	977171	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:977171G>T	uc001qiq.2	+	1	302	c.176G>T	c.(175-177)CGT>CTT	p.R59L	WNK1_uc001qio.3_Intron|WNK1_uc001qip.3_Intron|WNK1_uc001qir.3_Intron	NM_213655	NP_998820			hereditary sensory neuropathy, type II												0	all_cancers(10;0.0107)|all_epithelial(11;0.0151)|Ovarian(42;0.0512)|all_lung(10;0.0521)|Lung NSC(10;0.0987)		OV - Ovarian serous cystadenocarcinoma(31;0.000967)|BRCA - Breast invasive adenocarcinoma(9;0.0178)			TCCCAGCGGCGTAAGAGCACC	0.517			NA											17	73					2.48551e-13	4.12633e-13	0.00499	1	0
ITFG2	55846	broad.mit.edu	37	12	2932953	2932953	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:2932953G>T	uc001qlb.1	+	11	1148	c.1084G>T	c.(1084-1086)GAG>TAG	p.E362*	ITFG2_uc010seb.1_Nonsense_Mutation_p.E185*|ITFG2_uc010sec.1_RNA	NM_018463	NP_060933	Q969R8	ITFG2_HUMAN	integrin alpha FG-GAP repeat containing 2	362											0			OV - Ovarian serous cystadenocarcinoma(31;0.000818)			CGCCTGCAAAGAGGGCCGCAA	0.552			NA											42	169					7.05121e-23	1.32162e-22	0.010771	1	0
PRMT8	56341	broad.mit.edu	37	12	3677990	3677990	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:3677990G>C	uc001qmf.2	+	5	967	c.600G>C	c.(598-600)GTG>GTC	p.V200V	PRMT8_uc009zed.2_Silent_p.V191V|PRMT8_uc009zee.1_RNA|PRMT8_uc001qmg.2_Silent_p.V14V	NM_019854	NP_062828	Q9NR22	ANM8_HUMAN	HMT1 hnRNP methyltransferase-like 4	200					regulation of protein binding	cytoplasm|plasma membrane	histone-arginine N-methyltransferase activity|protein heterodimerization activity|protein homodimerization activity|protein-arginine omega-N asymmetric methyltransferase activity|protein-arginine omega-N monomethyltransferase activity			ovary(3)|central_nervous_system(1)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(31;0.0109)|COAD - Colon adenocarcinoma(12;0.0264)			TCAACACGGTGATCTTTGCCA	0.572			NA											19	76					0	0	0.008871	0	0
FGF6	2251	broad.mit.edu	37	12	4554610	4554610	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:4554610G>T	uc001qmr.1	-	1	171	c.127C>A	c.(127-129)CGT>AGT	p.R43S		NM_020996	NP_066276	P10767	FGF6_HUMAN	fibroblast growth factor 6 precursor	43					angiogenesis|cell proliferation|cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|positive regulation of cell division|positive regulation of cell proliferation	extracellular space	growth factor activity			lung(2)|ovary(1)	3			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)			TTGTTGGCACGGGTGCCTGCA	0.662			NA											26	31					1.1804e-14	2.04554e-14	0.003954	1	0
CDCA3	83461	broad.mit.edu	37	12	6958844	6958844	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:6958844C>A	uc001qrg.2	-	4	557	c.429G>T	c.(427-429)GAG>GAT	p.E143D	CDCA3_uc001qre.2_Missense_Mutation_p.E143D|uc001qrf.1_5'Flank|USP5_uc001qri.3_5'Flank|USP5_uc001qrh.3_5'Flank	NM_031299	NP_112589	Q99618	CDCA3_HUMAN	cell division cycle associated 3	143					cell division|mitosis	cytosol					0						TGGAGGGGAACTCAGTCTGGT	0.547			NA											38	43					6.05902e-23	1.14068e-22	0.003755	1	0
APOBEC1	339	broad.mit.edu	37	12	7805356	7805356	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:7805356G>A	uc001qtb.2	-	3	154	c.120C>T	c.(118-120)TAC>TAT	p.Y40Y	APOBEC1_uc001qtc.2_Translation_Start_Site|APOBEC1_uc010sgf.1_Silent_p.Y40Y	NM_001644	NP_001635	P41238	ABEC1_HUMAN	apolipoprotein B mRNA editing enzyme	40					cytidine to uridine editing|DNA demethylation|lipid metabolic process|mRNA modification|mRNA processing|negative regulation of methylation-dependent chromatin silencing	nucleoplasm	cytidine deaminase activity|RNA binding|zinc ion binding				0						ACTTGATTTCGTAGAGCAGAC	0.448	Pancreas(135;929 1826 4531 10527 41012)		NA											10	39					0	0	0.008291	0	0
PZP	5858	broad.mit.edu	37	12	9348939	9348939	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:9348939G>A	uc001qvl.2	-	10	1108	c.1079C>T	c.(1078-1080)CCC>CTC	p.P360L	PZP_uc009zgl.2_Missense_Mutation_p.P229L	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TGCAAAAAAGGGGATTCCTTG	0.418	Melanoma(125;1402 1695 4685 34487 38571)		NA											7	26					0	0	0.00308	0	0
CLEC12B	387837	broad.mit.edu	37	12	10167231	10167231	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:10167231C>A	uc001qwz.2	+	3	428	c.300C>A	c.(298-300)AAC>AAA	p.N100K	CLEC12B_uc001qwx.1_Missense_Mutation_p.N100K|CLEC12B_uc001qwy.1_5'UTR|CLEC12B_uc009zhe.2_RNA	NM_001129998	NP_001123470	Q2HXU8	CL12B_HUMAN	C-type lectin domain family 12, member B isoform	100	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity|sugar binding				0						GCAACTCCAACAACTTGTCCA	0.428			NA											12	33					7.03913e-09	1.02453e-08	0.001368	1	0
DDX47	51202	broad.mit.edu	37	12	12966355	12966355	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:12966355G>T	uc001rav.2	+	4	652	c.54G>T	c.(52-54)GTG>GTT	p.V18V	DDX47_uc009zhw.1_Silent_p.V18V|DDX47_uc001rax.2_Silent_p.V18V|DDX47_uc001ray.2_Silent_p.V18V|DDX47_uc010shn.1_Silent_p.V18V	NM_016355	NP_057439	Q9H0S4	DDX47_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 47	18						nucleolus|nucleolus	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding				0		Prostate(47;0.0526)		BRCA - Breast invasive adenocarcinoma(232;0.0354)		AGCCGATTGTGGAAGAGGAGG	0.567			NA									OREG0021680	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	9					0.00024832	0.000286393	0.009096	1	0
PIK3C2G	5288	broad.mit.edu	37	12	18573954	18573954	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:18573954C>A	uc001rdt.2	+	16	2388	c.2272C>A	c.(2272-2274)CCA>ACA	p.P758T	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.P799T|PIK3C2G_uc010sic.1_Missense_Mutation_p.P577T	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	758					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				GGAATATCTCCCACAGCTAGT	0.343			NA											23	38					5.49717e-05	6.64665e-05	0.00333	1	0
PDE3A	5139	broad.mit.edu	37	12	20790087	20790087	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:20790087T>G	uc001reh.1	+	9	2077	c.2055T>G	c.(2053-2055)ATT>ATG	p.I685M		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	685					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	TGGACTCAATTATGGAGCAGC	0.343			NA											5	19					0	0	0.001168	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205070	21205070	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:21205070T>A	uc010sin.1	+	9	1231	c.1231T>A	c.(1231-1233)TAT>AAT	p.Y411N	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.Y458N	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	411						membrane	transporter activity				0						ACCACTTTCTTATTGCAACTC	0.313			NA											9	38					0	0	0.004482	0	0
IAPP	3375	broad.mit.edu	37	12	21531345	21531345	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:21531345T>G	uc001rev.2	+	3	407	c.255T>G	c.(253-255)AAT>AAG	p.N85K	SLCO1A2_uc001res.2_Intron|SLCO1A2_uc010siq.1_Intron	NM_000415	NP_000406	P10997	IAPP_HUMAN	islet amyloid polypeptide precursor	85					apoptosis|cell-cell signaling|endocrine pancreas development|signal transduction	extracellular region|soluble fraction	hormone activity				0					Perindopril(DB00790)	AGCCACTGAATTACTTGCCCC	0.398			NA											15	34					0	0	0.00245	0	0
IAPP	3375	broad.mit.edu	37	12	21531349	21531349	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:21531349T>A	uc001rev.2	+	3	411	c.259T>A	c.(259-261)TTG>ATG	p.L87M	SLCO1A2_uc001res.2_Intron|SLCO1A2_uc010siq.1_Intron	NM_000415	NP_000406	P10997	IAPP_HUMAN	islet amyloid polypeptide precursor	87					apoptosis|cell-cell signaling|endocrine pancreas development|signal transduction	extracellular region|soluble fraction	hormone activity				0					Perindopril(DB00790)	ACTGAATTACTTGCCCCTTTA	0.383			NA											8	41					0	0	0.00308	0	0
ST8SIA1	6489	broad.mit.edu	37	12	22354535	22354535	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:22354535C>G	uc001rfo.3	-	5	1504	c.1022G>C	c.(1021-1023)AGA>ACA	p.R341T	ST8SIA1_uc009zix.2_Missense_Mutation_p.R198T	NM_003034	NP_003025	Q92185	SIA8A_HUMAN	alpha-2,8-sialyltransferase 1	341	Lumenal (Potential).				glycosphingolipid biosynthetic process|protein glycosylation	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			ovary(3)	3						CAGCTGCATTCTCAGTGCACC	0.463			NA											31	104					0	0	0.008361	0	0
SOX5	6660	broad.mit.edu	37	12	23687398	23687399	+	Missense_Mutation	DNP	TG	TG	AT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:23687398_23687399TG>AT	uc001rfw.2	-	15	2148_2149	c.2046_2047CA>AT	c.(2044-2049)GCCATG>GCATTG	p.M683L	SOX5_uc001rfx.2_Missense_Mutation_p.M670L|SOX5_uc001rfy.2_Missense_Mutation_p.M562L|SOX5_uc001rfv.2_Missense_Mutation_p.M297L|SOX5_uc010siv.1_Missense_Mutation_p.M670L	NM_006940	NP_008871	P35711	SOX5_HUMAN	SRY (sex determining region Y)-box 5 isoform a	683					transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(5)|lung(1)	6						ATCCCAGCCATGGCGATGGCTC	0.554			NA											14	21					0	0	0.004672	0	0
KRAS	3845	broad.mit.edu	37	12	25398220	25398220	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:25398220A>T	uc001rgp.1	-	2	280	c.99T>A	c.(97-99)GAT>GAA	p.D33E	KRAS_uc001rgq.1_Missense_Mutation_p.D33E|KRAS_uc001rgr.2_RNA	NM_033360	NP_203524	P01116	RASK_HUMAN	c-K-ras2 protein isoform a precursor	33	Effector region.				activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	plasma membrane	GTP binding|GTPase activity|protein binding			large_intestine(12391)|pancreas(3285)|lung(2847)|biliary_tract(521)|ovary(443)|endometrium(339)|haematopoietic_and_lymphoid_tissue(318)|stomach(203)|thyroid(149)|prostate(85)|soft_tissue(77)|small_intestine(62)|upper_aerodigestive_tract(59)|cervix(49)|urinary_tract(48)|skin(38)|liver(31)|breast(28)|testis(17)|oesophagus(15)|central_nervous_system(9)|peritoneum(6)|salivary_gland(6)|kidney(5)|gastrointestinal_tract_(site_indeterminate)(5)|thymus(5)|eye(4)|autonomic_ganglia(2)|bone(2)|genital_tract(1)|penis(1)|adrenal_gland(1)	21052	all_cancers(2;1e-35)|all_epithelial(2;1.97e-38)|all_lung(3;2.1e-23)|Lung NSC(3;1.16e-22)|Acute lymphoblastic leukemia(6;0.00231)|all_hematologic(7;0.00259)|Melanoma(3;0.0301)|Colorectal(261;0.11)|Ovarian(17;0.12)		OV - Ovarian serous cystadenocarcinoma(3;1.23e-21)|Epithelial(3;1.31e-20)|all cancers(3;5.45e-18)|STAD - Stomach adenocarcinoma(2;2.68e-05)			CTATTGTTGGATCATATTCGT	0.373	Pancreas(8;6 143 191 305 2070 2426 4376 10944 11745 26467 38091 50869)		119	Mis		pancreatic|colorectal|lung|thyroid|AML|others				Cardiofaciocutaneous_syndrome|Noonan_syndrome	TSP Lung(1;<1E-08)|Multiple Myeloma(2;<1E-6)			6	11					0	0	0.001168	0	0
REP15	387849	broad.mit.edu	37	12	27849605	27849605	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:27849605A>T	uc001rig.1	+	1	178	c.110A>T	c.(109-111)GAG>GTG	p.E37V		NM_001029874	NP_001025045	Q6BDI9	REP15_HUMAN	RAB15 effector protein	37						early endosome membrane				ovary(1)	1	Lung SC(9;0.0873)					AAACTGAAGGAGTACCTTGGA	0.453			NA											16	11					0	0	0.004007	0	0
TMTC1	83857	broad.mit.edu	37	12	29904677	29904677	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:29904677C>A	uc001rjb.2	-	5	1010	c.536G>T	c.(535-537)GGC>GTC	p.G179V	TMTC1_uc001rjc.1_Missense_Mutation_p.G179V	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	287						integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					AGAGTGGCAGCCACCCCAAGC	0.483			NA											13	36					5.50884e-06	6.94735e-06	0.001368	1	0
TMTC1	83857	broad.mit.edu	37	12	29904703	29904703	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:29904703C>A	uc001rjb.2	-	5	984	c.510G>T	c.(508-510)CGG>CGT	p.R170R	TMTC1_uc001rjc.1_Silent_p.R170R	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	278						integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					TGTGAGGGAACCGCTGCTGCT	0.572			NA											6	23					2.0095e-06	2.62175e-06	0.001984	1	0
TMTC1	83857	broad.mit.edu	37	12	29911707	29911707	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:29911707C>A	uc001rjb.2	-	3	634	c.160G>T	c.(160-162)GCT>TCT	p.A54S	TMTC1_uc001rjc.1_Missense_Mutation_p.A54S	NM_175861	NP_787057	Q8IUR5	TMTC1_HUMAN	transmembrane and tetratricopeptide repeat	162	Helical; (Potential).					integral to membrane	binding				0	Lung NSC(12;7.61e-10)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.032)					ACGATCCCAGCCACCTTGGAA	0.378			NA											6	21					3.59834e-05	4.39136e-05	0.001168	1	0
SYT10	341359	broad.mit.edu	37	12	33559883	33559883	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:33559883A>G	uc001rll.1	-	3	1215	c.918T>C	c.(916-918)TAT>TAC	p.Y306Y	SYT10_uc009zju.1_Silent_p.Y116Y	NM_198992	NP_945343	Q6XYQ8	SYT10_HUMAN	synaptotagmin X	306	Cytoplasmic (Potential).|C2 1.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(1)|skin(1)	2	Lung NSC(5;8.37e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0334)					TTAGTTGATCATATGCTACAG	0.343			NA											7	20					0	0	0.004482	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43858450	43858450	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:43858450C>T	uc010skx.1	-	10	1453	c.1453G>A	c.(1453-1455)GGA>AGA	p.G485R		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	485	Disintegrin.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TGCTTGTTTCCATCATATCGT	0.398			NA											10	55					0	0	0.006214	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471813	47471813	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:47471813C>A	uc001rpm.2	-	3	1628	c.973G>T	c.(973-975)GGT>TGT	p.G325C	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.G325C|AMIGO2_uc001rpl.2_Missense_Mutation_p.G325C	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	325	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					TTATCTGGACCCACCCAGATG	0.468			NA											20	91					1.50039e-11	2.37271e-11	0.012319	1	0
DDN	23109	broad.mit.edu	37	12	49391466	49391466	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:49391466C>A	uc001rsv.1	-	2	1211	c.1193G>T	c.(1192-1194)AGC>ATC	p.S398I	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	398	Interaction with ACTN1.					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						GAGTGTCTGGCTATGGCGGGG	0.612			NA											5	35					0.000157383	0.000182879	0.00308	1	0
CELA1	1990	broad.mit.edu	37	12	51723585	51723585	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:51723585C>G	uc001ryi.1	-	7	683	c.642G>C	c.(640-642)GTG>GTC	p.V214V		NM_001971	NP_001962	Q9UNI1	CELA1_HUMAN	chymotrypsin-like elastase family, member 1	214	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			breast(1)	1						ACTTGCCATTCACCAAGCAAT	0.557			NA											26	58					0	0	0.005443	0	0
KRT71	112802	broad.mit.edu	37	12	52946599	52946599	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:52946599G>A	uc001sao.2	-	1	333	c.263C>T	c.(262-264)GCC>GTC	p.A88V		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	88	Head.|Gly-rich.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		AGGCCCCAGGGCCACACTGCC	0.642			NA											11	58					0	0	0.010729	0	0
KRT79	338785	broad.mit.edu	37	12	53223890	53223890	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:53223890C>T	uc001sbb.2	-	4	805	c.772G>A	c.(772-774)GCA>ACA	p.A258T	KRT79_uc001sba.2_Missense_Mutation_p.A29T	NM_175834	NP_787028	Q5XKE5	K2C79_HUMAN	keratin 6L	258	Rod.|Coil 1B.					keratin filament	structural molecule activity			ovary(2)|skin(2)	4						CCCATGTATGCTGCATCCACA	0.582			NA											11	22					0	0	0.010729	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54910700	54910700	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:54910700G>T	uc001sgc.3	+	11	1098	c.1019G>T	c.(1018-1020)CGG>CTG	p.R340L	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.R290L	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	340					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CATTGTCAACGGCGGCAATTT	0.507			NA											20	76					3.51602e-12	5.67099e-12	0.008871	1	0
ITGA7	3679	broad.mit.edu	37	12	56089355	56089355	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:56089355C>A	uc001shh.2	-	14	2186	c.1966G>T	c.(1966-1968)GCC>TCC	p.A656S	ITGA7_uc001shg.2_Missense_Mutation_p.A652S|ITGA7_uc010sps.1_Missense_Mutation_p.A559S|ITGA7_uc009znw.2_5'UTR|ITGA7_uc009znx.2_Missense_Mutation_p.A533S	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	696	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CAGAAGCGGGCGCGGACCAGC	0.587			NA											14	47					1.3612e-06	1.79244e-06	0.003163	1	0
SILV	6490	broad.mit.edu	37	12	56351763	56351763	+	Missense_Mutation	SNP	C	C	A	rs145035997		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:56351763C>A	uc001sip.2	-	5	606	c.575G>T	c.(574-576)CGG>CTG	p.R192L	SILV_uc001siq.2_Missense_Mutation_p.R192L|SILV_uc010spx.1_Missense_Mutation_p.R106L|SILV_uc001sir.2_Missense_Mutation_p.R192L	NM_006928	NP_008859	P40967	PMEL_HUMAN	silver homolog	192					melanin biosynthetic process|melanosome organization	endoplasmic reticulum membrane|extracellular region|Golgi apparatus|integral to membrane|melanosome|multivesicular body membrane|plasma membrane	protein binding				0						CCGGGATCCCCGGCGATGGTA	0.567			NA											22	33					1.50039e-11	2.37271e-11	0.012319	1	0
PAN2	9924	broad.mit.edu	37	12	56726626	56726626	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:56726626C>A	uc001skx.2	-	2	626	c.253G>T	c.(253-255)GAG>TAG	p.E85*	PAN2_uc001skz.2_Nonsense_Mutation_p.E85*|PAN2_uc001sky.2_Nonsense_Mutation_p.E85*	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	85					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						AGCATCTCCTCGTGCAAGTCA	0.512			NA											21	67					1.55795e-14	2.67526e-14	0.012319	1	0
ARHGAP9	64333	broad.mit.edu	37	12	57872537	57872537	+	Missense_Mutation	SNP	G	G	T	rs142371581	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:57872537G>T	uc001sod.2	-	6	726	c.533C>A	c.(532-534)CCG>CAG	p.P178Q	ARHGAP9_uc001snz.2_5'Flank|ARHGAP9_uc001soa.2_5'Flank|ARHGAP9_uc001sob.2_Missense_Mutation_p.P107Q|ARHGAP9_uc001soc.2_Missense_Mutation_p.P107Q|ARHGAP9_uc001soe.1_Missense_Mutation_p.P186Q|ARHGAP9_uc010sro.1_Missense_Mutation_p.P107Q	NM_032496	NP_115885	Q9BRR9	RHG09_HUMAN	Rho GTPase activating protein 9 isoform 1	107					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding			lung(1)	1			GBM - Glioblastoma multiforme(3;3.37e-34)			AAACAACTTCGGCCCTGGAAA	0.567			NA											8	21					0.000157383	0.000182879	0.00308	1	0
CTDSP2	10106	broad.mit.edu	37	12	58220837	58220837	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:58220837T>C	uc001sqm.2	-	4	825	c.296A>G	c.(295-297)CAA>CGA	p.Q99R	CTDSP2_uc010ssg.1_5'Flank|CTDSP2_uc009zqf.2_5'UTR|CTDSP2_uc009zqg.2_Intron|uc001sqn.2_5'Flank|MIR26A2_hsa-mir-26a-2|MI0000750_5'Flank	NM_005730	NP_005721	O14595	CTDS2_HUMAN	nuclear LIM interactor-interacting factor 2	99	FCP1 homology.				protein dephosphorylation	nucleus|soluble fraction	CTD phosphatase activity|metal ion binding			central_nervous_system(1)	1	all_neural(12;0.00559)|Glioma(12;0.0143)|Melanoma(17;0.122)					GATCCTTCCTTGATCTTCCTC	0.502			NA											26	39					0	0	0.005443	0	0
DPY19L2	283417	broad.mit.edu	37	12	63987882	63987882	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:63987882G>C	uc001srp.1	-	16	1746	c.1565C>G	c.(1564-1566)ACA>AGA	p.T522R	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	522					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		ATAAATGTTTGTAGCTAAAAC	0.239			NA											12	14					0	0	0.001855	0	0
DPY19L2	283417	broad.mit.edu	37	12	64041051	64041051	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:64041051G>A	uc001srp.1	-	5	864	c.683C>T	c.(682-684)CCT>CTT	p.P228L	DPY19L2_uc009zqk.1_RNA	NM_173812	NP_776173	Q6NUT2	D19L2_HUMAN	dpy-19-like 2	228					multicellular organismal development|spermatid development	integral to membrane				central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;2.77e-05)	GBM - Glioblastoma multiforme(28;0.044)		TTCATTAAGAGGTTCTATTCT	0.323			NA											10	33					0	0	0.001855	0	0
GRIP1	23426	broad.mit.edu	37	12	66773138	66773138	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:66773138G>T	uc001stk.2	-	19	2628	c.2387C>A	c.(2386-2388)CCA>CAA	p.P796Q	GRIP1_uc010sta.1_Missense_Mutation_p.P740Q|GRIP1_uc001stj.2_Missense_Mutation_p.P578Q|GRIP1_uc001stl.1_Missense_Mutation_p.P688Q|GRIP1_uc001stm.2_Missense_Mutation_p.P796Q	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	848					androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		CTTAGTGACTGGGGACAAGCT	0.483			NA											13	124					6.31663e-08	8.85996e-08	0.003163	1	0
LGR5	8549	broad.mit.edu	37	12	71977430	71977430	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:71977430C>G	uc001swl.2	+	18	1688	c.1640C>G	c.(1639-1641)CCC>CGC	p.P547R	LGR5_uc001swm.2_Missense_Mutation_p.P523R|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	547	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						CTTCTAGGCCCCTTCAAACCC	0.428			NA											23	81					0	0	0.00333	0	0
NAP1L1	4673	broad.mit.edu	37	12	76453598	76453598	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:76453598C>T	uc001sxw.2	-	6	821	c.409G>A	c.(409-411)GAT>AAT	p.D137N	NAP1L1_uc001sxv.2_Missense_Mutation_p.D95N|NAP1L1_uc001sxz.2_Intron|NAP1L1_uc001sxx.2_Missense_Mutation_p.D137N|NAP1L1_uc001sxy.2_Missense_Mutation_p.D74N|NAP1L1_uc010sty.1_Missense_Mutation_p.D95N|NAP1L1_uc010stz.1_5'UTR|NAP1L1_uc010sua.1_Missense_Mutation_p.D137N|NAP1L1_uc001syb.2_Missense_Mutation_p.D137N|NAP1L1_uc001sya.2_Missense_Mutation_p.D95N|NAP1L1_uc001syc.2_Missense_Mutation_p.D137N	NM_139207	NP_631946	P55209	NP1L1_HUMAN	nucleosome assembly protein 1-like 1	137	Asp/Glu-rich (acidic).				DNA replication|nucleosome assembly|positive regulation of cell proliferation	chromatin assembly complex|melanosome	protein binding			ovary(1)|skin(1)	2		Colorectal(145;0.09)				TCTTCTTCATCTGGTTTCCAT	0.289			NA											8	25					0	0	0.00308	0	0
NAV3	89795	broad.mit.edu	37	12	78522620	78522620	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:78522620C>A	uc001syp.2	+	18	4588	c.4415C>A	c.(4414-4416)GCT>GAT	p.A1472D	NAV3_uc001syo.2_Missense_Mutation_p.A1472D|NAV3_uc010sub.1_Missense_Mutation_p.A958D|NAV3_uc009zsf.2_Missense_Mutation_p.A303D	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1472	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						TCTTCTGCAGCTGGAAAATAC	0.443			NA								HNSCC(70;0.22)			17	33					3.52763e-06	4.5192e-06	0.00499	1	0
MYF6	4618	broad.mit.edu	37	12	81101569	81101569	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:81101569C>T	uc001szf.1	+	1	124	c.71C>T	c.(70-72)CCA>CTA	p.P24L		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	24					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						ACTCTGCAGCCATTAGAAGTG	0.527			NA											25	49					0	0	0.00333	0	0
SLC6A15	55117	broad.mit.edu	37	12	85270331	85270331	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:85270331C>A	uc001szv.2	-	6	1305	c.812G>T	c.(811-813)AGA>ATA	p.R271I	SLC6A15_uc010sul.1_Missense_Mutation_p.R164I	NM_182767	NP_877499	Q9H2J7	S6A15_HUMAN	solute carrier family 6, member 15 isoform 1	271					cellular nitrogen compound metabolic process|leucine transport|proline transport	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			pancreas(2)|ovary(1)	3						AAGGAATGCTCTGATGAGGAA	0.318			NA											19	34					2.32416e-17	4.15465e-17	0.002299	1	0
LRRIQ1	84125	broad.mit.edu	37	12	85466740	85466740	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:85466740C>T	uc001tac.2	+	11	2862	c.2751C>T	c.(2749-2751)CAC>CAT	p.H917H	LRRIQ1_uc001tab.1_Silent_p.H917H	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	917										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TCTGCCATCACTTGGGCACCT	0.353			NA											14	19					0	0	0.003163	0	0
ANKS1B	56899	broad.mit.edu	37	12	100169423	100169423	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:100169423C>A	uc001tge.1	-	7	1281	c.864G>T	c.(862-864)GTG>GTT	p.V288V	ANKS1B_uc001tgf.1_Intron|ANKS1B_uc009ztt.1_Silent_p.V254V	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	288						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		TAGATCTTCCCACGCCTTCTA	0.348			NA											9	22					0.000673444	0.00075369	0.008291	1	0
SCYL2	55681	broad.mit.edu	37	12	100728014	100728014	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:100728014A>T	uc001thn.2	+	14	1882	c.1832A>T	c.(1831-1833)GAG>GTG	p.E611V	SCYL2_uc001thm.1_Missense_Mutation_p.E611V	NM_017988	NP_060458	Q6P3W7	SCYL2_HUMAN	SCY1-like 2 protein	611					endosome to lysosome transport|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of clathrin-mediated endocytosis|positive regulation of receptor internalization	clathrin-coated vesicle|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|protein kinase activity|receptor binding			lung(3)|ovary(2)|skin(1)	6						ACTAAACTGGAGCAACTTCAT	0.328			NA											16	36					0	0	0.008871	0	0
SLC5A8	160728	broad.mit.edu	37	12	101551060	101551060	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:101551060C>T	uc001thz.3	-	15	2220	c.1830G>A	c.(1828-1830)TTG>TTA	p.L610L		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	610	Cytoplasmic (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						AGCAGCTTCACAAACGAGTCC	0.373	GBM(60;420 1056 13605 22380 47675)		NA											4	22					0	0	0.009096	0	0
MYBPC1	4604	broad.mit.edu	37	12	102038463	102038463	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:102038463C>A	uc001tii.2	+	10	881	c.779C>A	c.(778-780)CCT>CAT	p.P260H	MYBPC1_uc001tif.1_Missense_Mutation_p.P273H|MYBPC1_uc001tig.2_Missense_Mutation_p.P285H|MYBPC1_uc010svq.1_Missense_Mutation_p.P247H|MYBPC1_uc001tih.2_Missense_Mutation_p.P285H|MYBPC1_uc001tij.2_Missense_Mutation_p.P260H|MYBPC1_uc010svr.1_Missense_Mutation_p.P260H|MYBPC1_uc010svs.1_Missense_Mutation_p.P260H|MYBPC1_uc010svt.1_Missense_Mutation_p.P248H|MYBPC1_uc010svu.1_Missense_Mutation_p.P241H|MYBPC1_uc001tik.2_Missense_Mutation_p.P234H	NM_206820	NP_996556	Q00872	MYPC1_HUMAN	myosin binding protein C, slow type isoform 3	260	Ig-like C2-type 2.				cell adhesion|muscle filament sliding	cytosol|myofibril|myosin filament	actin binding|structural constituent of muscle|titin binding			ovary(2)|liver(1)|skin(1)	4						ATTCTTGATCCTGCATATCAG	0.348			NA											4	18					0.00024832	0.000286393	0.009096	1	0
BTBD11	121551	broad.mit.edu	37	12	107712990	107712990	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:107712990G>T	uc001tmk.1	+	1	794	c.273G>T	c.(271-273)CTG>CTT	p.L91L	BTBD11_uc009zut.1_Silent_p.L91L|BTBD11_uc001tmj.2_Silent_p.L91L	NM_001018072	NP_001018082	A6QL63	BTBDB_HUMAN	BTB (POZ) domain containing 11 isoform a	91						integral to membrane	DNA binding			skin(2)|ovary(1)	3						CGCGGCTGCTGCCGGACCTAG	0.706			NA											3	6					6.4e-05	7.65288e-05	0.004672	1	0
SSH1	54434	broad.mit.edu	37	12	109182873	109182873	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:109182873C>A	uc001tnm.2	-	15	2128	c.2041G>T	c.(2041-2043)GCC>TCC	p.A681S	SSH1_uc001tnl.2_Missense_Mutation_p.A369S	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	681					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						GGTAGGAAGGCTGGCTGGGTG	0.657			NA											9	14					0.000442599	0.000502282	0.006214	1	0
SSH1	54434	broad.mit.edu	37	12	109200079	109200079	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:109200079C>G	uc001tnm.2	-	9	910	c.823G>C	c.(823-825)GAG>CAG	p.E275Q	SSH1_uc001tnl.2_5'Flank|SSH1_uc010sxg.1_Missense_Mutation_p.E286Q|SSH1_uc001tnn.3_Missense_Mutation_p.E275Q	NM_018984	NP_061857	Q8WYL5	SSH1_HUMAN	slingshot 1 isoform 1	275					actin cytoskeleton organization|cell morphogenesis|cellular response to ATP|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of cellular protein metabolic process|regulation of lamellipodium assembly	cleavage furrow|cytoplasm|cytoskeleton|lamellipodium|midbody|plasma membrane	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(4)	4						TGTCTTACCTCTTTGGAAGTC	0.527			NA											47	78					0	0	0.00361	0	0
MYL2	4633	broad.mit.edu	37	12	111351114	111351114	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:111351114C>T	uc001try.3	-	5	360	c.289G>A	c.(289-291)GAA>AAA	p.E97K	MYL2_uc001trx.3_Missense_Mutation_p.E78K	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	97	EF-hand 2.				cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						AGAATGGTTTCCTCAGGGTCC	0.587	GBM(14;268 426 18829 21617 25540)		NA											15	27					0	0	0.003163	0	0
CUX2	23316	broad.mit.edu	37	12	111729346	111729346	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:111729346C>A	uc001tsa.1	+	5	579	c.426C>A	c.(424-426)CTC>CTA	p.L142L	CUX2_uc001tsb.1_Silent_p.L197L	NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	142						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CCGAGCTCCTCAGCCCCAAAG	0.602			NA											8	20					0.00621372	0.00666455	0.006214	1	0
C12orf51	283450	broad.mit.edu	37	12	112622545	112622545	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:112622545C>T	uc009zwc.2	-	54	8977	c.8959G>A	c.(8959-8961)GAC>AAC	p.D2987N		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						ACGCCCTCGTCCAGGTGGGTG	0.667			NA											30	90					0	0	0.012213	0	0
C12orf49	79794	broad.mit.edu	37	12	117175674	117175674	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:117175674C>T	uc001tvz.1	-	1	170	c.32G>A	c.(31-33)CGG>CAG	p.R11Q	RNFT2_uc009zwn.2_5'Flank|RNFT2_uc001twb.3_5'Flank|RNFT2_uc001twa.3_5'Flank|C12orf49_uc009zwm.1_Silent_p.P33P	NM_024738	NP_079014	Q9H741	CL049_HUMAN	hypothetical protein LOC79794 precursor	11						extracellular region				ovary(1)	1	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0281)		CCGCAGAAGCCGGCGCCACAC	0.617			NA											6	8					0	0	0.001168	0	0
NOS1	4842	broad.mit.edu	37	12	117685232	117685232	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:117685232C>T	uc001twm.1	-	18	3430	c.2744G>A	c.(2743-2745)AGG>AAG	p.R915K		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	915	FMN (By similarity).|Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	CTTCAGGATCCTCTCCCCTCC	0.562	Esophageal Squamous(162;1748 2599 51982 52956)		NA											19	49					0	0	0.008871	0	0
ZCCHC8	55596	broad.mit.edu	37	12	122973980	122973980	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:122973980T>A	uc001ucn.2	-	5	585	c.454A>T	c.(454-456)AAA>TAA	p.K152*	ZCCHC8_uc009zxp.2_5'UTR|ZCCHC8_uc009zxq.2_5'UTR	NM_017612	NP_060082	Q6NZY4	ZCHC8_HUMAN	zinc finger, CCHC domain containing 8	152						catalytic step 2 spliceosome	nucleic acid binding|protein binding|zinc ion binding				0	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;5.25e-05)|Epithelial(86;0.000113)|BRCA - Breast invasive adenocarcinoma(302;0.202)		TCTTCCACTTTGTGGTCCTCC	0.368			NA											6	12					0	0	0.001984	0	0
TMEM132B	114795	broad.mit.edu	37	12	126135313	126135313	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:126135313T>A	uc001uhe.1	+	7	1721	c.1713T>A	c.(1711-1713)CGT>CGA	p.R571R	TMEM132B_uc001uhf.1_Silent_p.R83R	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	571	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		CCACAGTGCGTGTCCTCACCC	0.592			NA											10	30					0	0	0.010729	0	0
ULK1	8408	broad.mit.edu	37	12	132403802	132403802	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:132403802T>G	uc001uje.2	+	24	2825	c.2557T>G	c.(2557-2559)TTC>GTC	p.F853V		NM_003565	NP_003556	O75385	ULK1_HUMAN	Unc-51-like kinase 1	853					autophagy|protein localization|regulation of autophagy	autophagic vacuole|cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	ATP binding|protein complex binding|protein serine/threonine kinase activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.07e-08)|Epithelial(86;2.56e-07)|all cancers(50;3.01e-07)		CACGCTGCTGTTCGTGCAGCA	0.682			NA											9	16					0	0	0.008291	0	0
GOLGA3	2802	broad.mit.edu	37	12	133354352	133354352	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:133354352G>A	uc001ukz.1	-	19	4181	c.3622C>T	c.(3622-3624)CAC>TAC	p.H1208Y	GOLGA3_uc001ula.1_Missense_Mutation_p.H1208Y	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	1208	Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		GCCTTGAAGTGGCGGCGGTTA	0.617			NA											11	11					0	0	0.008291	0	0
GOLGA3	2802	broad.mit.edu	37	12	133372567	133372567	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:133372567C>A	uc001ukz.1	-	11	2899	c.2340G>T	c.(2338-2340)GCG>GCT	p.A780A	GOLGA3_uc001ula.1_Silent_p.A780A|GOLGA3_uc001ulb.2_Silent_p.A780A	NM_005895	NP_005886	Q08378	GOGA3_HUMAN	Golgi autoantigen, golgin subfamily a, 3	780	Potential.				intra-Golgi vesicle-mediated transport	Golgi cisterna membrane|Golgi transport complex	protein binding|transporter activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0176)|Lung NSC(355;0.204)		OV - Ovarian serous cystadenocarcinoma(86;2.27e-08)|Epithelial(86;3.34e-07)|all cancers(50;9.4e-06)		CCTGCAAAGCCGCCTCCAAGA	0.587			NA											12	31					2.27111e-07	3.08624e-07	0.001368	1	0
LNX2	222484	broad.mit.edu	37	13	28122554	28122554	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:28122554T>A	uc001url.3	-	10	2300	c.1991A>T	c.(1990-1992)CAC>CTC	p.H664L		NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	664	PDZ 4.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		TAGTGCAGAGTGGCTCATGCC	0.453			NA											4	13					0	0	0.009096	0	0
FLT1	2321	broad.mit.edu	37	13	29004227	29004227	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:29004227A>G	uc001usb.3	-	8	1351	c.1066T>C	c.(1066-1068)TCT>CCT	p.S356P	FLT1_uc010aar.1_Missense_Mutation_p.S356P|FLT1_uc001usc.3_Missense_Mutation_p.S356P|FLT1_uc010tdp.1_Missense_Mutation_p.S356P	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	356	Ig-like C2-type 4.|Extracellular (Potential).				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	ACTTTCATAGAGAGCCGGTAA	0.433			NA											13	46					0	0	0.00245	0	0
PDS5B	23047	broad.mit.edu	37	13	33275556	33275556	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:33275556A>G	uc010abf.2	+	17	1995	c.1837A>G	c.(1837-1839)ATA>GTA	p.I613V	PDS5B_uc010abg.2_RNA	NM_015032	NP_055847	Q9NTI5	PDS5B_HUMAN	PDS5, regulator of cohesion maintenance, homolog	613					cell division|cell proliferation|mitotic sister chromatid cohesion|negative regulation of cell proliferation	chromatin|nucleus	ATP binding|DNA binding|identical protein binding			ovary(2)|lung(1)|pancreas(1)	4		Lung SC(185;0.0367)		all cancers(112;5.55e-06)|Epithelial(112;2.7e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00303)|BRCA - Breast invasive adenocarcinoma(63;0.0204)		ACCTGTGCACATAGATACCGA	0.393			NA											13	6					0	0	0.001855	0	0
NBEA	26960	broad.mit.edu	37	13	35615209	35615209	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:35615209G>T	uc001uvb.2	+	3	640	c.434G>T	c.(433-435)CGA>CTA	p.R145L		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	145						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCCATTCTACGAAAAAGTGTT	0.408			NA											27	48					1.33986e-20	2.47583e-20	0.004656	1	0
DCLK1	9201	broad.mit.edu	37	13	36367543	36367543	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:36367543G>T	uc001uvf.2	-	16	2251	c.2018C>A	c.(2017-2019)CCC>CAC	p.P673H	DCLK1_uc001uve.3_Missense_Mutation_p.P366H|DCLK1_uc010teh.1_Missense_Mutation_p.P366H|DCLK1_uc010abk.2_Missense_Mutation_p.P193H	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	673					cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		ATTCGGCTTGGGGCCTGTGTT	0.403			NA											48	47					1.35964e-18	2.46943e-18	0.00361	1	0
CSNK1A1L	122011	broad.mit.edu	37	13	37679016	37679016	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:37679016G>T	uc001uwm.1	-	1	786	c.378C>A	c.(376-378)TAC>TAA	p.Y126*		NM_145203	NP_660204	Q8N752	KC1AL_HUMAN	casein kinase 1, alpha 1-like	126	Protein kinase.				Wnt receptor signaling pathway	cytoplasm	ATP binding|protein serine/threonine kinase activity			large_intestine(1)	1		Lung NSC(96;7.97e-05)|Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.109)		all cancers(112;3.58e-07)|Epithelial(112;1.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00695)|BRCA - Breast invasive adenocarcinoma(63;0.0117)|GBM - Glioblastoma multiforme(144;0.0407)		TTGTATGCACGTATTCAATTC	0.403			NA											8	64					3.09899e-07	4.18449e-07	0.004482	1	0
TRPC4	7223	broad.mit.edu	37	13	38225495	38225495	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:38225495G>T	uc001uws.2	-	8	2221	c.1986C>A	c.(1984-1986)AGC>AGA	p.S662R	TRPC4_uc010abv.2_Missense_Mutation_p.S242R|TRPC4_uc001uwt.2_Missense_Mutation_p.S662R|TRPC4_uc010tey.1_Missense_Mutation_p.S662R|TRPC4_uc010abw.2_Missense_Mutation_p.S489R|TRPC4_uc010abx.2_Missense_Mutation_p.S662R|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	662	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GAGACTTGGGGCTCGGGATGA	0.423			NA											12	53					6.40141e-05	7.65288e-05	0.010729	1	0
TRPC4	7223	broad.mit.edu	37	13	38237773	38237773	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:38237773G>T	uc001uws.2	-	6	1703	c.1468C>A	c.(1468-1470)CTG>ATG	p.L490M	TRPC4_uc010abv.2_Missense_Mutation_p.L70M|TRPC4_uc001uwt.2_Missense_Mutation_p.L490M|TRPC4_uc010tey.1_Missense_Mutation_p.L490M|TRPC4_uc010abw.2_Missense_Mutation_p.L317M|TRPC4_uc010abx.2_Missense_Mutation_p.L490M|TRPC4_uc010aby.2_Missense_Mutation_p.L490M	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	490	Helical; (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		ATCAGACGCAGAGAACTGAAG	0.438			NA											4	31					0.00909568	0.00964006	0.009096	1	0
ENOX1	55068	broad.mit.edu	37	13	43934144	43934144	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:43934144C>T	uc001uza.3	-	7	732	c.432G>A	c.(430-432)GTG>GTA	p.V144V	ENOX1_uc001uzb.3_Silent_p.V144V|ENOX1_uc001uzc.3_Silent_p.V144V|ENOX1_uc010tfm.1_5'UTR	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	144	RRM.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		CTCCGACAAACACGGTCTTAC	0.378			NA											8	19					0	0	0.00308	0	0
ENOX1	55068	broad.mit.edu	37	13	43935502	43935502	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:43935502G>T	uc001uza.3	-	6	595	c.295C>A	c.(295-297)CTG>ATG	p.L99M	ENOX1_uc001uzb.3_Missense_Mutation_p.L99M|ENOX1_uc001uzc.3_Missense_Mutation_p.L99M|ENOX1_uc010tfm.1_5'Flank	NM_001127615	NP_001121087	Q8TC92	ENOX1_HUMAN	ecto-NOX disulfide-thiol exchanger 1	99	Pro-rich.				electron transport chain|rhythmic process|transport	extracellular space|plasma membrane	nucleic acid binding|nucleotide binding|oxidoreductase activity			pancreas(1)|skin(1)	2		Lung NSC(96;0.000518)|Prostate(109;0.0233)|Hepatocellular(98;0.0268)|Lung SC(185;0.0367)|Breast(139;0.0406)		GBM - Glioblastoma multiforme(144;0.00333)|BRCA - Breast invasive adenocarcinoma(63;0.172)		GGAGGTACCAGTCCAAGGCCT	0.453			NA											14	22					0.000151284	0.000178105	0.001855	1	0
SPERT	220082	broad.mit.edu	37	13	46287685	46287685	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:46287685G>A	uc001van.1	+	3	605	c.525G>A	c.(523-525)CTG>CTA	p.L175L	SPERT_uc001vao.2_Silent_p.L139L	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	175	Potential.					cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		ACAAGTCTCTGCGGGAGGAGA	0.602			NA											8	56					0	0	0.004482	0	0
CYSLTR2	57105	broad.mit.edu	37	13	49281037	49281037	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:49281037C>A	uc010acx.1	+	6	767	c.84C>A	c.(82-84)AGC>AGA	p.S28R	CYSLTR2_uc010acy.1_Missense_Mutation_p.S28R|CYSLTR2_uc010acz.1_Missense_Mutation_p.S28R|CYSLTR2_uc010ada.1_Missense_Mutation_p.S28R|CYSLTR2_uc010adb.1_Missense_Mutation_p.S28R|CYSLTR2_uc010adc.1_Missense_Mutation_p.S28R|CYSLTR2_uc010add.1_Missense_Mutation_p.S28R|CYSLTR2_uc010acw.1_Missense_Mutation_p.S28R|CYSLTR2_uc001vck.2_Missense_Mutation_p.S28R	NM_020377	NP_065110	Q9NS75	CLTR2_HUMAN	cysteinyl leukotriene receptor 2	28	Extracellular (Potential).				immune response	integral to membrane|plasma membrane				lung(2)	2		all_cancers(8;1.66e-53)|all_epithelial(8;1.96e-19)|all_lung(13;9.94e-09)|all_hematologic(8;7.13e-07)|Lung NSC(96;1.72e-06)|Breast(56;1.53e-05)|Acute lymphoblastic leukemia(8;6.86e-05)|Prostate(109;0.00174)|Myeloproliferative disorder(33;0.0179)|Hepatocellular(98;0.0207)|all_neural(104;0.0416)|Lung SC(185;0.0787)		GBM - Glioblastoma multiforme(99;1.19e-09)	Nedocromil(DB00716)	ATAACAACAGCAGGAACTGCA	0.378			NA											8	43					0.00448238	0.00487215	0.004482	1	0
ATP7B	540	broad.mit.edu	37	13	52548750	52548750	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:52548750A>G	uc001vfw.2	-	2	763	c.606T>C	c.(604-606)AAT>AAC	p.N202N	ATP7B_uc010adv.2_Silent_p.N202N|ATP7B_uc001vfx.2_Silent_p.N202N|ATP7B_uc001vfy.2_Silent_p.N202N|ATP7B_uc010tgt.1_Silent_p.N202N|ATP7B_uc010tgu.1_Silent_p.N202N|ATP7B_uc010tgv.1_Silent_p.N202N|ATP7B_uc010tgw.1_Silent_p.N170N	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	202	HMA 2.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		ATCCCATGTCATTTACATGGT	0.473			NA							Wilson_disease				21	83					0	0	0.012319	0	0
NEK3	4752	broad.mit.edu	37	13	52710340	52710340	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:52710340C>T	uc001vgi.2	-	15	1321	c.1086G>A	c.(1084-1086)CAG>CAA	p.Q362Q	NEK3_uc001vgg.2_Silent_p.Q339Q|NEK3_uc001vgh.2_Silent_p.Q366Q|NEK3_uc010tgx.1_RNA|NEK3_uc010tgy.1_Silent_p.Q345Q	NM_152720	NP_689933	P51956	NEK3_HUMAN	NIMA-related kinase 3 isoform a	362					cell division|mitosis	nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00145)|Prostate(109;0.034)|Hepatocellular(98;0.065)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.81e-08)		TTTTCTCCCACTGTCGTCTAT	0.403			NA											14	44					0	0	0.003163	0	0
PCDH8	5100	broad.mit.edu	37	13	53418746	53418746	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:53418746G>T	uc001vhi.2	-	3	3365	c.3162C>A	c.(3160-3162)TCC>TCA	p.S1054S	PCDH8_uc001vhj.2_Silent_p.S957S	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	1054	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		TGCCAGGAGGGGACTGGTAGA	0.562	GBM(36;25 841 9273 49207)		NA											14	63					2.61681e-11	4.11906e-11	0.00245	1	0
PCDH17	27253	broad.mit.edu	37	13	58208940	58208940	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:58208940G>A	uc001vhq.1	+	1	3152	c.2260G>A	c.(2260-2262)GGG>AGG	p.G754R	PCDH17_uc010aec.1_Missense_Mutation_p.G754R	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	754	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GCAGCTGGGTGGGGGCAAGGG	0.557	Melanoma(72;952 1291 1619 12849 33676)		NA											8	31					0	0	0.00308	0	0
PCDH17	27253	broad.mit.edu	37	13	58208942	58208942	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:58208942G>T	uc001vhq.1	+	1	3154	c.2262G>T	c.(2260-2262)GGG>GGT	p.G754G	PCDH17_uc010aec.1_Silent_p.G754G	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	754	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AGCTGGGTGGGGGCAAGGGCA	0.557	Melanoma(72;952 1291 1619 12849 33676)		NA											8	30					5.18039e-06	6.58689e-06	0.00308	1	0
DIAPH3	81624	broad.mit.edu	37	13	60348955	60348955	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:60348955C>T	uc001vht.2	-	26	3385	c.3166G>A	c.(3166-3168)GGT>AGT	p.G1056S	DIAPH3_uc001vhu.2_Missense_Mutation_p.G793S	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	1056	Potential.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		GTCTCATCACCCTCTGTGAAA	0.498			NA											17	26					0	0	0.007413	0	0
DIAPH3	81624	broad.mit.edu	37	13	60566710	60566710	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:60566710C>A	uc001vht.2	-	10	1241	c.1022G>T	c.(1021-1023)TGT>TTT	p.C341F	DIAPH3_uc001vhu.2_Missense_Mutation_p.C78F|DIAPH3_uc001vhv.2_5'Flank|DIAPH3_uc001vhw.1_Missense_Mutation_p.C330F|DIAPH3_uc010aed.1_Missense_Mutation_p.C295F|DIAPH3_uc010aee.1_Missense_Mutation_p.C271F	NM_001042517	NP_001035982	Q9NSV4	DIAP3_HUMAN	diaphanous homolog 3 isoform a	341	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			ovary(2)	2		Breast(118;0.052)|Prostate(109;0.103)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;2.77e-05)		GAGCTGCATACAAGCTACCTA	0.378			NA											3	12					0.004672	0.00503002	0.004672	1	0
DACH1	1602	broad.mit.edu	37	13	72049304	72049304	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:72049304G>A	uc010thn.1	-	11	2475	c.2052C>T	c.(2050-2052)GGC>GGT	p.G684G	DACH1_uc010tho.1_Silent_p.G536G|DACH1_uc010thp.1_Silent_p.G482G	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	736					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		CTGTTCTGCCGCCACTGCGGT	0.408			NA											16	24					0	0	0.00499	0	0
DACH1	1602	broad.mit.edu	37	13	72255997	72255997	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:72255997G>T	uc010thn.1	-	3	1317	c.894C>A	c.(892-894)TCC>TCA	p.S298S	DACH1_uc010tho.1_Silent_p.S298S|DACH1_uc010thp.1_Silent_p.S298S	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	298	Interaction with SIX6 and HDAC3 (By similarity).				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		AGTTCTCTGGGGAGGTGACAC	0.418			NA											3	34					2.89027e-11	4.53689e-11	0.002299	1	0
LOC647288	647288	broad.mit.edu	37	13	75814354	75814354	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:75814354C>G	uc010ths.1	-	1	164	c.123G>C	c.(121-123)TGG>TGC	p.W41C		NR_027466				Homo sapiens mRNA; cDNA DKFZp434F0327 (from clone DKFZp434F0327).												0						CCACCAGTTCCCATGGAAAAC	0.488			NA											4	66					0	0	0.000602	0	0
SPRY2	10253	broad.mit.edu	37	13	80911327	80911327	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:80911327C>A	uc001vli.2	-	2	1492	c.514G>T	c.(514-516)GGC>TGC	p.G172C	SPRY2_uc001vlj.2_Missense_Mutation_p.G172C	NM_005842	NP_005833	O43597	SPY2_HUMAN	sprouty 2	172					epidermal growth factor receptor signaling pathway|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|positive regulation of ERK1 and ERK2 cascade|positive regulation of gene expression|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein kinase B signaling cascade	cytosol|microtubule|ruffle membrane	protein serine/threonine kinase activator activity			ovary(1)|lung(1)	2	Medulloblastoma(90;0.18)	Acute lymphoblastic leukemia(28;0.218)|Breast(118;0.244)		GBM - Glioblastoma multiforme(99;0.0318)		GCGTGCAGGCCCAAATCTTCC	0.552			NA											7	30					1.06961e-07	1.48315e-07	0.00308	1	0
SLITRK1	114798	broad.mit.edu	37	13	84455035	84455035	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:84455035C>A	uc001vlk.2	-	1	1494	c.608G>T	c.(607-609)GGT>GTT	p.G203V		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	203	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		CTCCGCAATACCAGGGATTTG	0.542			NA											15	46					1.52009e-12	2.49195e-12	0.003163	1	0
SLITRK1	114798	broad.mit.edu	37	13	84455189	84455189	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:84455189C>A	uc001vlk.2	-	1	1340	c.454G>T	c.(454-456)GAC>TAC	p.D152Y		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	152	LRR 4.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TTGTTCAAGTCCTGGAAGGCC	0.488			NA											14	49					4.3838e-07	5.8727e-07	0.001855	1	0
SLITRK6	84189	broad.mit.edu	37	13	86368804	86368804	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:86368804G>C	uc001vll.1	-	2	2299	c.1840C>G	c.(1840-1842)CTT>GTT	p.L614V	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	614	Helical; (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		ATAATCAGAAGTCCCAATATT	0.413			NA											15	48					0	0	0.00245	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370512	86370512	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:86370512C>A	uc001vll.1	-	2	591	c.132G>T	c.(130-132)ATG>ATT	p.M44I	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	44	LRRNT 1.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		AATTTATTAGCATTGTGCCAT	0.408			NA											9	29					1.76689e-08	2.52626e-08	0.006214	1	0
ABCC4	10257	broad.mit.edu	37	13	95714958	95714958	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:95714958C>A	uc001vmd.3	-	26	3485	c.3366G>T	c.(3364-3366)CAG>CAT	p.Q1122H	ABCC4_uc010afj.2_Missense_Mutation_p.Q6H|ABCC4_uc010afk.2_Missense_Mutation_p.Q1075H	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	1122	ABC transporter 2.				platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	ACTTGCATACCTGAGGTATGA	0.348			NA											24	79					3.01185e-09	4.44843e-09	0.003954	1	0
FARP1	10160	broad.mit.edu	37	13	99042248	99042248	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:99042248G>T	uc001vnj.2	+	10	1229	c.893G>T	c.(892-894)AGT>ATT	p.S298I	FARP1_uc001vnh.2_Missense_Mutation_p.S298I	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	298	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			CTGATGGCCAGTCGGGATTTC	0.438			NA											15	55					8.60227e-14	1.44648e-13	0.004007	1	0
NALCN	259232	broad.mit.edu	37	13	101714375	101714375	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:101714375A>C	uc001vox.1	-	41	4889	c.4700T>G	c.(4699-4701)GTG>GGG	p.V1567G		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	1567	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					CTGCTTGGCCACCTCCTCCTC	0.532			NA											4	30					0	0	0.001168	0	0
TMCO3	55002	broad.mit.edu	37	13	114175005	114175005	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:114175005G>A	uc001vtu.3	+	8	1661	c.1300G>A	c.(1300-1302)GTC>ATC	p.V434I	TMCO3_uc001vtt.3_Missense_Mutation_p.V434I	NM_017905	NP_060375	Q6UWJ1	TMCO3_HUMAN	transmembrane and coiled-coil domains 3	434	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity				0	Lung NSC(43;0.0161)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0145)|all_epithelial(44;0.00286)|all_lung(25;0.0273)|Breast(118;0.0411)|Lung NSC(25;0.0983)	all cancers(43;0.0317)			CTTCATGGCCGTCATGCCGAC	0.512			NA											3	33					0	0	0.004672	0	0
OR11H12	440153	broad.mit.edu	37	14	19378008	19378008	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:19378008C>G	uc010tkp.1	+	1	415	c.415C>G	c.(415-417)CTT>GTT	p.L139V		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	139	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGATCAGTACCTTGCTATCTG	0.438			NA											10	80					0	0	0.006122	0	0
OR4M1	441670	broad.mit.edu	37	14	20249031	20249031	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20249031G>T	uc010tku.1	+	1	550	c.550G>T	c.(550-552)GTT>TTT	p.V184F		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CATCACACAGGTTGTCCGGAT	0.468			NA											14	164					2.4624e-09	3.65596e-09	0.008871	1	0
OR4K5	79317	broad.mit.edu	37	14	20389373	20389373	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20389373G>T	uc010tkw.1	+	1	608	c.608G>T	c.(607-609)AGT>ATT	p.S203I		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GTGGTCAATAGTGGAATTCTT	0.418			NA											57	87					2.44813e-32	4.71328e-32	0.00361	1	0
OR4K1	79544	broad.mit.edu	37	14	20403925	20403925	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20403925G>C	uc001vwj.1	+	1	100	c.100G>C	c.(100-102)GTC>CTC	p.V34L		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CTTCTCTATAGTCTATGTGAC	0.378			NA											42	173					0	0	0.009718	0	0
OR11G2	390439	broad.mit.edu	37	14	20665680	20665680	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20665680G>T	uc010tlb.1	+	1	186	c.186G>T	c.(184-186)CAG>CAT	p.Q62H		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	62	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GGGAGGGGCAGATCCTCCTCT	0.542			NA											19	18					8.10497e-08	1.13217e-07	0.010504	1	0
OR11G2	390439	broad.mit.edu	37	14	20666300	20666300	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20666300C>A	uc010tlb.1	+	1	806	c.806C>A	c.(805-807)GCA>GAA	p.A269E		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	269	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GTCCCTTCAGCAGCTGGGAGA	0.488			NA											18	145					9.16793e-09	1.32869e-08	0.00499	1	0
OR6S1	341799	broad.mit.edu	37	14	21109704	21109704	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:21109704C>A	uc001vxv.1	-	1	147	c.147G>T	c.(145-147)GGG>GGT	p.G49G		NM_001001968	NP_001001968	Q8NH40	OR6S1_HUMAN	olfactory receptor, family 6, subfamily S,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00304)		Epithelial(56;1.23e-06)|all cancers(55;1.01e-05)	GBM - Glioblastoma multiforme(265;0.0135)		CCCTTACCACCCCCACAATCA	0.463			NA											31	39					5.60225e-13	9.25542e-13	0.009535	1	0
RNASE4	6038	broad.mit.edu	37	14	21167586	21167586	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:21167586G>A	uc001vxy.3	+	2	619	c.56G>A	c.(55-57)GGG>GAG	p.G19E	RNASE4_uc001vxx.3_RNA|RNASE4_uc001vya.2_Missense_Mutation_p.G19E	NM_002937	NP_002928	P34096	RNAS4_HUMAN	ribonuclease, RNase A family, 4 precursor	19					mRNA cleavage	extracellular region	nucleic acid binding|pancreatic ribonuclease activity			central_nervous_system(1)	1	all_cancers(95;0.00304)		Epithelial(56;5.13e-07)|all cancers(55;4.73e-06)	GBM - Glioblastoma multiforme(265;0.0133)		ACCCTGCTGGGGCTGGGGCTG	0.572	Esophageal Squamous(59;1059 1362 26290 51151)		NA											24	81					0	0	0.005443	0	0
ABHD4	63874	broad.mit.edu	37	14	23078735	23078735	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:23078735C>A	uc001wgm.2	+	6	927	c.858C>A	c.(856-858)ATC>ATA	p.I286I	ABHD4_uc010tna.1_3'UTR|ABHD4_uc010tnb.1_RNA	NM_022060	NP_071343	Q8TB40	ABHD4_HUMAN	abhydrolase domain containing 4	286					lipid catabolic process		hydrolase activity			central_nervous_system(1)	1	all_cancers(95;5.49e-05)			GBM - Glioblastoma multiforme(265;0.0153)		TCACTATGATCTACGGGTCCG	0.517			NA											6	46					8.12818e-05	9.60912e-05	0.001984	1	0
MYH6	4624	broad.mit.edu	37	14	23871912	23871912	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:23871912G>T	uc001wjv.2	-	11	1063	c.996C>A	c.(994-996)GCC>GCA	p.A332A	MYH6_uc010akp.1_Silent_p.A332A	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	332	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TCACATCGGTGGCCATGAGCT	0.632			NA											9	40					0.000274275	0.000314197	0.004482	1	0
RABGGTA	5875	broad.mit.edu	37	14	24737089	24737089	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:24737089A>G	uc001wof.2	-	12	1645	c.1223T>C	c.(1222-1224)TTC>TCC	p.F408S	RABGGTA_uc001woe.2_RNA|RABGGTA_uc001wog.2_Missense_Mutation_p.F408S|RABGGTA_uc001woh.2_RNA|RABGGTA_uc001woi.2_RNA	NM_004581	NP_004572	Q92696	PGTA_HUMAN	Rab geranylgeranyltransferase alpha	408					visual perception		Rab geranylgeranyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(265;0.0184)		GAGGGTCTGGAAGTACTGCAG	0.602			NA											3	25					0	0	0.004672	0	0
GZMH	2999	broad.mit.edu	37	14	25077587	25077588	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:25077587_25077588GG>TT	uc001wpr.1	-	2	131_132	c.86_87CC>AA	c.(85-87)CCC>CAA	p.P29Q	GZMH_uc010aly.1_Missense_Mutation_p.P29Q|GZMH_uc010alz.1_Missense_Mutation_p.P29Q	NM_033423	NP_219491	P20718	GRAH_HUMAN	granzyme H precursor	29	Peptidase S1.				apoptosis|cytolysis|proteolysis	cytoplasm	serine-type endopeptidase activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(265;0.0267)		GGCGGGAGTGGGGCTTGGCCTC	0.545			NA											11	101					0	0	0.004672	0	0
NOVA1	4857	broad.mit.edu	37	14	26918139	26918139	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:26918139C>A	uc001wpy.2	-	5	868	c.550G>T	c.(550-552)GGT>TGT	p.G184C	NOVA1_uc001wpz.2_Missense_Mutation_p.G160C|NOVA1_uc001wqa.2_Missense_Mutation_p.G62C	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	187	KH 2.				locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		ATTATCAGACCTGCTGTGCTG	0.398			NA											5	70					0.000602214	0.000676645	0.000602	1	0
AKAP6	9472	broad.mit.edu	37	14	33291653	33291653	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:33291653A>G	uc001wrq.2	+	13	4804	c.4634A>G	c.(4633-4635)AAT>AGT	p.N1545S		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1545					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		AAAAGTGGCAATATAGAAAAG	0.398	Melanoma(49;821 1200 7288 13647 42351)		NA											11	58					0	0	0.010729	0	0
AKAP6	9472	broad.mit.edu	37	14	33292084	33292084	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:33292084A>T	uc001wrq.2	+	13	5235	c.5065A>T	c.(5065-5067)ACA>TCA	p.T1689S		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1689	Ser-rich.				protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		GGCATCTCTAACAGAACTTAG	0.443	Melanoma(49;821 1200 7288 13647 42351)		NA											19	48					0	0	0.006122	0	0
MBIP	51562	broad.mit.edu	37	14	36785946	36785946	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:36785946G>A	uc001wtm.2	-	2	290	c.202C>T	c.(202-204)CCT>TCT	p.P68S	MBIP_uc001wto.2_Missense_Mutation_p.P68S|MBIP_uc010tpy.1_5'UTR|MBIP_uc001wtn.2_Missense_Mutation_p.P68S	NM_016586	NP_057670	Q9NS73	MBIP1_HUMAN	MAP3K12 binding inhibitory protein 1 isoform 1	68					histone H3 acetylation|inactivation of MAPK activity involved in osmosensory signaling pathway	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm|nucleolus	identical protein binding|protein kinase inhibitor activity				0	all_cancers(3;1.55e-52)|all_epithelial(1;2.69e-62)|Breast(36;0.0505)|Hepatocellular(127;0.158)|Esophageal squamous(585;0.164)		Lung(8;1.28e-07)|LUAD - Lung adenocarcinoma(9;3e-07)|Epithelial(34;0.0303)|all cancers(34;0.0781)	GBM - Glioblastoma multiforme(112;0.0191)		AGCAATGCAGGCTGGAATGCC	0.388			NA											4	39					0	0	0.009096	0	0
FSCB	84075	broad.mit.edu	37	14	44975324	44975324	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:44975324G>C	uc001wvn.2	-	1	1176	c.867C>G	c.(865-867)ACC>ACG	p.T289T		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	289						cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		CTTGGACATGGGTCTCTTCAG	0.493			NA											4	39					0	0	0.009096	0	0
C14orf28	122525	broad.mit.edu	37	14	45369870	45369870	+	Missense_Mutation	SNP	A	A	T	rs143625340		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:45369870A>T	uc001wvo.2	+	2	498	c.232A>T	c.(232-234)AGG>TGG	p.R78W	C14orf28_uc001wvp.1_Missense_Mutation_p.R78W	NM_001017923	NP_001017923	Q4W4Y0	CN028_HUMAN	hypothetical protein LOC122525	78										ovary(1)	1						AAACTTCCCTAGGGAACTCTC	0.343			NA											7	18					0	0	0.001984	0	0
FANCM	57697	broad.mit.edu	37	14	45645576	45645576	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:45645576A>T	uc001wwd.3	+	14	3718	c.3619A>T	c.(3619-3621)AGA>TGA	p.R1207*	FANCM_uc010anf.2_Nonsense_Mutation_p.R1181*|FANCM_uc001wwe.3_Nonsense_Mutation_p.R743*|FANCM_uc010ang.2_Nonsense_Mutation_p.R421*	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	1207					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TCGTGATCAGAGAGGTGTACA	0.348			NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				11	38					0	0	0.008291	0	0
DAAM1	23002	broad.mit.edu	37	14	59757977	59757977	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:59757977G>T	uc001xdz.1	+	3	351	c.226G>T	c.(226-228)GCA>TCA	p.A76S	DAAM1_uc001xea.1_Missense_Mutation_p.A76S|DAAM1_uc001xeb.1_Missense_Mutation_p.A76S	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	76	GBD/FH3.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		AGCCATGTTTGCACTTCCAGC	0.338			NA											10	14					3.07112e-06	3.94924e-06	0.010729	1	0
SLC38A6	145389	broad.mit.edu	37	14	61518616	61518616	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:61518616G>T	uc001xfg.1	+	14	1278	c.1162G>T	c.(1162-1164)GTT>TTT	p.V388F	SLC38A6_uc001xfh.1_Missense_Mutation_p.V388F|SLC38A6_uc001xfi.2_RNA|SLC38A6_uc001xfj.1_RNA|SLC38A6_uc001xfk.2_RNA|SLC38A6_uc010trz.1_Missense_Mutation_p.V365F	NM_153811	NP_722518	Q8IZM9	S38A6_HUMAN	solute carrier family 38, member 6	388	Helical; (Potential).				amino acid transport|sodium ion transport	integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(108;0.0981)		TGCAATATATGTTCCTGACAT	0.318			NA											4	25					0.00024832	0.000286393	0.009096	1	0
KCNH5	27133	broad.mit.edu	37	14	63174542	63174542	+	Missense_Mutation	SNP	G	G	T	rs144667189	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:63174542G>T	uc001xfx.2	-	11	2702	c.2651C>A	c.(2650-2652)CCG>CAG	p.P884Q	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	884	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		GTGCTCTAGCGGACTTCGGGC	0.502			NA											10	61					1.76689e-08	2.52626e-08	0.006214	1	0
SYNE2	23224	broad.mit.edu	37	14	64408654	64408654	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:64408654G>T	uc001xgm.2	+	5	519	c.289G>T	c.(289-291)GCC>TCC	p.A97S	SYNE2_uc001xgk.2_Missense_Mutation_p.A97S|SYNE2_uc001xgl.2_Missense_Mutation_p.A97S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	97	CH 1.|Cytoplasmic (Potential).|Actin-binding.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		TATAGAACATGCCTTGACATT	0.328			NA											11	23					7.03913e-09	1.02453e-08	0.001368	1	0
SLC8A3	6547	broad.mit.edu	37	14	70527586	70527586	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:70527586C>A	uc001xly.2	-	3	2609	c.1855G>T	c.(1855-1857)GGT>TGT	p.G619C	SLC8A3_uc001xlu.2_Intron|SLC8A3_uc001xlv.2_5'UTR|SLC8A3_uc001xlw.2_Missense_Mutation_p.G619C|SLC8A3_uc001xlx.2_Intron|SLC8A3_uc001xlz.2_Missense_Mutation_p.G619C|SLC8A3_uc010ara.2_Intron|SLC8A3_uc001xma.2_Intron	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	619	Calx-beta 2.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TTCGGTTCACCAAGGGCAATG	0.308			NA											14	31					0.000308642	0.00035309	0.003163	1	0
SLC8A3	6547	broad.mit.edu	37	14	70633658	70633658	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:70633658T>A	uc001xly.2	-	2	2236	c.1482A>T	c.(1480-1482)CCA>CCT	p.P494P	SLC8A3_uc001xlw.2_Silent_p.P494P|SLC8A3_uc001xlx.2_Silent_p.P494P|SLC8A3_uc001xlz.2_Silent_p.P494P|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	494	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TCCCCTCCTCTGGCTGCTCCT	0.512			NA											26	56					0	0	0.004656	0	0
TMEM90A	646658	broad.mit.edu	37	14	74874330	74874330	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:74874330G>T	uc001xpx.2	-	4	873	c.625C>A	c.(625-627)CTA>ATA	p.L209I		NM_001105579	NP_001099049	A6NDD5	SYN1L_HUMAN	transmembrane protein 90A	209	Helical; (Potential).				response to biotic stimulus	Golgi apparatus|integral to membrane					0				BRCA - Breast invasive adenocarcinoma(234;0.00159)		AGTGTGGCTAGGAAGAGGGCC	0.622			NA											36	56					1.836e-18	3.32396e-18	0.003755	1	0
ESRRB	2103	broad.mit.edu	37	14	76966235	76966235	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:76966235C>T	uc001xsr.2	+	10	1697	c.1326C>T	c.(1324-1326)CCC>CCT	p.P442P	ESRRB_uc001xso.2_RNA	NM_004452	NP_004443	A2VDJ2	A2VDJ2_HUMAN	estrogen-related receptor beta	442						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.0213)		GAGGATCTCCCAAGGATGAAA	0.517			NA											15	24					0	0	0.00245	0	0
C14orf145	145508	broad.mit.edu	37	14	81259188	81259188	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:81259188C>A	uc001xux.2	-	13	1647	c.1476G>T	c.(1474-1476)CAG>CAT	p.Q492H	C14orf145_uc010asz.1_RNA	NM_152446	NP_689659	Q6ZU80	CE128_HUMAN	hypothetical protein LOC145508	492	Potential.					centriole|spindle pole					0				BRCA - Breast invasive adenocarcinoma(234;0.0586)		TAAGCTTCCACTGCCTAATGG	0.458			NA											34	68					1.36161e-19	2.49972e-19	0.004289	1	0
KCNK10	54207	broad.mit.edu	37	14	88729848	88729848	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:88729848T>A	uc001xwo.2	-	2	542	c.85A>T	c.(85-87)AAC>TAC	p.N29Y	KCNK10_uc001xwm.2_Missense_Mutation_p.N34Y|KCNK10_uc001xwn.2_Missense_Mutation_p.N34Y	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	29	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						GGTTGCCCGTTAGTGGCGCTC	0.607			NA											4	57					0	0	0.000602	0	0
KIAA1409	57578	broad.mit.edu	37	14	94007138	94007138	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:94007138C>A	uc001ybv.1	+	10	1037	c.954C>A	c.(952-954)CAC>CAA	p.H318Q	KIAA1409_uc001ybs.1_Missense_Mutation_p.H318Q|KIAA1409_uc001ybu.1_Missense_Mutation_p.H256Q	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	495						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATGATAAACACGATCAGAGGC	0.433			NA											26	40					2.41591e-17	4.31413e-17	0.004656	1	0
SERPINA11	256394	broad.mit.edu	37	14	94914504	94914504	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:94914504G>T	uc001ydd.1	-	2	668	c.608C>A	c.(607-609)ACG>AAG	p.T203K		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	203					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		AACCATGAACGTGTCCTGGCT	0.468			NA											28	45					2.48779e-11	3.92324e-11	0.005443	1	0
SERPINA11	256394	broad.mit.edu	37	14	94914644	94914644	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:94914644G>A	uc001ydd.1	-	2	528	c.468C>T	c.(466-468)AGC>AGT	p.S156S		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	156					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		GCTCCTTGATGCTGTCCAAAT	0.468			NA											40	94					0	0	0.007835	0	0
SERPINA4	5267	broad.mit.edu	37	14	95030053	95030053	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:95030053C>A	uc001ydk.2	+	2	300	c.234C>A	c.(232-234)TCC>TCA	p.S78S	SERPINA4_uc010avd.2_Silent_p.S115S|SERPINA4_uc001ydl.2_Silent_p.S78S	NM_006215	NP_006206	P29622	KAIN_HUMAN	serine (or cysteine) proteinase inhibitor, clade	78					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity			ovary(3)|skin(1)	4				COAD - Colon adenocarcinoma(157;0.211)		TCTTTTTCTCCCCGCTGAGCA	0.617			NA											12	51					4.36969e-10	6.60896e-10	0.001855	1	0
BDKRB2	624	broad.mit.edu	37	14	96707667	96707667	+	Silent	SNP	C	C	A	rs138780728		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:96707667C>A	uc010avm.1	+	3	1198	c.1002C>A	c.(1000-1002)ATC>ATA	p.I334I	BDKRB2_uc010avl.1_3'UTR|BDKRB2_uc010twu.1_Silent_p.I307I|BDKRB2_uc001yfg.2_Silent_p.I334I	NM_000623	NP_000614	P30411	BKRB2_HUMAN	bradykinin receptor B2	334	Helical; Name=7; (Potential).				arachidonic acid secretion|elevation of cytosolic calcium ion concentration|transmembrane receptor protein tyrosine kinase signaling pathway	endosome|integral to plasma membrane	bradykinin receptor activity|phosphatidylinositol phospholipase C activity|protease binding|protein heterodimerization activity|type 1 angiotensin receptor binding			ovary(3)|breast(1)|kidney(1)	5		all_cancers(154;0.0678)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.226)		TGTACGTGATCGTGGGCAAGC	0.562			NA											8	29					0.00307968	0.00336253	0.00308	1	0
HHIPL1	84439	broad.mit.edu	37	14	100118597	100118597	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:100118597G>T	uc010avs.2	+	2	357	c.292G>T	c.(292-294)GAG>TAG	p.E98*	HHIPL1_uc001ygl.1_Nonsense_Mutation_p.E98*	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	98					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				CTATGACGCCGAGGACCCATT	0.532			NA											12	35					3.27435e-08	4.64253e-08	0.00245	1	0
DYNC1H1	1778	broad.mit.edu	37	14	102516461	102516461	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:102516461G>C	uc001yks.2	+	77	13902	c.13738G>C	c.(13738-13740)GCC>CCC	p.A4580P		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4580					cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						ACTGTCCAATGCCATCTCAAC	0.562			NA											17	33					0	0	0.007413	0	0
C14orf180	400258	broad.mit.edu	37	14	105054645	105054645	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:105054645G>T	uc001yow.1	+	4	577	c.276G>T	c.(274-276)AGG>AGT	p.R92S	C14orf180_uc010tyh.1_Missense_Mutation_p.R92S|C14orf180_uc010awy.1_Missense_Mutation_p.R92S	NM_001008404	NP_001008404	Q8N912	CN180_HUMAN	hypothetical protein LOC400258	92						integral to membrane					0		Melanoma(154;0.226)	all cancers(16;0.00405)|OV - Ovarian serous cystadenocarcinoma(23;0.0319)|Epithelial(46;0.0784)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.127)		CCACTGTCAGGGGTGAGTTCT	0.662			NA											29	66					5.77227e-19	1.05063e-18	0.008361	1	0
ADSSL1	122622	broad.mit.edu	37	14	105206120	105206120	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:105206120A>T	uc001ypd.2	+	5	517	c.443A>T	c.(442-444)CAG>CTG	p.Q148L	INF2_uc010tyi.1_Intron|ADSSL1_uc001ype.2_Missense_Mutation_p.Q191L|ADSSL1_uc001ypf.2_RNA	NM_152328	NP_689541	Q8N142	PURA1_HUMAN	adenylosuccinate synthase like 1 isoform 2	148					AMP biosynthetic process|immune system process|purine base metabolic process	cytosol	adenylosuccinate synthase activity|GTP binding|magnesium ion binding|phosphate binding			ovary(1)|central_nervous_system(1)	2		all_cancers(154;0.0896)|Melanoma(154;0.155)|all_epithelial(191;0.172)	all cancers(16;0.00153)|OV - Ovarian serous cystadenocarcinoma(23;0.0148)|Epithelial(46;0.0396)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.18)	L-Aspartic Acid(DB00128)	GACGGACTTCAGGAAGTGCAG	0.592			NA											20	25					0	0	0.012319	0	0
AHNAK2	113146	broad.mit.edu	37	14	105409436	105409436	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:105409436C>T	uc010axc.1	-	7	12472	c.12352G>A	c.(12352-12354)GAC>AAC	p.D4118N	AHNAK2_uc001ypx.2_Missense_Mutation_p.D4018N	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4118						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AGGGACAGGTCCCCCTCCAGC	0.587			NA											69	242					0	0	0.00361	0	0
OR4M2	390538	broad.mit.edu	37	15	22368783	22368783	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:22368783G>T	uc010tzu.1	+	1	208	c.208G>T	c.(208-210)GAT>TAT	p.D70Y	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	70	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GGCCTTCCTTGATATTTGGTA	0.418			NA											85	280					2.56433e-40	4.97643e-40	0.00361	1	0
OR4N4	283694	broad.mit.edu	37	15	22382574	22382574	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:22382574C>G	uc001yuc.1	+	7	1083	c.102C>G	c.(100-102)TTC>TTG	p.F34L	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.F34L	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTTAATTTTCTACCTTATCA	0.423			NA											27	178					0	0	0.005443	0	0
OR4N4	283694	broad.mit.edu	37	15	22383165	22383165	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:22383165A>T	uc001yuc.1	+	7	1674	c.693A>T	c.(691-693)GAA>GAT	p.E231D	LOC727924_uc001yub.1_Intron|OR4N4_uc010tzv.1_Missense_Mutation_p.E231D	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		CAGCTTCTGAAGGGAAGAACA	0.493			NA											11	111					0	0	0.010729	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414250	22414250	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:22414250G>A	uc001yuf.2	+	1	549	c.549G>A	c.(547-549)AGG>AGA	p.R183R		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						GCCCCTTCAGGGCTTTCCCAG	0.453			NA											15	92					0	0	0.003163	0	0
C15orf2	23742	broad.mit.edu	37	15	24921403	24921403	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:24921403C>T	uc001ywo.2	+	1	863	c.389C>T	c.(388-390)CCA>CTA	p.P130L		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	130					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTGCCTTCACCACGTGAGCCG	0.627			NA											11	16					0	0	0.008291	0	0
SNRPN	6638	broad.mit.edu	37	15	25222171	25222171	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:25222171C>A	uc001ywp.1	+	10	1305	c.415C>A	c.(415-417)CAG>AAG	p.Q139K	SNRPN_uc001ywq.1_Missense_Mutation_p.Q139K|SNRPN_uc001ywr.1_Missense_Mutation_p.Q139K|SNRPN_uc001yws.1_Missense_Mutation_p.Q139K|SNRPN_uc001ywt.1_Missense_Mutation_p.Q139K|SNRPN_uc001ywv.1_Missense_Mutation_p.Q142K|SNRPN_uc001yww.1_Missense_Mutation_p.Q139K|SNRPN_uc001ywx.1_Missense_Mutation_p.Q139K|SNRPN_uc001ywz.1_Intron|PAR-SN_uc001yxa.1_Intron|SNRPN_uc001ywy.1_3'UTR	NM_022807	NP_073718	P63162	RSMN_HUMAN	small nuclear ribonucleoprotein polypeptide N	139					RNA splicing	small nuclear ribonucleoprotein complex|spliceosomal complex	identical protein binding|RNA binding			ovary(1)	1		all_cancers(20;9.33e-22)|Breast(32;0.000625)		all cancers(64;3.38e-08)|Epithelial(43;3.45e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000207)|GBM - Glioblastoma multiforme(186;0.125)		GGGACCATCCCAGCAGGTGAG	0.532			NA							Prader-Willsyndrome				9	13					0.00448238	0.00487215	0.004482	1	0
OCA2	4948	broad.mit.edu	37	15	28200349	28200349	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:28200349C>T	uc001zbh.3	-	17	1907	c.1797G>A	c.(1795-1797)CAG>CAA	p.Q599Q	OCA2_uc010ayv.2_Silent_p.Q575Q	NM_000275	NP_000266	Q04671	P_HUMAN	oculocutaneous albinism II	599	Cytoplasmic (Potential).				eye pigment biosynthetic process	endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane|melanosome membrane	arsenite transmembrane transporter activity|citrate transmembrane transporter activity|L-tyrosine transmembrane transporter activity|protein binding			ovary(3)|breast(1)|pancreas(1)	5		all_lung(180;2.93e-12)|Breast(32;0.000315)|Colorectal(260;0.234)		all cancers(64;5.03e-07)|Epithelial(43;2.13e-06)|BRCA - Breast invasive adenocarcinoma(123;0.045)		TTTTGTCCTCCTGTGAGATCT	0.483			NA							Oculocutaneous_Albinism				36	23					0	0	0.009718	0	0
FMN1	342184	broad.mit.edu	37	15	33261322	33261322	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:33261322C>A	uc001zhf.3	-	4	1911	c.1911G>T	c.(1909-1911)ATG>ATT	p.M637I		NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	860					actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		GATTTGATGCCATGCCCTCCA	0.547			NA											10	24					1.08611e-07	1.49384e-07	0.010729	1	0
RYR3	6263	broad.mit.edu	37	15	33945067	33945067	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:33945067C>A	uc001zhi.2	+	32	4361	c.4291C>A	c.(4291-4293)CTG>ATG	p.L1431M	RYR3_uc010bar.2_Missense_Mutation_p.L1431M	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	1431	4 X approximate repeats.|B30.2/SPRY 3.|Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		TGGAAAGGAACTGGGCACCTG	0.557			NA											36	22					2.6416e-12	4.29734e-12	0.00623	1	0
THBS1	7057	broad.mit.edu	37	15	39884809	39884809	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:39884809A>T	uc001zkh.2	+	17	2752	c.2573A>T	c.(2572-2574)AAC>ATC	p.N858I	THBS1_uc010bbi.2_Missense_Mutation_p.N330I	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor	858	TSP type-3 6.				activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	ACCTGTGACAACAATCAGGAT	0.443			NA											5	6					0	0	0.000602	0	0
DISP2	85455	broad.mit.edu	37	15	40657469	40657469	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:40657469C>A	uc001zlk.1	+	6	930	c.841C>A	c.(841-843)CCC>ACC	p.P281T		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	281					smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CTTCTGTGGCCCCCCTGGTAA	0.607			NA											4	27					0.000602214	0.000676645	0.000602	1	0
C15orf23	90417	broad.mit.edu	37	15	40675063	40675063	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:40675063G>T	uc001zll.2	+	1	142	c.27G>T	c.(25-27)CTG>CTT	p.L9L	C15orf23_uc010ucp.1_Silent_p.L9L|C15orf23_uc001zlo.2_Silent_p.L9L|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	9						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		CCCCGCCCCTGGACAGAGTTT	0.592			NA											6	7					8.12818e-05	9.60912e-05	0.001984	1	0
RPAP1	26015	broad.mit.edu	37	15	41829177	41829177	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:41829177C>G	uc001zod.2	-	2	271	c.147G>C	c.(145-147)CCG>CCC	p.P49P		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	49						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		GGTCCTGGAGCGGAGGCCGGT	0.582			NA											22	101					0	0	0.00333	0	0
MGA	23269	broad.mit.edu	37	15	41989078	41989078	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:41989078A>T	uc001zog.1	+	3	1961	c.1870A>T	c.(1870-1872)AAG>TAG	p.K624*	MGA_uc010ucy.1_Nonsense_Mutation_p.K624*|MGA_uc010ucz.1_Nonsense_Mutation_p.K624*	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	624						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		GAAACTCTGTAAGGCAGGACG	0.443			NA											6	4					0	0	0.001168	0	0
MGA	23269	broad.mit.edu	37	15	41989080	41989080	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:41989080G>A	uc001zog.1	+	3	1963	c.1872G>A	c.(1870-1872)AAG>AAA	p.K624K	MGA_uc010ucy.1_Silent_p.K624K|MGA_uc010ucz.1_Silent_p.K624K	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	624						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AACTCTGTAAGGCAGGACGAC	0.443			NA											6	3					0	0	0.001168	0	0
MYO5C	55930	broad.mit.edu	37	15	52562007	52562007	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:52562007C>A	uc010bff.2	-	8	1020	c.883G>T	c.(883-885)GAG>TAG	p.E295*	MYO5C_uc010uga.1_RNA|MYO5C_uc010ugb.1_RNA|MYO5C_uc010ugc.1_Intron	NM_018728	NP_061198	Q9NQX4	MYO5C_HUMAN	myosin VC	295	Myosin head-like.					myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(7)|central_nervous_system(3)|large_intestine(2)|skin(2)	14				all cancers(107;0.0137)		TTCACACCCTCAATGACAGTA	0.388			NA											13	25					0.00316338	0.00344727	0.003163	1	0
WDR72	256764	broad.mit.edu	37	15	53998260	53998260	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:53998260A>T	uc002acj.2	-	10	1008	c.966T>A	c.(964-966)CGT>CGA	p.R322R	WDR72_uc010bfi.1_Silent_p.R322R	NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	322	WD 4.									lung(1)|skin(1)	2				all cancers(107;0.0511)		TAACAAAGGGACGGCTCTGTT	0.383			NA											7	12					0	0	0.001984	0	0
NEDD4	4734	broad.mit.edu	37	15	56130727	56130727	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:56130727C>T	uc002adj.2	-	18	3664	c.3364G>A	c.(3364-3366)GAT>AAT	p.D1122N	NEDD4_uc002adl.2_Missense_Mutation_p.D703N|NEDD4_uc002adi.2_Missense_Mutation_p.D1050N|NEDD4_uc010ugj.1_Missense_Mutation_p.D1106N|NEDD4_uc010bfm.2_Missense_Mutation_p.D1105N|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1122	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		AGTTCTTCATCTATGATAAAC	0.308			NA											9	12					0	0	0.006214	0	0
DAPK2	23604	broad.mit.edu	37	15	64204383	64204383	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:64204383T>A	uc002amr.2	-	10	903	c.872A>T	c.(871-873)CAG>CTG	p.Q291L	DAPK2_uc010uim.1_RNA	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	291	Calmodulin-binding.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		CATGGCTTGCTGGTTGTCCAC	0.622			NA											4	10					0	0	0.009096	0	0
NEO1	4756	broad.mit.edu	37	15	73528767	73528767	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:73528767G>T	uc002avm.3	+	8	1513	c.1371G>T	c.(1369-1371)TTG>TTT	p.L457F	NEO1_uc010ukx.1_Missense_Mutation_p.L457F|NEO1_uc010uky.1_Missense_Mutation_p.L457F|NEO1_uc010ukz.1_5'UTR|NEO1_uc002avn.3_Missense_Mutation_p.L122F	NM_002499	NP_002490	Q92859	NEO1_HUMAN	neogenin homolog 1 precursor	457	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|cell adhesion|positive regulation of muscle cell differentiation	Golgi apparatus|integral to plasma membrane|nucleus				pancreas(1)	1						TCATCAAATTGACGTGGCGGA	0.557			NA											50	26					4.86159e-25	9.23431e-25	0.00361	1	0
CSPG4	1464	broad.mit.edu	37	15	75982619	75982619	+	Missense_Mutation	SNP	C	C	T	rs141025839		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:75982619C>T	uc002baw.2	-	3	880	c.787G>A	c.(787-789)GTG>ATG	p.V263M		NM_001897	NP_001888	Q6UVK1	CSPG4_HUMAN	chondroitin sulfate proteoglycan 4 precursor	263	Extracellular (Potential).|Neurite growth inhibition (By similarity).|Globular or compact configuration stabilized by disulfide bonds.|Laminin G-like 2.				angiogenesis|cell differentiation|intracellular signal transduction|positive regulation of peptidyl-tyrosine phosphorylation|tissue remodeling	apical plasma membrane|cell surface|integral to plasma membrane|intracellular|lamellipodium membrane	protein kinase binding|signal transducer activity			ovary(2)|pancreas(1)	3						TTCTCCACCACGGCCCGCAGG	0.627			NA											23	16					0	0	0.003954	0	0
IL16	3603	broad.mit.edu	37	15	81561978	81561978	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:81561978G>T	uc002bgh.3	+	5	1040	c.664G>T	c.(664-666)GGC>TGC	p.G222C	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.G222C|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.G264C|IL16_uc002bgg.2_Missense_Mutation_p.G222C	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	222	Interaction with GRIN2A.|PDZ 1.				immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						GCTGATGAAGGGCCAGGCTAA	0.592			NA											54	30					4.25531e-23	8.02889e-23	0.00361	1	0
IL16	3603	broad.mit.edu	37	15	81582867	81582867	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:81582867A>T	uc002bgh.3	+	11	1782	c.1406A>T	c.(1405-1407)CAG>CTG	p.Q469L	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.Q469L|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.Q511L|IL16_uc002bgg.2_Missense_Mutation_p.Q469L|IL16_uc002bgi.1_5'UTR|IL16_uc002bgj.2_5'Flank	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	469					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						GAGAGGCATCAGTGGAGTCTG	0.408			NA											18	12					0	0	0.010504	0	0
AP3B2	8120	broad.mit.edu	37	15	83349497	83349497	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:83349497A>G	uc010uoh.1	-	8	959	c.782T>C	c.(781-783)CTA>CCA	p.L261P	AP3B2_uc010uoi.1_Missense_Mutation_p.L261P|AP3B2_uc010uoj.1_Missense_Mutation_p.L229P|AP3B2_uc010uog.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	261					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			GTTCTCCTCTAGTAGGGATTC	0.687			NA											5	16					0	0	0.001984	0	0
SH3GL3	6457	broad.mit.edu	37	15	84241444	84241444	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:84241444G>C	uc002bjw.2	+	5	654	c.459G>C	c.(457-459)GAG>GAC	p.E153D	SH3GL3_uc010uot.1_Missense_Mutation_p.E153D|SH3GL3_uc002bjx.2_Missense_Mutation_p.E84D|SH3GL3_uc002bju.2_Missense_Mutation_p.E161D|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	153	BAR.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						ATTTAAAAGAGATCGGGGTAA	0.338			NA											6	12					0	0	0.001984	0	0
SH3GL3	6457	broad.mit.edu	37	15	84245427	84245427	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:84245427G>T	uc002bjw.2	+	6	753	c.558G>T	c.(556-558)GCG>GCT	p.A186A	SH3GL3_uc010uot.1_Silent_p.A186A|SH3GL3_uc002bjx.2_Silent_p.A117A|SH3GL3_uc002bju.2_Silent_p.A194A|SH3GL3_uc002bjv.2_RNA	NM_003027	NP_003018	Q99963	SH3G3_HUMAN	SH3-domain GRB2-like 3	186	BAR.|Potential.				central nervous system development|endocytosis|signal transduction	early endosome membrane	identical protein binding|lipid binding			pancreas(1)|central_nervous_system(1)|skin(1)	3						TCAGACAAGCGGTAGAAAAAT	0.358			NA											9	10					0.000274275	0.000314197	0.004482	1	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651720	84651720	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:84651720G>C	uc002bjz.3	+	21	3564	c.3340G>C	c.(3340-3342)GAT>CAT	p.D1114H	ADAMTSL3_uc010bmt.1_Missense_Mutation_p.D1114H|ADAMTSL3_uc010bmu.1_Missense_Mutation_p.D1114H	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1114						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			AGAGGTCAGCGATGATCTTGC	0.512			NA											12	30					0	0	0.010729	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100533317	100533317	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:100533317C>T	uc002bvv.1	-	20	2964	c.2885G>A	c.(2884-2886)AGA>AAA	p.R962K		NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	962	TSP type-1 4.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CTCCTCGGCTCTCGGCCTCGT	0.612			NA											13	28					0	0	0.001368	0	0
LMF1	64788	broad.mit.edu	37	16	961035	961035	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:961035G>A	uc002ckj.2	-	4	563	c.559C>T	c.(559-561)CTG>TTG	p.L187L	LMF1_uc010brh.2_5'UTR|LMF1_uc010bri.2_Intron|LMF1_uc002ckk.2_5'UTR|LMF1_uc010uuu.1_RNA|LMF1_uc010uuv.1_RNA	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	187	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				AGAGGGCACAGGAAGATCCCC	0.552			NA											11	12					0	0	0.008291	0	0
IFT140	9742	broad.mit.edu	37	16	1574791	1574791	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:1574791G>A	uc002cmb.2	-	23	3353	c.2991C>T	c.(2989-2991)GTC>GTT	p.V997V	IFT140_uc002clz.2_Silent_p.V610V	NM_014714	NP_055529	Q96RY7	IF140_HUMAN	intraflagellar transport 140	997										ovary(3)|pancreas(1)|skin(1)	5		Hepatocellular(780;0.219)				TTACCTTCTGGACATTGCCCT	0.637			NA											15	44					0	0	0.00245	0	0
TRAF7	84231	broad.mit.edu	37	16	2226101	2226102	+	Missense_Mutation	DNP	GG	GG	AT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:2226101_2226102GG>AT	uc002cow.2	+	19	1897_1898	c.1798_1799GG>AT	c.(1798-1800)GGC>ATC	p.G600I		NM_032271	NP_115647	Q6Q0C0	TRAF7_HUMAN	TNF receptor-associated factor 7	600	WD 6.				activation of MAPKKK activity|apoptosis|regulation of apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic membrane-bounded vesicle|ubiquitin ligase complex	identical protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						GGGCCACGTGGGCACCGTGTAT	0.653			NA											4	16					0	0	0.004672	0	0
CASKIN1	57524	broad.mit.edu	37	16	2239298	2239298	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:2239298T>C	uc010bsg.1	-	5	459	c.427A>G	c.(427-429)ATG>GTG	p.M143V		NM_020764	NP_065815	Q8WXD9	CSKI1_HUMAN	CASK interacting protein 1	143	ANK 3.				signal transduction	cytoplasm				skin(2)	2						TTGTCCACCATGCACGGGTTA	0.577			NA											7	30					0	0	0.00308	0	0
RNPS1	10921	broad.mit.edu	37	16	2314333	2314333	+	Splice_Site	SNP	C	C	A	rs112148202		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:2314333C>A	uc002cpt.2	-	3	618	c.72_splice	c.e3-1	p.R24_splice	RNPS1_uc002cpu.2_Splice_Site_p.R24_splice|RNPS1_uc002cpv.2_Splice_Site|RNPS1_uc002cpw.2_Splice_Site_p.R24_splice|RNPS1_uc002cpx.2_Splice_Site_p.M1_splice|RNPS1_uc010uwa.1_Splice_Site	NM_080594	NP_542161	Q15287	RNPS1_HUMAN	RNA-binding protein S1, serine-rich domain						mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|termination of RNA polymerase II transcription	cytosol|nuclear speck	mRNA 3'-UTR binding|nucleotide binding|protein binding			ovary(1)	1						TGAAGGAGCCCTGGATGGTGA	0.547			NA											38	39					1.07121e-22	1.99677e-22	0.006999	1	0
NTN3	4917	broad.mit.edu	37	16	2522510	2522510	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:2522510G>T	uc002cqj.2	+	1	1011	c.808G>T	c.(808-810)GGC>TGC	p.G270C	TBC1D24_uc002cqk.2_5'Flank|TBC1D24_uc002cql.2_5'Flank	NM_006181	NP_006172	O00634	NET3_HUMAN	netrin 3 precursor	270	Laminin EGF-like 1.				axon guidance|muscle cell differentiation|positive regulation of muscle cell differentiation	proteinaceous extracellular matrix				central_nervous_system(1)	1						GGACACACAGGGCCACCTGAT	0.682			NA											7	32					5.18039e-06	6.58689e-06	0.00308	1	0
PRSS21	10942	broad.mit.edu	37	16	2868930	2868930	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:2868930C>T	uc002crt.2	+	4	616	c.510C>T	c.(508-510)GAC>GAT	p.D170D	PRSS21_uc002crs.2_Silent_p.D168D|PRSS21_uc002crr.2_Silent_p.D170D	NM_006799	NP_006790	Q9Y6M0	TEST_HUMAN	testisin isoform 1	170	Peptidase S1.				proteolysis	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	serine-type endopeptidase activity			ovary(1)|skin(1)	2						ACCGGACAGACTGCTGGGTGA	0.552			NA											4	39					0	0	0.009096	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3140594	3140594	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:3140594C>A	uc002ctv.1	-	5	764	c.676G>T	c.(676-678)GGG>TGG	p.G226W	ZSCAN10_uc002cty.1_Translation_Start_Site|ZSCAN10_uc002ctw.1_Missense_Mutation_p.G144W|ZSCAN10_uc002ctx.1_Missense_Mutation_p.G154W	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	226					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						CAGGCAGCCCCTTTGGGCTCT	0.612			NA											8	52					3.09899e-07	4.18449e-07	0.004482	1	0
ZNF213	7760	broad.mit.edu	37	16	3191229	3191229	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:3191229C>T	uc010uws.1	+	6	1708	c.1261C>T	c.(1261-1263)CGT>TGT	p.R421C	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_3'UTR|ZNF213_uc010bth.2_Missense_Mutation_p.R421C|ZNF213_uc010uwt.1_3'UTR|uc002cuf.1_5'Flank	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	421	C2H2-type 4.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGACCATCGGCGTGTGCACAC	0.657			NA											7	26					0	0	0.00308	0	0
ZNF75A	7627	broad.mit.edu	37	16	3367345	3367345	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:3367345G>T	uc002cut.3	+	6	893	c.367G>T	c.(367-369)GGA>TGA	p.G123*	ZNF75A_uc002cuv.3_RNA	NM_153028	NP_694573	Q96N20	ZN75A_HUMAN	zinc finger protein 75a	123					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						GCACAGAGTGGGAAAATGGCA	0.393			NA											6	18					3.59834e-05	4.39136e-05	0.001168	1	0
USP7	7874	broad.mit.edu	37	16	9009313	9009313	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:9009313C>A	uc002czl.2	-	9	1175	c.976G>T	c.(976-978)GGC>TGC	p.G326C	USP7_uc010uyk.1_Missense_Mutation_p.G227C|USP7_uc010uyj.1_Missense_Mutation_p.G227C|USP7_uc002czk.2_Missense_Mutation_p.G310C|USP7_uc010uyl.1_RNA	NM_003470	NP_003461	Q93009	UBP7_HUMAN	ubiquitin specific peptidase 7	326					interspecies interaction between organisms|multicellular organismal development|protein deubiquitination|regulation of sequence-specific DNA binding transcription factor activity|ubiquitin-dependent protein catabolic process	cytoplasm|PML body	cysteine-type endopeptidase activity|p53 binding|protein C-terminus binding|transcription factor binding|ubiquitin protein ligase binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(3)	3						ACCATTTTGCCGCGGAATAAT	0.343			NA											14	34					4.7546e-09	6.98602e-09	0.004007	1	0
TEKT5	146279	broad.mit.edu	37	16	10788224	10788224	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:10788224C>T	uc002czz.1	-	1	579	c.507G>A	c.(505-507)TTG>TTA	p.L169L		NM_144674	NP_653275	Q96M29	TEKT5_HUMAN	tektin 5	169	Potential.				microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(2)	2						TGACCGTCTCCAAGTTCTGGT	0.612			NA											33	154					0	0	0.003755	0	0
CLEC16A	23274	broad.mit.edu	37	16	11056400	11056400	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:11056400A>T	uc002dao.2	+	3	528	c.298A>T	c.(298-300)ACC>TCC	p.T100S	CLEC16A_uc002dan.3_Missense_Mutation_p.T100S	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	100										ovary(1)|central_nervous_system(1)	2						GCTGCTGCAGACCTTGAACAT	0.478			NA											61	89					0	0	0.00361	0	0
ERCC4	2072	broad.mit.edu	37	16	14029051	14029051	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:14029051G>A	uc002dce.2	+	8	1271	c.1262G>A	c.(1261-1263)AGA>AAA	p.R421K	ERCC4_uc010uyz.1_5'UTR	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	421					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						TCCCAGCTGAGAGACTATATC	0.413			NA	Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				17	46					0	0	0.007413	0	0
XYLT1	64131	broad.mit.edu	37	16	17353101	17353102	+	Missense_Mutation	DNP	GG	GG	TT	rs146043560	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:17353101_17353102GG>TT	uc002dfa.2	-	3	741_742	c.656_657CC>AA	c.(655-657)CCC>CAA	p.P219Q		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	219	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						CTCTGTCCCCGGGAGGCAGCAC	0.589			NA											28	132					0	0	0.004672	0	0
SMG1	23049	broad.mit.edu	37	16	18853565	18853565	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:18853565C>A	uc002dfm.2	-	40	6794	c.6431G>T	c.(6430-6432)GGA>GTA	p.G2144V	SMG1_uc010bwb.2_Missense_Mutation_p.G2004V|SMG1_uc010bwa.2_Missense_Mutation_p.G875V|SMG1_uc002dfo.3_Missense_Mutation_p.G442V	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	2144					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						CCCATCTGATCCAAGAAAGAG	0.418			NA											10	23					0.000442599	0.000502282	0.006214	1	0
PDILT	204474	broad.mit.edu	37	16	20380973	20380973	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:20380973A>T	uc002dhc.1	-	8	1180	c.957T>A	c.(955-957)AAT>AAA	p.N319K		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	319					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						AGACACGTCCATTTCTGGGTT	0.473			NA											20	68					0	0	0.010504	0	0
ACSM5	54988	broad.mit.edu	37	16	20451195	20451195	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:20451195A>T	uc002dhe.2	+	13	1757	c.1610A>T	c.(1609-1611)CAG>CTG	p.Q537L		NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	537					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CGGGAACTCCAGGAGCATGTG	0.493			NA											18	102					0	0	0.00499	0	0
ACSM2A	123876	broad.mit.edu	37	16	20489935	20489935	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:20489935C>A	uc010bwe.2	+	11	1456	c.1217C>A	c.(1216-1218)ACA>AAA	p.T406K	ACSM2A_uc010vax.1_Missense_Mutation_p.T327K|ACSM2A_uc002dhf.3_Missense_Mutation_p.T406K|ACSM2A_uc002dhg.3_Missense_Mutation_p.T406K|ACSM2A_uc010vay.1_Missense_Mutation_p.T327K|ACSM2A_uc002dhh.3_Missense_Mutation_p.T36K	NM_001010845	NP_001010845	Q08AH3	ACS2A_HUMAN	acyl-CoA synthetase medium-chain family member	406					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|metal ion binding			skin(2)|breast(1)	3						CCCCCCGGCACAGAAGGAGAC	0.512			NA											13	48					2.62699e-14	4.48832e-14	0.003163	1	0
DNAH3	55567	broad.mit.edu	37	16	20996803	20996803	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:20996803G>A	uc010vbe.1	-	48	7261	c.7261C>T	c.(7261-7263)CGT>TGT	p.R2421C	DNAH3_uc010vbd.1_5'Flank	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2421	AAA 4 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTCAGGACACGGCAGATCCTA	0.552			NA											10	25					0	0	0.008291	0	0
USP31	57478	broad.mit.edu	37	16	23101980	23101980	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:23101980C>T	uc002dll.2	-	7	1380	c.1380G>A	c.(1378-1380)GTG>GTA	p.V460V		NM_020718	NP_065769	Q70CQ4	UBP31_HUMAN	ubiquitin specific peptidase 31	460					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(3)|lung(3)|breast(2)|pancreas(1)|skin(1)	10				GBM - Glioblastoma multiforme(48;0.0187)		CTCGGTTACACACCAACAGGA	0.438			NA											7	36					0	0	0.00308	0	0
KIAA0556	23247	broad.mit.edu	37	16	27709764	27709764	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:27709764A>G	uc002dow.2	+	9	1080	c.1056A>G	c.(1054-1056)GCA>GCG	p.A352A	KIAA0556_uc002dox.1_Silent_p.A260A	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	352										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						TGGAGAACGCAGCCCTGCAGA	0.642			NA											12	30					0	0	0.010729	0	0
SEZ6L2	26470	broad.mit.edu	37	16	29897000	29897000	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:29897000C>A	uc002duq.3	-	8	1519	c.1279G>T	c.(1279-1281)GAG>TAG	p.E427*	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Nonsense_Mutation_p.E357*|SEZ6L2_uc002dur.3_Nonsense_Mutation_p.E357*|SEZ6L2_uc002dus.3_Nonsense_Mutation_p.E313*|SEZ6L2_uc010vec.1_Nonsense_Mutation_p.E427*|SEZ6L2_uc010ved.1_Nonsense_Mutation_p.E383*	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	427	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						AGACCCCGCTCGGGGACATCG	0.587			NA											18	46					5.3912e-06	6.83959e-06	0.006122	1	0
SEZ6L2	26470	broad.mit.edu	37	16	29900017	29900017	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:29900017G>T	uc002duq.3	-	6	1123	c.883C>A	c.(883-885)CGG>AGG	p.R295R	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|SEZ6L2_uc002dup.3_Silent_p.R225R|SEZ6L2_uc002dur.3_Silent_p.R225R|SEZ6L2_uc002dus.3_Silent_p.R181R|SEZ6L2_uc010vec.1_Silent_p.R295R|SEZ6L2_uc010ved.1_Silent_p.R251R	NM_201575	NP_963869	Q6UXD5	SE6L2_HUMAN	seizure related 6 homolog (mouse)-like 2 isoform	295	Sushi 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane|plasma membrane				ovary(1)|skin(1)	2						TGGGCCGGCCGGGGAGGGAAG	0.642			NA											5	20					0.00198382	0.00217721	0.001984	1	0
TRIM72	493829	broad.mit.edu	37	16	31230632	31230632	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:31230632G>T	uc002ebn.1	+	4	738	c.509G>T	c.(508-510)GGG>GTG	p.G170V	PYDC1_uc002ebo.2_5'Flank	NM_001008274	NP_001008275	Q6ZMU5	TRI72_HUMAN	tripartite motif-containing 72	170					exocytosis|muscle organ development|muscle system process|plasma membrane repair|protein homooligomerization	cytoplasmic vesicle membrane|sarcolemma	phosphatidylserine binding|zinc ion binding				0						CAGTTCCGGGGGGCCGTGGGG	0.657			NA											9	61					4.68919e-08	6.60997e-08	0.008291	1	0
SLC6A10P	386757	broad.mit.edu	37	16	32890622	32890622	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:32890622T>G	uc002edh.1	-	5	440	c.264A>C	c.(262-264)AAA>AAC	p.K88N	SLC6A10P_uc002edi.1_RNA					RecName: Full=Transporter;												0						CGTTGGTGTTTTTGTAGACCA	0.512			NA											3	20					0	0	0.004672	0	0
VPS35	55737	broad.mit.edu	37	16	46705670	46705670	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:46705670C>A	uc002eef.3	-	12	1570	c.1471G>T	c.(1471-1473)GTG>TTG	p.V491L	VPS35_uc002eed.2_Missense_Mutation_p.V312L|VPS35_uc002eee.2_Missense_Mutation_p.V452L	NM_018206	NP_060676	Q96QK1	VPS35_HUMAN	vacuolar protein sorting 35	491					protein transport|retrograde transport, endosome to Golgi	cytosol|endosome|membrane	protein binding				0		all_cancers(37;7.65e-05)|all_epithelial(9;0.000154)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				AAGCGGCCCACAAGGCTCTGC	0.463			NA											9	18					1.58986e-06	2.08065e-06	0.008291	1	0
SALL1	6299	broad.mit.edu	37	16	51171213	51171213	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:51171213G>T	uc010vgs.1	-	3	3816	c.3785C>A	c.(3784-3786)CCA>CAA	p.P1262Q	SALL1_uc010vgr.1_Missense_Mutation_p.P1165Q|SALL1_uc010cbv.2_Missense_Mutation_p.P114Q	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1262					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCCAGGAATTGGAGGGATGCC	0.587	GBM(103;1352 1446 1855 4775 8890)		NA											17	28					9.16793e-09	1.32869e-08	0.00499	1	0
SALL1	6299	broad.mit.edu	37	16	51171227	51171227	+	Missense_Mutation	SNP	G	G	T	rs145423593		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:51171227G>T	uc010vgs.1	-	3	3802	c.3771C>A	c.(3769-3771)AAC>AAA	p.N1257K	SALL1_uc010vgr.1_Missense_Mutation_p.N1160K|SALL1_uc010cbv.2_Missense_Mutation_p.N109K	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1257					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			GGATGCCACCGTTCTGAATGA	0.577	GBM(103;1352 1446 1855 4775 8890)		NA											11	27					3.86212e-05	4.67636e-05	0.008291	1	0
SALL1	6299	broad.mit.edu	37	16	51171426	51171426	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:51171426G>T	uc010vgs.1	-	3	3603	c.3572C>A	c.(3571-3573)GCA>GAA	p.A1191E	SALL1_uc010vgr.1_Missense_Mutation_p.A1094E|SALL1_uc010cbv.2_Missense_Mutation_p.A43E	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	1191					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			ACCCCGTCGTGCAGGGGTGCT	0.453	GBM(103;1352 1446 1855 4775 8890)		NA											5	27					3.59834e-05	4.39136e-05	0.001168	1	0
SALL1	6299	broad.mit.edu	37	16	51174255	51174255	+	Missense_Mutation	SNP	C	C	A	rs80248061	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:51174255C>A	uc010vgs.1	-	2	1909	c.1878G>T	c.(1876-1878)GAG>GAT	p.E626D	SALL1_uc010vgr.1_Missense_Mutation_p.E529D|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	626					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			CCATGCCACTCTCTTCGCTTT	0.652	GBM(103;1352 1446 1855 4775 8890)		NA											6	33					0.00116845	0.00129404	0.001168	1	0
MMP2	4313	broad.mit.edu	37	16	55525805	55525805	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:55525805T>A	uc002ehz.3	+	8	1584	c.1273T>A	c.(1273-1275)TAC>AAC	p.Y425N	MMP2_uc010vhd.1_Missense_Mutation_p.Y349N|MMP2_uc010ccc.2_Missense_Mutation_p.Y375N|MMP2_uc002eia.3_5'Flank	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	425	Required for inhibitor TIMP2 binding.|Collagenase-like 2.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	GGCACCCATTTACACCTACAC	0.612			NA											14	54					0	0	0.003163	0	0
MMP2	4313	broad.mit.edu	37	16	55532201	55532201	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:55532201G>C	uc002ehz.3	+	11	1921	c.1610G>C	c.(1609-1611)GGG>GCG	p.G537A	MMP2_uc010vhd.1_Missense_Mutation_p.G461A|MMP2_uc010ccc.2_Missense_Mutation_p.G487A|MMP2_uc002eia.3_Missense_Mutation_p.G34A	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	537	Required for inhibitor TIMP2 binding.|Hemopexin-like 2.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	TCCACCCCAGGGAATGAATAC	0.612			NA											12	32					0	0	0.00245	0	0
NLRC5	84166	broad.mit.edu	37	16	57060697	57060697	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:57060697G>T	uc002ekk.1	+	6	2067	c.1842G>T	c.(1840-1842)GAG>GAT	p.E614D	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Missense_Mutation_p.E419D|NLRC5_uc002ekl.2_Missense_Mutation_p.E419D|NLRC5_uc002ekm.2_Missense_Mutation_p.E419D|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	614	LRR 1.				defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				AGGTTGTAGAGCTGTGTCACT	0.572			NA											23	29					3.62473e-10	5.51167e-10	0.012319	1	0
CCL17	6361	broad.mit.edu	37	16	57449018	57449018	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:57449018G>T	uc002elj.1	+	3	225	c.96G>T	c.(94-96)GAG>GAT	p.E32D	CCL17_uc010ccz.1_Missense_Mutation_p.E61D	NM_002987	NP_002978	Q92583	CCL17_HUMAN	small inducible cytokine A17 precursor	32					cell-cell signaling|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response|multicellular organismal development	extracellular space	chemokine activity			ovary(1)	1						TGGGCCGGGAGTGCTGCCTGG	0.607			NA											19	86					3.32936e-07	4.48132e-07	0.006122	1	0
COQ9	57017	broad.mit.edu	37	16	57486804	57486804	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:57486804C>T	uc002elq.2	+	3	350	c.334C>T	c.(334-336)CCC>TCC	p.P112S	COQ9_uc002elp.1_Missense_Mutation_p.P112S|COQ9_uc010vhn.1_Missense_Mutation_p.P112S|COQ9_uc010vho.1_Missense_Mutation_p.P112S|COQ9_uc010vhp.1_Missense_Mutation_p.P112S|COQ9_uc002elr.2_Missense_Mutation_p.P112S	NM_020312	NP_064708	O75208	COQ9_HUMAN	coenzyme Q9 homolog precursor	112					ubiquinone biosynthetic process	mitochondrion				breast(1)	1						TGAGTTTGTGCCCGCCCACGG	0.592			NA											4	87					0	0	0.000602	0	0
GPR114	221188	broad.mit.edu	37	16	57600520	57600520	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:57600520A>T	uc002elx.3	+	7	641	c.556A>T	c.(556-558)ACC>TCC	p.T186S	GPR114_uc010vhr.1_Missense_Mutation_p.T186S|GPR114_uc002ely.2_Missense_Mutation_p.T186S	NM_153837	NP_722579	Q8IZF4	GP114_HUMAN	G protein-coupled receptor 114 precursor	186	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)	1						GGAAGGCTACACCCTGACCTG	0.617			NA											24	46					0	0	0.00278	0	0
CDH5	1003	broad.mit.edu	37	16	66436744	66436744	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:66436744C>A	uc002eom.3	+	12	2183	c.2027C>A	c.(2026-2028)CCC>CAC	p.P676H		NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	676	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		cccccgcggcccgcgcTGGAC	0.557			NA											8	8					0.000274275	0.000314197	0.004482	1	0
CDH16	1014	broad.mit.edu	37	16	66949151	66949151	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:66949151C>G	uc002eql.2	-	6	628	c.555G>C	c.(553-555)CGG>CGC	p.R185R	CDH16_uc010cdy.2_Silent_p.R185R|CDH16_uc002eqm.2_Intron	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	185	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GAGCCCCCAGCCGAGGCTCCA	0.517			NA											11	41					0	0	0.008291	0	0
SLC9A5	6553	broad.mit.edu	37	16	67290373	67290373	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:67290373G>T	uc002esm.2	+	6	976	c.913G>T	c.(913-915)GTG>TTG	p.V305L	SLC9A5_uc010cee.2_Missense_Mutation_p.V10L|SLC9A5_uc010vji.1_5'UTR	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	305					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		CTCTCCCAGGGTGACCATGTG	0.547			NA											12	23					2.68362e-12	4.34905e-12	0.001368	1	0
NFATC3	4775	broad.mit.edu	37	16	68156795	68156795	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:68156795C>T	uc002evo.1	+	2	1219	c.1009C>T	c.(1009-1011)CCT>TCT	p.P337S	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.P337S|NFATC3_uc002evm.1_Missense_Mutation_p.P337S|NFATC3_uc002evn.1_Missense_Mutation_p.P337S|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	337					inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		GACTGACATCCCTCTCAAAAC	0.473			NA											25	97					0	0	0.00333	0	0
WWP2	11060	broad.mit.edu	37	16	69965789	69965789	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:69965789G>T	uc002exu.1	+	17	1767	c.1678G>T	c.(1678-1680)GCC>TCC	p.A560S	WWP2_uc002exv.1_Missense_Mutation_p.A560S|WWP2_uc010vlm.1_Missense_Mutation_p.A444S|WWP2_uc010vln.1_Missense_Mutation_p.A178S|WWP2_uc002exw.1_Missense_Mutation_p.A121S|uc002exx.1_5'Flank|MIR140_hsa-mir-140|MI0000456_5'Flank	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	560	HECT.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						TGGGGGCATCGCCAGGTGAGC	0.612			NA											19	70					5.03518e-11	7.86025e-11	0.007413	1	0
ZFHX3	463	broad.mit.edu	37	16	72993483	72993483	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:72993483C>A	uc002fck.2	-	2	1235	c.562G>T	c.(562-564)GCA>TCA	p.A188S	ZFHX3_uc002fcl.2_Intron	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	188					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TACACGGGTGCAGCACACGAA	0.617			NA											23	57					2.89027e-11	4.53689e-11	0.002299	1	0
GLG1	2734	broad.mit.edu	37	16	74640625	74640625	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:74640625G>C	uc002fcy.3	-	1	418	c.368C>G	c.(367-369)ACC>AGC	p.T123S	GLG1_uc002fcx.2_Missense_Mutation_p.T123S|GLG1_uc002fcw.3_Missense_Mutation_p.T123S|GLG1_uc002fcz.3_5'UTR	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	123	Extracellular (Potential).|Cys-rich GLG1 1.					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						GCACACGCGGGTCACGTCCTC	0.711			NA											10	38					0	0	0.010729	0	0
WDR59	79726	broad.mit.edu	37	16	74943460	74943460	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:74943460C>T	uc002fdh.1	-	16	1683	c.1581G>A	c.(1579-1581)GGG>GGA	p.G527G	WDR59_uc002fdi.2_Silent_p.G527G|WDR59_uc002fdg.1_Silent_p.G119G	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	527										ovary(1)|breast(1)	2						CCTGGTACGACCCGTAAGCCG	0.567			NA											25	65					0	0	0.004656	0	0
CLEC3A	10143	broad.mit.edu	37	16	78064496	78064496	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:78064496G>T	uc002ffh.3	+	3	433	c.352G>T	c.(352-354)GGT>TGT	p.G118C		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	118	C-type lectin.				skeletal system development	extracellular region	sugar binding				0						CCAAGACTATGGTAAAAGGAG	0.483			NA											6	33					0.00116845	0.00129404	0.001168	1	0
PKD1L2	114780	broad.mit.edu	37	16	81161599	81161599	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:81161599G>T	uc002fgh.1	-	37	6116	c.6116C>A	c.(6115-6117)TCT>TAT	p.S2039Y	PKD1L2_uc002fgf.1_5'UTR|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	2039	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGAGGGCAAGAGCTTTCCTG	0.517			NA											5	11					0.00116845	0.00129404	0.001168	1	0
SDR42E1	93517	broad.mit.edu	37	16	82033530	82033530	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:82033530G>A	uc002fgu.2	-	3	496	c.368C>T	c.(367-369)ACT>ATT	p.T123I		NM_145168	NP_660151	Q8WUS8	D42E1_HUMAN	short chain dehydrogenase/reductase family 42E,	123					steroid biosynthetic process	integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding				0						GACATTGAAAGTGCTGGTGTA	0.488			NA											19	59					0	0	0.006122	0	0
ZCCHC14	23174	broad.mit.edu	37	16	87453466	87453466	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:87453466G>A	uc002fjz.1	-	6	584	c.557C>T	c.(556-558)CCT>CTT	p.P186L	ZCCHC14_uc002fka.1_RNA|ZCCHC14_uc002fkb.2_5'UTR	NM_015144	NP_055959	Q8WYQ9	ZCH14_HUMAN	zinc finger, CCHC domain containing 14	186					cell communication		nucleic acid binding|phosphatidylinositol binding|zinc ion binding			upper_aerodigestive_tract(1)|breast(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0285)		CACGTGAGAAGGTAATGAGGC	0.393			NA											6	46					0	0	0.001168	0	0
JPH3	57338	broad.mit.edu	37	16	87678336	87678337	+	Missense_Mutation	DNP	CG	CG	GA	rs112449440		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:87678336_87678337CG>GA	uc002fkd.2	+	2	1109_1110	c.855_856CG>GA	c.(853-858)ACCGAG>ACGAAG	p.E286K	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	286	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CCACCACCACCGAGACCTACGT	0.673			NA											15	45					0	0	0.004672	0	0
ZC3H18	124245	broad.mit.edu	37	16	88695191	88695191	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:88695191G>T	uc002fky.2	+	16	2695	c.2495G>T	c.(2494-2496)CGC>CTC	p.R832L	ZC3H18_uc010voz.1_Missense_Mutation_p.R856L|ZC3H18_uc010chw.2_RNA|ZC3H18_uc002fkz.2_Missense_Mutation_p.R102L	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18	832						nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		AGCAGGAAGCGCTATGAACCA	0.642	Ovarian(121;375 2276 20373 38669)		NA											18	131					6.94344e-10	1.04459e-09	0.006122	1	0
ANKRD11	29123	broad.mit.edu	37	16	89347829	89347829	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:89347829C>A	uc002fmx.1	-	9	5582	c.5121G>T	c.(5119-5121)ACG>ACT	p.T1707T	ANKRD11_uc002fmy.1_Silent_p.T1707T|ANKRD11_uc002fnc.1_Silent_p.T1707T|ANKRD11_uc002fna.1_5'Flank|ANKRD11_uc002fnb.1_Silent_p.T1664T	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	1707						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		ATAGCACCGACGTAGGGGTGG	0.672			NA											25	80					5.35356e-11	8.33429e-11	0.00278	1	0
CPNE7	27132	broad.mit.edu	37	16	89663001	89663001	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:89663001G>T	uc002fnp.2	+	17	2004	c.1874G>T	c.(1873-1875)GGA>GTA	p.G625V	CPNE7_uc002fnq.2_Missense_Mutation_p.G550V	NM_014427	NP_055242	Q9UBL6	CPNE7_HUMAN	copine 7 isoform b	625					lipid metabolic process		transporter activity				0		all_hematologic(23;0.0748)		all cancers(4;3.63e-08)|OV - Ovarian serous cystadenocarcinoma(4;1.7e-06)|BRCA - Breast invasive adenocarcinoma(80;0.0147)		GTCCCTGCCGGAGAGGCCAGC	0.667			NA											4	41					0.000602214	0.000676645	0.000602	1	0
MYO1C	4641	broad.mit.edu	37	17	1371772	1371772	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:1371772C>A	uc002fsp.2	-	26	2849	c.2629G>T	c.(2629-2631)GCT>TCT	p.A877S	MYO1C_uc002fsn.2_Missense_Mutation_p.A858S|MYO1C_uc002fso.2_Missense_Mutation_p.A842S|MYO1C_uc010vqj.1_Missense_Mutation_p.A842S	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	877					mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		ATCTCACTAGCCACGGCCTTC	0.582			NA											11	29					1.58986e-06	2.08065e-06	0.008291	1	0
ALOX12	239	broad.mit.edu	37	17	6909276	6909277	+	Missense_Mutation	DNP	CG	CG	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CG	CG	-	-	CG	CG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:6909276_6909277CG>AA	uc002gdx.3	+	10	1401_1402	c.1348_1349CG>AA	c.(1348-1350)CGG>AAG	p.R450K	uc002gdy.1_Intron	NM_000697	NP_000688	P18054	LOX12_HUMAN	arachidonate 12-lipoxygenase	450	Lipoxygenase.				anti-apoptosis|cellular component movement|fatty acid oxidation|leukotriene biosynthetic process|positive regulation of cell adhesion|positive regulation of cell growth|positive regulation of cell proliferation|superoxide anion generation	cytosol|sarcolemma	arachidonate 12-lipoxygenase activity|hepoxilin-epoxide hydrolase activity|iron ion binding|lipoxygenase activity|protein binding			central_nervous_system(1)	1						CCTGGCTGACCGGGGCCTGCTG	0.599			NA											7	47					0	0	0.004672	0	0
DLG4	1742	broad.mit.edu	37	17	7107104	7107105	+	Missense_Mutation	DNP	CC	CC	AA	rs12452520		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:7107104_7107105CC>AA	uc002get.3	-	7	1571_1572	c.370_371GG>TT	c.(370-372)GGT>TTT	p.G124F	DLG4_uc010vtm.1_RNA|DLG4_uc010vtn.1_Missense_Mutation_p.G21F|DLG4_uc010cly.2_Missense_Mutation_p.G78F|DLG4_uc010vto.1_Missense_Mutation_p.G121F|DLG4_uc002geu.2_Missense_Mutation_p.G78F	NM_001365	NP_001356	P78352	DLG4_HUMAN	post-synaptic density protein 95 isoform 1	81	PDZ 1.				axon guidance|learning|protein complex assembly|protein localization to synapse|signal transduction|synaptic transmission	cell junction|cortical cytoskeleton|endocytic vesicle membrane|neuron spine|postsynaptic density|postsynaptic membrane|synaptosome	protein binding|protein C-terminus binding			ovary(1)|breast(1)	2						GTCAGTGCCACCTGCGATGCTG	0.609			NA											8	13					0	0	0.004672	0	0
C17orf74	201243	broad.mit.edu	37	17	7329778	7329778	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:7329778A>G	uc002ggw.2	+	3	541	c.468A>G	c.(466-468)TCA>TCG	p.S156S	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	156						integral to membrane					0		Prostate(122;0.157)				ATAGCCACTCAGTCTTCCGTA	0.418			NA											22	52					0	0	0.010504	0	0
TP53	7157	broad.mit.edu	37	17	7577120	7577120	+	Missense_Mutation	SNP	C	C	A	rs28934576	by1000genomes	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:7577120C>A	uc002gim.2	-	8	1012	c.818G>T	c.(817-819)CGT>CTT	p.R273L	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.R273L|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.R141L|TP53_uc010cng.1_Missense_Mutation_p.R141L|TP53_uc002gii.1_Missense_Mutation_p.R141L|TP53_uc010cnh.1_Missense_Mutation_p.R273L|TP53_uc010cni.1_Missense_Mutation_p.R273L|TP53_uc002gij.2_Missense_Mutation_p.R273L	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	273	Interaction with DNA.||Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		R -> N (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> S (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> L (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> G (in LFS; germline mutation and in sporadic cancers; somatic mutation).|R -> Q (in sporadic cancers; somatic mutation).|R -> Y (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|R -> P (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.R273H(469)|p.R273C(394)|p.R273L(83)|p.R273P(24)|p.R273S(11)|p.R273G(9)|p.0?(7)|p.R273fs*72(3)|p.?(2)|p.R273fs*33(2)|p.R273_C275delRVC(1)|p.L265_K305del41(1)|p.S269fs*21(1)|p.R273R(1)|p.E258fs*71(1)|p.R273fs*71(1)|p.F270_D281del12(1)|p.E271_R273delEVR(1)|p.V272_K292del21(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCACAAACACGCACCTCAAA	0.542	Pancreas(47;798 1329 9957 10801)	R273H(NCIH1793_LUNG)|R273H(MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(PANC1_PANCREAS)|R273H(NCIH508_LARGE_INTESTINE)|R273H(NCIH1975_LUNG)|R273H(U251MG_CENTRAL_NERVOUS_SYSTEM)|R273H(SUPT1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(PF382_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(SW1783_CENTRAL_NERVOUS_SYSTEM)|R273H(NCIH2405_LUNG)|R273H(HEC59_ENDOMETRIUM)|R273H(NCIH1155_LUNG)|R273H(HT_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(EN_ENDOMETRIUM)|R273H(SNB19_CENTRAL_NERVOUS_SYSTEM)|R273H(MDAMB468_BREAST)|R273H(SUDHL1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|R273H(SW620_LARGE_INTESTINE)|R273H(SUIT2_PANCREAS)|R273H(SW480_LARGE_INTESTINE)|R273H(SKMEL30_SKIN)|R273H(OC314_OVARY)|R273H(HEC6_ENDOMETRIUM)|R273H(HT29_LARGE_INTESTINE)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumensyndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			18	7					3.52763e-06	4.5192e-06	0.00499	1	0
EFNB3	1949	broad.mit.edu	37	17	7612491	7612491	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:7612491C>A	uc002gis.2	+	5	1017	c.620C>A	c.(619-621)CCC>CAC	p.P207H		NM_001406	NP_001397	Q15768	EFNB3_HUMAN	ephrin-B3 precursor	207	Extracellular (Potential).				cell-cell signaling|interspecies interaction between organisms	integral to plasma membrane	ephrin receptor binding|transmembrane-ephrin receptor activity			ovary(1)	1		all_cancers(10;1.14e-06)|Prostate(122;0.081)				CCAGGTGACCCCACCAGCAAT	0.687			NA											13	23					0.00316338	0.00344727	0.003163	1	0
PER1	5187	broad.mit.edu	37	17	8049961	8049961	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:8049961C>A	uc002gkd.2	-	15	2096	c.1858G>T	c.(1858-1860)GCC>TCC	p.A620S	PER1_uc010vuq.1_RNA|PER1_uc010vur.1_Missense_Mutation_p.A604S	NM_002616	NP_002607	O15534	PER1_HUMAN	period 1	620	CSNK1E binding domain (By similarity).				circadian rhythm|entrainment of circadian clock|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	signal transducer activity			lung(2)|breast(2)|skin(2)|large_intestine(1)|ovary(1)|kidney(1)	9						CAGCTGGAGGCTTCTTTCCTC	0.642			NA	T	ETV6	AML|CMML			Other_conserved_DNA_damage_response_genes					9	26					3.09899e-07	4.18449e-07	0.004482	1	0
PIK3R5	23533	broad.mit.edu	37	17	8785176	8785176	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:8785176C>T	uc002glt.2	-	16	2295	c.2228G>A	c.(2227-2229)CGC>CAC	p.R743H	PIK3R5_uc010vuz.1_Missense_Mutation_p.R743H|PIK3R5_uc002glu.3_Missense_Mutation_p.R357H	NM_014308	NP_055123	Q8WYR1	PI3R5_HUMAN	phosphoinositide-3-kinase, regulatory subunit 5	743	Interaction with G beta gamma proteins (By similarity).				platelet activation	cytosol|membrane|nucleus				breast(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5						GTTGCTCCAGCGACTTCGTCC	0.612	NSCLC(18;589 615 7696 20311 50332)		NA											3	10					0	0	0.004672	0	0
MYH13	8735	broad.mit.edu	37	17	10250078	10250078	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:10250078A>T	uc002gmk.1	-	13	1272	c.1182T>A	c.(1180-1182)TCT>TCA	p.S394S	MYH13_uc010vvf.1_Silent_p.S69S	NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	394	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCATTTCTGCAGAATTCAGTC	0.468			NA											11	14					0	0	0.008291	0	0
MYH8	4626	broad.mit.edu	37	17	10309664	10309664	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:10309664C>G	uc002gmm.2	-	20	2317	c.2222G>C	c.(2221-2223)AGC>ACC	p.S741T	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	741	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						AGCCTTCTTGCTGTCAATGAA	0.353			NA							Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				12	10					0	0	0.001855	0	0
MYH1	4619	broad.mit.edu	37	17	10404639	10404639	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:10404639G>T	uc002gmo.2	-	27	3620	c.3526C>A	c.(3526-3528)CAG>AAG	p.Q1176K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1176	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CGCATTTTCTGGAACTCAGCC	0.612			NA											45	46					6.61955e-31	1.27299e-30	0.00361	1	0
MYH2	4620	broad.mit.edu	37	17	10426462	10426462	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:10426462A>T	uc010coi.2	-	39	5746	c.5618T>A	c.(5617-5619)TTG>TAG	p.L1873*	uc002gml.1_Intron|MYH2_uc002gmp.3_Nonsense_Mutation_p.L1873*|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1873	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTTATCTACCAAATCTTGAAG	0.323			NA											8	20					0	0	0.006214	0	0
MYH3	4621	broad.mit.edu	37	17	10533637	10533637	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:10533637C>A	uc002gmq.1	-	36	5502	c.5425G>T	c.(5425-5427)GGG>TGG	p.G1809W		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1809	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TGCTTCTTCCCGCCCTTCAGC	0.612			NA											22	64					1.10923e-09	1.65702e-09	0.00278	1	0
DNAH9	1770	broad.mit.edu	37	17	11687751	11687751	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:11687751C>T	uc002gne.2	+	41	8024	c.7956C>T	c.(7954-7956)ATC>ATT	p.I2652I	DNAH9_uc010coo.2_Silent_p.I1946I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2652	AAA 3 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CCCCACTGATCGATCTGGCCC	0.512			NA											29	78					0	0	0.00632	0	0
DNAH9	1770	broad.mit.edu	37	17	11687858	11687858	+	Splice_Site	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:11687858T>C	uc002gne.2	+	41	8129	c.8061_splice	c.e41+2	p.Q2687_splice	DNAH9_uc010coo.2_Splice_Site_p.Q1981_splice	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2						cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ATTTTCCAGGTGAGTTCATCG	0.473			NA											20	66					0	0	0.00278	0	0
NCOR1	9611	broad.mit.edu	37	17	15964934	15964934	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:15964934G>A	uc002gpo.2	-	37	5902	c.5662C>T	c.(5662-5664)CCA>TCA	p.P1888S	NCOR1_uc002gpn.2_Intron|NCOR1_uc002gpm.2_Missense_Mutation_p.P408S|NCOR1_uc010vwb.1_Missense_Mutation_p.P472S|NCOR1_uc010coy.2_Missense_Mutation_p.P796S|NCOR1_uc010vwc.1_Missense_Mutation_p.P698S	NM_006311	NP_006302	O75376	NCOR1_HUMAN	nuclear receptor co-repressor 1	1888	Interaction with C1D (By similarity).				cellular lipid metabolic process|chromatin modification|negative regulation of JNK cascade|regulation of glycolysis by negative regulation of transcription from an RNA polymerase II promoter|regulation of lipid transport by negative regulation of transcription from an RNA polymerase II promoter|spindle assembly|transcription from RNA polymerase II promoter	nuclear chromatin|spindle microtubule|transcriptional repressor complex	histone deacetylase binding|transcription corepressor activity|transcription regulatory region DNA binding			upper_aerodigestive_tract(2)|ovary(1)|central_nervous_system(1)|kidney(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.101)		TTGCCACTTGGAAAGGCTGAA	0.478			NA											24	64					0	0	0.00278	0	0
SLC47A1	55244	broad.mit.edu	37	17	19470125	19470125	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:19470125C>T	uc002gvy.1	+	13	1215	c.1129C>T	c.(1129-1131)CAG>TAG	p.Q377*	SLC47A1_uc002gvx.2_Nonsense_Mutation_p.Q377*|SLC47A1_uc010vyz.1_Nonsense_Mutation_p.Q354*|SLC47A1_uc010cqp.1_Intron|SLC47A1_uc010cqq.1_Nonsense_Mutation_p.Q182*|SLC47A1_uc010vza.1_Nonsense_Mutation_p.Q89*|SLC47A1_uc010vzb.1_Nonsense_Mutation_p.Q111*|SLC47A1_uc010vzc.1_Nonsense_Mutation_p.Q49*	NM_018242	NP_060712	Q96FL8	S47A1_HUMAN	solute carrier family 47, member 1	377	Helical; (Potential).					integral to membrane|plasma membrane	drug:hydrogen antiporter activity				0	all_cancers(12;2.49e-05)|all_epithelial(12;0.00263)|Hepatocellular(7;0.00345)					TCTGGTGGCTCAGGTGGTTCC	0.378			NA											34	25					0	0	0.003755	0	0
LGALS9B	284194	broad.mit.edu	37	17	20354854	20354854	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:20354854C>A	uc002gxa.1	-	10	929	c.864G>T	c.(862-864)TGG>TGT	p.W288C	LGALS9B_uc002gwz.1_Missense_Mutation_p.W287C|LGALS9B_uc010vzh.1_Missense_Mutation_p.W200C	NM_001042685	NP_001036150	Q3B8N2	LEG9B_HUMAN	galectin-9 like	288	Galectin 2.|Beta-galactoside binding 2 (By similarity).						sugar binding			skin(1)	1						CCTCAGACCCCCAAGAGTTGT	0.577			NA											11	32					7.93312e-07	1.05115e-06	0.00245	1	0
Unknown	0	broad.mit.edu	37	17	21731178	21731178	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:21731178G>T	uc002gyy.3	+	2	605	c.480G>T	c.(478-480)CTG>CTT	p.L160L						SubName: Full=cDNA FLJ51326, highly similar to Homo sapiens ubiquitin B (UBB), mRNA;												NA						TGAAGACCCTGACCGGCAAGA	0.532			NA											15	49					3.99206e-14	6.7865e-14	0.007413	1	0
PIGS	94005	broad.mit.edu	37	17	26883216	26883216	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:26883216C>T	uc002hbo.2	-	10	1522	c.1149G>A	c.(1147-1149)GTG>GTA	p.V383V	PIGS_uc002hbn.2_Silent_p.V375V|PIGS_uc010wap.1_Silent_p.V322V	NM_033198	NP_149975	Q96S52	PIGS_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	383	Lumenal (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation	GPI-anchor transamidase complex	protein binding			breast(2)|urinary_tract(1)|kidney(1)	4	Lung NSC(42;0.00431)					CCATCACTCGCACCATGTCCA	0.507			NA											13	85					0	0	0.003163	0	0
CRYBA1	1411	broad.mit.edu	37	17	27579114	27579114	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:27579114G>T	uc002hdw.2	+	4	255	c.248G>T	c.(247-249)GGG>GTG	p.G83V		NM_005208	NP_005199	P05813	CRBA1_HUMAN	crystallin, beta A3	83	Beta/gamma crystallin 'Greek key' 2.				visual perception	soluble fraction	structural constituent of eye lens				0			BRCA - Breast invasive adenocarcinoma(11;3.3e-05)|Colorectal(6;0.0178)|COAD - Colon adenocarcinoma(6;0.0551)			AGCTTCTGTGGGCAACAGTTT	0.507			NA									OREG0024293	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	14	82					6.31663e-08	8.85996e-08	0.003163	1	0
ACCN1	40	broad.mit.edu	37	17	31352947	31352947	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:31352947G>A	uc002hhu.2	-	5	1313	c.1039C>T	c.(1039-1041)CTA>TTA	p.L347L	ACCN1_uc002hht.2_Silent_p.L398L	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	347	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	TACTGACCTAGGGCAGGCTCT	0.527			NA											15	33					0	0	0.00245	0	0
CCL13	6357	broad.mit.edu	37	17	32685094	32685094	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:32685094T>A	uc002hic.2	+	3	316	c.241T>A	c.(241-243)TGG>AGG	p.W81R		NM_005408	NP_005399	Q99616	CCL13_HUMAN	small inducible cytokine A13 precursor	81					cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|immune response|inflammatory response	extracellular space	chemokine activity|signal transducer activity				0		Ovarian(249;0.0443)|Breast(31;0.151)				AAAGGAGAAGTGGGTCCAGAA	0.488			NA											11	43					0	0	0.010729	0	0
UNC45B	146862	broad.mit.edu	37	17	33497163	33497163	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:33497163G>T	uc002hja.2	+	12	1675	c.1578G>T	c.(1576-1578)CGG>CGT	p.R526R	UNC45B_uc002hjb.2_Silent_p.R526R|UNC45B_uc002hjc.2_Silent_p.R526R|UNC45B_uc010cto.2_Intron	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	526					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TAGACACTCGGACCCGACGCT	0.607			NA											22	89					6.44725e-10	9.7166e-10	0.002299	1	0
RDM1	201299	broad.mit.edu	37	17	34251770	34251770	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:34251770C>A	uc002hkh.2	-	4	455	c.406G>T	c.(406-408)GAG>TAG	p.E136*	RDM1_uc010cty.2_Intron|RDM1_uc010ctz.2_Intron|RDM1_uc010cua.2_Nonsense_Mutation_p.E113*|RDM1_uc002hkg.3_Nonsense_Mutation_p.E113*|RDM1_uc010cub.2_Intron|RDM1_uc010cud.2_Nonsense_Mutation_p.E136*|RDM1_uc010cuf.2_Intron|RDM1_uc010cue.2_Intron|RDM1_uc010cug.2_Intron|RDM1_uc010cuc.2_Intron|RDM1_uc010wco.1_Intron|RDM1_uc010wcp.1_Nonsense_Mutation_p.E113*|RDM1_uc002hki.2_Nonsense_Mutation_p.E136*	NM_145654	NP_663629	Q8NG50	RDM1_HUMAN	RAD52 motif 1 isoform 1	136					DNA recombination|DNA repair	Cajal body|cytoplasm|nucleolus|PML body	DNA binding|nucleotide binding|RNA binding			ovary(1)	1		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TCAGAAAGCTCCTGAAGCTGT	0.368			NA						Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					33	42					1.26612e-14	2.19185e-14	0.003271	1	0
MRM1	79922	broad.mit.edu	37	17	34958299	34958299	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:34958299C>A	uc002hne.2	+	1	275	c.60C>A	c.(58-60)TTC>TTA	p.F20L	MRM1_uc002hnf.2_5'Flank	NM_024864	NP_079140	Q6IN84	MRM1_HUMAN	mitochondrial rRNA methyltransferase 1 homolog	20					RNA processing	mitochondrion	RNA binding|RNA methyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0184)		CCCGTCATTTCTCCCATGCAG	0.677			NA											13	55					0.00010058	0.000118575	0.001368	1	0
SRCIN1	80725	broad.mit.edu	37	17	36708782	36708782	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:36708782T>A	uc002hqd.2	-	13	2606	c.2381A>T	c.(2380-2382)GAG>GTG	p.E794V	SRCIN1_uc002hqf.1_Missense_Mutation_p.E666V|SRCIN1_uc002hqe.2_Missense_Mutation_p.E648V|SRCIN1_uc002hqg.2_Missense_Mutation_p.E100V	NM_025248	NP_079524	Q9C0H9	SRCN1_HUMAN	SNAP25-interacting protein	666					exocytosis|negative regulation of protein tyrosine kinase activity|positive regulation of protein tyrosine kinase activity|regulation of cell migration|regulation of dendritic spine morphogenesis|substrate adhesion-dependent cell spreading	actin cytoskeleton|axon|cell junction|cytoplasm|dendrite|postsynaptic density|postsynaptic membrane	protein kinase binding				0						CGCCTCCACCTCCACGCGCAG	0.672			NA											3	14					0	0	0.004672	0	0
CWC25	54883	broad.mit.edu	37	17	36963160	36963160	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:36963160T>A	uc002hqu.2	-	7	913	c.760A>T	c.(760-762)ATG>TTG	p.M254L	CWC25_uc010wdv.1_Missense_Mutation_p.M191L|CWC25_uc010wdw.1_RNA|CWC25_uc010wdx.1_RNA	NM_017748	NP_060218	Q9NXE8	CWC25_HUMAN	coiled-coil domain containing 49	254											0						TGGTTCTTCATCCCATGCCCT	0.537			NA											26	42					0	0	0.005443	0	0
CASC3	22794	broad.mit.edu	37	17	38319962	38319962	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:38319962G>T	uc010cwt.1	+	7	1309	c.1014G>T	c.(1012-1014)CGG>CGT	p.R338R	CASC3_uc010cws.1_Silent_p.R338R|CASC3_uc002hue.2_Silent_p.R338R	NM_007359	NP_031385	O15234	CASC3_HUMAN	metastatic lymph node 51	338					mRNA processing|mRNA transport|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translation|response to stress|RNA splicing	exon-exon junction complex|nuclear speck|perinuclear region of cytoplasm	identical protein binding|RNA binding|ubiquitin protein ligase binding			ovary(1)	1						ATGGTGGCCGGTCTGGTGAGA	0.552			NA											35	190					4.3181e-19	7.8933e-19	0.002836	1	0
KRTAP1-5	83895	broad.mit.edu	37	17	39183248	39183248	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:39183248C>A	uc002hvu.2	-	1	207	c.160G>T	c.(160-162)GGG>TGG	p.G54W		NM_031957	NP_114163	Q9BYS1	KRA15_HUMAN	keratin associated protein 1.5	54	15 X 5 AA repeats of C-C-[QEPVRC]- [TPIVLE]-[SRHVP].					keratin filament					0		Breast(137;0.00043)	STAD - Stomach adenocarcinoma(17;0.000371)			CTGCAGGTCCCACTGGTTGAG	0.627			NA											11	80					6.40141e-05	7.65288e-05	0.010729	1	0
KRTAP1-3	81850	broad.mit.edu	37	17	39190682	39190682	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:39190682G>T	uc002hvv.2	-	1	426	c.392C>A	c.(391-393)CCA>CAA	p.P131Q		NM_030966	NP_112228	Q8IUG1	KRA13_HUMAN	keratin associated protein 1-3	141						extracellular region|keratin filament	structural constituent of epidermis				0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			GCAGCAGGTTGGGGGTGTGCA	0.667			NA											4	59					0.00909568	0.00964006	0.009096	1	0
KLHL10	317719	broad.mit.edu	37	17	40001920	40001920	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:40001920G>A	uc010cxr.2	+	3	1369	c.1227G>A	c.(1225-1227)GAG>GAA	p.E409E	KLHL10_uc010wfv.1_Silent_p.E403E|KLHL10_uc010wfw.1_Silent_p.E321E	NM_152467	NP_689680	Q6JEL2	KLH10_HUMAN	kelch-like 10	409	Kelch 3.					cytoplasm				ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		Breast(137;0.000162)				ATGAGCCAGAGACCAATCAAT	0.502			NA											16	63					0	0	0.004007	0	0
KLHL11	55175	broad.mit.edu	37	17	40010890	40010890	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:40010890T>C	uc002hyf.1	-	2	1235	c.1229A>G	c.(1228-1230)TAT>TGT	p.Y410C		NM_018143	NP_060613	Q9NVR0	KLH11_HUMAN	kelch-like 11 precursor	410	Kelch 2.					extracellular region					0		Breast(137;0.00156)				TCCAGCAACATACACGTAGGA	0.408			NA											22	100					0	0	0.002299	0	0
NKIRAS2	28511	broad.mit.edu	37	17	40174455	40174455	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:40174455G>T	uc002hyq.2	+	3	198	c.133G>T	c.(133-135)GGC>TGC	p.G45C	NKIRAS2_uc010wgd.1_Missense_Mutation_p.G45C|NKIRAS2_uc002hyr.2_Missense_Mutation_p.G45C|NKIRAS2_uc002hys.2_Missense_Mutation_p.G45C|NKIRAS2_uc010wge.1_Missense_Mutation_p.G45C|NKIRAS2_uc002hyt.2_Missense_Mutation_p.G45C	NM_001001349	NP_001001349	Q9NYR9	KBRS2_HUMAN	NFKB inhibitor interacting Ras-like 2 isoform a	45	Small GTPase-like.				I-kappaB kinase/NF-kappaB cascade|small GTPase mediated signal transduction	cytoplasm	GTP binding|GTPase activity			ovary(1)	1		all_cancers(22;1.1e-05)|Breast(137;0.000143)|all_epithelial(22;0.000319)				CATCTACGTGGGCTCCATTGA	0.552			NA											14	39					2.31682e-05	2.85199e-05	0.003163	1	0
KCNH4	23415	broad.mit.edu	37	17	40315736	40315736	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:40315736G>A	uc002hzb.2	-	13	2698	c.2365C>T	c.(2365-2367)CAG>TAG	p.Q789*		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	789	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		CTGTGGCCCTGGCCAGCCAGG	0.662	NSCLC(117;707 1703 2300 21308 31858)		NA											5	13					0	0	0.000602	0	0
SOST	50964	broad.mit.edu	37	17	41835995	41835995	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:41835995C>T	uc002iec.1	-	1	162	c.115G>A	c.(115-117)GAG>AAG	p.E39K		NM_025237	NP_079513	Q9BQB4	SOST_HUMAN	sclerostin precursor	39					negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of ossification|negative regulation of protein complex assembly|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway		heparin binding|protein binding				0		Breast(137;0.00725)		UCEC - Uterine corpus endometrioid carcinoma (308;0.177)|BRCA - Breast invasive adenocarcinoma(366;0.0741)		TCTCCGAGCTCGGGGATGATT	0.632			NA											6	77					0	0	0.00308	0	0
PPY	5539	broad.mit.edu	37	17	42018976	42018976	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:42018976C>T	uc002iep.2	-	2	92	c.47G>A	c.(46-48)TGC>TAC	p.C16Y		NM_002722	NP_002713	P01298	PAHO_HUMAN	pancreatic polypeptide preproprotein	16					digestion|protein secretion	extracellular region	hormone activity				0		Breast(137;0.00314)|Prostate(33;0.0724)		BRCA - Breast invasive adenocarcinoma(366;0.113)		CAGAGCCACGCAGGTGGACAG	0.642			NA											9	39					0	0	0.004482	0	0
ITGA2B	3674	broad.mit.edu	37	17	42451767	42451767	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:42451767C>A	uc002igt.1	-	29	3047	c.3015G>T	c.(3013-3015)CTG>CTT	p.L1005L	ITGA2B_uc002igu.1_3'UTR	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	1005	Helical; (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	GCAGGCCACCCAGCACACCCA	0.647			NA											26	88					3.08376e-08	4.38327e-08	0.00333	1	0
ITGA2B	3674	broad.mit.edu	37	17	42457493	42457494	+	Missense_Mutation	DNP	CC	CC	AA	rs139770734		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:42457493_42457494CC>AA	uc002igt.1	-	17	1660_1661	c.1628_1629GG>TT	c.(1627-1629)CGG>CTT	p.R543L	ITGA2B_uc002igu.1_Missense_Mutation_p.R24L	NM_000419	NP_000410	P08514	ITA2B_HUMAN	integrin alpha 2b preproprotein	543	Extracellular (Potential).				axon guidance|integrin-mediated signaling pathway|platelet activation|platelet degranulation	integrin complex|platelet alpha granule membrane	identical protein binding|receptor activity			ovary(2)|lung(1)	3		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.191)	Tirofiban(DB00775)	GGGGCTTCTGCCGGTCCAGCTG	0.683			NA											14	31					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	17	43625394	43625394	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:43625394C>A	uc002ijh.2	-	1	731	c.610G>T	c.(610-612)GAG>TAG	p.E204*	uc010wjv.1_Intron					Homo sapiens cDNA FLJ45049 fis, clone BRAWH3022347.												NA						GTAGTCTTCTCCAGGGCTGTA	0.532			NA											35	284					1.06647e-15	1.86523e-15	0.003755	1	0
ITGB3	3690	broad.mit.edu	37	17	45361879	45361879	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:45361879G>C	uc002ilj.2	+	4	452	c.432G>C	c.(430-432)ATG>ATC	p.M144I	ITGB3_uc002ili.1_Missense_Mutation_p.M144I|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	144	VWFA.|Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	ACTACTTGATGGACCTGTCTT	0.488			NA											17	63					0	0	0.004007	0	0
NPEPPS	9520	broad.mit.edu	37	17	45695735	45695735	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:45695735T>C	uc002ilr.3	+	20	2538	c.2315T>C	c.(2314-2316)ATG>ACG	p.M772T	NPEPPS_uc010wkt.1_Missense_Mutation_p.M768T|NPEPPS_uc010wku.1_Missense_Mutation_p.M736T|NPEPPS_uc010wkv.1_Missense_Mutation_p.M326T|NPEPPS_uc002ils.1_Missense_Mutation_p.M205T	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	772					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						CAAGCAGATATGCAAGAAGAG	0.398			NA											7	39					0	0	0.00308	0	0
HOXB1	3211	broad.mit.edu	37	17	46606916	46606917	+	Missense_Mutation	DNP	GT	GT	AG			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GT	GT	-	-	GT	GT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:46606916_46606917GT>AG	uc002ink.1	-	2	904_905	c.898_899AC>CT	c.(898-900)ACC>CTC	p.T300L		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	300						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						AGTTCAGGAGGTGACAGAGCTG	0.663			NA											10	38					0	0	0.004672	0	0
HOXB1	3211	broad.mit.edu	37	17	46608020	46608020	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:46608020C>A	uc002ink.1	-	1	253	c.247G>T	c.(247-249)GGG>TGG	p.G83W		NM_002144	NP_002135	P14653	HXB1_HUMAN	homeobox B1	83						nucleus	protein domain specific binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GGAGCATACCCCGAGGGCGCG	0.652			NA											34	74					7.11191e-15	1.23749e-14	0.002836	1	0
ITGA3	3675	broad.mit.edu	37	17	48148233	48148233	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:48148233G>T	uc010dbl.2	+	5	1154	c.690G>T	c.(688-690)AAG>AAT	p.K230N	ITGA3_uc010dbm.2_Missense_Mutation_p.K230N	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	230	FG-GAP 3.|Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						TTCAGCGCAAGGAGTGGGACT	0.493			NA											42	278					6.4771e-29	1.23999e-28	0.010771	1	0
WFIKKN2	124857	broad.mit.edu	37	17	48913470	48913470	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:48913470G>T	uc002isv.3	+	1	866	c.172G>T	c.(172-174)GCA>TCA	p.A58S	WFIKKN2_uc010dbu.2_Intron	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	58	WAP.					extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			CTGGGTGGACGCACAGAGCAC	0.652			NA											12	11					5.50884e-06	6.94735e-06	0.001368	1	0
DGKE	8526	broad.mit.edu	37	17	54912249	54912249	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:54912249G>T	uc002iur.2	+	2	273	c.93G>T	c.(91-93)CTG>CTT	p.L31L	DGKE_uc002ius.1_Silent_p.L31L|C17orf67_uc002iuq.2_5'Flank	NM_003647	NP_003638	P52429	DGKE_HUMAN	diacylglycerol kinase epsilon	31	Helical; (Potential).				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|phospholipid biosynthetic process|platelet activation	integral to membrane|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding|protein binding			breast(2)	2	Breast(9;3.59e-07)					GCTCGGTCCTGCTGCCGGTGT	0.677			NA											32	177					4.74835e-14	8.05609e-14	0.010818	1	0
OR4D1	26689	broad.mit.edu	37	17	56233080	56233080	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:56233080G>T	uc010wno.1	+	1	566	c.566G>T	c.(565-567)TGC>TTC	p.C189F	MSX2P1_uc002ivn.2_5'Flank	NM_012374	NP_036506	Q15615	OR4D1_HUMAN	olfactory receptor, family 4, subfamily D,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AGACTTGCCTGCACTGATACC	0.488			NA											21	98					8.10497e-08	1.13217e-07	0.010504	1	0
OR4D2	124538	broad.mit.edu	37	17	56247175	56247175	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:56247175C>A	uc010wnp.1	+	1	159	c.159C>A	c.(157-159)TCC>TCA	p.S53S		NM_001004707	NP_001004707	P58180	OR4D2_HUMAN	olfactory receptor, family 4, subfamily D,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCTCTGATTCCCAGCTCCACA	0.488			NA											22	151					1.66031e-10	2.55432e-10	0.003954	1	0
LPO	4025	broad.mit.edu	37	17	56329618	56329618	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:56329618A>G	uc002ivt.2	+	8	1172	c.856A>G	c.(856-858)ACT>GCT	p.T286A	LPO_uc010wns.1_Missense_Mutation_p.T227A|LPO_uc010dcp.2_Missense_Mutation_p.T203A|LPO_uc010dcq.2_Intron|LPO_uc010dcr.2_5'UTR	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	286					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						CGTCTGCCCCACTCCACCCTA	0.597			NA											22	37					0	0	0.012319	0	0
HSF5	124535	broad.mit.edu	37	17	56544284	56544284	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:56544284G>T	uc002iwi.1	-	3	1106	c.982C>A	c.(982-984)CCC>ACC	p.P328T		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5	328						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GAGGCATTGGGAGTGACACAA	0.443			NA											20	69					7.87624e-14	1.3323e-13	0.00278	1	0
FTSJ3	117246	broad.mit.edu	37	17	61898278	61898278	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:61898278G>A	uc002jbz.2	-	17	2071	c.1993C>T	c.(1993-1995)CCC>TCC	p.P665S	FTSJ3_uc002jca.2_Missense_Mutation_p.P665S	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	665					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						AGGCCTTCGGGGTCCAGTATC	0.473			NA											27	55					0	0	0.009535	0	0
SCN4A	6329	broad.mit.edu	37	17	62018185	62018185	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:62018185G>C	uc002jds.1	-	24	5534	c.5457C>G	c.(5455-5457)CCC>CCG	p.P1819P		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	1819					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GGGGAGGGGCGGGAGGCCAGG	0.672			NA											14	51					0	0	0.00245	0	0
DDX5	1655	broad.mit.edu	37	17	62496295	62496295	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:62496295G>C	uc002jek.2	-	13	1838	c.1591C>G	c.(1591-1593)CAG>GAG	p.Q531E	DDX5_uc010deh.2_Missense_Mutation_p.Q531E|DDX5_uc002jej.2_Missense_Mutation_p.Q426E|DDX5_uc010wqa.1_Missense_Mutation_p.Q452E	NM_004396	NP_004387	P17844	DDX5_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	531					cell growth|regulation of alternative nuclear mRNA splicing, via spliceosome	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA helicase activity|transcription cofactor activity			ovary(2)|lung(1)	3	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;8.6e-12)			ACACCATTCTGAGTTTTTGCC	0.418	NSCLC(22;406 813 4871 19580 40307)		NA	T	ETV4	prostate								30	126					0	0	0.002836	0	0
CCDC46	201134	broad.mit.edu	37	17	63847968	63847968	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:63847968T>A	uc002jfl.2	-	21	2567	c.2348A>T	c.(2347-2349)GAG>GTG	p.E783V	CCDC46_uc010deo.2_Missense_Mutation_p.E525V|CCDC46_uc002jfm.2_Missense_Mutation_p.E783V|CCDC46_uc010dep.2_Missense_Mutation_p.E741V	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	783	Potential.					centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			CTTTTTCAGCTCTATTTTCAT	0.378			NA											26	111					0	0	0.00632	0	0
CCDC46	201134	broad.mit.edu	37	17	64125897	64125897	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:64125897G>A	uc002jfl.2	-	6	828	c.609C>T	c.(607-609)GAC>GAT	p.D203D	CCDC46_uc002jfm.2_Silent_p.D203D|CCDC46_uc010dep.2_Silent_p.D203D	NM_145036	NP_659473	Q8N8E3	CE112_HUMAN	coiled-coil domain containing 46 isoform a	203						centrosome					0			BRCA - Breast invasive adenocarcinoma(6;1.53e-06)			GAGCTTCAATGTCACTATCAT	0.229			NA											9	53					0	0	0.004482	0	0
WIPI1	55062	broad.mit.edu	37	17	66440643	66440643	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:66440643T>G	uc010dey.2	-	4	512	c.421A>C	c.(421-423)AAC>CAC	p.N141H	WIPI1_uc002jhd.3_RNA|WIPI1_uc010wqo.1_Missense_Mutation_p.N59H|WIPI1_uc002jhe.3_RNA	NM_017983	NP_060453	Q5MNZ9	WIPI1_HUMAN	WD repeat domain, phosphoinositide interacting	141					macroautophagy|vesicle targeting, trans-Golgi to endosome	autophagic vacuole membrane|clathrin-coated vesicle|cytosol|endosome membrane|PAS complex|pre-autophagosomal structure membrane|trans-Golgi network	androgen receptor binding|estrogen receptor binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding				0						CCTGTTGGGTTTGCAGGAATA	0.423			NA											31	44					0	0	0.008361	0	0
ABCA8	10351	broad.mit.edu	37	17	66925834	66925834	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:66925834C>T	uc002jhp.2	-	7	986	c.807G>A	c.(805-807)TGG>TGA	p.W269*	ABCA8_uc002jhq.2_Nonsense_Mutation_p.W269*|ABCA8_uc010wqq.1_Nonsense_Mutation_p.W269*|ABCA8_uc010wqr.1_Nonsense_Mutation_p.W208*|ABCA8_uc002jhr.2_Nonsense_Mutation_p.W269*	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	269	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AGAGCAAACCCCAGGAGAGCC	0.348			NA											7	13					0	0	0.001984	0	0
MAP2K6	5608	broad.mit.edu	37	17	67501928	67501928	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:67501928G>T	uc002jij.2	+	2	312	c.24G>T	c.(22-24)AAG>AAT	p.K8N	MAP2K6_uc002jii.2_Missense_Mutation_p.K8N|MAP2K6_uc002jik.2_Missense_Mutation_p.K38N	NM_002758	NP_002749	P52564	MP2K6_HUMAN	mitogen-activated protein kinase kinase 6	8					activation of MAPK activity|cell cycle arrest|DNA damage induced protein phosphorylation|innate immune response|muscle cell differentiation|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of muscle cell differentiation|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|pancreas(1)	5	Breast(10;6.05e-10)					TAGGCAAGAAGCGAAACCCTG	0.433			NA											34	64					5.43694e-19	9.90653e-19	0.005524	1	0
KCNJ2	3759	broad.mit.edu	37	17	68172348	68172348	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:68172348A>T	uc010dfg.2	+	2	1569	c.1168A>T	c.(1168-1170)AGT>TGT	p.S390C	KCNJ2_uc002jir.2_Missense_Mutation_p.S390C	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	390	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					GGAAGACGACAGTGAAAATGG	0.463			NA											23	89					0	0	0.002299	0	0
GPR142	350383	broad.mit.edu	37	17	72367926	72367926	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:72367926C>A	uc010wqy.1	+	4	576	c.576C>A	c.(574-576)TCC>TCA	p.S192S	GPR142_uc010wqx.1_Silent_p.S104S	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	192	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGAGGCCCTCCTACTACTACC	0.652			NA											10	18					3.07112e-06	3.94924e-06	0.010729	1	0
SFRS2	6427	broad.mit.edu	37	17	74732406	74732406	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:74732406C>T	uc002jsv.2	-	2	673	c.503G>A	c.(502-504)AGG>AAG	p.R168K	SFRS2_uc002jsw.1_RNA|SFRS2_uc002jsx.1_RNA|SFRS2_uc002jsy.3_Missense_Mutation_p.R168K|SFRS2_uc010wtg.1_Missense_Mutation_p.R156K|MFSD11_uc002jsz.1_RNA|MFSD11_uc002jta.2_5'UTR|MFSD11_uc002jtb.2_5'Flank|MFSD11_uc010dha.2_5'Flank|MFSD11_uc002jtc.2_5'Flank|MFSD11_uc002jtd.3_5'Flank|MFSD11_uc010dhb.2_5'Flank|MFSD11_uc002jte.2_5'Flank	NM_003016	NP_003007	Q01130	SRSF2_HUMAN	splicing factor, arginine/serine-rich 2	168	Arg/Ser-rich (RS domain).				mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	nuclear speck	nucleotide binding|protein binding|RNA binding|transcription corepressor activity				0						GGACTTGGACCTTCGTGCGGA	0.617			NA											21	104					0	0	0.002299	0	0
SEPT9	10801	broad.mit.edu	37	17	75303255	75303255	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:75303255A>T	uc002jts.3	+	2	178	c.52A>T	c.(52-54)AGG>TGG	p.R18W	SEPT9_uc010wtk.1_Intron|SEPT9_uc002jtt.3_5'UTR	NM_001113491	NP_001106963	Q9UHD8	SEPT9_HUMAN	septin 9 isoform a	18					cell cycle|cell division|protein heterooligomerization	microtubule|perinuclear region of cytoplasm|stress fiber	GTP binding|GTPase activity|protein binding|protein binding			breast(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(99;0.153)			CCGGCTCCGGAGGCTTGGTGA	0.627			NA											42	84					0	0	0.013114	0	0
TMC8	147138	broad.mit.edu	37	17	76135285	76135285	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:76135285C>T	uc002jup.2	+	15	2248	c.1866C>T	c.(1864-1866)GCC>GCT	p.A622A	TMC8_uc002juq.2_Silent_p.A399A|TMC8_uc002jur.1_3'UTR	NM_152468	NP_689681	Q8IU68	TMC8_HUMAN	transmembrane channel-like 8	622	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.192)			AGGCCAATGCCAGGGCCATCC	0.647			NA							Epidermodysplasia_Verruciformis_Familial_Clustering_of				7	79					0	0	0.004482	0	0
RNF213	57674	broad.mit.edu	37	17	78316967	78316967	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:78316967A>G	uc002jyh.1	+	2	467	c.244A>G	c.(244-246)ATG>GTG	p.M82V		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			GCACGACAAAATGAAGATGCA	0.363			NA											9	37					0	0	0.001855	0	0
CHMP6	79643	broad.mit.edu	37	17	78968447	78968447	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:78968447G>T	uc002jyw.3	+	2	208	c.130G>T	c.(130-132)GAG>TAG	p.E44*		NM_024591	NP_078867	Q96FZ7	CHMP6_HUMAN	chromatin modifying protein 6	44	Potential.				cellular membrane organization|endosome transport|protein transport	cytosol|endomembrane system|late endosome membrane	protein N-terminus binding			ovary(1)	1	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0175)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GCTGGAGCGCGAGCGCGCCCT	0.716			NA											7	8					2.7689e-08	3.94231e-08	0.001984	1	0
C17orf70	80233	broad.mit.edu	37	17	79516286	79516286	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:79516286C>T	uc002kaq.2	-	4	1404	c.1349G>A	c.(1348-1350)AGT>AAT	p.S450N	C17orf70_uc002kao.1_5'Flank|C17orf70_uc010wuq.1_RNA|C17orf70_uc002kap.2_Missense_Mutation_p.S299N	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit	450					DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			CTGACCTGCACTCTCTGTGGT	0.607			NA											10	46					0	0	0.006214	0	0
UTS2R	2837	broad.mit.edu	37	17	80332573	80332573	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:80332573G>T	uc010wvl.1	+	1	373	c.373G>T	c.(373-375)GTG>TTG	p.V125L		NM_018949	NP_061822	Q9UKP6	UR2R_HUMAN	urotensin 2 receptor	125	Helical; Name=3; (Potential).					integral to membrane|plasma membrane				breast(1)	1	Breast(20;0.00106)|all_neural(118;0.0804)		OV - Ovarian serous cystadenocarcinoma(97;0.00928)|BRCA - Breast invasive adenocarcinoma(99;0.0833)			GGGCTGCCGCGTGCTCTTCGG	0.657			NA											14	33					4.3838e-07	5.8727e-07	0.001855	1	0
METTL4	64863	broad.mit.edu	37	18	2555033	2555033	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:2555033C>A	uc002klh.3	-	4	1244	c.464G>T	c.(463-465)AGG>ATG	p.R155M	METTL4_uc010dkj.2_Translation_Start_Site	NM_022840	NP_073751	Q8N3J2	METL4_HUMAN	methyltransferase like 4	155					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		methyltransferase activity|nucleic acid binding			kidney(1)|skin(1)	2						AATCAGCTCCCTGATCTGTAA	0.338			NA											26	50					7.16444e-05	8.55305e-05	0.003954	1	0
EPB41L3	23136	broad.mit.edu	37	18	5397300	5397300	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:5397300C>G	uc002kmt.1	-	18	2684	c.2598G>C	c.(2596-2598)GCG>GCC	p.A866A	EPB41L3_uc010wzh.1_Silent_p.A697A|EPB41L3_uc002kmu.1_Silent_p.A644A|EPB41L3_uc010dkq.1_Silent_p.A535A|EPB41L3_uc002kms.1_Silent_p.A101A|EPB41L3_uc010wze.1_Silent_p.A171A|EPB41L3_uc010wzf.1_Silent_p.A163A|EPB41L3_uc010wzg.1_Silent_p.A138A|EPB41L3_uc010dkr.2_Silent_p.A258A	NM_012307	NP_036439	Q9Y2J2	E41L3_HUMAN	erythrocyte membrane protein band 4.1-like 3	866	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization	cell-cell junction|cytoplasm|cytoskeleton|extrinsic to membrane	actin binding|structural molecule activity			ovary(5)	5						CATCCCCACTCGCGTGCACCA	0.617			NA											8	45					0	0	0.004482	0	0
TXNDC2	84203	broad.mit.edu	37	18	9887046	9887046	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:9887046G>A	uc002koi.3	+	2	1019	c.570G>A	c.(568-570)AAG>AAA	p.K190K	TXNDC2_uc010wzq.1_Intron|TXNDC2_uc002koh.3_Silent_p.K123K	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	190	22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.|6.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						TCCAATCCAAGAAGGAGGACC	0.572			NA											29	51					0	0	0.008361	0	0
FAM38B	63895	broad.mit.edu	37	18	10681675	10681675	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:10681675C>A	uc002kor.3	-	9	1434	c.1294G>T	c.(1294-1296)GCT>TCT	p.A432S	FAM38B_uc002koq.2_Missense_Mutation_p.A267S	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2475						integral to membrane	ion channel activity			ovary(1)	1						CTAGAAAAAGCTTGTATAAAT	0.393			NA											10	42					7.48243e-07	9.9376e-07	0.006214	1	0
CABYR	26256	broad.mit.edu	37	18	21735744	21735744	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:21735744T>C	uc002kux.2	+	4	431	c.279T>C	c.(277-279)TCT>TCC	p.S93S	CABYR_uc010xbb.1_5'UTR|CABYR_uc002kuy.2_Silent_p.S93S|CABYR_uc002kuz.2_Silent_p.S93S|CABYR_uc002kva.2_Silent_p.S75S|CABYR_uc002kvb.2_5'UTR|CABYR_uc002kvc.2_Silent_p.S93S|CABYR_uc010dlw.2_RNA	NM_012189	NP_036321	O75952	CABYR_HUMAN	calcium-binding tyrosine	93					ciliary or flagellar motility|signal transduction|sperm capacitation	cytoplasm|cytoskeleton|flagellum|motile cilium|nucleus	calcium ion binding|cAMP-dependent protein kinase regulator activity|enzyme binding|protein heterodimerization activity|SH3 domain binding				0	all_cancers(21;9.13e-05)|all_epithelial(16;5.49e-07)|Lung NSC(20;0.00171)|all_lung(20;0.0055)|Colorectal(14;0.0305)|Ovarian(20;0.17)					CTGTAGAATCTAAAGTACCTA	0.378			NA											27	26					0	0	0.00632	0	0
CDH2	1000	broad.mit.edu	37	18	25565563	25565564	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:25565563_25565564CC>AA	uc002kwg.2	-	12	2362_2363	c.1903_1904GG>TT	c.(1903-1905)GGA>TTA	p.G635L	CDH2_uc010xbn.1_Missense_Mutation_p.G604L	NM_001792	NP_001783	P19022	CADH2_HUMAN	cadherin 2, type 1 preproprotein	635	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|positive regulation of muscle cell differentiation	catenin complex|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|gamma-catenin binding			ovary(3)|lung(1)	4						AGCAAATGGTCCAGCATTTGGA	0.381			NA											8	45					0	0	0.004672	0	0
ASXL3	80816	broad.mit.edu	37	18	31325106	31325106	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:31325106C>A	uc010dmg.1	+	12	5349	c.5294C>A	c.(5293-5295)CCA>CAA	p.P1765Q	ASXL3_uc002kxq.2_Missense_Mutation_p.P1472Q	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1765					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AAAGTGTTGCCACAGCCCAGA	0.512			NA											9	20					5.4927e-09	8.0151e-09	0.004482	1	0
ASXL3	80816	broad.mit.edu	37	18	31326041	31326041	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:31326041A>T	uc010dmg.1	+	12	6284	c.6229A>T	c.(6229-6231)AGC>TGC	p.S2077C	ASXL3_uc002kxq.2_Missense_Mutation_p.S1784C	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	2077					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GGGCATATGTAGCAATATAAA	0.413			NA											10	63					0	0	0.008291	0	0
RPRD1A	55197	broad.mit.edu	37	18	33610792	33610792	+	Silent	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:33610792T>G	uc002kzf.1	-	4	471	c.465A>C	c.(463-465)GGA>GGC	p.G155G	RPRD1A_uc002kze.1_Silent_p.G119G|RPRD1A_uc002kzg.2_Silent_p.G155G|RPRD1A_uc010dmw.2_Silent_p.G119G|RPRD1A_uc010dmx.2_Silent_p.G155G	NM_018170	NP_060640	Q96P16	RPR1A_HUMAN	regulation of nuclear pre-mRNA domain containing	155										ovary(1)|breast(1)	2						CACTTGGAGATCCCAGAGAGG	0.358			NA											3	20					0	0	0.004672	0	0
SLC14A2	8170	broad.mit.edu	37	18	43224063	43224063	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:43224063C>A	uc010dnj.2	+	11	1610	c.1289C>A	c.(1288-1290)CCC>CAC	p.P430H	SLC14A2_uc002lbb.2_Missense_Mutation_p.P430H|SLC14A2_uc002lbe.2_Missense_Mutation_p.P430H	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	430						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GTCACCTACCCCGAGGCCAAC	0.562			NA											26	108					1.16021e-09	1.73165e-09	0.007291	1	0
MYO5B	4645	broad.mit.edu	37	18	47527634	47527634	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:47527634G>A	uc002leb.2	-	5	891	c.603C>T	c.(601-603)CCC>CCT	p.P201P	MYO5B_uc002lec.1_Silent_p.P200P	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	201	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		CCTCCATGATGGGACTGGATG	0.587			NA											11	59					0	0	0.010729	0	0
DCC	1630	broad.mit.edu	37	18	50683813	50683813	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:50683813G>T	uc002lfe.1	+	8	1936	c.1349G>T	c.(1348-1350)CGC>CTC	p.R450L	DCC_uc010xdr.1_Missense_Mutation_p.R298L|DCC_uc010dpf.1_Missense_Mutation_p.R105L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	450	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTCAGCTGGCGCCCACCTGCA	0.502			NA											17	65					7.07596e-05	8.45336e-05	0.006122	1	0
DCC	1630	broad.mit.edu	37	18	50866234	50866234	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:50866234G>A	uc002lfe.1	+	15	2903	c.2316G>A	c.(2314-2316)GTG>GTA	p.V772V	DCC_uc010xdr.1_Silent_p.V620V|DCC_uc010dpf.1_Silent_p.V427V	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	772	Extracellular (Potential).|Fibronectin type-III 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTGAGACAGTGCGTGTGGACA	0.418			NA											8	37					0	0	0.004482	0	0
WDR7	23335	broad.mit.edu	37	18	54688028	54688028	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:54688028G>T	uc002lgk.1	+	27	4428	c.4217G>T	c.(4216-4218)GGA>GTA	p.G1406V	WDR7_uc002lgl.1_Missense_Mutation_p.G1373V	NM_015285	NP_056100	Q9Y4E6	WDR7_HUMAN	rabconnectin-3 beta isoform 1	1406	WD 9.									ovary(2)|skin(1)	3				Lung(128;0.0238)|Colorectal(16;0.0296)		GCTCCTGATGGAAGATATCTT	0.413			NA											13	64					0.000151284	0.000178105	0.001855	1	0
ST8SIA3	51046	broad.mit.edu	37	18	55024505	55024505	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:55024505C>A	uc002lgn.2	+	3	1021	c.664C>A	c.(664-666)CTC>ATC	p.L222I		NM_015879	NP_056963	O43173	SIA8C_HUMAN	ST8 alpha-N-acetyl-neuraminide	222	Lumenal (Potential).				glycosphingolipid biosynthetic process|N-glycan processing|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			breast(1)|skin(1)	2				READ - Rectum adenocarcinoma(59;0.19)|Colorectal(16;0.205)		TTACAACAATCTCTTGACTAT	0.423			NA											8	29					0.000157383	0.000182879	0.00308	1	0
ONECUT2	9480	broad.mit.edu	37	18	55103647	55103647	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:55103647C>T	uc002lgo.2	+	1	731	c.699C>T	c.(697-699)GGC>GGT	p.G233G		NM_004852	NP_004843	O95948	ONEC2_HUMAN	one cut domain, family member 2	233					organ morphogenesis	nucleus	sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3		Colorectal(73;0.234)		READ - Rectum adenocarcinoma(59;0.227)|Colorectal(16;0.245)		CGCCGCTGGGCAACGGGCTAG	0.672			NA											3	19					0	0	0.009096	0	0
MALT1	10892	broad.mit.edu	37	18	56409154	56409154	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:56409154T>C	uc002lhm.1	+	14	1919	c.1661T>C	c.(1660-1662)TTA>TCA	p.L554S	MALT1_uc002lhn.1_Missense_Mutation_p.L543S	NM_006785	NP_006776	Q9UDY8	MALT1_HUMAN	mucosa associated lymphoid tissue lymphoma	554	Caspase-like.				activation of NF-kappaB-inducing kinase activity|anti-apoptosis|nuclear export|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-2 production|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphorylation|positive regulation of protein ubiquitination|positive regulation of T cell cytokine production|protein oligomerization|proteolysis|T cell receptor signaling pathway	CBM complex|cytosol|nucleus|perinuclear region of cytoplasm	cysteine-type endopeptidase activity|protein self-association|signal transducer activity|ubiquitin-protein ligase activity			ovary(2)|lung(1)|central_nervous_system(1)	4						CGAAGTAGTTTATCTGAGAAG	0.388			NA	T	BIRC3	MALT								11	48					0	0	0.001368	0	0
SERPINB12	89777	broad.mit.edu	37	18	61232706	61232706	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:61232706C>A	uc010xen.1	+	6	674	c.674C>A	c.(673-675)ACG>AAG	p.T225K	SERPINB12_uc010xeo.1_Missense_Mutation_p.T245K	NM_080474	NP_536722	Q96P63	SPB12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	225					negative regulation of protein catabolic process|regulation of proteolysis	cytoplasm	enzyme binding|serine-type endopeptidase inhibitor activity				0						AAGATGATGACGCAAAAAGGC	0.488			NA											12	58					3.07112e-06	3.94924e-06	0.010729	1	0
SERPINB4	6318	broad.mit.edu	37	18	61328425	61328425	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:61328425G>T	uc002ljg.2	-	1	52	c.26C>A	c.(25-27)ACC>AAC	p.T9N	SERPINB3_uc002lji.2_Missense_Mutation_p.T9N|SERPINB3_uc010dqa.2_Missense_Mutation_p.T9N|SERPINB3_uc010dqb.2_Missense_Mutation_p.T9N|SERPINB3_uc010dqc.2_Missense_Mutation_p.T9N			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	9					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CATGAACTTGGTGTTGGCTTC	0.418			NA											18	94					4.35082e-09	6.42048e-09	0.010504	1	0
CCDC102B	79839	broad.mit.edu	37	18	66504519	66504519	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:66504519A>G	uc002lkk.2	+	4	742	c.519A>G	c.(517-519)CAA>CAG	p.Q173Q	CCDC102B_uc002lki.2_Silent_p.Q173Q|CCDC102B_uc002lkj.1_Silent_p.Q173Q	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	173										ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				ATACAGACCAATTTCAATTGA	0.373			NA											18	79					0	0	0.00499	0	0
RTTN	25914	broad.mit.edu	37	18	67863821	67863821	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:67863821C>A	uc002lkp.2	-	7	825	c.757G>T	c.(757-759)GTG>TTG	p.V253L	RTTN_uc002lko.2_RNA|RTTN_uc010xfb.1_5'UTR|RTTN_uc002lkq.1_Missense_Mutation_p.V253L	NM_173630	NP_775901	Q86VV8	RTTN_HUMAN	rotatin	253							binding			ovary(3)|pancreas(2)|skin(1)|breast(1)|central_nervous_system(1)	8		Esophageal squamous(42;0.129)				AGGCAGGACACCGACTGTAAT	0.413			NA											24	37					2.21704e-12	3.61011e-12	0.00278	1	0
SALL3	27164	broad.mit.edu	37	18	76754811	76754811	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:76754811C>A	uc002lmt.2	+	2	2820	c.2820C>A	c.(2818-2820)AGC>AGA	p.S940R	SALL3_uc010dra.2_Missense_Mutation_p.S547R	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	940					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		GGCCGGACAGCCCAgccgccg	0.537			NA											3	5					0.004672	0.00503002	0.004672	1	0
PALM	5064	broad.mit.edu	37	19	746629	746629	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:746629G>C	uc002lpm.1	+	9	1173	c.979G>C	c.(979-981)GAG>CAG	p.E327Q	PALM_uc002lpn.1_Missense_Mutation_p.E283Q|PALM_uc010xfu.1_Missense_Mutation_p.E192Q	NM_002579	NP_002570	O75781	PALM_HUMAN	paralemmin isoform 1	327					cellular component movement|negative regulation of adenylate cyclase activity|negative regulation of dopamine receptor signaling pathway|positive regulation of filopodium assembly|regulation of cell shape	cytoplasmic membrane-bounded vesicle|filopodium membrane|integral to plasma membrane					0		all_epithelial(18;2.19e-21)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)|Lung(535;0.201)		CATCACGGCGGAGCTGGTGGT	0.627			NA											6	14					0	0	0.001168	0	0
C19orf21	126353	broad.mit.edu	37	19	757678	757678	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:757678G>T	uc002lpo.2	+	2	815	c.732G>T	c.(730-732)GTG>GTT	p.V244V		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	244										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACGGGCACGTGGTTCCCATCA	0.662			NA											9	7					2.17888e-05	2.68607e-05	0.006214	1	0
ABCA7	10347	broad.mit.edu	37	19	1043816	1043816	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:1043816C>G	uc002lqw.3	+	10	1254	c.1023C>G	c.(1021-1023)GAC>GAG	p.D341E	ABCA7_uc010dsb.1_Missense_Mutation_p.D203E	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	341	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCATGAACGACAGTTCCAATG	0.637			NA											23	85					0	0	0.00278	0	0
FZR1	51343	broad.mit.edu	37	19	3532599	3532599	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:3532599C>T	uc010dtk.2	+	10	1227	c.1193C>T	c.(1192-1194)ACG>ATG	p.T398M	FZR1_uc002lxt.2_Missense_Mutation_p.T398M|FZR1_uc002lxv.2_Missense_Mutation_p.T309M	NM_001136198	NP_001129670	Q9UM11	FZR_HUMAN	Fzr1 protein isoform 1	398	WD 6.				activation of anaphase-promoting complex activity|anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|DNA repair|G2/M transition DNA damage checkpoint|mitosis|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|S phase of mitotic cell cycle	cytosol|nucleoplasm	protein binding			lung(1)|kidney(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00253)|STAD - Stomach adenocarcinoma(1328;0.18)		TGTATCGACACGGGCTCCCAA	0.662			NA											5	13					0	0	0.001168	0	0
MATK	4145	broad.mit.edu	37	19	3779011	3779011	+	Silent	SNP	C	C	A	rs140717053	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:3779011C>A	uc002lyt.2	-	12	1576	c.1176G>T	c.(1174-1176)GCG>GCT	p.A392A	MATK_uc002lyv.2_Silent_p.A393A|MATK_uc002lyu.2_Silent_p.A351A|MATK_uc010dtq.2_Silent_p.A392A	NM_139355	NP_647612	P42679	MATK_HUMAN	megakaryocyte-associated tyrosine kinase isoform	392	Protein kinase.				cell proliferation|mesoderm development|positive regulation of cell proliferation	cytoplasm|nucleus	ATP binding|non-membrane spanning protein tyrosine kinase activity			stomach(2)|ovary(1)|lung(1)|large_intestine(1)	5		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|STAD - Stomach adenocarcinoma(1328;0.18)		GAGCCTCGGGCGCCGTCCACT	0.522			NA											4	21					0.000602214	0.000676645	0.000602	1	0
PLIN4	729359	broad.mit.edu	37	19	4511323	4511323	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:4511323G>T	uc002mar.1	-	3	2607	c.2607C>A	c.(2605-2607)GGC>GGA	p.G869G	PLIN4_uc010dub.1_5'UTR	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	869	27 X 33 AA approximate tandem repeat.|24.					lipid particle|plasma membrane					0						TAGTGTCCAGGCCCCCCTGGA	0.587			NA											10	85					4.68919e-08	6.60997e-08	0.008291	1	0
INSR	3643	broad.mit.edu	37	19	7125416	7125416	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:7125416T>G	uc002mgd.1	-	17	3245	c.3136A>C	c.(3136-3138)ATC>CTC	p.I1046L	INSR_uc002mge.1_Missense_Mutation_p.I1034L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1046	Protein kinase.|Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCACCCTTGATGATGTCCCTG	0.602			NA											11	56					0	0	0.008291	0	0
INSR	3643	broad.mit.edu	37	19	7143017	7143017	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:7143017G>A	uc002mgd.1	-	12	2461	c.2352C>T	c.(2350-2352)TCC>TCT	p.S784S	INSR_uc002mge.1_Silent_p.S772S	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	784	Fibronectin type-III 2.|Extracellular (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CGCTGGTCGAGGAAGTGTTGG	0.612			NA											5	33					0	0	0.000602	0	0
PRAM1	84106	broad.mit.edu	37	19	8564404	8564404	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:8564404C>A	uc002mkd.2	-	2	308	c.288G>T	c.(286-288)CCG>CCT	p.P96P	PRAM1_uc002mkc.2_Silent_p.P96P	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	144	Pro-rich.|7.|8 X 12 AA repeats of K-P-P-[PQ]-P-[EQ]- [VAF]-T-D-L-P-K.						lipid binding|protein binding				0						CCTCAGGCGGCGGGGGCTTCT	0.642			NA											4	87					0.00909568	0.00964006	0.009096	1	0
PRAM1	84106	broad.mit.edu	37	19	8564440	8564440	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:8564440C>A	uc002mkd.2	-	2	272	c.252G>T	c.(250-252)CCG>CCT	p.P84P	PRAM1_uc002mkc.2_Silent_p.P84P	NM_032152	NP_115528	Q96QH2	PRAM_HUMAN	PML-RARA regulated adaptor molecule 1	132	Pro-rich.|6.|8 X 12 AA repeats of K-P-P-[PQ]-P-[EQ]- [VAF]-T-D-L-P-K.						lipid binding|protein binding				0						CCTCAGGCGGCGGGGGCTTCT	0.667			NA											10	90					0.000442599	0.000502282	0.006214	1	0
ZNF558	148156	broad.mit.edu	37	19	8922257	8922257	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:8922257C>A	uc002mkn.1	-	6	1139	c.909G>T	c.(907-909)AAG>AAT	p.K303N	ZNF558_uc010xkh.1_Missense_Mutation_p.K232N|ZNF558_uc010dwg.1_Missense_Mutation_p.K303N	NM_144693	NP_653294	Q96NG5	ZN558_HUMAN	zinc finger protein 558	303	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			central_nervous_system(1)	1						GATAGGAGCTCTTCCTGAAGG	0.443			NA											20	46					6.44725e-10	9.7166e-10	0.002299	1	0
MUC16	94025	broad.mit.edu	37	19	9048196	9048196	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9048196T>A	uc002mkp.2	-	5	33639	c.33435A>T	c.(33433-33435)TCA>TCT	p.S11145S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11147	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GTACCTCAGGTGAAACAGTTA	0.458			NA											5	41					0	0	0.000602	0	0
MUC16	94025	broad.mit.edu	37	19	9058542	9058542	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9058542G>A	uc002mkp.2	-	3	29108	c.28904C>T	c.(28903-28905)ACA>ATA	p.T9635I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9637	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGTGACATTGTGGACTGAGC	0.498			NA											6	46					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9063543	9063543	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9063543G>C	uc002mkp.2	-	3	24107	c.23903C>G	c.(23902-23904)ACT>AGT	p.T7968S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7970	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGAAGGTCTAGTTTTTTCCAG	0.468			NA											11	15					0	0	0.008291	0	0
MUC16	94025	broad.mit.edu	37	19	9066013	9066013	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9066013G>T	uc002mkp.2	-	3	21637	c.21433C>A	c.(21433-21435)CCA>ACA	p.P7145T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7147	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACAAGTTCTGGGCTTGTGTGT	0.498			NA											35	43					6.90743e-12	1.10259e-11	0.003755	1	0
MUC16	94025	broad.mit.edu	37	19	9069697	9069697	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9069697T>A	uc002mkp.2	-	3	17953	c.17749A>T	c.(17749-17751)AGC>TGC	p.S5917C		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5919	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGGAGGGCTTTGCCATGAC	0.493			NA											20	26					0	0	0.008871	0	0
MUC16	94025	broad.mit.edu	37	19	9075151	9075151	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9075151G>T	uc002mkp.2	-	3	12499	c.12295C>A	c.(12295-12297)CCA>ACA	p.P4099T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4101	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCGCCAGGTGGACTTGTTTGC	0.507			NA											9	53					0.000274275	0.000314197	0.004482	1	0
MUC16	94025	broad.mit.edu	37	19	9083001	9083001	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9083001C>A	uc002mkp.2	-	1	9018	c.8814G>T	c.(8812-8814)AGG>AGT	p.R2938S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2939	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TCATCCTTGCCCTTGGGTTTT	0.483			NA											21	31					1.50039e-11	2.37271e-11	0.012319	1	0
MUC16	94025	broad.mit.edu	37	19	9084796	9084796	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9084796G>T	uc002mkp.2	-	1	7223	c.7019C>A	c.(7018-7020)ACA>AAA	p.T2340K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2340	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CAGTGAAACTGTGCTGGTCTC	0.473			NA											8	23					0.000274275	0.000314197	0.004482	1	0
MUC16	94025	broad.mit.edu	37	19	9089680	9089681	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9089680_9089681GG>TT	uc002mkp.2	-	1	2338_2339	c.2134_2135CC>AA	c.(2134-2136)CCA>AAA	p.P712K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	712	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGCAGAGTCTGGTTCAGGGGAA	0.495			NA											4	42					0	0	0.004672	0	0
MUC16	94025	broad.mit.edu	37	19	9090897	9090897	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9090897G>T	uc002mkp.2	-	1	1122	c.918C>A	c.(916-918)CTC>CTA	p.L306L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	306	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGGGAGGTGAGACTCTGGC	0.498			NA											21	56					1.9806e-07	2.71096e-07	0.002299	1	0
ZNF560	147741	broad.mit.edu	37	19	9584916	9584916	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:9584916C>T	uc002mlp.1	-	4	326	c.116G>A	c.(115-117)AGA>AAA	p.R39K	ZNF560_uc010dwr.1_5'UTR	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	39	KRAB 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CATCACATCTCTGTATAAGTT	0.438			NA											8	50					0	0	0.00308	0	0
COL5A3	50509	broad.mit.edu	37	19	10107362	10107362	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:10107362G>A	uc002mmq.1	-	12	1353	c.1267C>T	c.(1267-1269)CCT>TCT	p.P423S		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	423	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			AGGCCAGCAGGGCCCTgagag	0.333			NA											4	7					0	0	0.009096	0	0
MAST1	22983	broad.mit.edu	37	19	12949442	12949442	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:12949442G>A	uc002mvm.2	+	1	184	c.56G>A	c.(55-57)GGC>GAC	p.G19D	MAST1_uc002mvk.2_Intron|MAST1_uc002mvl.2_Missense_Mutation_p.G19D	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	19					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						TCCTTCCCCGGCGGCAGTATG	0.502			NA											7	18					0	0	0.006214	0	0
LPHN1	22859	broad.mit.edu	37	19	14266339	14266339	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:14266339T>A	uc010xnn.1	-	19	3437	c.3141A>T	c.(3139-3141)AAA>AAT	p.K1047N	LPHN1_uc010xno.1_Missense_Mutation_p.K1042N|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	1047	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GCGCCCAGGATCTGGGAGTGG	0.677			NA											22	27					0	0	0.002299	0	0
SLC1A6	6511	broad.mit.edu	37	19	15064949	15064949	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:15064949G>T	uc002naa.1	-	7	1370	c.1362C>A	c.(1360-1362)ATC>ATA	p.I454I	SLC1A6_uc010dzu.1_Silent_p.I376I|SLC1A6_uc010xod.1_Silent_p.I390I	NM_005071	NP_005062	P48664	EAA4_HUMAN	solute carrier family 1 (high affinity	454					synaptic transmission	integral to plasma membrane|membrane fraction	high-affinity glutamate transmembrane transporter activity|L-aspartate transmembrane transporter activity|sodium:dicarboxylate symporter activity			pancreas(3)|ovary(2)|skin(1)	6					L-Glutamic Acid(DB00142)	CCCCTCACCTGATGGTTGTGA	0.592			NA											12	33					4.3838e-07	5.8727e-07	0.001855	1	0
OR10H5	284433	broad.mit.edu	37	19	15905108	15905108	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:15905108G>A	uc010xos.1	+	1	250	c.250G>A	c.(250-252)GAC>AAC	p.D84N		NM_001004466	NP_001004466	Q8NGA6	O10H5_HUMAN	olfactory receptor, family 10, subfamily H,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CATGCTGGCCGACCTGCTGTC	0.612			NA											6	74					0	0	0.001984	0	0
CALR3	125972	broad.mit.edu	37	19	16595992	16595992	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:16595992C>T	uc002ned.2	-	4	537	c.474G>A	c.(472-474)AAG>AAA	p.K158K	MED26_uc002nee.2_Intron	NM_145046	NP_659483	Q96L12	CALR3_HUMAN	calreticulin 3 precursor	158	N-domain.				protein folding	endoplasmic reticulum lumen	calcium ion binding|sugar binding|unfolded protein binding				0						TGATCAGTTTCTTGTTTTCGT	0.308			NA											6	13					0	0	0.001168	0	0
USHBP1	83878	broad.mit.edu	37	19	17369165	17369165	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:17369165A>G	uc002nfs.1	-	8	1189	c.1076T>C	c.(1075-1077)CTG>CCG	p.L359P	USHBP1_uc002nfr.1_5'UTR|USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Missense_Mutation_p.L295P	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	359							PDZ domain binding			ovary(1)	1						CAGAGCAAGCAGAACCCTGTA	0.488			NA											10	30					0	0	0.006214	0	0
COMP	1311	broad.mit.edu	37	19	18895885	18895885	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:18895885C>T	uc002nke.2	-	16	1771	c.1735G>A	c.(1735-1737)GGC>AGC	p.G579S	COMP_uc002nkd.2_Missense_Mutation_p.G546S|COMP_uc010xqj.1_Missense_Mutation_p.G526S	NM_000095	NP_000086	P49747	COMP_HUMAN	cartilage oligomeric matrix protein precursor	579	Mediates cell survival and induction of the IAP family of survival proteins.|TSP C-terminal.				anti-apoptosis|apoptosis|cell adhesion|limb development	extracellular space|proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent|heparan sulfate proteoglycan binding|heparin binding				0						AAGTCCACGCCATTGAAGGCA	0.592			NA											15	40					0	0	0.004007	0	0
NCAN	1463	broad.mit.edu	37	19	19338321	19338321	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:19338321C>A	uc002nlz.2	+	8	1991	c.1892C>A	c.(1891-1893)CCT>CAT	p.P631H	NCAN_uc010ecc.1_Missense_Mutation_p.P195H	NM_004386	NP_004377	O14594	NCAN_HUMAN	chondroitin sulfate proteoglycan 3 precursor	631					axon guidance|cell adhesion	extracellular region	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(4)	4			Epithelial(12;0.00544)			CCAGATCTCCCTATGATGGCC	0.632			NA											12	33					6.40141e-05	7.65288e-05	0.010729	1	0
ZNF430	80264	broad.mit.edu	37	19	21240398	21240398	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:21240398C>G	uc002npj.2	+	5	1394	c.1284C>G	c.(1282-1284)CCC>CCG	p.P428P	ZNF430_uc002npk.2_Silent_p.P427P	NM_025189	NP_079465	Q9H8G1	ZN430_HUMAN	zinc finger protein 430	428					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2						GAGAGAAACCCTACAAATGTG	0.363			NA											7	19					0	0	0.00308	0	0
ZNF208	7757	broad.mit.edu	37	19	22155018	22155018	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:22155018C>T	uc002nqp.2	-	5	2667	c.2518G>A	c.(2518-2520)GCT>ACT	p.A840T	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TTCTCTCCAGCATGAGTTTTC	0.373			NA											5	19					0	0	0.000602	0	0
ZNF208	7757	broad.mit.edu	37	19	22156554	22156554	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:22156554C>A	uc002nqp.2	-	4	1431	c.1282G>T	c.(1282-1284)GAA>TAA	p.E428*	ZNF208_uc002nqo.1_Intron|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CCACATTCTTCACATTTGTAG	0.393			NA											11	28					2.27111e-07	3.08624e-07	0.001368	1	0
ZNF257	113835	broad.mit.edu	37	19	22256291	22256291	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:22256291G>T	uc010ecx.2	+	3	320	c.151G>T	c.(151-153)GAC>TAC	p.D51Y	ZNF257_uc010ecy.2_Missense_Mutation_p.D19Y	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	51	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				CTCTAAGCCAGACCTGATCAC	0.413			NA											30	101					1.22384e-17	2.19464e-17	0.002836	1	0
ZNF99	7652	broad.mit.edu	37	19	22939489	22939489	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:22939489G>T	uc010xrh.1	-	7	2682	c.2682C>A	c.(2680-2682)GGC>GGA	p.G894G		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TAAAACCTTTGCCACATTCTT	0.353			NA											4	26					0.00909568	0.00964006	0.009096	1	0
UQCRFS1	7386	broad.mit.edu	37	19	29698967	29698967	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:29698967C>A	uc002nsd.2	-	2	424	c.313G>T	c.(313-315)GAA>TAA	p.E105*		NM_006003	NP_005994	P47985	UCRI_HUMAN	ubiquinol-cytochrome c reductase, Rieske	105					respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex III	2 iron, 2 sulfur cluster binding|metal ion binding|ubiquinol-cytochrome-c reductase activity				0	Breast(6;0.0545)|Esophageal squamous(110;0.239)		Lung(7;0.092)			TCGCTGCTTTCTCTTGAAGAC	0.473			NA											29	50					2.12542e-12	3.4709e-12	0.00632	1	0
CCNE1	898	broad.mit.edu	37	19	30308449	30308449	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:30308449G>T	uc002nsn.2	+	6	645	c.462_splice	c.e6+1	p.E154_splice	CCNE1_uc002nso.2_Splice_Site_p.E139_splice	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1						androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			GTTAATGGAGGTGAGCTTGAG	0.433			NA											15	82					0.000308642	0.00035309	0.003163	1	0
ZNF536	9745	broad.mit.edu	37	19	30935048	30935048	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:30935048C>A	uc002nsu.1	+	2	717	c.579C>A	c.(577-579)CGC>CGA	p.R193R	ZNF536_uc010edd.1_Silent_p.R193R	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GGCGTGTGCGCGAGGAGAACC	0.692			NA											3	10					0.004672	0.00503002	0.004672	1	0
TSHZ3	57616	broad.mit.edu	37	19	31769324	31769324	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:31769324G>A	uc002nsy.3	-	2	1440	c.1375C>T	c.(1375-1377)CCT>TCT	p.P459S		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	459					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					ATGCTGGCAGGTGTATTGGAG	0.552			NA											4	116					0	0	0.009096	0	0
SLC7A9	11136	broad.mit.edu	37	19	33355660	33355660	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:33355660G>A	uc002ntv.3	-	3	227	c.110C>T	c.(109-111)TCC>TTC	p.S37F	SLC7A9_uc002ntt.3_Intron|SLC7A9_uc002ntu.3_Missense_Mutation_p.S37F|SLC7A9_uc002ntw.3_Intron	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	37	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	CACGATGATGGAGATGCCACT	0.627	GBM(181;1335 2108 9644 44178 46689)		NA											26	114					0	0	0.00632	0	0
GPATCH1	55094	broad.mit.edu	37	19	33597774	33597774	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:33597774G>T	uc002nug.1	+	10	1568	c.1254G>T	c.(1252-1254)CGG>CGT	p.R418R		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	418						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					CCTCCAAACGGGCTGAGTTGC	0.463	Pancreas(67;88 1713 4567 18227)		NA											14	17					1.5842e-08	2.2862e-08	0.001855	1	0
FFAR2	2867	broad.mit.edu	37	19	35941285	35941285	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:35941285G>T	uc002nzg.2	+	2	749	c.669G>T	c.(667-669)CTG>CTT	p.L223L	FFAR2_uc010eea.2_Silent_p.L223L	NM_005306	NP_005297	O15552	FFAR2_HUMAN	free fatty acid receptor 2	223	Helical; Name=6; (Potential).					integral to plasma membrane	G-protein coupled receptor activity|lipid binding			central_nervous_system(1)	1	all_lung(56;1.89e-08)|Lung NSC(56;2.9e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)			CCGTGGGGCTGGCTGTGGTGA	0.612	GBM(40;139 809 9833 23358 48736)		NA											16	48					1.3612e-06	1.79244e-06	0.003163	1	0
WDR62	284403	broad.mit.edu	37	19	36562599	36562599	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:36562599G>T	uc002odc.2	+	8	1115	c.1024G>T	c.(1024-1026)GCA>TCA	p.A342S	WDR62_uc002odd.2_Missense_Mutation_p.A342S|WDR62_uc002odb.2_Missense_Mutation_p.A342S	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	342					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGTAGACGTGGCACAGGGCCT	0.607			NA											19	11					3.62473e-10	5.51167e-10	0.012319	1	0
ZNF345	25850	broad.mit.edu	37	19	37368191	37368191	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:37368191A>T	uc002oex.2	+	3	837	c.459A>T	c.(457-459)AAA>AAT	p.K153N	ZNF345_uc002oey.3_Missense_Mutation_p.K153N|ZNF345_uc002oez.2_Intron	NM_003419	NP_003410	Q14585	ZN345_HUMAN	zinc finger protein 345	153	C2H2-type 4.				negative regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Esophageal squamous(110;0.183)		COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AATGTGGGAAAGCCTTTAGTT	0.423			NA											7	27					0	0	0.00308	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38609996	38609996	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:38609996C>T	uc002ohk.2	+	9	2851	c.2342C>T	c.(2341-2343)CCC>CTC	p.P781L		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	781	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CCCCCCATCCCCAGTGGAACC	0.542			NA											10	54					0	0	0.001368	0	0
GGN	199720	broad.mit.edu	37	19	38876354	38876354	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:38876354G>T	uc002oij.1	-	3	1683	c.1548C>A	c.(1546-1548)CCC>CCA	p.P516P	GGN_uc002oik.1_Intron|GGN_uc010efy.1_Silent_p.P433P	NM_152657	NP_689870	Q86UU5	GGN_HUMAN	gametogenetin	516	Interactions with ZNF403/GGNBP2 and OAZ3 (By similarity).|Pro-rich.				cell differentiation|multicellular organismal development|spermatogenesis						0	all_cancers(60;3.4e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			gcgcagccgcgggtgcgggcg	0.289			NA											10	17					2.80697e-09	4.15305e-09	0.010729	1	0
SARS2	54938	broad.mit.edu	37	19	39408393	39408393	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:39408393C>A	uc002oka.2	-	12	1291	c.1131G>T	c.(1129-1131)GAG>GAT	p.E377D	SARS2_uc002ojz.2_Missense_Mutation_p.E187D|SARS2_uc010xup.1_Missense_Mutation_p.E379D|SARS2_uc002okb.2_Missense_Mutation_p.E377D|SARS2_uc010xuq.1_Missense_Mutation_p.E377D|SARS2_uc010xur.1_RNA	NM_017827	NP_060297	Q9NP81	SYSM_HUMAN	seryl-tRNA synthetase 2 isoform b precursor	377					seryl-tRNA aminoacylation	mitochondrial matrix	ATP binding|protein binding|serine-tRNA ligase activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(60;2.74e-06)|all_epithelial(25;4.36e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			CTGTCAAGATCTCCATCTGAA	0.637			NA											16	32					0.000422831	0.000483398	0.004007	1	0
LTBP4	8425	broad.mit.edu	37	19	41105418	41105418	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:41105418C>A	uc002ooh.1	+	3	297	c.297C>A	c.(295-297)CCC>CCA	p.P99P	LTBP4_uc002oog.1_Silent_p.P62P|LTBP4_uc002ooi.1_5'Flank	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	99					growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GTCCCAGCCCCAGCGTGAGGA	0.627			NA											44	31					7.63091e-17	1.35413e-16	0.007835	1	0
EGLN2	112398	broad.mit.edu	37	19	41312536	41312536	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:41312536G>T	uc010ehd.2	+	9	1921	c.920G>T	c.(919-921)TGC>TTC	p.C307F	EGLN2_uc002opg.3_Missense_Mutation_p.C307F|EGLN2_uc002oph.2_Missense_Mutation_p.C307F|EGLN2_uc002opi.2_Missense_Mutation_p.C307F	NM_080732	NP_542770	Q96KS0	EGLN2_HUMAN	EGL nine (C.elegans) homolog 2	307	Fe2OG dioxygenase.				cell redox homeostasis|estrogen receptor signaling pathway|positive regulation of protein catabolic process|regulation of cell growth|response to hypoxia	cytoplasm|nucleus	ferrous iron binding|L-ascorbic acid binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|oxygen sensor activity			ovary(2)	2			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)		Vitamin C(DB00126)	GATGGGCGCTGCATCACCTGT	0.413			NA									OREG0025478	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	39					4.3838e-07	5.8727e-07	0.001855	1	0
PSG7	5676	broad.mit.edu	37	19	43439795	43439795	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:43439795C>A	uc002ovl.3	-	2	293	c.191G>T	c.(190-192)GGC>GTC	p.G64V	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG7_uc010xwl.1_Intron	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	64	Ig-like V-type.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CCAGATGTGGCCAGTAAGATT	0.453			NA											62	77					1.4051e-37	2.72369e-37	0.00361	1	0
PSG11	5680	broad.mit.edu	37	19	43519313	43519313	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:43519313C>G	uc002ovm.1	-	4	1026	c.919G>C	c.(919-921)GCC>CCC	p.A307P	PSG11_uc002ouw.2_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Intron|PSG11_uc002ovn.1_Missense_Mutation_p.A313P|PSG11_uc002ovo.1_Missense_Mutation_p.A185P|PSG11_uc002ovp.1_Missense_Mutation_p.A185P	NM_002785	NP_002776	Q9UQ72	PSG11_HUMAN	pregnancy specific beta-1-glycoprotein 11	307	Ig-like C2-type 2.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				TCGCCAGTGGCTGAGTTACGA	0.458			NA											85	43					0	0	0.00361	0	0
PSG4	5672	broad.mit.edu	37	19	43698662	43698662	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:43698662G>A	uc002ovy.2	-	5	1175	c.1073C>T	c.(1072-1074)TCT>TTT	p.S358F	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.S265F|PSG4_uc002ovz.2_Missense_Mutation_p.S265F	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	358	Ig-like C2-type 3.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				CCGTGGGTTAGACTCGGCGAA	0.468			NA											87	66					0	0	0.00361	0	0
PVRL2	5819	broad.mit.edu	37	19	45391414	45391414	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:45391414A>G	uc002ozw.1	+	9	1785	c.1395A>G	c.(1393-1395)GGA>GGG	p.G465G		NM_001042724	NP_001036189	Q92692	PVRL2_HUMAN	poliovirus receptor related 2 isoform delta	465	Cytoplasmic (Potential).				adherens junction organization|adhesion to symbiont|cell junction assembly|homophilic cell adhesion|positive regulation of immunoglobulin mediated immune response|positive regulation of mast cell activation|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity|viral envelope fusion with host membrane|virion attachment, binding of host cell surface coreceptor	cell surface|integral to membrane|zonula adherens	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0	Lung NSC(12;0.00195)|all_lung(12;0.00522)	Ovarian(192;0.0728)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0143)		AACGGTCAGGACCCTTGCACC	0.552			NA											11	40					0	0	0.008291	0	0
LIG1	3978	broad.mit.edu	37	19	48640796	48640796	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:48640796T>A	uc002pia.1	-	13	1357	c.1237A>T	c.(1237-1239)AGG>TGG	p.R413W	LIG1_uc010xze.1_Missense_Mutation_p.R106W|LIG1_uc002phz.1_RNA|LIG1_uc002pib.1_RNA|LIG1_uc010xzf.1_Missense_Mutation_p.R345W|LIG1_uc010xzg.1_Missense_Mutation_p.R382W|LIG1_uc010xzh.1_RNA	NM_000234	NP_000225	P18858	DNLI1_HUMAN	DNA ligase I	413					anatomical structure morphogenesis|base-excision repair|cell division|DNA ligation involved in DNA repair|DNA strand elongation involved in DNA replication|double-strand break repair via homologous recombination|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	ATP binding|DNA binding|DNA ligase (ATP) activity|metal ion binding			large_intestine(2)|lung(1)	3		all_epithelial(76;3.1e-06)|all_lung(116;4.39e-06)|Lung NSC(112;8.96e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;8.45e-05)|all cancers(93;0.000423)|Epithelial(262;0.0177)|GBM - Glioblastoma multiforme(486;0.0329)	Bleomycin(DB00290)	CCAGTGAGCCTGGCGATGTCG	0.667			NA						NER					5	15					0	0	0.001984	0	0
SEC1	653677	broad.mit.edu	37	19	49183658	49183658	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:49183658C>A	uc010xzv.1	+	5	805	c.678C>A	c.(676-678)AAC>AAA	p.N226K	SEC1_uc002pka.2_Missense_Mutation_p.N186K|SEC1_uc010xzw.1_Missense_Mutation_p.N143K|SEC1_uc010ema.2_Missense_Mutation_p.N132K	NR_004401				SubName: Full=cDNA FLJ58287, highly similar to Galactoside 2-alpha-L-fucosyltransferase 2 (EC 2.4.1.69);												0						ACCACCTGAACGACTGGATGG	0.657			NA											10	16					3.86212e-05	4.67636e-05	0.008291	1	0
IZUMO1	284359	broad.mit.edu	37	19	49244675	49244675	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:49244675G>T	uc002pkj.2	-	9	1363	c.815C>A	c.(814-816)GCG>GAG	p.A272E	RASIP1_uc002pki.2_5'Flank|IZUMO1_uc010eme.2_RNA|IZUMO1_uc010emf.2_RNA	NM_182575	NP_872381	Q8IYV9	IZUM1_HUMAN	izumo sperm-egg fusion 1 precursor	272	Extracellular (Potential).				fusion of sperm to egg plasma membrane	integral to membrane				ovary(1)	1		all_lung(116;0.000156)|Lung NSC(112;0.000251)|all_epithelial(76;0.000761)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000348)|Epithelial(262;0.019)|GBM - Glioblastoma multiforme(486;0.022)		CTCCGTGGTCGCCTCCCCCGG	0.562			NA											15	33					6.72482e-11	1.04404e-10	0.003163	1	0
PRR12	57479	broad.mit.edu	37	19	50100115	50100115	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:50100115G>T	uc002poo.3	+	4	2523	c.2523G>T	c.(2521-2523)CCG>CCT	p.P841P		NM_020719	NP_065770	Q9ULL5	PRR12_HUMAN	proline rich 12	20	Pro-rich.						DNA binding			central_nervous_system(1)|pancreas(1)	2		all_lung(116;2.45e-07)|Lung NSC(112;1.24e-06)|Ovarian(192;0.0728)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00319)|GBM - Glioblastoma multiforme(134;0.0132)		CGCCACCCCCGCCTCCACCAC	0.746			NA											3	4					0.00909568	0.00964006	0.009096	1	0
MED25	81857	broad.mit.edu	37	19	50340169	50340169	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:50340169A>T	uc002ppw.1	+	18	2265	c.2212A>T	c.(2212-2214)ATG>TTG	p.M738L	MED25_uc010ybe.1_Missense_Mutation_p.M525L|MED25_uc002ppx.1_Intron	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	738					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		GCCCAGCGTCATGGAGGACGA	0.627	GBM(51;894 1657 37868)		NA											4	8					0	0	0.009096	0	0
SYT3	84258	broad.mit.edu	37	19	51135839	51135839	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51135839C>G	uc002pst.2	-	2	1012	c.378G>C	c.(376-378)CTG>CTC	p.L126L	SYT3_uc002psv.2_Silent_p.L126L|SYT3_uc010ycd.1_Silent_p.L126L	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	126	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		GGCCGCCCAGCAGAGGATGGC	0.711			NA											6	5					0	0	0.001168	0	0
SHANK1	50944	broad.mit.edu	37	19	51171708	51171708	+	Missense_Mutation	SNP	C	C	T	rs148644527	by1000genomes	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51171708C>T	uc002psx.1	-	22	3528	c.3509G>A	c.(3508-3510)CGC>CAC	p.R1170H	SHANK1_uc002psw.1_Missense_Mutation_p.R554H	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	1170					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		CTGGCTGCTGCGGCCGCTGCT	0.522			NA											8	12					0	0	0.008291	0	0
KLK2	3817	broad.mit.edu	37	19	51379746	51379746	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51379746G>A	uc002ptv.2	+	3	266	c.225G>A	c.(223-225)CTG>CTA	p.L75L	KLK2_uc010eog.2_5'UTR|KLK2_uc010yck.1_Silent_p.L75L|KLK2_uc002ptu.2_Silent_p.L75L|KLK2_uc002ptt.2_RNA|KLK2_uc010ycl.1_Silent_p.L58L|KLK2_uc010ycm.1_5'UTR|KLK2_uc010eoh.2_5'UTR	NM_005551	NP_005542	P20151	KLK2_HUMAN	kallikrein 2, prostatic isoform 1	75	Peptidase S1.				proteolysis		serine-type endopeptidase activity			ovary(1)|skin(1)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00758)|GBM - Glioblastoma multiforme(134;0.00871)		AGGTCTGGCTGGGTCGGCACA	0.572			NA	T	ETV4	prostate								7	11					0	0	0.001984	0	0
KLK4	9622	broad.mit.edu	37	19	51410274	51410274	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51410274C>A	uc002pua.1	-	5	681	c.681G>T	c.(679-681)CCG>CCT	p.P227P	KLK4_uc002pty.1_3'UTR|KLK4_uc002ptz.1_RNA|KLK4_uc002pub.1_Silent_p.P132P|KLK4_uc002puc.1_RNA	NM_004917	NP_004908	Q9Y5K2	KLK4_HUMAN	kallikrein-related peptidase 4 preproprotein	227	Peptidase S1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00624)|GBM - Glioblastoma multiforme(134;0.00878)		CTTGGCCACACGGGGCTTTTC	0.547			NA											18	56					1.37522e-17	2.46352e-17	0.007413	1	0
SIGLECP3	284367	broad.mit.edu	37	19	51670964	51670964	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51670964A>G	uc010ycv.1	+	2	318	c.308A>G	c.(307-309)AAA>AGA	p.K103R	SIGLECP3_uc010ycu.1_Missense_Mutation_p.K103R|SIGLECP3_uc002pvy.3_Missense_Mutation_p.K103R|SIGLECP3_uc002pvz.3_Missense_Mutation_p.K103R					SubName: Full=cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33;												0						TCAACTCAAAAAGTGCAGAAG	0.557			NA											4	10					0	0	0.009096	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51918453	51918453	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51918453G>T	uc002pwo.2	-	7	1928	c.1312C>A	c.(1312-1314)CTC>ATC	p.L438I	SIGLEC10_uc002pwp.2_Missense_Mutation_p.L380I|SIGLEC10_uc002pwq.2_Missense_Mutation_p.L380I|SIGLEC10_uc002pwr.2_Missense_Mutation_p.L438I|SIGLEC10_uc010ycy.1_Missense_Mutation_p.L348I|SIGLEC10_uc010ycz.1_Missense_Mutation_p.L390I|SIGLEC10_uc010eow.2_Missense_Mutation_p.L250I|SIGLEC10_uc002pws.1_Missense_Mutation_p.L274I	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	438	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		GAGAGGCTGAGAGAGACGTGC	0.657			NA											13	43					2.27111e-07	3.08624e-07	0.001368	1	0
SIGLEC12	89858	broad.mit.edu	37	19	52004947	52004947	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:52004947C>A	uc002pwx.1	-	1	97	c.41G>T	c.(40-42)GGG>GTG	p.G14V	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	14					cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		CCCCACTCTCCCACAGagcag	0.468			NA											13	10					5.50884e-06	6.94735e-06	0.001368	1	0
ZNF578	147660	broad.mit.edu	37	19	53013861	53013861	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:53013861C>T	uc002pzp.3	+	6	471	c.227C>T	c.(226-228)TCA>TTA	p.S76L		NM_001099694	NP_001093164	Q96N58	ZN578_HUMAN	zinc finger protein 578	Error:Variant_position_missing_in_Q96N58_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00819)|OV - Ovarian serous cystadenocarcinoma(262;0.01)		GAGGTCTTGTCAACAGGGCAA	0.383			NA											23	72					0	0	0.00278	0	0
ZNF813	126017	broad.mit.edu	37	19	53994294	53994294	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:53994294C>A	uc002qbu.2	+	4	936	c.808C>A	c.(808-810)CCT>ACT	p.P270T	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	270					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		TGGGGAGAAACCTTACAGGTG	0.423			NA											3	48					0.004672	0.00503002	0.004672	1	0
LILRA5	353514	broad.mit.edu	37	19	54818758	54818758	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:54818758C>A	uc002qfe.2	-	7	960	c.840G>T	c.(838-840)GGG>GGT	p.G280G	LILRA5_uc002qff.2_Silent_p.G268G	NM_021250	NP_067073	A6NI73	LIRA5_HUMAN	leukocyte immunoglobulin-like receptor subfamily	280	Helical; (Potential).				innate immune response	extracellular region|integral to membrane	receptor activity			upper_aerodigestive_tract(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		ATATCAGAATCCCAAGGACCA	0.532			NA											32	15					1.30988e-24	2.48249e-24	0.010818	1	0
LILRA4	23547	broad.mit.edu	37	19	54850149	54850149	+	Silent	SNP	G	G	T	rs149986255	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:54850149G>T	uc002qfj.2	-	2	115	c.58C>A	c.(58-60)CGG>AGG	p.R20R	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	20						integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		GCCTGCACCCGGGTCCTGGGG	0.622			NA									OREG0003656	type=REGULATORY REGION|Gene=LILRA4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	25	24					2.79863e-10	4.27848e-10	0.004656	1	0
LILRB4	11006	broad.mit.edu	37	19	55175231	55175231	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:55175231C>A	uc002qgp.2	+	3	452	c.90C>A	c.(88-90)ACC>ACA	p.T30T	LILRB4_uc002qgo.1_Silent_p.T71T|LILRB4_uc002qgq.2_Silent_p.T30T|LILRB4_uc010ers.1_Intron|LILRB4_uc002qgr.2_Silent_p.T71T|LILRB4_uc010ert.2_Silent_p.T71T|LILRB4_uc010eru.2_Silent_p.T59T	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	30	Ig-like C2-type 1.|Extracellular (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		CCAAACCCACCCTCTGGGCTG	0.622			NA											12	48					0.00010058	0.000118575	0.001368	1	0
LILRB4	11006	broad.mit.edu	37	19	55177354	55177354	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:55177354C>A	uc002qgp.2	+	7	1208	c.846C>A	c.(844-846)CAC>CAA	p.H282Q	LILRB4_uc002qgq.2_Missense_Mutation_p.H282Q|LILRB4_uc002qgr.2_Missense_Mutation_p.H323Q|LILRB4_uc010ert.2_Missense_Mutation_p.H323Q|LILRB4_uc010eru.2_Missense_Mutation_p.H311Q	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	282	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		tcctccAACACTGGCGTCAGG	0.478			NA											20	18					1.00905e-13	1.69003e-13	0.008871	1	0
NLRP7	199713	broad.mit.edu	37	19	55449504	55449504	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:55449504A>G	uc002qih.3	-	5	2113	c.2037T>C	c.(2035-2037)TTT>TTC	p.F679F	NLRP7_uc002qig.3_Silent_p.F651F|NLRP7_uc002qii.3_Silent_p.F679F|NLRP7_uc010esk.2_Silent_p.F679F|NLRP7_uc010esl.2_Silent_p.F707F	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	679	LRR 2.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TCACTTCCAGAAACTTGAGGT	0.493			NA											14	111					0	0	0.001855	0	0
EPN1	29924	broad.mit.edu	37	19	56203177	56203177	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:56203177G>T	uc002qlw.2	+	7	1162	c.820G>T	c.(820-822)GAC>TAC	p.D274Y	EPN1_uc002qlv.2_Missense_Mutation_p.D249Y|EPN1_uc010etd.2_Missense_Mutation_p.D274Y|EPN1_uc002qlx.2_Missense_Mutation_p.D360Y	NM_001130072	NP_001123544	Q9Y6I3	EPN1_HUMAN	epsin 1 isoform b	274	Ala/Gly/Pro-rich.|1.|8 X 3 AA repeats of [ED]-P-W.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|cytoplasm|nucleus|plasma membrane	lipid binding				0		Colorectal(82;0.00244)|Ovarian(87;0.133)		GBM - Glioblastoma multiforme(193;0.112)		CCCGACCACAGACCCCTGGGG	0.692			NA											25	25					1.55469e-16	2.74453e-16	0.00333	1	0
PEG3	5178	broad.mit.edu	37	19	57325715	57325715	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:57325715T>A	uc002qnu.2	-	7	4446	c.4095A>T	c.(4093-4095)GCA>GCT	p.A1365A	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.A1336A|PEG3_uc002qnv.2_Silent_p.A1365A|PEG3_uc002qnw.2_Silent_p.A1241A|PEG3_uc002qnx.2_Silent_p.A1239A|PEG3_uc010etr.2_Silent_p.A1365A	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1365	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ctgctgcagctgctgctgctT	0.378			NA											13	27					0	0	0.001368	0	0
ZNF460	10794	broad.mit.edu	37	19	57803294	57803294	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:57803294A>G	uc002qog.2	+	3	1707	c.1385A>G	c.(1384-1386)AAC>AGC	p.N462S	ZNF460_uc010ygv.1_Missense_Mutation_p.N421S	NM_006635	NP_006626	Q14592	ZN460_HUMAN	zinc finger protein 460	462	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CGGACCACAAACCTGATTCGA	0.532			NA											14	36					0	0	0.003163	0	0
ZNF416	55659	broad.mit.edu	37	19	58084091	58084091	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:58084091C>A	uc002qpf.2	-	4	1352	c.1181G>T	c.(1180-1182)AGC>ATC	p.S394I	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	394	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		AAGGCTGAAGCTTTGTCTGAA	0.453			NA											26	23					1.5548e-18	2.82087e-18	0.005443	1	0
ZNF416	55659	broad.mit.edu	37	19	58084093	58084093	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:58084093T>G	uc002qpf.2	-	4	1350	c.1179A>C	c.(1177-1179)CAA>CAC	p.Q393H	ZNF547_uc002qpm.3_Intron	NM_017879	NP_060349	Q9BWM5	ZN416_HUMAN	zinc finger protein 416	393	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0259)		GGCTGAAGCTTTGTCTGAATA	0.453			NA											28	21					0	0	0.008361	0	0
ZNF606	80095	broad.mit.edu	37	19	58490783	58490783	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:58490783T>A	uc002qqw.2	-	7	1883	c.1265A>T	c.(1264-1266)CAT>CTT	p.H422L	ZNF606_uc010yhp.1_Missense_Mutation_p.H332L	NM_025027	NP_079303	Q8WXB4	ZN606_HUMAN	zinc finger protein 606	422	C2H2-type 3; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)		TTCTCCAGTATGAGTTTTCTT	0.398			NA											22	11					0	0	0.010504	0	0
ZNF274	10782	broad.mit.edu	37	19	58724056	58724056	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:58724056G>T	uc002qrq.1	+	10	1968	c.1509G>T	c.(1507-1509)GGG>GGT	p.G503G	ZNF274_uc002qrr.1_Silent_p.G471G|ZNF274_uc002qrs.1_Silent_p.G398G|ZNF274_uc010eum.1_Silent_p.G262G	NM_133502	NP_598009	Q96GC6	ZN274_HUMAN	zinc finger protein 274 isoform c	503					viral reproduction	centrosome|nucleolus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Ovarian(87;0.0443)|Breast(46;0.0889)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.215)		TTCACAAGGGGAGCCAAGTTT	0.433			NA											26	53					7.88262e-20	1.45184e-19	0.00333	1	0
MYT1L	23040	broad.mit.edu	37	2	1805558	1805558	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:1805558A>G	uc002qxe.2	-	23	4013	c.3186T>C	c.(3184-3186)GAT>GAC	p.D1062D	MYT1L_uc002qxd.2_Silent_p.D1060D|MYT1L_uc010ewk.2_Silent_p.D58D	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	1062	Potential.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGATTTCTTCATCATTTTCTA	0.294			NA											13	74					0	0	0.001855	0	0
MYT1L	23040	broad.mit.edu	37	2	1891331	1891331	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:1891331G>A	uc002qxe.2	-	17	3398	c.2571C>T	c.(2569-2571)CCC>CCT	p.P857P	MYT1L_uc002qxd.2_Silent_p.P855P|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	857					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCACCTCCCCGGGATACCGTC	0.502			NA											57	50					0	0	0.00361	0	0
ID2	3398	broad.mit.edu	37	2	8823008	8823008	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:8823008C>G	uc010yiu.1	+	4	879	c.384C>G	c.(382-384)GAC>GAG	p.D128E	ID2_uc002qza.2_Missense_Mutation_p.D128E	NM_002166	NP_002157	Q02363	ID2_HUMAN	inhibitor of DNA binding 2	128					cellular senescence|embryonic digestive tract morphogenesis|endodermal digestive tract morphogenesis|epithelial cell differentiation involved in mammary gland alveolus development|mammary gland epithelial cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of neuron differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|neuron fate commitment|positive regulation of blood pressure|positive regulation of cell cycle arrest|positive regulation of smooth muscle cell proliferation|positive regulation of transcription, DNA-dependent	protein complex	protein binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TGTCAAATGACAGCAAAGCAC	0.458			NA											11	69					0	0	0.00245	0	0
MSGN1	343930	broad.mit.edu	37	2	17998011	17998011	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:17998011A>C	uc010yjt.1	+	1	226	c.226A>C	c.(226-228)AGT>CGT	p.S76R		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	76					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CGGGGCCAGCAGTGGGGGCAG	0.637	Melanoma(127;325 1712 14802 40657 49130)		NA											19	36					0	0	0.007413	0	0
APOB	338	broad.mit.edu	37	2	21225603	21225603	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:21225603C>A	uc002red.2	-	29	12819	c.12691G>T	c.(12691-12693)GTA>TTA	p.V4231L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	4231					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCGAATATACCTGGGACAGT	0.418			NA											3	38					0.004672	0.00503002	0.004672	1	0
APOB	338	broad.mit.edu	37	2	21227239	21227239	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:21227239T>G	uc002red.2	-	28	12117	c.11989A>C	c.(11989-11991)ATC>CTC	p.I3997L		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3997					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAGGTGGAGATGCCTTTCTTG	0.502			NA											36	32					0	0	0.004289	0	0
APOB	338	broad.mit.edu	37	2	21228567	21228567	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:21228567C>A	uc002red.2	-	26	11301	c.11173G>T	c.(11173-11175)GTT>TTT	p.V3725F		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3725					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TCAGCCAAAACTTTTACAGGG	0.408			NA											7	73					1.06961e-07	1.48315e-07	0.00308	1	0
APOB	338	broad.mit.edu	37	2	21234458	21234458	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:21234458C>A	uc002red.2	-	26	5410	c.5282G>T	c.(5281-5283)GGC>GTC	p.G1761V		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1761					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CAGTGATAAGCCTGCAATGTT	0.383			NA											54	50					2.76378e-25	5.25552e-25	0.00361	1	0
APOB	338	broad.mit.edu	37	2	21249662	21249662	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:21249662G>T	uc002red.2	-	15	2370	c.2242C>A	c.(2242-2244)CAG>AAG	p.Q748K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	748					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATACACACCTGCTCATGTTTA	0.378			NA											4	52					0.00909568	0.00964006	0.009096	1	0
OTOF	9381	broad.mit.edu	37	2	26691303	26691303	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:26691303C>T	uc002rhk.2	-	33	4190	c.4063G>A	c.(4063-4065)GAG>AAG	p.E1355K	OTOF_uc010yla.1_Missense_Mutation_p.E85K|OTOF_uc002rhh.2_Missense_Mutation_p.E588K|OTOF_uc002rhi.2_Missense_Mutation_p.E665K|OTOF_uc002rhj.2_Missense_Mutation_p.E588K	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	1355	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TCCTCCTTCTCCTCCAAGTCA	0.567	GBM(102;732 1451 20652 24062 31372)		NA											6	38					0	0	0.00308	0	0
C2orf53	339779	broad.mit.edu	37	2	27360302	27360302	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:27360302C>A	uc002rjb.2	-	3	1476	c.896G>T	c.(895-897)GGC>GTC	p.G299V	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	299											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CAGGCGGAGGCCGAAGCCGAT	0.657			NA											7	22					0.00198382	0.00217721	0.001984	1	0
SPAST	6683	broad.mit.edu	37	2	32361981	32361981	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:32361981G>T	uc002roc.2	+	11	1578	c.1357G>T	c.(1357-1359)GGG>TGG	p.G453W	SPAST_uc002rod.2_Missense_Mutation_p.G421W	NM_014946	NP_055761	Q9UBP0	SPAST_HUMAN	spastin isoform 1	453	Sufficient for microtubule severing.				cell cycle|cell death|cell differentiation|cytokinesis, completion of separation|ER to Golgi vesicle-mediated transport|microtubule bundle formation|microtubule severing|nervous system development|protein hexamerization|protein homooligomerization	endoplasmic reticulum|endosome|integral to membrane|microtubule|microtubule organizing center|nucleus|perinuclear region of cytoplasm|spindle	alpha-tubulin binding|ATP binding|beta-tubulin binding|microtubule binding|microtubule-severing ATPase activity			breast(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					AAGAAGAGAAGGGGAGCACGA	0.333			NA											6	16					0.00307968	0.00336253	0.00308	1	0
HEATR5B	54497	broad.mit.edu	37	2	37304053	37304053	+	Splice_Site	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:37304053C>A	uc002rpp.1	-	4	543	c.447_splice	c.e4+1	p.E149_splice		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B								binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GTAAAACTTACCTCTGCACTT	0.358			NA											21	7					8.10497e-08	1.13217e-07	0.010504	1	0
CYP1B1	1545	broad.mit.edu	37	2	38301699	38301699	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:38301699C>A	uc002rqo.2	-	3	1236	c.833G>T	c.(832-834)AGG>ATG	p.R278M		NM_000104	NP_000095	Q16678	CP1B1_HUMAN	cytochrome P450, family 1, subfamily B,	278					visual perception|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|protein binding			ovary(1)|central_nervous_system(1)	2		all_hematologic(82;0.21)			Estrone(DB00655)	TTCGCAGTGCCTCAAGAACTT	0.512			NA											3	16					6.4e-05	7.65288e-05	0.004672	1	0
KLRAQ1	129285	broad.mit.edu	37	2	48687233	48687233	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:48687233G>T	uc002rwm.2	+	6	726	c.541_splice	c.e6-1	p.V181_splice	KLRAQ1_uc002rwi.1_Splice_Site_p.V181_splice|KLRAQ1_uc002rwj.2_Splice_Site_p.V181_splice|KLRAQ1_uc002rwl.2_Splice_Site_p.V135_splice|KLRAQ1_uc002rwk.2_Splice_Site_p.V181_splice|KLRAQ1_uc010yok.1_Splice_Site_p.V181_splice	NM_001135629	NP_001129101	Q6ZMI0	KLRAQ_HUMAN	KLRAQ motif containing 1 isoform 1											ovary(1)	1						CTGAAATTCAGGTGAAATCTC	0.433			NA											6	6					0.00116845	0.00129404	0.001168	1	0
FSHR	2492	broad.mit.edu	37	2	49216144	49216144	+	Missense_Mutation	SNP	C	C	A	rs142383710	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:49216144C>A	uc002rww.2	-	6	570	c.496G>T	c.(496-498)GTG>TTG	p.V166L	FSHR_uc002rwx.2_Missense_Mutation_p.V166L|FSHR_uc010fbn.2_Intron|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	166	LRR 5.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CTCAGCCCCACGAAAGAATTT	0.338			NA							Gonadal_Dysgenesis_46_XX				12	14					6.40141e-05	7.65288e-05	0.010729	1	0
NRXN1	9378	broad.mit.edu	37	2	50850623	50850623	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:50850623C>A	uc010fbq.2	-	6	2539	c.1062G>T	c.(1060-1062)ATG>ATT	p.M354I	NRXN1_uc002rxb.3_Missense_Mutation_p.M1I|NRXN1_uc002rxe.3_Missense_Mutation_p.M321I|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			CAGTGTGAAGCATCAGTCCAT	0.433			NA											35	66					6.90743e-12	1.10259e-11	0.003755	1	0
SPTBN1	6711	broad.mit.edu	37	2	54859864	54859864	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:54859864C>G	uc002rxu.2	+	17	3975	c.3726C>G	c.(3724-3726)AAC>AAG	p.N1242K	SPTBN1_uc002rxx.2_Missense_Mutation_p.N1229K	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1242	Spectrin 9.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			GGAACATCAACTCAGATCGCA	0.507			NA											17	20					0	0	0.007413	0	0
SPTBN1	6711	broad.mit.edu	37	2	54874368	54874368	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:54874368G>A	uc002rxu.2	+	24	5216	c.4967G>A	c.(4966-4968)CGG>CAG	p.R1656Q	SPTBN1_uc002rxx.2_Missense_Mutation_p.R1643Q	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	1656	Interaction with ANK2.|Spectrin 13.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			AAGACCAGCCGGGCCCTGGTG	0.562			NA											6	58					0	0	0.00308	0	0
FANCL	55120	broad.mit.edu	37	2	58431271	58431271	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:58431271C>T	uc002rzw.3	-	6	532	c.465G>A	c.(463-465)AAG>AAA	p.K155K	FANCL_uc002rzx.3_Silent_p.K155K|FANCL_uc010fce.2_Silent_p.K155K|FANCL_uc010fcf.1_Silent_p.K96K	NM_018062	NP_060532	Q9NW38	FANCL_HUMAN	Fanconi anemia, complementation group L isoform	155					DNA repair	cytoplasm|nucleoplasm	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						ATACCTTTGCCTTCAACTTGA	0.393			NA						Involved_in_tolerance_or_repair_of_DNA_crosslinks	FanconAnemia				15	75					0	0	0.004007	0	0
LRRTM1	347730	broad.mit.edu	37	2	80530833	80530833	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:80530833C>A	uc002sok.1	-	2	382	c.112G>T	c.(112-114)GGG>TGG	p.G38W	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	38	LRRNT.|Lumenal (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						TGCGGGCACCCGCTGGGGGCG	0.697			NA								HNSCC(69;0.2)			16	15					5.3912e-06	6.83959e-06	0.006122	1	0
FUNDC2P2	388965	broad.mit.edu	37	2	84517949	84517949	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:84517949G>A	uc010ffz.1	+	1	144	c.7G>A	c.(7-9)GCG>ACG	p.A3T		NR_003663				RecName: Full=FUN14 domain-containing protein 2; AltName: Full=Hepatitis C virus core-binding protein 6; AltName: Full=Cervical cancer proto-oncogene 3 protein;          Short=HCC-3;												0						CGAAATGGCCGCGTCCAGTCA	0.587			NA											4	11					0	0	0.009096	0	0
VAMP5	10791	broad.mit.edu	37	2	85818874	85818874	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:85818874G>C	uc002spu.1	+	2	113	c.30G>C	c.(28-30)CAG>CAC	p.Q10H		NM_006634	NP_006625	O95183	VAMP5_HUMAN	vesicle-associated membrane protein 5	10	v-SNARE coiled-coil homology.|Cytoplasmic (Potential).				cell differentiation|vesicle-mediated transport	endomembrane system					0						AGCGGTGCCAGCAGCAGGCGA	0.602			NA											4	46					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	2	89533966	89533966	+	Splice_Site	SNP	C	C	T	rs149955575	by1000genomes	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:89533966C>T	uc010ytr.1	-	16		c.1929_splice	c.e16-1		uc002stl.2_Intron					Parts of antibodies, mostly variable regions.												NA						TCACAATATCCGCACTGGATC	0.458			NA											3	20					0	0	0.009096	0	0
NPAS2	4862	broad.mit.edu	37	2	101609882	101609882	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:101609882G>T	uc002tap.1	+	20	2471	c.2185G>T	c.(2185-2187)GTC>TTC	p.V729F	NPAS2_uc010yvt.1_Missense_Mutation_p.V794F|NPAS2_uc010fit.1_Missense_Mutation_p.R146L	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	729					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CCCGATGCCCGTCCTGCTGAT	0.652			NA											20	22					1.01871e-10	1.57581e-10	0.008871	1	0
IL1RL1	9173	broad.mit.edu	37	2	102956659	102956659	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:102956659C>A	uc002tbu.1	+	4	645	c.374C>A	c.(373-375)TCA>TAA	p.S125*	IL1RL1_uc010ywa.1_Nonsense_Mutation_p.S8*|IL18R1_uc002tbw.3_Intron|IL1RL1_uc002tbv.2_Nonsense_Mutation_p.S125*	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	125	Ig-like C2-type 2.|Extracellular (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GTATCTGGATCAGAAAAAAAT	0.348			NA											3	18					0.004672	0.00503002	0.004672	1	0
IL1RL1	9173	broad.mit.edu	37	2	102965695	102965695	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:102965695T>A	uc002tbu.1	+	10	1545	c.1274T>A	c.(1273-1275)CTA>CAA	p.L425Q	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	425	TIR.|Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						AGAGATATGCTACCTGGAGAA	0.413			NA											15	16					0	0	0.003163	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107423348	107423348	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:107423348G>T	uc002tdq.2	-	6	1495	c.1376C>A	c.(1375-1377)TCC>TAC	p.S459Y	ST6GAL2_uc002tdr.2_Missense_Mutation_p.S459Y	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	459	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CTGCCGCACGGATGGGATATA	0.507			NA											14	17					9.31168e-06	1.16912e-05	0.001855	1	0
DDX18	8886	broad.mit.edu	37	2	118579481	118579481	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:118579481G>T	uc002tlh.1	+	6	894	c.795G>T	c.(793-795)ATG>ATT	p.M265I		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	265	Helicase ATP-binding.						ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						AACTAGCCATGCAAACCTTTG	0.438			NA											11	53					6.40141e-05	7.65288e-05	0.010729	1	0
CLASP1	23332	broad.mit.edu	37	2	122122783	122122783	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:122122783T>C	uc002tnc.2	-	35	4354	c.3964A>G	c.(3964-3966)AAG>GAG	p.K1322E	CLASP1_uc010yyv.1_Missense_Mutation_p.K368E|CLASP1_uc002tmz.2_Missense_Mutation_p.K407E|CLASP1_uc002tna.2_Missense_Mutation_p.K368E|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.K1263E|CLASP1_uc010yza.1_Missense_Mutation_p.K1255E|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Missense_Mutation_p.K158E|CLASP1_uc002tnf.2_Missense_Mutation_p.K224E	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1322	Localization to kinetochores.|Interaction with PHLDB2 and RSN.|Potential.|Interaction with CLIP2 (By similarity).				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					AGGGCTCCCTTCCGTTCCTCC	0.567			NA											4	13					0	0	0.009096	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521572	125521572	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:125521572T>A	uc002tno.2	+	16	2742	c.2378T>A	c.(2377-2379)GTC>GAC	p.V793D	CNTNAP5_uc010flu.2_Missense_Mutation_p.V794D	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	793	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TGGAACGCCGTCTCATTTTAT	0.423			NA											34	55					0	0	0.004289	0	0
GYPC	2995	broad.mit.edu	37	2	127453522	127453522	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:127453522G>T	uc002tnq.2	+	4	347	c.191G>T	c.(190-192)GGT>GTT	p.G64V	GYPC_uc002tnr.2_Missense_Mutation_p.G45V|GYPC_uc010flv.2_RNA	NM_002101	NP_002092	P04921	GLPC_HUMAN	glycophorin C isoform 1	64	Helical; Signal-anchor for type III membrane protein.					cortical cytoskeleton|integral to plasma membrane	protein binding			central_nervous_system(1)	1	Colorectal(110;0.0533)			BRCA - Breast invasive adenocarcinoma(221;0.075)		CCACCTGCAGGTGTGATTGCT	0.587	Melanoma(110;806 1600 6704 9981 33404)		NA											9	94					3.86212e-05	4.67636e-05	0.008291	1	0
CYP27C1	339761	broad.mit.edu	37	2	127957001	127957001	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:127957001T>C	uc002tod.2	-	4	634	c.503A>G	c.(502-504)CAG>CGG	p.Q168R		NM_001001665	NP_001001665	Q4G0S4	C27C1_HUMAN	cytochrome P450, family 27, subfamily C,	168						membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen				0	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.071)		GTAGATCTCCTGCAGCGTCAG	0.577			NA											31	54					0	0	0.009535	0	0
MYO7B	4648	broad.mit.edu	37	2	128331623	128331623	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:128331623C>T	uc002top.2	+	7	774	c.721C>T	c.(721-723)CGG>TGG	p.R241W		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	241	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GGAGAAGTCCCGGGTCTGCCG	0.607			NA											25	98					0	0	0.005443	0	0
MYO7B	4648	broad.mit.edu	37	2	128335809	128335809	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:128335809C>A	uc002top.2	+	9	1004	c.951C>A	c.(949-951)GAC>GAA	p.D317E		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	317	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		AGAGCTGGGACGTCATCAAGC	0.607			NA											6	33					3.59834e-05	4.39136e-05	0.001168	1	0
GPR17	2840	broad.mit.edu	37	2	128408417	128408417	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:128408417C>A	uc010yzn.1	+	4	803	c.192C>A	c.(190-192)TCC>TCA	p.S64S	LIMS2_uc002tow.2_5'Flank|LIMS2_uc002tox.2_Intron|LIMS2_uc010fmb.2_Intron|LIMS2_uc002toy.2_Intron|LIMS2_uc010yzm.1_Intron|LIMS2_uc002tpa.2_Intron|LIMS2_uc002toz.2_Intron|LIMS2_uc002tpb.2_Intron|GPR17_uc002tpc.2_Silent_p.S64S|GPR17_uc010yzo.1_Silent_p.S36S|GPR17_uc002tpd.2_Silent_p.S36S	NM_001161415	NP_001154887	Q13304	GPR17_HUMAN	G protein-coupled receptor 17 isoform a	64	Extracellular (Potential).					integral to plasma membrane	chemokine receptor activity|purinergic nucleotide receptor activity, G-protein coupled				0	Colorectal(110;0.1)	Ovarian(717;0.15)		BRCA - Breast invasive adenocarcinoma(221;0.0677)		tgttcgcctccttctaccttc	0.194			NA									OREG0014966	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	58					6.44725e-10	9.7166e-10	0.002299	1	0
YSK4	80122	broad.mit.edu	37	2	135744697	135744697	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:135744697G>T	uc002tue.1	-	7	1776	c.1745C>A	c.(1744-1746)CCC>CAC	p.P582H	YSK4_uc002tuf.1_Intron|YSK4_uc010fnc.1_Intron|YSK4_uc010fnd.1_Missense_Mutation_p.P469H|YSK4_uc010zbg.1_Intron|YSK4_uc002tuh.3_Missense_Mutation_p.P310H|YSK4_uc002tui.3_Missense_Mutation_p.P599H	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	582							ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		CCAAGGCCTGGGGTCCACAAG	0.428			NA											12	57					1.08611e-07	1.49384e-07	0.010729	1	0
MCM6	4175	broad.mit.edu	37	2	136624258	136624258	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:136624258C>A	uc002tuw.2	-	5	732	c.656G>T	c.(655-657)AGT>ATT	p.S219I		NM_005915	NP_005906	Q14566	MCM6_HUMAN	minichromosome maintenance complex component 6	219					cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|identical protein binding				0				BRCA - Breast invasive adenocarcinoma(221;0.166)	Atorvastatin(DB01076)	GCGGGGGATACTCCCTCGAGG	0.448	Ovarian(196;141 2104 8848 24991 25939)		NA											4	54					0.00024832	0.000286393	0.009096	1	0
LRP1B	53353	broad.mit.edu	37	2	141108558	141108558	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:141108558A>T	uc002tvj.1	-	77	12672	c.11700T>A	c.(11698-11700)GGT>GGA	p.G3900G		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3900	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GATATATAAAACCCAGGATAT	0.284	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			7	52					0	0	0.00308	0	0
LRP1B	53353	broad.mit.edu	37	2	141459833	141459833	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:141459833C>A	uc002tvj.1	-	39	7151	c.6179G>T	c.(6178-6180)CGC>CTC	p.R2060L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2060	Extracellular (Potential).|LDL-receptor class B 22.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTTGTCTGTGCGAGCATCACA	0.378	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			10	56					3.86212e-05	4.67636e-05	0.008291	1	0
LRP1B	53353	broad.mit.edu	37	2	141707882	141707882	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:141707882G>A	uc002tvj.1	-	20	4030	c.3058C>T	c.(3058-3060)CCA>TCA	p.P1020S	LRP1B_uc010fnl.1_Missense_Mutation_p.P202S	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1020	Extracellular (Potential).|LDL-receptor class A 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CAGTGGCCTGGGATGCATCTG	0.453	Colon(99;50 2074 2507 20106)		NA								TSP Lung(27;0.18)			6	14					0	0	0.001168	0	0
GTDC1	79712	broad.mit.edu	37	2	144966327	144966327	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:144966327C>A	uc002tvp.2	-	4	301	c.22G>T	c.(22-24)GCA>TCA	p.A8S	GTDC1_uc002tvo.2_Missense_Mutation_p.A8S|GTDC1_uc002tvq.2_Missense_Mutation_p.A8S|GTDC1_uc002tvr.2_Missense_Mutation_p.A8S|GTDC1_uc010fnn.2_Missense_Mutation_p.A8S|GTDC1_uc002tvs.2_5'UTR|GTDC1_uc010fno.2_Intron|GTDC1_uc002tvt.1_Missense_Mutation_p.A8S	NM_001006636	NP_001006637	Q4AE62	GTDC1_HUMAN	glycosyltransferase-like domain containing 1	8					biosynthetic process		transferase activity, transferring glycosyl groups			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.0914)		CCATAGAATGCTTCAATGATG	0.368			NA											9	27					1.76689e-08	2.52626e-08	0.006214	1	0
PABPC1P2	728773	broad.mit.edu	37	2	147346256	147346256	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:147346256G>T	uc002twf.3	+	1	1632	c.716G>T	c.(715-717)CGT>CTT	p.R239L		NR_026904				RecName: Full=Putative protein PABPC1-like; AltName: Full=Polyadenylate-binding protein pseudogene 2;												0						ACCCAGAACCGTGCTGCATAC	0.512			NA											4	50					0.00024832	0.000286393	0.009096	1	0
EPC2	26122	broad.mit.edu	37	2	149522656	149522656	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:149522656A>C	uc010zbt.1	+	7	1108	c.1081A>C	c.(1081-1083)AAT>CAT	p.N361H		NM_015630	NP_056445	Q52LR7	EPC2_HUMAN	enhancer of polycomb homolog 2	361					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(1)|breast(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.0516)		GCCTGTGATCAATAAGAGTGA	0.363			NA											5	38					0	0	0.001168	0	0
KIF5C	3800	broad.mit.edu	37	2	149847596	149847596	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:149847596G>T	uc010zbu.1	+	16	2157	c.1789G>T	c.(1789-1791)GAG>TAG	p.E597*	KIF5C_uc002tws.1_RNA|KIF5C_uc002twt.2_Nonsense_Mutation_p.E149*	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	597					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		GATGAAGTCAGAGGTCAAGTC	0.547			NA											12	16					2.27111e-07	3.08624e-07	0.001368	1	0
NEB	4703	broad.mit.edu	37	2	152348631	152348631	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:152348631T>A	uc010fnx.2	-	145	19661	c.19470A>T	c.(19468-19470)CAA>CAT	p.Q6490H	NEB_uc002txr.2_Missense_Mutation_p.Q2820H|RIF1_uc002txp.2_Intron|NEB_uc010zbz.1_Missense_Mutation_p.Q259H|NEB_uc002txq.2_Missense_Mutation_p.Q369H|NEB_uc010zca.1_Missense_Mutation_p.Q321H|NEB_uc010zcb.1_Missense_Mutation_p.Q259H	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	6490	Interaction with SVIL.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TCTCCTGATCTTGGTCATTCC	0.428			NA											17	197					0	0	0.00499	0	0
NEB	4703	broad.mit.edu	37	2	152422283	152422283	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:152422283G>C	uc010fnx.2	-	87	13296	c.13105C>G	c.(13105-13107)CTG>GTG	p.L4369V	NEB_uc002txr.2_Missense_Mutation_p.L792V	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4369	Nebulin 120.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		ACAGAATCCAGTGGGATCCAG	0.478			NA											8	8					0	0	0.004482	0	0
NEB	4703	broad.mit.edu	37	2	152507197	152507197	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:152507197T>A	uc010fnx.2	-	53	7309	c.7118A>T	c.(7117-7119)CAG>CTG	p.Q2373L		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2373	Nebulin 63.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		AACCAACTCCTGACACTTCTT	0.453			NA											33	332					0	0	0.010818	0	0
PLA2R1	22925	broad.mit.edu	37	2	160884857	160884857	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:160884857G>T	uc002ube.1	-	6	1178	c.971C>A	c.(970-972)CCA>CAA	p.P324Q	PLA2R1_uc010zcp.1_Missense_Mutation_p.P324Q|PLA2R1_uc002ubf.2_Missense_Mutation_p.P324Q	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	324	Extracellular (Potential).|C-type lectin 1.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						TTCAACAAATGGCTCAAAATT	0.353			NA											5	68					1.024e-07	1.42689e-07	0.000602	1	0
GRB14	2888	broad.mit.edu	37	2	165353989	165353989	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:165353989T>C	uc002ucl.2	-	10	1657	c.1116A>G	c.(1114-1116)TCA>TCG	p.S372S	GRB14_uc010zcv.1_Silent_p.S285S|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	372					blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						GGGAATTCTCTGATATACTTC	0.353			NA											12	78					0	0	0.001368	0	0
SCN3A	6328	broad.mit.edu	37	2	166026976	166026976	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:166026976G>A	uc002ucx.2	-	4	839	c.347C>T	c.(346-348)CCT>CTT	p.P116L	SCN3A_uc002ucy.2_Missense_Mutation_p.P116L|SCN3A_uc002ucz.2_Missense_Mutation_p.P116L|SCN3A_uc002uda.1_5'Flank|SCN3A_uc002udb.1_5'Flank	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	116						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TTTCCTAACAGGGTTTAGTGG	0.313			NA											6	43					0	0	0.001168	0	0
SCN2A	6326	broad.mit.edu	37	2	166245987	166245987	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:166245987G>A	uc002udc.2	+	27	5961	c.5671G>A	c.(5671-5673)GTC>ATC	p.V1891I	SCN2A_uc002udd.2_Missense_Mutation_p.V1891I|SCN2A_uc002ude.2_Missense_Mutation_p.V1891I	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	1891					myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	CCCCTCCAAAGTCTCTTATGA	0.453			NA											12	49					0	0	0.010729	0	0
CSRNP3	80034	broad.mit.edu	37	2	166533059	166533059	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:166533059T>A	uc002udf.2	+	6	1022	c.646T>A	c.(646-648)TGC>AGC	p.C216S	CSRNP3_uc002udg.2_Missense_Mutation_p.C216S	NM_024969	NP_079245	Q8WYN3	CSRN3_HUMAN	cysteine-serine-rich nuclear protein 3	216	Cys-rich.				apoptosis|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|large_intestine(1)|skin(1)	5						TGGCTGTGACTGCCGAGTGTT	0.542			NA											9	78					0	0	0.004482	0	0
XIRP2	129446	broad.mit.edu	37	2	168099387	168099387	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:168099387G>A	uc002udx.2	+	8	1503	c.1485G>A	c.(1483-1485)TTG>TTA	p.L495L	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.L320L|XIRP2_uc010fpq.2_Silent_p.L273L|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	320					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAAGAAATTTGTATGAATTAA	0.363			NA											6	30					0	0	0.001984	0	0
XIRP2	129446	broad.mit.edu	37	2	168100659	168100659	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:168100659A>C	uc002udx.2	+	8	2775	c.2757A>C	c.(2755-2757)CAA>CAC	p.Q919H	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.Q744H|XIRP2_uc010fpq.2_Missense_Mutation_p.Q697H|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	744	Xin 11.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TTGAAACCCAACCTCTGGAAG	0.363			NA											3	34					0	0	0.004672	0	0
XIRP2	129446	broad.mit.edu	37	2	168102030	168102030	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:168102030A>G	uc002udx.2	+	8	4146	c.4128A>G	c.(4126-4128)CAA>CAG	p.Q1376Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.Q1201Q|XIRP2_uc010fpq.2_Silent_p.Q1154Q|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1201					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CTGTCACACAAGAAGACATTC	0.363			NA											9	33					0	0	0.004482	0	0
XIRP2	129446	broad.mit.edu	37	2	168107039	168107039	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:168107039C>A	uc002udx.2	+	8	9155	c.9137C>A	c.(9136-9138)CCC>CAC	p.P3046H	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2871H|XIRP2_uc010fpq.2_Missense_Mutation_p.P2824H|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2871					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GGAAATAAACCCACTAGTCTT	0.333			NA											15	82					1.45105e-14	2.49928e-14	0.006122	1	0
XIRP2	129446	broad.mit.edu	37	2	168107258	168107258	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:168107258C>A	uc002udx.2	+	8	9374	c.9356C>A	c.(9355-9357)CCG>CAG	p.P3119Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2944Q|XIRP2_uc010fpq.2_Missense_Mutation_p.P2897Q|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2944					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						ACACGCCCACCGTCACCAACT	0.423			NA											31	30					3.17567e-06	4.0806e-06	0.008361	1	0
LRP2	4036	broad.mit.edu	37	2	170063602	170063602	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:170063602C>T	uc002ues.2	-	39	6841	c.6628G>A	c.(6628-6630)GGG>AGG	p.G2210R		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	2210	LDL-receptor class B 22.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	GGTCTCTGCCCATAGTCAGCC	0.493			NA											24	168					0	0	0.004656	0	0
LRP2	4036	broad.mit.edu	37	2	170151180	170151180	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:170151180G>A	uc002ues.2	-	5	681	c.468C>T	c.(466-468)GCC>GCT	p.A156A	LRP2_uc010zdf.1_Silent_p.A156A	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	156	LDL-receptor class A 4.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGTTATAGCAGGCCCCATTGT	0.333			NA											10	56					0	0	0.006214	0	0
PPIG	9360	broad.mit.edu	37	2	170493265	170493265	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:170493265A>G	uc002uez.2	+	14	1717	c.1497A>G	c.(1495-1497)GAA>GAG	p.E499E	PPIG_uc010fpx.2_Silent_p.E484E|PPIG_uc010fpy.2_Silent_p.E492E|PPIG_uc002ufb.2_Silent_p.E499E|PPIG_uc002ufd.2_Silent_p.E496E	NM_004792	NP_004783	Q13427	PPIG_HUMAN	peptidylprolyl isomerase G	499					protein folding|RNA splicing	nuclear matrix|nuclear speck	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|central_nervous_system(1)	3					L-Proline(DB00172)	ATGTTAAAGAAAAAGAAAAGC	0.323			NA											5	33					0	0	0.001168	0	0
C2orf77	129881	broad.mit.edu	37	2	170502615	170502615	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:170502615A>T	uc002ufe.2	-	9	1489	c.1395T>A	c.(1393-1395)GCT>GCA	p.A465A		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	465	Potential.										0						TCTCCTTTTCAGCCACAAGAG	0.348			NA											45	277					0	0	0.00361	0	0
WIPF1	7456	broad.mit.edu	37	2	175436472	175436472	+	Nonsense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:175436472G>C	uc002uiy.2	-	6	1393	c.1061C>G	c.(1060-1062)TCA>TGA	p.S354*	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Nonsense_Mutation_p.S354*|WIPF1_uc010fqt.1_Nonsense_Mutation_p.S354*|WIPF1_uc002ujc.1_Nonsense_Mutation_p.S354*|WIPF1_uc002uiz.2_Nonsense_Mutation_p.S354*|WIPF1_uc002ujb.1_Nonsense_Mutation_p.S354*|WIPF1_uc010zep.1_Nonsense_Mutation_p.S354*	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	354	XRSGPXPPXP motif 1.|Pro-rich.				actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						AAGAGGACCTGAACGTCCTGG	0.612			NA											27	117					0	0	0.003954	0	0
CHRNA1	1134	broad.mit.edu	37	2	175612944	175612944	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:175612944G>A	uc002ujd.2	-	10	1435	c.1357C>T	c.(1357-1359)CAC>TAC	p.H453Y	uc002uiw.2_Intron|CHRNA1_uc002uje.2_Missense_Mutation_p.H428Y	NM_001039523	NP_001034612	P02708	ACHA_HUMAN	nicotinic cholinergic receptor alpha 1 isoform a	453	Cytoplasmic.				muscle cell homeostasis|neuromuscular junction development|neuromuscular process|neuromuscular synaptic transmission|neuron homeostasis|regulation of action potential in neuron|skeletal muscle contraction|skeletal muscle tissue growth	cell junction|cell surface|neuromuscular junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(2)|central_nervous_system(1)|skin(1)	4						AGGAGTATGTGGTCCATCACC	0.488			NA											13	54					0	0	0.001368	0	0
HOXD9	3235	broad.mit.edu	37	2	176988789	176988789	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:176988789C>T	uc010zex.1	+	2	1029	c.945C>T	c.(943-945)CGC>CGT	p.R315R		NM_014213	NP_055028	P28356	HXD9_HUMAN	homeobox D9	315	Homeobox.					nucleus	sequence-specific DNA binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.195)	Colorectal(32;0.0226)|READ - Rectum adenocarcinoma(9;0.0556)		GGGACCGGCGCTACGAGGTGG	0.502	GBM(47;924 952 7959 9248 12176)		NA											26	89					0	0	0.005443	0	0
HNRNPA3	220988	broad.mit.edu	37	2	178081299	178081299	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:178081299C>T	uc002ulb.1	+	5	728	c.622C>T	c.(622-624)CAG>TAG	p.Q208*	HNRNPA3_uc002ulc.1_Nonsense_Mutation_p.Q208*|HNRNPA3_uc002uld.2_Nonsense_Mutation_p.Q186*|HNRNPA3_uc002ule.2_5'Flank	NM_194247	NP_919223	P51991	ROA3_HUMAN	heterogeneous nuclear ribonucleoprotein A3	208						catalytic step 2 spliceosome|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(2)	2						ACAAGAGATGCAGTCTGCTGG	0.358			NA											10	156					0	0	0.001368	0	0
AGPS	8540	broad.mit.edu	37	2	178310322	178310322	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:178310322G>T	uc002ull.2	+	8	885	c.838G>T	c.(838-840)GCT>TCT	p.A280S	AGPS_uc010zfb.1_Missense_Mutation_p.A190S	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	280	FAD-binding PCMH-type.				ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			TCATGTAGAGGCTGGCATAAC	0.308			NA											4	35					0.000602214	0.000676645	0.000602	1	0
TTN	7273	broad.mit.edu	37	2	179417574	179417574	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179417574G>T	uc010zfg.1	-	284	82573	c.82349C>A	c.(82348-82350)CCC>CAC	p.P27450H	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P21145H|TTN_uc010zfi.1_Missense_Mutation_p.P21078H|TTN_uc010zfj.1_Missense_Mutation_p.P20953H	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28377							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTTTCACAGGGTTCCCCAAT	0.433			NA											13	64					0.00010058	0.000118575	0.001368	1	0
TTN	7273	broad.mit.edu	37	2	179436920	179436920	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179436920G>A	uc010zfg.1	-	275	66459	c.66235C>T	c.(66235-66237)CGA>TGA	p.R22079*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.R15774*|TTN_uc010zfi.1_Nonsense_Mutation_p.R15707*|TTN_uc010zfj.1_Nonsense_Mutation_p.R15582*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23006							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTAGAATTCGGCTGCCTCCA	0.468			NA											5	68					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179439522	179439522	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179439522G>C	uc010zfg.1	-	275	63857	c.63633C>G	c.(63631-63633)ACC>ACG	p.T21211T	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.T14906T|TTN_uc010zfi.1_Silent_p.T14839T|TTN_uc010zfj.1_Silent_p.T14714T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22138							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTATAACGGTGGTTGCTAACT	0.468			NA											11	83					0	0	0.008291	0	0
TTN	7273	broad.mit.edu	37	2	179441663	179441663	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179441663C>A	uc010zfg.1	-	273	61919	c.61695G>T	c.(61693-61695)ATG>ATT	p.M20565I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.M14260I|TTN_uc010zfi.1_Missense_Mutation_p.M14193I|TTN_uc010zfj.1_Missense_Mutation_p.M14068I|uc002umv.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21492							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTGTCTACCATTTTGACAG	0.393			NA											36	296					1.07121e-22	1.99677e-22	0.006999	1	0
TTN	7273	broad.mit.edu	37	2	179449937	179449937	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179449937G>T	uc010zfg.1	-	258	57054	c.56830C>A	c.(56830-56832)CAC>AAC	p.H18944N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.H12639N|TTN_uc010zfi.1_Missense_Mutation_p.H12572N|TTN_uc010zfj.1_Missense_Mutation_p.H12447N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19871							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGCCAGGTGGCTGGATGTG	0.443			NA											202	223					3.48826e-88	6.80831e-88	0.00361	1	0
TTN	7273	broad.mit.edu	37	2	179453306	179453306	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179453306G>T	uc010zfg.1	-	253	55666	c.55442C>A	c.(55441-55443)CCA>CAA	p.P18481Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P12176Q|TTN_uc010zfi.1_Missense_Mutation_p.P12109Q|TTN_uc010zfj.1_Missense_Mutation_p.P11984Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19408							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGCAAGCTTGGTTCTCCAAT	0.433			NA											44	312					1.89013e-27	3.61035e-27	0.00361	1	0
TTN	7273	broad.mit.edu	37	2	179464352	179464352	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179464352G>C	uc010zfg.1	-	238	48796	c.48572C>G	c.(48571-48573)ACT>AGT	p.T16191S	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T9886S|TTN_uc010zfi.1_Missense_Mutation_p.T9819S|TTN_uc010zfj.1_Missense_Mutation_p.T9694S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	17118							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATAAGCCAGTGTCACTCCT	0.418			NA											23	355					0	0	0.00278	0	0
TTN	7273	broad.mit.edu	37	2	179468686	179468686	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179468686T>A	uc010zfg.1	-	231	47248	c.47024A>T	c.(47023-47025)CAG>CTG	p.Q15675L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.Q9370L|TTN_uc010zfi.1_Missense_Mutation_p.Q9303L|TTN_uc010zfj.1_Missense_Mutation_p.Q9178L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16602							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGCTCTGAACTGGTATTTAAC	0.458			NA											44	258					0	0	0.009718	0	0
TTN	7273	broad.mit.edu	37	2	179474428	179474428	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179474428T>A	uc010zfg.1	-	221	44242	c.44018A>T	c.(44017-44019)AAA>ATA	p.K14673I	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.K8368I|TTN_uc010zfi.1_Missense_Mutation_p.K8301I|TTN_uc010zfj.1_Missense_Mutation_p.K8176I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15600							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTACAGCTTTGGTTGGAGG	0.418			NA											31	262					0	0	0.008361	0	0
TTN	7273	broad.mit.edu	37	2	179482673	179482673	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179482673G>T	uc010zfg.1	-	202	39925	c.39701C>A	c.(39700-39702)TCT>TAT	p.S13234Y	TTN_uc010zfh.1_Missense_Mutation_p.S6929Y|TTN_uc010zfi.1_Missense_Mutation_p.S6862Y|TTN_uc010zfj.1_Missense_Mutation_p.S6737Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14161							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACCTGATAGAAGTCTTGTC	0.468			NA											85	115					1.59228e-47	3.09358e-47	0.00361	1	0
TTN	7273	broad.mit.edu	37	2	179486621	179486621	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179486621C>G	uc010zfg.1	-	193	37548	c.37324G>C	c.(37324-37326)GAA>CAA	p.E12442Q	TTN_uc010zfh.1_Missense_Mutation_p.E6137Q|TTN_uc010zfi.1_Missense_Mutation_p.E6070Q|TTN_uc010zfj.1_Missense_Mutation_p.E5945Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13369							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGGAATATTCAGCTTCATCA	0.393			NA											11	63					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179499928	179499928	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179499928T>C	uc010zfg.1	-	177	34508	c.34284A>G	c.(34282-34284)CAA>CAG	p.Q11428Q	TTN_uc010zfh.1_Silent_p.Q5123Q|TTN_uc010zfi.1_Silent_p.Q5056Q|TTN_uc010zfj.1_Silent_p.Q4931Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12355							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGTTTCCATTGTCCAGGAA	0.373			NA											13	154					0	0	0.00245	0	0
TTN	7273	broad.mit.edu	37	2	179500696	179500696	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179500696C>A	uc010zfg.1	-	175	34122	c.33898G>T	c.(33898-33900)GTA>TTA	p.V11300L	TTN_uc010zfh.1_Missense_Mutation_p.V4995L|TTN_uc010zfi.1_Missense_Mutation_p.V4928L|TTN_uc010zfj.1_Missense_Mutation_p.V4803L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12227							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACCTACTACTTTTACGCAA	0.423			NA											17	169					3.41278e-10	5.20335e-10	0.00499	1	0
TTN	7273	broad.mit.edu	37	2	179501527	179501527	+	Splice_Site	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179501527C>T	uc010zfg.1	-	174	33448	c.33224_splice	c.e174-1	p.G11075_splice	TTN_uc010zfh.1_Splice_Site_p.G4770_splice|TTN_uc010zfi.1_Splice_Site_p.G4703_splice|TTN_uc010zfj.1_Splice_Site_p.G4578_splice|TTN_uc010fre.1_Intron	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A								ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGGTACACCTAATTCAAAG	0.433			NA											6	54					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179516249	179516249	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179516249T>A	uc010zfg.1	-	161	32400	c.32176A>T	c.(32176-32178)AAG>TAG	p.K10726*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc010fre.1_Intron|TTN_uc002umw.1_RNA|TTN_uc002umx.1_5'UTR	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	11653							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACAACCTCCTTGGGCACCTCG	0.443			NA											4	108					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179592456	179592456	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179592456C>A	uc010zfg.1	-	65	16341	c.16117G>T	c.(16117-16119)GGT>TGT	p.G5373C	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G2034C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6300							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATTTAGGACCTGAGACAAGT	0.393			NA											43	171					7.05121e-23	1.32162e-22	0.010771	1	0
TTN	7273	broad.mit.edu	37	2	179659182	179659182	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179659182G>T	uc010zfg.1	-	8	1566	c.1342C>A	c.(1342-1344)CAG>AAG	p.Q448K	TTN_uc010zfh.1_Missense_Mutation_p.Q448K|TTN_uc010zfi.1_Missense_Mutation_p.Q448K|TTN_uc010zfj.1_Missense_Mutation_p.Q448K|TTN_uc002unb.2_Missense_Mutation_p.Q448K|TTN_uc010frg.1_Missense_Mutation_p.Q122K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	448							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAGCAGTCTGCTCTACAGCG	0.552			NA											21	101					4.54149e-19	8.28383e-19	0.002299	1	0
CCDC141	285025	broad.mit.edu	37	2	179714841	179714841	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:179714841T>A	uc002unf.1	-	11	1624	c.1567A>T	c.(1567-1569)AAA>TAA	p.K523*		NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	523							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			AGAACCTCTTTGTGTTTTGTC	0.358			NA											12	32					0	0	0.001855	0	0
ITGA4	3676	broad.mit.edu	37	2	182322569	182322569	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:182322569C>T	uc002unu.2	+	1	951	c.188C>T	c.(187-189)GCG>GTG	p.A63V	ITGA4_uc002unt.2_Missense_Mutation_p.A63V|ITGA4_uc010zfl.1_Missense_Mutation_p.A63V	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	63	FG-GAP 1.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AGCCACGGGGCGAACCGATGG	0.627			NA											4	12					0	0	0.009096	0	0
NUP35	129401	broad.mit.edu	37	2	184024234	184024234	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:184024234G>A	uc002upf.2	+	8	860	c.757G>A	c.(757-759)GAC>AAC	p.D253N	NUP35_uc010zfs.1_Missense_Mutation_p.D235N|NUP35_uc010zft.1_Missense_Mutation_p.D135N|NUP35_uc002upg.2_RNA	NM_138285	NP_612142	Q8NFH5	NUP53_HUMAN	nucleoporin 35kDa	253					carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	intermediate filament cytoskeleton|nuclear membrane|nuclear pore|plasma membrane					0						GGAAAGCAGTGACAGATGTGC	0.348			NA											11	29					0	0	0.001855	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803074	185803074	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:185803074T>C	uc002uph.2	+	4	3545	c.2951T>C	c.(2950-2952)ATG>ACG	p.M984T		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	984						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						CAAGGAAAGATGAATGAGACA	0.418			NA											15	33					0	0	0.003163	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803266	185803266	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:185803266C>T	uc002uph.2	+	4	3737	c.3143C>T	c.(3142-3144)CCA>CTA	p.P1048L		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1048						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						AAAAATGTACCATGTGAGGTC	0.458			NA											3	50					0	0	0.004672	0	0
FAM171B	165215	broad.mit.edu	37	2	187615934	187615934	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:187615934G>C	uc002ups.2	+	5	910	c.798G>C	c.(796-798)AAG>AAC	p.K266N	FAM171B_uc002upr.1_Missense_Mutation_p.K266N	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	266	Extracellular (Potential).			K -> R (in Ref. 4; AAL57220).		integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AAGAACTAAAGGTCAATGGCT	0.353			NA											10	71					0	0	0.006214	0	0
WDR75	84128	broad.mit.edu	37	2	190334125	190334125	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:190334125G>A	uc002uql.1	+	16	1839	c.1779G>A	c.(1777-1779)GAG>GAA	p.E593E	WDR75_uc002uqm.1_Silent_p.E529E|WDR75_uc002uqn.1_Silent_p.E371E|WDR75_uc002uqo.1_Silent_p.E371E	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	593						nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			CTAATTCAGAGAATATTGCTG	0.368			NA											10	27					0	0	0.006214	0	0
ASNSD1	54529	broad.mit.edu	37	2	190535324	190535324	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:190535324C>G	uc002uqt.2	+	6	2238	c.1804C>G	c.(1804-1806)CGG>GGG	p.R602G		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	602					asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			TCTGCCCAAACGGGCCATGCA	0.408			NA											4	52					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	2	190788068	190788068	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:190788068A>G	uc002uro.2	+	1	150	c.7A>G	c.(7-9)AGC>GGC	p.S3G						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;												NA						CACAATGGCCAGCAACGTTAC	0.468			NA											8	39					0	0	0.00308	0	0
SDPR	8436	broad.mit.edu	37	2	192701246	192701246	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:192701246C>A	uc002utb.2	-	2	1011	c.681G>T	c.(679-681)AGG>AGT	p.R227S		NM_004657	NP_004648	O95810	SDPR_HUMAN	serum deprivation response protein	227	Potential.					caveola|cytosol	phosphatidylserine binding|protein binding			ovary(1)|pancreas(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0647)		Phosphatidylserine(DB00144)	TTTTCTCTGCCCTACTTTCTT	0.488			NA											35	73					3.67414e-24	6.9555e-24	0.012213	1	0
HECW2	57520	broad.mit.edu	37	2	197183691	197183691	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:197183691A>T	uc002utm.1	-	9	2106	c.1923T>A	c.(1921-1923)GCT>GCA	p.A641A	HECW2_uc002utl.1_Silent_p.A285A	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	641					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						AGGAGCTGTCAGCGCATTCCA	0.582			NA											6	29					0	0	0.001168	0	0
PGAP1	80055	broad.mit.edu	37	2	197705997	197705997	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:197705997G>A	uc002utw.2	-	27	2844	c.2730C>T	c.(2728-2730)TTC>TTT	p.F910F	PGAP1_uc002utx.2_Silent_p.F736F|PGAP1_uc010fsi.2_Silent_p.F149F	NM_024989	NP_079265	Q75T13	PGAP1_HUMAN	GPI deacylase	910	Helical; (Potential).				attachment of GPI anchor to protein|C-terminal protein lipidation|intracellular protein transport|myo-inositol transport	integral to membrane|intrinsic to endoplasmic reticulum membrane	nuclease activity|phosphoric ester hydrolase activity			ovary(3)|central_nervous_system(1)	4						AAAGAGGAATGAAGACAAAGC	0.378			NA											4	43					0	0	0.009096	0	0
CASP8	841	broad.mit.edu	37	2	202149719	202149719	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:202149719G>T	uc002uxr.1	+	9	1192	c.983G>T	c.(982-984)GGA>GTA	p.G328V	CASP8_uc002uxp.1_Missense_Mutation_p.G345V|CASP8_uc002uxq.1_Missense_Mutation_p.G313V|CASP8_uc002uxt.1_Missense_Mutation_p.G387V|CASP8_uc002uxu.1_RNA|CASP8_uc002uxw.1_Missense_Mutation_p.G313V|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Missense_Mutation_p.G244V	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	328					activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						GGCACTGATGGACAGGAGGCC	0.468	Melanoma(82;831 1348 20716 36952 40159)		NA								HNSCC(4;0.00038)			38	91					1.03484e-13	1.73152e-13	0.005524	1	0
PIKFYVE	200576	broad.mit.edu	37	2	209195317	209195317	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:209195317G>T	uc002vcz.2	+	23	4020	c.3862G>T	c.(3862-3864)GGC>TGC	p.G1288C	PIKFYVE_uc002vcy.1_Missense_Mutation_p.G1232C	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	1288					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						CTTTGTTCATGGCCAAGGCTG	0.438			NA											28	156					3.65163e-15	6.36694e-15	0.00632	1	0
PTH2R	5746	broad.mit.edu	37	2	209302551	209302551	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:209302551G>A	uc002vdb.2	+	4	569	c.356G>A	c.(355-357)TGG>TAG	p.W119*	PTH2R_uc010zjb.1_Nonsense_Mutation_p.W130*	NM_005048	NP_005039	P49190	PTH2R_HUMAN	parathyroid hormone 2 receptor precursor	119	Extracellular (Potential).					integral to plasma membrane	parathyroid hormone receptor activity			ovary(1)|breast(1)|skin(1)	3				Epithelial(149;0.0684)|Lung(261;0.0785)|LUSC - Lung squamous cell carcinoma(261;0.0836)		AATAAAACATGGGCCAATTAT	0.413			NA											12	31					0	0	0.010729	0	0
ABCA12	26154	broad.mit.edu	37	2	215838689	215838689	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:215838689C>T	uc002vew.2	-	36	5766	c.5546G>A	c.(5545-5547)TGC>TAC	p.C1849Y	ABCA12_uc002vev.2_Missense_Mutation_p.C1531Y|ABCA12_uc010zjn.1_Missense_Mutation_p.C776Y	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1849					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		ATTTTCTGAGCAGGAGCAAAC	0.378	Ovarian(66;664 1488 5121 34295)		NA											15	29					0	0	0.003163	0	0
AAMP	14	broad.mit.edu	37	2	219130619	219130619	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:219130619C>T	uc002vhk.2	-	7	898	c.814G>A	c.(814-816)GGC>AGC	p.G272S	AAMP_uc002vhj.2_Missense_Mutation_p.G253S|AAMP_uc010fvo.2_Missense_Mutation_p.G272S|AAMP_uc002vhl.2_Missense_Mutation_p.G273S	NM_001087	NP_001078	Q13685	AAMP_HUMAN	angio-associated, migratory cell protein	272	WD 5.				angiogenesis|cell differentiation|positive regulation of endothelial cell migration|smooth muscle cell migration	cell surface|cytoplasm|plasma membrane	heparin binding			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;7.19e-07)|all cancers(144;0.000131)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ATCAAGCTGCCATCCTGGTTG	0.637			NA											4	17					0	0	0.009096	0	0
IHH	3549	broad.mit.edu	37	2	219920022	219920022	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:219920022C>A	uc002vjo.1	-	3	1143	c.1143G>T	c.(1141-1143)GTG>GTT	p.V381V		NM_002181	NP_002172	Q14623	IHH_HUMAN	Indian hedgehog homolog precursor	381					cell-cell signaling|intein-mediated protein splicing|proteolysis	extracellular space|plasma membrane	cholesterol binding|patched binding|peptidase activity			breast(1)	1		Renal(207;0.0915)		Epithelial(149;1.13e-06)|all cancers(144;0.000188)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GGTACCAATGCACACCCTCCC	0.652			NA											8	11					1.12685e-05	1.40753e-05	0.004482	1	0
SPEG	10290	broad.mit.edu	37	2	220353835	220353835	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:220353835C>A	uc010fwg.2	+	35	8209	c.8209C>A	c.(8209-8211)CAC>AAC	p.H2737N		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2737	Fibronectin type-III 2.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CAACGTGACCCACCTGCCAGT	0.607			NA											22	83					2.70639e-06	3.50676e-06	0.002299	1	0
ACCN4	55515	broad.mit.edu	37	2	220399896	220399896	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:220399896C>G	uc002vma.2	+	5	1417	c.1403C>G	c.(1402-1404)TCC>TGC	p.S468C	ACCN4_uc002vlz.2_Missense_Mutation_p.S487C|ACCN4_uc002vmb.2_Missense_Mutation_p.S141C	NM_182847	NP_878267	Q96FT7	ACCN4_HUMAN	amiloride-sensitive cation channel 4 isoform 2	468	Extracellular (Potential).					integral to plasma membrane	sodium channel activity|sodium ion transmembrane transporter activity			ovary(2)	2		Renal(207;0.0183)		Epithelial(149;5.47e-10)|all cancers(144;9e-08)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.0086)|READ - Rectum adenocarcinoma(5;0.156)		GTTGCAGACTCCCTGGGTGGG	0.647			NA											16	44					0	0	0.007413	0	0
INHA	3623	broad.mit.edu	37	2	220439701	220439701	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:220439701C>G	uc002vmk.1	+	2	698	c.554C>G	c.(553-555)GCT>GGT	p.A185G		NM_002191	NP_002182	P05111	INHA_HUMAN	inhibin alpha subunit precursor	185					cell cycle arrest|cell surface receptor linked signaling pathway|cell-cell signaling|erythrocyte differentiation|hemoglobin biosynthetic process|induction of apoptosis|negative regulation of B cell differentiation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|regulation of cell proliferation|response to external stimulus|skeletal system development	inhibin A complex|inhibin-betaglycan-ActRII complex	cytokine activity|growth factor activity|hormone activity|signal transducer activity			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;4.58e-07)|all cancers(144;4.31e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		GCCACCTCTGCTCTCTCTCTG	0.687			NA											16	49					0	0	0.006122	0	0
EPHA4	2043	broad.mit.edu	37	2	222301814	222301814	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:222301814G>T	uc002vmq.2	-	12	2145	c.2103C>A	c.(2101-2103)TAC>TAA	p.Y701*	EPHA4_uc002vmr.2_Nonsense_Mutation_p.Y701*|EPHA4_uc010zlm.1_Nonsense_Mutation_p.Y642*|EPHA4_uc010zln.1_Nonsense_Mutation_p.Y701*	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	701	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CATTCTCCATGTACTCTGTTA	0.388			NA											10	42					1.58986e-06	2.08065e-06	0.008291	1	0
EPHA4	2043	broad.mit.edu	37	2	222429103	222429103	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:222429103C>A	uc002vmq.2	-	3	213	c.171G>T	c.(169-171)GTG>GTT	p.V57V	EPHA4_uc002vmr.2_Silent_p.V57V|EPHA4_uc010zlm.1_5'UTR|EPHA4_uc010zln.1_Silent_p.V57V	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	57	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CCATGATACTCACTTCCTCCC	0.418			NA											4	72					1.23904e-05	1.53974e-05	0.000602	1	0
COL4A4	1286	broad.mit.edu	37	2	227886798	227886798	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:227886798C>T	uc010zlt.1	-	43	4836	c.4182G>A	c.(4180-4182)ATG>ATA	p.M1394I		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	1394	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CAGGGAGCCCCATGGCTCCTT	0.527			NA											44	158					0	0	0.010771	0	0
SPHKAP	80309	broad.mit.edu	37	2	228881338	228881338	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:228881338G>C	uc002vpq.2	-	7	4279	c.4232C>G	c.(4231-4233)CCT>CGT	p.P1411R	SPHKAP_uc002vpp.2_Missense_Mutation_p.P1411R|SPHKAP_uc010zlx.1_Missense_Mutation_p.P1411R	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1411						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TATTGGTACAGGGTCCTGGCA	0.453			NA											13	69					0	0	0.001368	0	0
TRPM8	79054	broad.mit.edu	37	2	234879034	234879034	+	Silent	SNP	G	G	T	rs139854519		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:234879034G>T	uc002vvh.2	+	17	2359	c.2319G>T	c.(2317-2319)TCG>TCT	p.S773S	TRPM8_uc010fyj.2_Intron	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	773	Helical; Name=3; (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TCCTGTACTCGCTGGTCTTTG	0.562			NA											24	133					3.6726e-16	6.46317e-16	0.003954	1	0
CXCR7	57007	broad.mit.edu	37	2	237489920	237489920	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:237489920C>T	uc010fyq.2	+	3	1042	c.812C>T	c.(811-813)GCG>GTG	p.A271V	CXCR7_uc002vwd.2_Missense_Mutation_p.A271V	NM_020311	NP_064707	P25106	CXCR7_HUMAN	chemokine orphan receptor 1	271	Helical; Name=6; (Potential).				interspecies interaction between organisms	integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			large_intestine(1)|central_nervous_system(1)|skin(1)	3		Breast(86;0.000182)|Renal(207;0.00339)|all_hematologic(139;0.0048)|Acute lymphoblastic leukemia(138;0.0775)|Ovarian(221;0.089)|all_lung(227;0.147)|all_neural(83;0.223)		Epithelial(121;8.35e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.09e-11)|Kidney(56;1.11e-07)|KIRC - Kidney renal clear cell carcinoma(57;3.03e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000176)|Lung(119;0.00468)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.118)		TACCACGTGGCGGTGCTGCTG	0.607			NA											16	77					0	0	0.003163	0	0
COL6A3	1293	broad.mit.edu	37	2	238277749	238277749	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:238277749C>A	uc002vwl.2	-	10	4642	c.4357G>T	c.(4357-4359)GCA>TCA	p.A1453S	COL6A3_uc002vwo.2_Missense_Mutation_p.A1247S|COL6A3_uc010znj.1_Missense_Mutation_p.A846S	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1453	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CGAATATGTGCAAAGCCATCT	0.468			NA											12	11					1.5842e-08	2.2862e-08	0.001855	1	0
PER2	8864	broad.mit.edu	37	2	239161571	239161571	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:239161571C>T	uc002vyc.2	-	19	3330	c.3093G>A	c.(3091-3093)CAG>CAA	p.Q1031Q	PER2_uc010znv.1_Silent_p.Q1031Q	NM_022817	NP_073728	O15055	PER2_HUMAN	period 2	1031					circadian rhythm|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|signal transducer activity			upper_aerodigestive_tract(1)|breast(1)	2		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0423)|all_lung(227;0.114)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Lung NSC(271;0.223)|Hepatocellular(293;0.244)		Epithelial(121;6.84e-24)|OV - Ovarian serous cystadenocarcinoma(60;9.73e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.5e-08)|BRCA - Breast invasive adenocarcinoma(100;6.77e-05)|Lung(119;0.00941)|LUSC - Lung squamous cell carcinoma(224;0.0161)		GCGCCTTCGGCTGCTGGTCCC	0.617			NA											8	83					0	0	0.00308	0	0
PDYN	5173	broad.mit.edu	37	20	1961312	1961312	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:1961312G>T	uc010gaj.2	-	3	664	c.422C>A	c.(421-423)GCA>GAA	p.A141E	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.A141E|PDYN_uc010zpt.1_Intron	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	141					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						CTCAGACTCTGCTCCCTCCCT	0.547			NA											14	41					3.27435e-08	4.64253e-08	0.00245	1	0
STK35	140901	broad.mit.edu	37	20	2083825	2083825	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:2083825G>A	uc010gak.2	+	2	706	c.706G>A	c.(706-708)GAC>AAC	p.D236N	STK35_uc010zpu.1_Missense_Mutation_p.D103N|STK35_uc002wfw.3_Missense_Mutation_p.D103N	NM_080836	NP_543026	Q8TDR2	STK35_HUMAN	serine/threonine kinase 35	236	Protein kinase.					cytoplasm|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GATCCGCTGCGACGCCCCCGA	0.682			NA											5	8					0	0	0.000602	0	0
VPS16	64601	broad.mit.edu	37	20	2846072	2846072	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:2846072G>T	uc002whe.2	+	22	2250	c.2202G>T	c.(2200-2202)CTG>CTT	p.L734L	VPS16_uc002whh.2_Intron|PTPRA_uc002whj.2_Intron|VPS16_uc002whf.2_Silent_p.L590L|VPS16_uc002whd.2_RNA|VPS16_uc002whg.2_Silent_p.L420L|VPS16_uc002whi.2_Silent_p.L218L	NM_022575	NP_072097	Q9H269	VPS16_HUMAN	vacuolar protein sorting 16 isoform 1	734					intracellular protein transport	early endosome|HOPS complex|late endosome membrane|lysosomal membrane|recycling endosome				ovary(2)|pancreas(1)|skin(1)	4						TGACTGCCCTGGCAGATTTGG	0.587			NA											4	19					0.000602214	0.000676645	0.000602	1	0
C20orf194	25943	broad.mit.edu	37	20	3299041	3299041	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:3299041T>A	uc002wii.2	-	17	1414	c.1363A>T	c.(1363-1365)ATG>TTG	p.M455L	C20orf194_uc002wij.3_Missense_Mutation_p.M194L|C20orf194_uc002wik.2_Missense_Mutation_p.M129L	NM_001009984	NP_001009984	Q5TEA3	CT194_HUMAN	hypothetical protein LOC25943	455											0						TAGACGGCCATACAAGCCTGC	0.403			NA											12	23					0	0	0.001368	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3687105	3687105	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:3687105G>T	uc002wja.2	-	2	298	c.298C>A	c.(298-300)CTG>ATG	p.L100M	SIGLEC1_uc002wiz.3_Missense_Mutation_p.L100M|SIGLEC1_uc002wjc.2_Missense_Mutation_p.L11M	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	100	Ig-like V-type.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						TTCAGCAGCAGGTTGCACACC	0.637			NA											12	44					5.50884e-06	6.94735e-06	0.001368	1	0
C20orf103	24141	broad.mit.edu	37	20	9498814	9498814	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:9498814G>A	uc002wni.1	+	5	832	c.603G>A	c.(601-603)ATG>ATA	p.M201I	C20orf103_uc010zrc.1_Missense_Mutation_p.M157I	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	201	Extracellular (Potential).					integral to membrane		p.M201fs*33(1)		upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			CGGTCACCATGATCCTGTCTG	0.498			NA											8	32					0	0	0.00308	0	0
PAK7	57144	broad.mit.edu	37	20	9546846	9546846	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:9546846C>A	uc002wnl.2	-	6	1721	c.1176G>T	c.(1174-1176)TCG>TCT	p.S392S	PAK7_uc002wnk.2_Silent_p.S392S|PAK7_uc002wnj.2_Silent_p.S392S|PAK7_uc010gby.1_Silent_p.S392S	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	392	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity	p.S392S(1)		lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			AGATGTACTGCGAACTGCTCT	0.597			NA											17	51					2.23348e-06	2.90285e-06	0.004007	1	0
SSTR4	6754	broad.mit.edu	37	20	23016573	23016573	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:23016573T>A	uc002wsr.2	+	1	517	c.453T>A	c.(451-453)CCT>CCA	p.P151P		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	151	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TGGTGCACCCTCTGCGCGCGG	0.667	Esophageal Squamous(15;850 1104 16640)		NA											14	49					0	0	0.004007	0	0
CST11	140880	broad.mit.edu	37	20	23433353	23433353	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:23433353T>A	uc002wtf.1	-	1	130	c.96A>T	c.(94-96)CTA>CTT	p.L32L	CST11_uc002wtg.1_Silent_p.L32L	NM_130794	NP_570612	Q9H112	CST11_HUMAN	cystatin 11 isoform 1 precursor	32					defense response to bacterium	cytoplasm|nucleus	cysteine-type endopeptidase inhibitor activity				0	Colorectal(13;0.0431)|Lung NSC(19;0.235)					CATGGACGCTTAGAAAGGTTT	0.498			NA											23	74					0	0	0.00333	0	0
TMEM90B	79953	broad.mit.edu	37	20	24524197	24524197	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:24524197A>G	uc002wtw.1	+	2	1097	c.464A>G	c.(463-465)GAG>GGG	p.E155G		NM_024893	NP_079169	Q9H7V2	SYNG1_HUMAN	transmembrane protein 90B	155	Poly-Glu.|Cytoplasmic (Potential).				response to biotic stimulus	early endosome membrane|integral to membrane|plasma membrane					0						GAGGAGGAGGAGTTCCAGGAG	0.527			NA											10	115					0	0	0.007413	0	0
NANP	140838	broad.mit.edu	37	20	25596977	25596977	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:25596977C>A	uc002wuy.2	-	2	395	c.331G>T	c.(331-333)GCA>TCA	p.A111S		NM_152667	NP_689880	Q8TBE9	NANP_HUMAN	N-acetylneuraminic acid phosphatase	111					N-acetylneuraminate biosynthetic process		N-acylneuraminate-9-phosphatase activity|phosphoglycolate phosphatase activity				0						ACGTCTTCTGCTAGTGTCATA	0.443			NA											9	57					7.48243e-07	9.9376e-07	0.006214	1	0
REM1	28954	broad.mit.edu	37	20	30064471	30064472	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:30064471_30064472GG>TT	uc002wwa.2	+	2	507_508	c.223_224GG>TT	c.(223-225)GGC>TTC	p.G75F		NM_014012	NP_054731	O75628	REM1_HUMAN	RAS-like GTP-binding protein REM	75					small GTPase mediated signal transduction	membrane	calmodulin binding|GTP binding|GTPase activity			lung(2)|pancreas(2)	4	all_cancers(5;0.000119)|Lung NSC(7;1.32e-05)|all_lung(7;2.14e-05)|all_hematologic(12;0.158)|Ovarian(7;0.198)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			CGACTCTGAAGGCTCCTGGGAG	0.599			NA											22	38					0	0	0.004672	0	0
MYLK2	85366	broad.mit.edu	37	20	30409403	30409403	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:30409403C>A	uc002wwq.2	+	4	737	c.635C>A	c.(634-636)CCA>CAA	p.P212Q		NM_033118	NP_149109	Q9H1R3	MYLK2_HUMAN	skeletal myosin light chain kinase	212					cardiac muscle tissue morphogenesis|regulation of muscle filament sliding		ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			lung(2)|skin(2)|ovary(1)|central_nervous_system(1)	6			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			GAGAAAACCCCAGGCCAGGCT	0.607			NA											23	86					2.70639e-06	3.50676e-06	0.002299	1	0
HCK	3055	broad.mit.edu	37	20	30689292	30689292	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:30689292C>A	uc002wxh.2	+	13	1722	c.1551C>A	c.(1549-1551)GCC>GCA	p.A517A	HCK_uc010gdy.2_Silent_p.A496A|HCK_uc002wxi.2_Silent_p.A495A	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	517					interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			TCTACACGGCCACAGAGAGCC	0.607			NA											4	18					0.00909568	0.00964006	0.009096	1	0
PLAGL2	5326	broad.mit.edu	37	20	30785203	30785203	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:30785203C>T	uc002wxn.2	-	3	760	c.543G>A	c.(541-543)CGG>CGA	p.R181R		NM_002657	NP_002648	Q9UPG8	PLAL2_HUMAN	pleiomorphic adenoma gene-like 2	181						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CGCCTGCTACCCGGCGTGAGT	0.617	Colon(163;15 1893 11280 16306 47518)		NA											5	12					0	0	0.001168	0	0
SUN5	140732	broad.mit.edu	37	20	31583529	31583529	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:31583529A>T	uc002wyi.2	-	8	523	c.430T>A	c.(430-432)TAC>AAC	p.Y144N		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	144	Potential.				spermatogenesis					skin(1)	1						TTCTCCTGGTACAACCTTATC	0.483			NA											64	116					0	0	0.00361	0	0
PXMP4	11264	broad.mit.edu	37	20	32302524	32302524	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:32302524C>A	uc002wzv.2	-	2	255	c.132G>T	c.(130-132)CGG>CGT	p.R44R	PXMP4_uc002wzw.2_Silent_p.R44R|PXMP4_uc010zuh.1_Silent_p.R44R	NM_007238	NP_009169	Q9Y6I8	PXMP4_HUMAN	peroxisomal membrane protein 4 isoform a	44						integral to membrane|membrane fraction|mitochondrial inner membrane|peroxisomal membrane	protein transporter activity				0						CGTGAGGGGCCCGGATTTTGG	0.502			NA											19	115					1.10513e-12	1.81519e-12	0.002299	1	0
ACSS2	55902	broad.mit.edu	37	20	33509666	33509666	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:33509666T>C	uc002xbd.2	+	13	1666	c.1545T>C	c.(1543-1545)TAT>TAC	p.Y515Y	ACSS2_uc002xbc.2_Silent_p.Y420Y|ACSS2_uc010zum.1_Intron|ACSS2_uc010gey.2_Silent_p.Y528Y|ACSS2_uc002xbe.2_Silent_p.Y223Y|ACSS2_uc002xbf.2_Intron	NM_018677	NP_061147	Q9NR19	ACSA_HUMAN	acyl-CoA synthetase short-chain family member 2	515					ethanol oxidation|lipid biosynthetic process|xenobiotic metabolic process	cytosol|nucleus	acetate-CoA ligase activity|ATP binding|protein binding				0					Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CTGAAGGTTATCTGGTGAGGC	0.493			NA											35	194					0	0	0.003271	0	0
RPN2	6185	broad.mit.edu	37	20	35812692	35812692	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:35812692G>T	uc002xgp.2	+	2	427	c.123G>T	c.(121-123)CTG>CTT	p.L41L	RPN2_uc002xgo.3_Silent_p.L41L|RPN2_uc010gfw.2_5'UTR|RPN2_uc002xgq.2_Silent_p.L41L	NM_002951	NP_002942	P04844	RPN2_HUMAN	ribophorin II isoform 1 precursor	41	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|nucleus|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				AAGCCTCGCTGGATCGCCCTT	0.537			NA											21	49					1.55795e-14	2.67526e-14	0.012319	1	0
SRC	6714	broad.mit.edu	37	20	36026134	36026134	+	Missense_Mutation	SNP	A	A	T	rs138818786		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:36026134A>T	uc002xgx.2	+	9	1185	c.736A>T	c.(736-738)ACC>TCC	p.T246S	SRC_uc002xgy.2_Missense_Mutation_p.T246S	NM_005417	NP_005408	P12931	SRC_HUMAN	proto-oncogene tyrosine-protein kinase SRC	246	SH2.				axon guidance|bone resorption|cell junction assembly|cellular membrane organization|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular protein kinase cascade|leukocyte migration|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of integrin activation|Ras protein signal transduction|regulation of bone resorption|regulation of vascular permeability|response to interleukin-1|signal complex assembly|T cell costimulation	caveola|cytosol|mitochondrial inner membrane	ATP binding|heme binding|integrin binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|SH2 domain binding|SH3/SH2 adaptor activity			large_intestine(10)|lung(1)|central_nervous_system(1)|endometrium(1)	13		Myeloproliferative disorder(115;0.00878)			Dasatinib(DB01254)	CCGCCTCACCACCGTGTGCCC	0.687			NA											9	17					0	0	0.008291	0	0
LBP	3929	broad.mit.edu	37	20	36974972	36974972	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:36974972C>A	uc002xic.1	+	1	88	c.53C>A	c.(52-54)ACG>AAG	p.T18K		NM_004139	NP_004130	P18428	LBP_HUMAN	lipopolysaccharide-binding protein precursor	18					acute-phase response|cellular defense response|cellular response to lipoteichoic acid|defense response to Gram-negative bacterium|defense response to Gram-positive bacterium|detection of molecule of bacterial origin|innate immune response|lipid transport|lipopolysaccharide transport|lipopolysaccharide-mediated signaling pathway|macrophage activation involved in immune response|negative regulation of tumor necrosis factor production|opsonization|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of macrophage activation|positive regulation of respiratory burst involved in inflammatory response|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of tumor necrosis factor production|Toll signaling pathway	extracellular space	Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|lipid binding|lipopolysaccharide binding|lipoteichoic acid binding|receptor binding			ovary(1)|central_nervous_system(1)	2		Myeloproliferative disorder(115;0.00878)				TTGCTGCTTACGTCCACCCCA	0.612			NA											12	44					4.36969e-10	6.60896e-10	0.001855	1	0
TOP1	7150	broad.mit.edu	37	20	39728849	39728849	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:39728849A>G	uc002xjl.2	+	12	1375	c.1129A>G	c.(1129-1131)ATC>GTC	p.I377V	uc002xjn.1_Intron	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	377					DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	GAAGAGACGAATCATGCCCGA	0.507			NA	T	NUP98	AML*								10	34					0	0	0.010729	0	0
PTPRT	11122	broad.mit.edu	37	20	40979359	40979359	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:40979359G>T	uc002xkg.2	-	11	1958	c.1774C>A	c.(1774-1776)CCT>ACT	p.P592T	PTPRT_uc010ggj.2_Missense_Mutation_p.P592T	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	592	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TCGTACTCAGGCATGGATGGA	0.562			NA											27	50					7.26314e-15	1.26251e-14	0.007291	1	0
JPH2	57158	broad.mit.edu	37	20	42788499	42788499	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:42788499T>C	uc002xli.1	-	2	1801	c.928A>G	c.(928-930)AGT>GGT	p.S310G		NM_020433	NP_065166	Q9BR39	JPH2_HUMAN	junctophilin 2 isoform 1	310	MORN 7.|Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane					0		Myeloproliferative disorder(115;0.0122)	COAD - Colon adenocarcinoma(18;0.00189)			CGGAGGCCACTGGAGCGTTCG	0.672			NA											3	17					0	0	0.004672	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47585760	47585760	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:47585760G>A	uc002xtx.3	+	9	1288	c.1136G>A	c.(1135-1137)CGC>CAC	p.R379H		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	379					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CTTGTGTTCCGCTCCCTGTGC	0.507	Esophageal Squamous(176;1738 1974 26285 33069 35354)		NA											14	51					0	0	0.004007	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871691	51871691	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:51871691T>C	uc002xwo.2	+	2	2650	c.1694T>C	c.(1693-1695)CTG>CCG	p.L565P		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	565					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			TCCCAGGTACTGCAGATCCGG	0.587			NA											14	73					0	0	0.004007	0	0
BCAS1	8537	broad.mit.edu	37	20	52645453	52645453	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:52645453C>A	uc002xws.2	-	4	539	c.201G>T	c.(199-201)ACG>ACT	p.T67T	BCAS1_uc010zzb.1_5'UTR|BCAS1_uc010gim.2_5'UTR|BCAS1_uc002xwt.2_Silent_p.T67T|BCAS1_uc010gil.1_Silent_p.T67T|BCAS1_uc010zzc.1_5'UTR	NM_003657	NP_003648	O75363	BCAS1_HUMAN	breast carcinoma amplified sequence 1	67						cytoplasm	protein binding			ovary(2)|central_nervous_system(1)	3	Breast(2;9.53e-15)|Lung NSC(4;5.57e-06)|all_lung(4;1.44e-05)		STAD - Stomach adenocarcinoma(23;0.116)|Colorectal(105;0.198)			CACTTATCTCCGTTGTCTCGG	0.483			NA											8	31					0.000157383	0.000182879	0.00308	1	0
ZNF831	128611	broad.mit.edu	37	20	57769446	57769446	+	Silent	SNP	G	G	A	rs150212573	by1000genomes	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:57769446G>A	uc002yan.2	+	1	3372	c.3372G>A	c.(3370-3372)CCG>CCA	p.P1124P		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1124						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCCCCGACCCGTGTTCCCCCC	0.667			NA											6	39					0	0	0.001984	0	0
ZNF831	128611	broad.mit.edu	37	20	57769659	57769659	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:57769659C>A	uc002yan.2	+	1	3585	c.3585C>A	c.(3583-3585)CCC>CCA	p.P1195P		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1195						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TCCCTCTGCCCGCGGAGCAGA	0.632			NA											11	25					0.00829132	0.00888729	0.008291	1	0
CHRNA4	1137	broad.mit.edu	37	20	61991028	61991028	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:61991028C>A	uc002yes.2	-	2	278	c.100G>T	c.(100-102)GCC>TCC	p.A34S	CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_5'UTR|CHRNA4_uc002yev.1_5'UTR|CHRNA4_uc010gkf.1_5'UTR	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	34	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	TCGGCGTGGGCCCGGGTCTCC	0.672			NA											4	39					0.000602214	0.000676645	0.000602	1	0
UCKL1	54963	broad.mit.edu	37	20	62571609	62571609	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:62571609T>A	uc010gkn.2	-	14	1504	c.1461A>T	c.(1459-1461)GCA>GCT	p.A487A	UCKL1_uc002yhj.2_Silent_p.A130A|UCKL1_uc011abm.1_Silent_p.A472A|UCKL1_uc011abn.1_RNA	NM_017859	NP_060329	Q9NWZ5	UCKL1_HUMAN	uridine-cytidine kinase 1-like 1	487					interspecies interaction between organisms	endoplasmic reticulum|nucleus	ATP binding|phosphotransferase activity, alcohol group as acceptor|protein binding|uridine kinase activity				0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CGCCCATCTCTGCCATGAGCA	0.567			NA											13	40					0	0	0.00245	0	0
TPTE	7179	broad.mit.edu	37	21	10910354	10910354	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:10910354C>A	uc002yip.1	-	22	1770	c.1402G>T	c.(1402-1404)GAC>TAC	p.D468Y	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.D450Y|TPTE_uc002yir.1_Missense_Mutation_p.D430Y|TPTE_uc010gkv.1_Missense_Mutation_p.D330Y	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	468	C2 tensin-type.				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GGTAGACCGTCGAATACATCA	0.338			NA											21	92					1.22574e-08	1.77341e-08	0.002299	1	0
TMPRSS15	5651	broad.mit.edu	37	21	19687566	19687566	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:19687566G>A	uc002ykw.2	-	17	1960	c.1929C>T	c.(1927-1929)TGC>TGT	p.C643C		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	643	Extracellular (Potential).|LDL-receptor class A 2.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						GGTCTGCCTTGCATGGCTCTA	0.413			NA											6	27					0	0	0.001168	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28338566	28338566	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:28338566C>T	uc002ymg.2	-	1	874	c.145G>A	c.(145-147)GAG>AAG	p.E49K		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	49					proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						TGCACCTCCTCCCCCTGCCGC	0.751	Esophageal Squamous(53;683 1080 10100 14424 45938)		NA											3	13					0	0	0.004672	0	0
GRIK1	2897	broad.mit.edu	37	21	30953808	30953808	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:30953808C>T	uc002yno.1	-	13	2313	c.1849G>A	c.(1849-1851)GTG>ATG	p.V617M	GRIK1_uc002ynn.2_Missense_Mutation_p.V602M|GRIK1_uc011acs.1_Missense_Mutation_p.V617M|GRIK1_uc011act.1_Missense_Mutation_p.V478M|GRIK1_uc010glq.1_Missense_Mutation_p.V460M	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	617	Cytoplasmic (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	TTGTTTTCCACCACGTCTGAG	0.448			NA											13	34					0	0	0.001855	0	0
GRIK1	2897	broad.mit.edu	37	21	31045395	31045395	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:31045395C>A	uc002yno.1	-	4	1098	c.634G>T	c.(634-636)GCC>TCC	p.A212S	GRIK1_uc002ynn.2_Missense_Mutation_p.A212S|GRIK1_uc011acs.1_Missense_Mutation_p.A212S|GRIK1_uc011act.1_Missense_Mutation_p.A156S|GRIK1_uc010glq.1_Missense_Mutation_p.A70S|GRIK1_uc002ynr.2_Missense_Mutation_p.A212S	NM_000830	NP_000821	P39086	GRIK1_HUMAN	glutamate receptor, ionotropic, kainate 1	212	Extracellular (Potential).				central nervous system development|synaptic transmission	cell junction|postsynaptic membrane	kainate selective glutamate receptor activity			large_intestine(1)|ovary(1)|skin(1)	3					L-Glutamic Acid(DB00142)|Topiramate(DB00273)	AAAGGCTTGGCATCTTTATTC	0.408			NA											58	77					1.4709e-25	2.80328e-25	0.00361	1	0
KRTAP23-1	337963	broad.mit.edu	37	21	31720917	31720917	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:31720917T>C	uc002yny.1	-	1	8	c.8A>G	c.(7-9)TAC>TGC	p.Y3C		NM_181624	NP_853655	A1A580	KR231_HUMAN	keratin associated protein 23-1	3						intermediate filament					0						GCAGCAGTTGTAGGACATGTT	0.547			NA											14	61					0	0	0.00245	0	0
KRTAP19-1	337882	broad.mit.edu	37	21	31852438	31852438	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:31852438C>A	uc011acx.1	-	1	199	c.199G>T	c.(199-201)GGC>TGC	p.G67C		NM_181607	NP_853638	Q8IUB9	KR191_HUMAN	keratin associated protein 19-1	67	26 X 2 AA repeats of G-[YCGS].					intermediate filament					0						CCTCCAAAGCCAGAGCCATAT	0.512			NA											59	174					2.69953e-25	5.13909e-25	0.00361	1	0
ITSN1	6453	broad.mit.edu	37	21	35166694	35166694	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:35166694T>C	uc002yta.1	+	17	2142	c.1874T>C	c.(1873-1875)ATG>ACG	p.M625T	DONSON_uc002ysn.1_Intron|ITSN1_uc002yth.3_RNA|ITSN1_uc002ysz.2_Missense_Mutation_p.M625T|ITSN1_uc010gmg.2_Missense_Mutation_p.M588T|ITSN1_uc010gmh.2_RNA|ITSN1_uc002ysw.2_Missense_Mutation_p.M625T|ITSN1_uc010gmi.2_Missense_Mutation_p.M588T|ITSN1_uc010gmj.2_Missense_Mutation_p.M509T|ITSN1_uc002ysy.2_Missense_Mutation_p.M625T|ITSN1_uc002ysx.2_Missense_Mutation_p.M588T|ITSN1_uc002ytb.1_Missense_Mutation_p.M625T|ITSN1_uc002ytc.1_Missense_Mutation_p.M625T|ITSN1_uc002ytd.2_RNA|ITSN1_uc010gmk.2_Missense_Mutation_p.M588T|ITSN1_uc010gml.2_RNA|ITSN1_uc002ytj.2_Missense_Mutation_p.M625T|ITSN1_uc010gmm.1_RNA|ITSN1_uc002yte.2_Missense_Mutation_p.M559T	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	625	Potential.|KLERQ.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						CAAAAGTCCATGGAGGCTGAA	0.383			NA											9	27					0	0	0.004482	0	0
ITSN1	6453	broad.mit.edu	37	21	35254742	35254742	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:35254742T>A	uc002yta.1	+	35	4805	c.4537T>A	c.(4537-4539)TAT>AAT	p.Y1513N	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.Y1508N|ITSN1_uc002ytj.2_Missense_Mutation_p.Y1452N|ITSN1_uc010gmm.1_RNA|ITSN1_uc010gmn.1_Intron|ITSN1_uc002ytk.1_Intron	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1513	PH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						AAACCTGCAGTATAAAATGTA	0.433			NA											5	23					0	0	0.001168	0	0
KCNE1	3753	broad.mit.edu	37	21	35821760	35821760	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:35821760G>A	uc010gmp.2	-	2	603	c.173C>T	c.(172-174)ACC>ATC	p.T58I	KCNE1_uc002ytz.2_Missense_Mutation_p.T58I|KCNE1_uc010gmq.2_Missense_Mutation_p.T58I|KCNE1_uc010gmr.2_Missense_Mutation_p.T58I|KCNE1_uc010gms.2_Missense_Mutation_p.T58I|KCNE1_uc002yua.2_RNA	NM_001127670	NP_001121142	P15382	KCNE1_HUMAN	potassium voltage-gated channel, Isk-related	58	Helical; (Potential).		TL -> PP (in JLNS2).		blood circulation|membrane depolarization|muscle contraction|sensory perception of sound	lysosome	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(2)	2					Indapamide(DB00808)	GATGCCCAGGGTGAAGAAGCC	0.602			NA											13	35					0	0	0.001368	0	0
RCAN1	1827	broad.mit.edu	37	21	35890403	35890403	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:35890403G>A	uc002yue.2	-	4	810	c.738C>T	c.(736-738)TAC>TAT	p.Y246Y	RCAN1_uc002yuc.2_Silent_p.Y165Y|RCAN1_uc002yud.2_Silent_p.Y111Y|RCAN1_uc002yub.2_Silent_p.Y191Y	NM_004414	NP_004405	P53805	RCAN1_HUMAN	calcipressin 1 isoform a	246					blood circulation|calcium-mediated signaling|central nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0						GGATCGGCGTGTACTCCGGCC	0.502			NA											27	95					0	0	0.008361	0	0
MORC3	23515	broad.mit.edu	37	21	37741461	37741461	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:37741461G>T	uc002yvi.2	+	15	1871	c.1795G>T	c.(1795-1797)GAA>TAA	p.E599*		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	599					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						CATGAAATCAGAACAGAGTCA	0.433			NA											24	40					2.21704e-12	3.61011e-12	0.00278	1	0
ETS2	2114	broad.mit.edu	37	21	40194635	40194635	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:40194635A>C	uc002yxg.2	+	10	1428	c.1232A>C	c.(1231-1233)AAG>ACG	p.K411T	ETS2_uc002yxf.2_Missense_Mutation_p.K551T	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	411	ETS.				positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				AATAAGCCCAAGATGAACTAC	0.483			NA											10	45					0	0	0.010729	0	0
PCP4	5121	broad.mit.edu	37	21	41300977	41300977	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:41300977G>A	uc002yyp.2	+	3	211	c.130G>A	c.(130-132)GTG>ATG	p.V44M		NM_006198	NP_006189	P48539	PCP4_HUMAN	Purkinje cell protein 4	44	IQ.				central nervous system development	cytosol|nucleus				large_intestine(1)	1		Prostate(19;2.65e-06)|all_epithelial(19;0.138)				ACGTGCAGCGGTGGCCATTCA	0.463			NA											5	47					0	0	0.000602	0	0
MX2	4600	broad.mit.edu	37	21	42748938	42748938	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:42748938A>G	uc002yzf.1	+	2	209	c.105A>G	c.(103-105)CCA>CCG	p.P35P	MX2_uc011aer.1_RNA	NM_002463	NP_002454	P20592	MX2_HUMAN	myxovirus resistance protein 2	35					response to virus|type I interferon-mediated signaling pathway	cytoplasm|nucleus	GTP binding|GTPase activity			ovary(2)	2		Prostate(19;1.57e-07)|all_epithelial(19;0.0222)				AGCCACCGCCATTCGGCACAG	0.498			NA											15	70					0	0	0.004007	0	0
PRDM15	63977	broad.mit.edu	37	21	43236155	43236155	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:43236155C>A	uc002yzq.1	-	26	3507	c.3396G>T	c.(3394-3396)AAG>AAT	p.K1132N	PRDM15_uc002yzo.2_Missense_Mutation_p.K803N|PRDM15_uc002yzp.2_Missense_Mutation_p.K823N|PRDM15_uc002yzr.1_Missense_Mutation_p.K823N	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	1132	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTTGTGCAGCTTCATGTGGT	0.627			NA											13	44					2.27111e-07	3.08624e-07	0.001368	1	0
ZNF295	49854	broad.mit.edu	37	21	43412040	43412040	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:43412040T>C	uc002zab.3	-	3	2379	c.2165A>G	c.(2164-2166)TAC>TGC	p.Y722C	ZNF295_uc002yzz.3_Intron|ZNF295_uc002yzy.3_Missense_Mutation_p.Y722C|ZNF295_uc002zaa.3_Missense_Mutation_p.Y722C	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	722					negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCGGCACTGGTAAACCTCCTT	0.502			NA											58	202					0	0	0.00361	0	0
AIRE	326	broad.mit.edu	37	21	45709916	45709916	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:45709916C>A	uc002zei.2	+	7	971	c.844C>A	c.(844-846)CCT>ACT	p.P282T	AIRE_uc010gpq.2_5'Flank|AIRE_uc002zej.2_5'Flank|AIRE_uc010gpr.2_5'Flank	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	282					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CGTTCCCGCCCCTCTGGCCCT	0.687			NA							Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				9	11					0.000673444	0.00075369	0.008291	1	0
KRTAP10-7	386675	broad.mit.edu	37	21	46021053	46021053	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr21:46021053T>A	uc002zfn.3	+	2	542	c.517T>A	c.(517-519)TGC>AGC	p.C173S	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198689	NP_941962	P60409	KR107_HUMAN	keratin associated protein 10-7	178	13.|30 X 5 AA repeats of C-C-X(3).					keratin filament					0						CTCTTCGTGCTGCCAGCAGTC	0.637			NA											20	38					0	0	0.004878	0	0
CCT8L2	150160	broad.mit.edu	37	22	17073318	17073318	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:17073318C>T	uc002zlp.1	-	1	383	c.123G>A	c.(121-123)CAG>CAA	p.Q41Q		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	41					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				TGGCCAGGGTCTGGACTGCAG	0.647			NA											10	40					0	0	0.006214	0	0
CECR5	27440	broad.mit.edu	37	22	17630584	17630584	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:17630584C>T	uc002zmf.2	-	2	206	c.178G>A	c.(178-180)GGC>AGC	p.G60S	CECR5_uc002zme.2_5'Flank|CECR5_uc002zmg.2_Intron|CECR5_uc002zmh.2_Missense_Mutation_p.G30S	NM_033070	NP_149061	Q9BXW7	CECR5_HUMAN	cat eye syndrome chromosome region, candidate 5	60							hydrolase activity				0		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)				ACTCTGTGGCCCCGCACAAGC	0.532			NA											17	47					0	0	0.007413	0	0
SLC25A18	83733	broad.mit.edu	37	22	18070036	18070036	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:18070036C>T	uc002zmp.1	+	8	1038	c.544C>T	c.(544-546)CTC>TTC	p.L182F	SLC25A18_uc010gqx.2_Missense_Mutation_p.L182F|SLC25A18_uc002zmq.1_Missense_Mutation_p.L182F	NM_031481	NP_113669	Q9H1K4	GHC2_HUMAN	solute carrier	182	Solcar 2.					integral to membrane|mitochondrial inner membrane	binding|symporter activity				0				Lung(27;0.124)	L-Glutamic Acid(DB00142)	CCTGGCTGGGCTCTACAGGGG	0.652	Colon(118;1560 1625 18964 29606 50093)		NA											12	48					0	0	0.004007	0	0
BCR	613	broad.mit.edu	37	22	23523546	23523546	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:23523546G>T	uc002zww.2	+	1	995	c.399G>T	c.(397-399)AGG>AGT	p.R133S	BCR_uc002zwx.2_Missense_Mutation_p.R133S	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	133	Kinase.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						CCGCCCGCAGGCCCGGGGCAG	0.801			NA	T	ABL1| FGFR1|JAK2 	CML|ALL|AML								4	12					0.00909568	0.00964006	0.009096	1	0
SEZ6L	23544	broad.mit.edu	37	22	26701995	26701995	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:26701995C>A	uc003acb.2	+	6	1555	c.1399C>A	c.(1399-1401)CCA>ACA	p.P467T	SEZ6L_uc003acc.2_Missense_Mutation_p.P467T|SEZ6L_uc011akc.1_Missense_Mutation_p.P467T|SEZ6L_uc003acd.2_Missense_Mutation_p.P467T|SEZ6L_uc011akd.1_Missense_Mutation_p.P467T|SEZ6L_uc003ace.2_Missense_Mutation_p.P467T|SEZ6L_uc003acf.1_Missense_Mutation_p.P240T|SEZ6L_uc010gvc.1_Missense_Mutation_p.P240T	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	467	CUB 2.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CGTCCTCTCCCCAAGTTACCC	0.512			NA											7	28					0.000157383	0.000182879	0.00308	1	0
LIMK2	3985	broad.mit.edu	37	22	31668610	31668610	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:31668610G>A	uc003akh.2	+	13	1623	c.1478G>A	c.(1477-1479)CGC>CAC	p.R493H	LIMK2_uc003akg.2_Missense_Mutation_p.R410H|LIMK2_uc003aki.2_Missense_Mutation_p.R247H|LIMK2_uc003akj.2_Missense_Mutation_p.R472H|LIMK2_uc003akk.2_Missense_Mutation_p.R472H|LIMK2_uc011aln.1_Missense_Mutation_p.R410H	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	493	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						ACCAAGAAACGCACCTTGCGC	0.582			NA											3	22					0	0	0.004672	0	0
KIAA1644	85352	broad.mit.edu	37	22	44692601	44692601	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:44692601C>G	uc003bet.2	-	3	365	c.232G>C	c.(232-234)GCG>CCG	p.A78P		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	78	Extracellular (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				TGCATCACCGCCTGGAACTCC	0.597			NA											38	98					0	0	0.006999	0	0
SBF1	6305	broad.mit.edu	37	22	50894717	50894717	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:50894717T>A	uc003blh.2	-	31	4389	c.4194A>T	c.(4192-4194)CCA>CCT	p.P1398P	SBF1_uc003ble.2_5'Flank|SBF1_uc003blf.2_5'Flank|SBF1_uc011arx.1_Silent_p.P1036P	NM_002972	NP_002963	O95248	MTMR5_HUMAN	SET binding factor 1	1372	Myotubularin phosphatase.				protein dephosphorylation	integral to membrane|nucleus	protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.206)|LUAD - Lung adenocarcinoma(64;0.247)		CGGGGCAGCCTGGGACACATG	0.637			NA											4	12					0	0	0.009096	0	0
TADA3	10474	broad.mit.edu	37	3	9832953	9832953	+	Silent	SNP	G	G	C	rs139007937		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:9832953G>C	uc003bsx.1	-	2	746	c.198C>G	c.(196-198)GCC>GCG	p.A66A	TADA3_uc010hcn.1_Silent_p.A66A|TADA3_uc003bsy.2_Silent_p.A66A|ARPC4_uc003bsz.1_5'Flank|ARPC4_uc003bta.1_5'Flank|ARPC4_uc003btb.1_5'Flank|ARPC4_uc003btc.1_5'Flank	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	66	Potential.				estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						CCTGGGTTTCGGCCTCAAGCA	0.592			NA											7	20					0	0	0.00308	0	0
CIDEC	63924	broad.mit.edu	37	3	9911574	9911574	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:9911574G>A	uc003btq.2	-	5	686	c.546C>T	c.(544-546)CGC>CGT	p.R182R	CIDEC_uc003bto.2_Intron|CIDEC_uc010hcp.2_Intron|CIDEC_uc003btp.2_Silent_p.R192R|CIDEC_uc003btr.2_Silent_p.R108R|CIDEC_uc003bts.2_Silent_p.R108R	NM_022094	NP_071377	Q96AQ7	CIDEC_HUMAN	cell death-inducing DFFA-like effector c	182					apoptosis|induction of apoptosis	cytosol|focal adhesion|nucleus				central_nervous_system(1)	1	Medulloblastoma(99;0.227)					ACTTCATGATGCGCTTGGCCC	0.532			NA											8	31					0	0	0.00308	0	0
IQSEC1	9922	broad.mit.edu	37	3	12950017	12950017	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:12950017C>G	uc003bxt.2	-	12	2638	c.2629G>C	c.(2629-2631)GAG>CAG	p.E877Q	IQSEC1_uc003bxu.3_Missense_Mutation_p.E755Q|IQSEC1_uc011auw.1_Missense_Mutation_p.E863Q	NM_014869	NP_055684	Q6DN90	IQEC1_HUMAN	IQ motif and Sec7 domain 1 isoform b	877	Potential.				regulation of ARF protein signal transduction	cytoplasm|nucleus	ARF guanyl-nucleotide exchange factor activity			ovary(1)	1						TTCTGCTTCTCGAGCTCCGCT	0.627			NA											41	64					0	0	0.009718	0	0
GRIP2	80852	broad.mit.edu	37	3	14583449	14583449	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:14583449G>C	uc011avi.1	-	1	140	c.140C>G	c.(139-141)CCT>CGT	p.P47R	GRIP2_uc011avh.1_5'Flank|GRIP2_uc003byv.1_5'Flank	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	Error:Variant_position_missing_in_Q9C0E4_after_alignment					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						GCCTTCACCAGGGCACAGAGG	0.587			NA											3	3					0	0	0.004672	0	0
KCNH8	131096	broad.mit.edu	37	3	19389399	19389399	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:19389399G>C	uc003cbk.1	+	5	948	c.753G>C	c.(751-753)CTG>CTC	p.L251L	KCNH8_uc011awe.1_Silent_p.L251L|KCNH8_uc010hex.1_5'UTR	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	251	Extracellular (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						ATGACGACCTGTCCACAACTC	0.423	NSCLC(124;1625 1765 8018 24930 42026)		NA											19	48					0	0	0.007413	0	0
KCNH8	131096	broad.mit.edu	37	3	19559492	19559492	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:19559492C>G	uc003cbk.1	+	15	2740	c.2545C>G	c.(2545-2547)CCA>GCA	p.P849A	KCNH8_uc010hex.1_Missense_Mutation_p.P310A	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	849	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						CTTTTCAGATCCAGAGATTGG	0.413	NSCLC(124;1625 1765 8018 24930 42026)		NA											12	29					0	0	0.001855	0	0
KCNH8	131096	broad.mit.edu	37	3	19575573	19575573	+	Missense_Mutation	SNP	C	C	A	rs74606615		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:19575573C>A	uc003cbk.1	+	16	3501	c.3306C>A	c.(3304-3306)AAC>AAA	p.N1102K	KCNH8_uc010hex.1_Missense_Mutation_p.N563K	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	1102	Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						TGAAAGATAACAAAGCCATAA	0.438	NSCLC(124;1625 1765 8018 24930 42026)		NA											9	10					0.000442599	0.000502282	0.006214	1	0
FBXL2	25827	broad.mit.edu	37	3	33419616	33419616	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:33419616A>C	uc003cfp.2	+	12	942	c.871A>C	c.(871-873)ATG>CTG	p.M291L	FBXL2_uc011axm.1_RNA|FBXL2_uc011axn.1_RNA|FBXL2_uc011axo.1_Missense_Mutation_p.M186L|FBXL2_uc011axp.1_Missense_Mutation_p.M207L|FBXL2_uc011axq.1_RNA|FBXL2_uc011axr.1_RNA|FBXL2_uc011axs.1_RNA	NM_012157	NP_036289	Q9UKC9	FBXL2_HUMAN	F-box and leucine-rich repeat protein 2	291	LRR 9.				interspecies interaction between organisms|proteolysis	cytoplasm|membrane	protein binding|ubiquitin-protein ligase activity			large_intestine(1)	1						ATTGGAGAAGATGGATCTTGA	0.542			NA											16	22					0	0	0.003163	0	0
TRANK1	9881	broad.mit.edu	37	3	36896947	36896947	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:36896947C>G	uc003cgj.2	-	3	2786	c.2484G>C	c.(2482-2484)TCG>TCC	p.S828S		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1378					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CCCTGAGCTTCGACAGCCTCC	0.493			NA											38	69					0	0	0.003755	0	0
TRANK1	9881	broad.mit.edu	37	3	36899193	36899193	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:36899193C>A	uc003cgj.2	-	3	540	c.238G>T	c.(238-240)GGT>TGT	p.G80C		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	630					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GATGTGTGACCAGGGGCAGTG	0.577			NA											27	62					6.32553e-13	1.04402e-12	0.004656	1	0
XYLB	9942	broad.mit.edu	37	3	38404451	38404451	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:38404451G>C	uc003cic.2	+	4	343	c.234G>C	c.(232-234)AAG>AAC	p.K78N	XYLB_uc011ayp.1_Intron|XYLB_uc003cid.1_5'UTR	NM_005108	NP_005099	O75191	XYLB_HUMAN	xylulokinase	78					D-xylose metabolic process|generation of precursor metabolites and energy|xylulose catabolic process		ATP binding|xylulokinase activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.00372)|Kidney(284;0.00405)		TCTTGGAGAAGATGAAGGCTT	0.512			NA											22	51					0	0	0.002299	0	0
SCN11A	11280	broad.mit.edu	37	3	38888354	38888354	+	Missense_Mutation	SNP	C	C	A	rs143852849	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:38888354C>A	uc011ays.1	-	26	5406	c.5207G>T	c.(5206-5208)GGT>GTT	p.G1736V		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1736					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AATAGCAGCACCTCTTTCCTC	0.363			NA											18	62					3.32936e-07	4.48132e-07	0.006122	1	0
SCN11A	11280	broad.mit.edu	37	3	38888539	38888539	+	Missense_Mutation	SNP	C	C	A	rs148011334		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:38888539C>A	uc011ays.1	-	26	5221	c.5022G>T	c.(5020-5022)ATG>ATT	p.M1674I		NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	1674					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CTTCACTCACCATGGGCAAGT	0.463			NA											9	38					2.17888e-05	2.68607e-05	0.006214	1	0
CCBP2	1238	broad.mit.edu	37	3	42906417	42906417	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:42906417C>A	uc003cme.2	+	3	602	c.423C>A	c.(421-423)GAC>GAA	p.D141E	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmf.2_Missense_Mutation_p.D141E|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_001296	NP_001287	O00590	CCBP2_HUMAN	chemokine binding protein 2	141	Cytoplasmic (Potential).				chemotaxis|immune response|multicellular organismal development	integral to plasma membrane	C-X-C chemokine receptor activity			lung(4)|skin(1)	5				KIRC - Kidney renal clear cell carcinoma(284;0.241)		TGAGCCTGGACAAGTACCTGG	0.517			NA											21	90					1.22574e-08	1.77341e-08	0.002299	1	0
UQCRC1	7384	broad.mit.edu	37	3	48643287	48643287	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:48643287C>T	uc003cub.1	-	3	258	c.213G>A	c.(211-213)GTG>GTA	p.V71V	UQCRC1_uc003cua.1_5'UTR|UQCRC1_uc003cuc.1_Silent_p.V71V|UQCRC1_uc003cud.1_Silent_p.V71V	NM_003365	NP_003356	P31930	QCR1_HUMAN	ubiquinol-cytochrome c reductase core protein I	71					aerobic respiration|proteolysis		metalloendopeptidase activity|ubiquinol-cytochrome-c reductase activity|zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)	Atovaquone(DB01117)	TCCACACTCCCACCTGGTCAA	0.517	NSCLC(81;1112 1427 27031 32409 45529)		NA											12	37					0	0	0.001368	0	0
NCKIPSD	51517	broad.mit.edu	37	3	48717147	48717147	+	Splice_Site	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:48717147C>A	uc003cun.2	-	8	1445	c.1351_splice	c.e8-1	p.E451_splice	NCKIPSD_uc003cum.2_Splice_Site_p.E444_splice	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform						cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CTCGGTGTTCCTGGCAGGGAA	0.582			NA											8	18					0.000157383	0.000182879	0.00308	1	0
LAMB2	3913	broad.mit.edu	37	3	49163401	49163401	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:49163401C>T	uc003cwe.2	-	17	2642	c.2343G>A	c.(2341-2343)CTG>CTA	p.L781L	LAMB2_uc003cwf.1_Silent_p.L781L	NM_002292	NP_002283	P55268	LAMB2_HUMAN	laminin, beta 2 precursor	781					cell adhesion	laminin-11 complex|laminin-3 complex	structural molecule activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00219)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GACACTCACGCAGGGCACCAT	0.607			NA											9	32					0	0	0.006214	0	0
BSN	8927	broad.mit.edu	37	3	49690234	49690234	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:49690234G>A	uc003cxe.3	+	5	3359	c.3245G>A	c.(3244-3246)CGG>CAG	p.R1082Q		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1082	Potential.				synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GAAGAACTGCGGGCCCAGCGG	0.657			NA											5	40					0	0	0.000602	0	0
DOCK3	1795	broad.mit.edu	37	3	51399971	51399971	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:51399971A>T	uc011bds.1	+	49	5182	c.5159A>T	c.(5158-5160)AAC>ATC	p.N1720I		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1720						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		GCGTATCCCAACCCCAGGTAC	0.547			NA											12	26					0	0	0.001855	0	0
VPRBP	9730	broad.mit.edu	37	3	51458159	51458159	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:51458159C>A	uc003dbe.1	-	14	2433	c.2265G>T	c.(2263-2265)CGG>CGT	p.R755R	VPRBP_uc003dbf.1_Silent_p.R31R	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	755					interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		AGGCCAGGGCCCGGATTTGGT	0.552			NA											23	79					4.26978e-12	6.84776e-12	0.00333	1	0
GRM2	2912	broad.mit.edu	37	3	51746995	51746995	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:51746995G>T	uc010hlv.2	+	3	1196	c.957G>T	c.(955-957)CTG>CTT	p.L319L	GRM2_uc003dbo.3_Intron|GRM2_uc010hlu.2_RNA	NM_000839	NP_000830	Q14416	GRM2_HUMAN	glutamate receptor, metabotropic 2 isoform a	319	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000539)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Acamprosate(DB00659)|Nicotine(DB00184)	CCATCGAGCTGGCCTCCTACC	0.612			NA											10	24					1.04858e-14	1.82082e-14	0.006214	1	0
PARP3	10039	broad.mit.edu	37	3	51981799	51981799	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:51981799C>G	uc003dby.2	+	10	1691	c.1320C>G	c.(1318-1320)TTC>TTG	p.F440L	PARP3_uc003dbz.2_Missense_Mutation_p.F447L	NM_005485	NP_005476	Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	440	PARP catalytic.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GCTACATGTTCCTGGGTGAGG	0.612			NA											25	64					0	0	0.00333	0	0
DNAH1	25981	broad.mit.edu	37	3	52412653	52412653	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:52412653C>T	uc011bef.1	+	47	7495	c.7234C>T	c.(7234-7236)CTT>TTT	p.L2412F		NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	2412	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		CACGGAGCCCCTTGTGGAAGC	0.617			NA											31	93					0	0	0.008361	0	0
GXYLT2	727936	broad.mit.edu	37	3	73016750	73016750	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:73016750G>T	uc003dpg.2	+	6	1029	c.1029G>T	c.(1027-1029)ATG>ATT	p.M343I		NM_001080393	NP_001073862	A0PJZ3	GXLT2_HUMAN	glycosyltransferase 8 domain containing 4	343	Lumenal (Potential).				O-glycan processing	integral to membrane	UDP-xylosyltransferase activity				0						ATCACTGCATGTACGGAAGCA	0.502			NA											3	15					0.00909568	0.00964006	0.009096	1	0
ROBO1	6091	broad.mit.edu	37	3	79638972	79638972	+	Splice_Site	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:79638972A>T	uc003dqe.2	-	2	296	c.88_splice	c.e2+1	p.D30_splice		NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a						activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		CACAGCACTTACCTGGAATAA	0.368			NA											21	42					0	0	0.002299	0	0
VGLL3	389136	broad.mit.edu	37	3	87017913	87017913	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:87017913A>T	uc003dqn.2	-	3	1128	c.764T>A	c.(763-765)CTG>CAG	p.L255Q		NM_016206	NP_057290	A8MV65	VGLL3_HUMAN	colon carcinoma related protein	255					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0	all_cancers(8;0.109)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00241)|Lung(72;0.00712)		GGATGGATCCAGGGCAGAGCC	0.468			NA											19	27					0	0	0.007413	0	0
PROS1	5627	broad.mit.edu	37	3	93646175	93646175	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:93646175C>A	uc003drb.3	-	2	494	c.153G>T	c.(151-153)CAG>CAT	p.Q51H	PROS1_uc010hoo.2_Translation_Start_Site|PROS1_uc003dqz.3_Translation_Start_Site	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	51	Gla.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	CAAGATTACCCTGTTTGGTTT	0.398			NA											16	34					6.72482e-11	1.04404e-10	0.003163	1	0
OR5H6	79295	broad.mit.edu	37	3	97983944	97983944	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:97983944C>A	uc003dsi.1	+	1	816	c.816C>A	c.(814-816)ACC>ACA	p.T272T		NM_001005479	NP_001005479	Q8NGV6	OR5H6_HUMAN	olfactory receptor, family 5, subfamily H,	272	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3						GCCCCCTCACCTTCAAATATC	0.408			NA											7	33					8.12818e-05	9.60912e-05	0.001984	1	0
ZBTB11	27107	broad.mit.edu	37	3	101384009	101384010	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:101384009_101384010CC>AA	uc003dve.3	-	4	1651_1652	c.1421_1422GG>TT	c.(1420-1422)AGG>ATT	p.R474I		NM_014415	NP_055230	O95625	ZBT11_HUMAN	zinc finger protein ZNF-U69274	474					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						CAACTTTCTGCCTATGTTTTGG	0.396			NA											26	76					0	0	0.004672	0	0
CD200R1	131450	broad.mit.edu	37	3	112648206	112648206	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:112648206C>A	uc003dzk.1	-	3	515	c.282G>T	c.(280-282)GAG>GAT	p.E94D	CD200R1_uc003dzj.1_Missense_Mutation_p.E117D|CD200R1_uc011bhx.1_Missense_Mutation_p.E72D|CD200R1_uc003dzl.1_Missense_Mutation_p.E117D|CD200R1_uc003dzm.1_Missense_Mutation_p.E94D	NM_170780	NP_740750	Q8TD46	MO2R1_HUMAN	CD200 receptor 1 isoform d	94	Ig-like V-type.|Extracellular (Potential).				interspecies interaction between organisms|regulation of immune response	extracellular region|integral to membrane|plasma membrane	receptor activity			ovary(2)|pancreas(1)	3						TTTCCTTGGTCTCATTTGTTT	0.448			NA											10	44					6.40141e-05	7.65288e-05	0.010729	1	0
CCDC52	152185	broad.mit.edu	37	3	113188063	113188063	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:113188063C>A	uc003eag.3	-	8	925	c.634G>T	c.(634-636)GAG>TAG	p.E212*	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Nonsense_Mutation_p.E108*	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	212					cell division|mitosis	centriole|spindle	protein binding				0						TCAAAATTCTCTTCTGTTAGT	0.294			NA											12	33					4.36969e-10	6.60896e-10	0.001855	1	0
ZNF80	7634	broad.mit.edu	37	3	113955509	113955509	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:113955509C>A	uc010hqo.2	-	1	917	c.413G>T	c.(412-414)TGT>TTT	p.C138F	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	138	C2H2-type 4.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				GGTCTTTCCACACTCGCTGCA	0.512	GBM(23;986 1114 21716)		NA											9	24					1.58986e-06	2.08065e-06	0.008291	1	0
C3orf15	89876	broad.mit.edu	37	3	119445164	119445164	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:119445164G>T	uc003ede.3	+	7	906	c.829G>T	c.(829-831)GAG>TAG	p.E277*	C3orf15_uc010hqy.1_Nonsense_Mutation_p.E277*|C3orf15_uc010hqz.2_Nonsense_Mutation_p.E215*|C3orf15_uc011bjd.1_Nonsense_Mutation_p.E151*|C3orf15_uc011bje.1_Nonsense_Mutation_p.E257*|C3orf15_uc010hra.1_Nonsense_Mutation_p.E38*	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	277	Potential.					mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GGAGAGGAAGGAGTGGGCCTT	0.488			NA											7	16					5.18039e-06	6.58689e-06	0.00308	1	0
STXBP5L	9515	broad.mit.edu	37	3	120871405	120871405	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:120871405G>A	uc003eec.3	+	8	891	c.751G>A	c.(751-753)GAG>AAG	p.E251K	STXBP5L_uc011bji.1_Missense_Mutation_p.E251K	NM_014980	NP_055795	Q9Y2K9	STB5L_HUMAN	syntaxin binding protein 5-like	251					exocytosis|protein transport	cytoplasm|integral to membrane|plasma membrane				ovary(7)|skin(2)	9				GBM - Glioblastoma multiforme(114;0.0694)		TTATTATGATGAGGTAAGTGA	0.353			NA											8	33					0	0	0.006214	0	0
POLQ	10721	broad.mit.edu	37	3	121187155	121187155	+	Missense_Mutation	SNP	C	C	A	rs146701093	by1000genomes	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:121187155C>A	uc003eee.3	-	23	6971	c.6842G>T	c.(6841-6843)GGC>GTC	p.G2281V	POLQ_uc003eed.2_Missense_Mutation_p.G1453V	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	2281					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		CACCTACCTGCCCATGGGAAG	0.348	Pancreas(152;907 1925 26081 31236 36904)		NA						DNA_polymerases_(catalytic_subunits)					21	64					5.26018e-13	8.69874e-13	0.012319	1	0
POLQ	10721	broad.mit.edu	37	3	121212454	121212454	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:121212454C>G	uc003eee.3	-	15	2522	c.2393G>C	c.(2392-2394)CGG>CCG	p.R798P	POLQ_uc003eed.2_5'Flank	NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	798					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		TAAGGATACCCGAACCAGGTC	0.493	Pancreas(152;907 1925 26081 31236 36904)		NA						DNA_polymerases_(catalytic_subunits)					17	14					0	0	0.004007	0	0
SEC22A	26984	broad.mit.edu	37	3	122928212	122928212	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:122928212A>T	uc003ege.2	+	2	227	c.148A>T	c.(148-150)AGA>TGA	p.R50*	SEC22A_uc003egf.2_Nonsense_Mutation_p.R50*	NM_012430	NP_036562	Q96IW7	SC22A_HUMAN	SEC22 vesicle trafficking protein homolog A	50	Cytoplasmic (Potential).|Longin.				ER to Golgi vesicle-mediated transport|protein transport	endoplasmic reticulum membrane|integral to membrane	transporter activity			ovary(1)	1				GBM - Glioblastoma multiforme(114;0.0548)		ACTTCCTGATAGATGTACACT	0.358			NA											14	15					0	0	0.00245	0	0
CCDC14	64770	broad.mit.edu	37	3	123665764	123665764	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:123665764C>A	uc011bjx.1	-	8	1322	c.1231G>T	c.(1231-1233)GAT>TAT	p.D411Y	CCDC14_uc003egv.3_Intron|CCDC14_uc003egx.3_Missense_Mutation_p.D211Y|CCDC14_uc010hrt.2_Missense_Mutation_p.D370Y|CCDC14_uc003egy.3_Missense_Mutation_p.D211Y|CCDC14_uc003egz.2_Missense_Mutation_p.D211Y	NM_022757	NP_073594	Q49A88	CCD14_HUMAN	coiled-coil domain containing 14	411	Potential.					centrosome					0		Lung NSC(201;0.0371)|Prostate(884;0.0405)|Myeloproliferative disorder(1037;0.205)		Lung(219;0.00942)|GBM - Glioblastoma multiforme(114;0.159)		GTTTTTGTATCTCGCACATGT	0.383			NA											31	80					8.88839e-20	1.63531e-19	0.010818	1	0
CCDC37	348807	broad.mit.edu	37	3	126135295	126135295	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:126135295C>A	uc003eiu.1	+	5	461	c.362C>A	c.(361-363)GCC>GAC	p.A121D	CCDC37_uc010hsg.1_Missense_Mutation_p.A121D	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	121	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		CGCGCCGAGGCCGAGCATCAG	0.677			NA											4	21					0.00024832	0.000286393	0.009096	1	0
BFSP2	8419	broad.mit.edu	37	3	133118939	133118939	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:133118939G>A	uc003epn.1	+	1	150	c.12G>A	c.(10-12)AGG>AGA	p.R4R		NM_003571	NP_003562	Q13515	BFSP2_HUMAN	phakinin	4	Head.				response to stimulus|visual perception	cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens				0						TGAGTGAGAGGCGAGTGGTAG	0.622			NA											4	60					0	0	0.009096	0	0
TF	7018	broad.mit.edu	37	3	133467322	133467322	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:133467322A>T	uc003epu.1	+	7	1838	c.110A>T	c.(109-111)AAG>ATG	p.K37M	TF_uc011bls.1_Missense_Mutation_p.K37M|TF_uc011blt.1_Intron|TF_uc003epw.1_Missense_Mutation_p.K37M|TF_uc010htv.1_RNA|TF_uc003epv.1_Missense_Mutation_p.K37M	NM_001063	NP_001054	P02787	TRFE_HUMAN	transferrin precursor	37	Transferrin-like 1.				cellular iron ion homeostasis|platelet activation|platelet degranulation|transferrin transport|transmembrane transport	apical plasma membrane|basal plasma membrane|coated pit|early endosome|endocytic vesicle|endosome membrane|extracellular region|late endosome|perinuclear region of cytoplasm|recycling endosome|stored secretory granule	ferric iron binding			ovary(1)|skin(1)	2					Aluminium(DB01370)|Bismuth(DB01402)|Iron Dextran(DB00893)	GAGGCCACTAAGTGCCAGAGT	0.557			NA											17	29					0	0	0.00499	0	0
SLCO2A1	6578	broad.mit.edu	37	3	133664069	133664069	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:133664069C>G	uc003eqa.3	-	10	1605	c.1331G>C	c.(1330-1332)TGC>TCC	p.C444S	SLCO2A1_uc003eqb.3_Missense_Mutation_p.C368S|SLCO2A1_uc011blv.1_Missense_Mutation_p.C263S	NM_005630	NP_005621	Q92959	SO2A1_HUMAN	solute carrier organic anion transporter family,	444	Extracellular (Potential).|Kazal-like.				sodium-independent organic anion transport	integral to plasma membrane|membrane fraction	prostaglandin transmembrane transporter activity|protein binding			central_nervous_system(1)	1						GTCCCTGCGGCAGGCAGGAGA	0.532			NA											27	148					0	0	0.005443	0	0
EPHB1	2047	broad.mit.edu	37	3	134968220	134968220	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:134968220G>T	uc003eqt.2	+	15	2953	c.2733G>T	c.(2731-2733)ACG>ACT	p.T911T	EPHB1_uc003equ.2_Silent_p.T472T	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	911	Cytoplasmic (Potential).|SAM.					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						CAGACTTCACGGCCTTTACCA	0.602			NA											26	17					1.85244e-09	2.75516e-09	0.00333	1	0
DZIP1L	199221	broad.mit.edu	37	3	137786534	137786534	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:137786534G>T	uc003erq.2	-	14	2204	c.1841C>A	c.(1840-1842)CCG>CAG	p.P614Q		NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	614						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						AGAACTGAACGGGGGCGTGCT	0.547			NA											5	18					1.23904e-05	1.53974e-05	0.000602	1	0
CLSTN2	64084	broad.mit.edu	37	3	140282886	140282886	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:140282886C>A	uc003etn.2	+	16	2756	c.2566C>A	c.(2566-2568)CGG>AGG	p.R856R		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	856	Cytoplasmic (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						GTACCGGGTCCGGATCGCCCA	0.542	GBM(45;858 913 3709 36904 37282)		NA								HNSCC(16;0.037)			36	72					4.3181e-19	7.8933e-19	0.002836	1	0
RASA2	5922	broad.mit.edu	37	3	141304930	141304930	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:141304930C>T	uc003etz.1	+	18	1816	c.1816C>T	c.(1816-1818)CTG>TTG	p.L606L	RASA2_uc010huq.1_Silent_p.L606L|RASA2_uc003eua.1_Silent_p.L606L|RASA2_uc011bnc.1_Silent_p.L198L	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	606	PH.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						GCCTGTGCACCTGAAAGAAGG	0.289			NA											8	8					0	0	0.004482	0	0
ZIC4	84107	broad.mit.edu	37	3	147120515	147120515	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:147120515T>A	uc003ewd.1	-	2	343	c.70A>T	c.(70-72)AGT>TGT	p.S24C	ZIC4_uc011bno.1_Missense_Mutation_p.S74C	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	24	Poly-Ser.					nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						TTTAACTTACTTGACTCTTTA	0.303			NA											16	39					0	0	0.008871	0	0
ZIC1	7545	broad.mit.edu	37	3	147131292	147131292	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:147131292C>A	uc003ewe.2	+	3	2017	c.1298C>A	c.(1297-1299)GCC>GAC	p.A433D		NM_003412	NP_003403	Q15915	ZIC1_HUMAN	zinc finger protein of the cerebellum 1	433	Ser-rich.				behavior|brain development|cell differentiation|inner ear morphogenesis|pattern specification process|positive regulation of protein import into nucleus|positive regulation of transcription, DNA-dependent|regulation of smoothened signaling pathway	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CACCACACAGCCGGCCACAGT	0.512			NA											9	48					0.000274275	0.000314197	0.004482	1	0
FAM194A	131831	broad.mit.edu	37	3	150403781	150403781	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:150403781G>A	uc003eyg.2	-	5	695	c.638C>T	c.(637-639)TCG>TTG	p.S213L	FAM194A_uc003eyh.2_Missense_Mutation_p.S67L	NM_152394	NP_689607	Q7L0X2	F194A_HUMAN	hypothetical protein LOC131831	213										skin(2)|ovary(1)	3						ATTTAGTTTCGACTCTTCTGG	0.308			NA											16	41					0	0	0.004007	0	0
SI	6476	broad.mit.edu	37	3	164724632	164724632	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:164724632C>A	uc003fei.2	-	37	4440	c.4378G>T	c.(4378-4380)GGA>TGA	p.G1460*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1460	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGTGACCATCCATAGAGATTG	0.343			NA								HNSCC(35;0.089)			3	15					6.4e-05	7.65288e-05	0.004672	1	0
SI	6476	broad.mit.edu	37	3	164764657	164764657	+	Missense_Mutation	SNP	A	A	T	rs121912613		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:164764657A>T	uc003fei.2	-	16	1921	c.1859T>A	c.(1858-1860)CTG>CAG	p.L620Q		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	620	Lumenal.|Isomaltase.		L -> P (in CSID; SI accumulates predominantly in the ER).		carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACTGAACTCCAGCATTCCAGT	0.363			NA								HNSCC(35;0.089)			11	43					0	0	0.003163	0	0
WDR49	151790	broad.mit.edu	37	3	167245610	167245610	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:167245610G>A	uc003fev.1	-	11	1852	c.1546C>T	c.(1546-1548)CAG>TAG	p.Q516*	WDR49_uc003feu.1_Nonsense_Mutation_p.Q341*|WDR49_uc011bpd.1_Intron|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	516										large_intestine(1)|ovary(1)|skin(1)	3						ATTTCTACCTGACCAAAGATC	0.383			NA											6	18					0	0	0.001168	0	0
TNIK	23043	broad.mit.edu	37	3	170912349	170912349	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:170912349C>G	uc003fhh.2	-	5	727	c.382G>C	c.(382-384)GAG>CAG	p.E128Q	TNIK_uc003fhi.2_Missense_Mutation_p.E128Q|TNIK_uc003fhj.2_Missense_Mutation_p.E128Q|TNIK_uc003fhk.2_Missense_Mutation_p.E128Q|TNIK_uc003fhl.2_Missense_Mutation_p.E128Q|TNIK_uc003fhm.2_Missense_Mutation_p.E128Q|TNIK_uc003fhn.2_Missense_Mutation_p.E128Q|TNIK_uc003fho.2_Missense_Mutation_p.E128Q	NM_015028	NP_055843	Q9UKE5	TNIK_HUMAN	TRAF2 and NCK interacting kinase isoform 1	128	Protein kinase.				actin cytoskeleton reorganization|activation of JNKK activity|protein autophosphorylation|regulation of dendrite morphogenesis|Wnt receptor signaling pathway	cytoskeleton|nucleus|recycling endosome	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(4)|large_intestine(1)	5	all_cancers(22;2.55e-19)|all_lung(20;2.22e-14)|Ovarian(172;0.00197)|Breast(254;0.122)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)			GCAATCCACTCCTCTTTCAAC	0.478			NA											17	236					0	0	0.00499	0	0
TBL1XR1	79718	broad.mit.edu	37	3	176765161	176765161	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:176765161T>A	uc003fiw.3	-	9	1051	c.791A>T	c.(790-792)CAG>CTG	p.Q264L	TBL1XR1_uc003fix.3_Missense_Mutation_p.Q264L|TBL1XR1_uc011bpz.1_5'UTR	NM_024665	NP_078941	Q9BZK7	TBL1R_HUMAN	transducin (beta)-like 1 X-linked receptor 1	264	WD 3.				canonical Wnt receptor signaling pathway|cellular lipid metabolic process|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|proteasomal ubiquitin-dependent protein catabolic process|transcription, DNA-dependent	spindle microtubule|transcriptional repressor complex	beta-catenin binding|histone binding|protein N-terminus binding|transcription corepressor activity|transcription regulatory region DNA binding			ovary(1)	1	all_cancers(143;1.44e-17)|Ovarian(172;0.00163)|Breast(254;0.214)	Acute lymphoblastic leukemia(1;0.00599)|all_hematologic(1;0.0632)|Prostate(884;0.215)	OV - Ovarian serous cystadenocarcinoma(80;9.83e-31)			GCCTTTATGCTGCCCTAAGGT	0.318			NA											4	6					0	0	0.009096	0	0
PIK3CA	5290	broad.mit.edu	37	3	178947861	178947861	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:178947861A>T	uc003fjk.2	+	19	2893	c.2736A>T	c.(2734-2736)GGA>GGT	p.G912G		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	912	PI3K/PI4K.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TCATTTTGGGAATTGGAGATC	0.363	Colon(199;1504 1750 3362 26421 31210 32040)		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			12	118					0	0	0.010729	0	0
BCL6	604	broad.mit.edu	37	3	187447539	187447539	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:187447539C>A	uc003frp.3	-	5	1111	c.654G>T	c.(652-654)ATG>ATT	p.M218I	BCL6_uc011bsf.1_Missense_Mutation_p.M218I|BCL6_uc010hza.2_Missense_Mutation_p.M116I|BCL6_uc003frq.1_Missense_Mutation_p.M218I	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	218					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		TGGCCACAGGCATCCGGACAT	0.617			NA	T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								6	17					0.00116845	0.00129404	0.001168	1	0
TP63	8626	broad.mit.edu	37	3	189455623	189455623	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:189455623G>C	uc003fry.2	+	2	246	c.157G>C	c.(157-159)GAG>CAG	p.E53Q	TP63_uc003frx.2_Missense_Mutation_p.E53Q|TP63_uc003frz.2_Missense_Mutation_p.E53Q|TP63_uc010hzc.1_Missense_Mutation_p.E53Q	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	53	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		CCTCAGTCCAGAGGTTTTCCA	0.388			NA							Hay-Wells_syndrome	HNSCC(45;0.13)			9	30					0	0	0.004482	0	0
PYDC2	152138	broad.mit.edu	37	3	191179241	191179241	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:191179241C>A	uc011bso.1	+	1	290	c.290C>A	c.(289-291)CCT>CAT	p.P97H		NM_001083308	NP_001076777	Q56P42	PYDC2_HUMAN	pyrin domain containing 2	97						cytoplasm|nucleus					0						ATGCCCCCACCTTAACCCCTC	0.483			NA											16	64					5.3912e-06	6.83959e-06	0.006122	1	0
PIGG	54872	broad.mit.edu	37	4	494291	494291	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:494291G>A	uc003gak.3	+	2	397	c.261G>A	c.(259-261)GTG>GTA	p.V87V	PIGG_uc003gaj.3_Silent_p.V87V|PIGG_uc011bux.1_RNA|PIGG_uc010ibf.2_Silent_p.V87V|PIGG_uc003gal.3_5'UTR|ZNF721_uc003gag.2_5'Flank|ZNF721_uc010ibe.2_5'Flank|ZNF721_uc003gah.1_5'Flank|PIGG_uc003gai.2_RNA|PIGG_uc011buw.1_5'UTR|PIGG_uc003gam.2_5'UTR|PIGG_uc003gan.2_5'UTR	NM_001127178	NP_001120650	Q5H8A4	PIGG_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	87	Lumenal (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	CP2 mannose-ethanolamine phosphotransferase activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CAAAGGGTGTGAAATTTATGC	0.438			NA											14	33					0	0	0.003163	0	0
MAEA	10296	broad.mit.edu	37	4	1309328	1309328	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:1309328C>T	uc003gda.2	+	3	426	c.396C>T	c.(394-396)CAC>CAT	p.H132H	MAEA_uc010ibs.1_Silent_p.H132H|MAEA_uc003gdb.2_Silent_p.H132H|MAEA_uc011bvb.1_Intron|MAEA_uc003gdc.2_Silent_p.H132H|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Silent_p.H131H|MAEA_uc011bvd.1_Silent_p.H84H|MAEA_uc010ibt.2_Silent_p.H8H	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	132	LisH.				cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			TGGTGGAGCACCTGCTGCGTT	0.672			NA											25	46					0	0	0.004656	0	0
WHSC2	7469	broad.mit.edu	37	4	1985073	1985073	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:1985073C>A	uc003gem.2	-	11	1833	c.1593G>T	c.(1591-1593)AAG>AAT	p.K531N	WHSC2_uc003gek.2_Missense_Mutation_p.K257N|WHSC2_uc003gel.2_Missense_Mutation_p.K445N|WHSC2_uc003gen.2_Missense_Mutation_p.K385N	NM_005663	NP_005654	Q9H3P2	NELFA_HUMAN	Wolf-Hirschhorn syndrome candidate 2 protein	520					multicellular organismal development|positive regulation of viral transcription|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm				skin(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.0155)			TGGGCTTGTACTTCTTGAAGC	0.577			NA											6	56					2.0095e-06	2.62175e-06	0.001984	1	0
ZFYVE28	57732	broad.mit.edu	37	4	2306845	2306845	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:2306845C>G	uc003gex.1	-	8	1541	c.1222G>C	c.(1222-1224)GGG>CGG	p.G408R	ZFYVE28_uc011bvk.1_Missense_Mutation_p.G338R|ZFYVE28_uc011bvl.1_Missense_Mutation_p.G378R|ZFYVE28_uc003gew.1_Missense_Mutation_p.G294R	NM_020972	NP_066023	Q9HCC9	LST2_HUMAN	zinc finger, FYVE domain containing 28	408					negative regulation of epidermal growth factor receptor activity	cytosol|early endosome membrane	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			skin(2)|ovary(1)	3						TCTGCCGTCCCCTCCACGTCA	0.701			NA											30	28					0	0	0.009535	0	0
HGFAC	3083	broad.mit.edu	37	4	3443844	3443844	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:3443844G>T	uc003ghc.2	+	1	119	c.116G>T	c.(115-117)GGG>GTG	p.G39V	HGFAC_uc010icw.2_Missense_Mutation_p.G39V	NM_001528	NP_001519	Q04756	HGFA_HUMAN	HGF activator preproprotein	39					proteolysis	extracellular space	protein binding|serine-type endopeptidase activity			central_nervous_system(2)	2				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		CAGCCTGGCGGGGTGAGCACT	0.706			NA											16	26					8.60227e-14	1.44648e-13	0.004007	1	0
EVC2	132884	broad.mit.edu	37	4	5620325	5620325	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:5620325C>G	uc003gij.2	-	15	2640	c.2586G>C	c.(2584-2586)ATG>ATC	p.M862I	EVC2_uc011bwb.1_Missense_Mutation_p.M302I|EVC2_uc003gik.2_Missense_Mutation_p.M782I	NM_147127	NP_667338	Q86UK5	LBN_HUMAN	limbin	862						integral to membrane				large_intestine(3)|ovary(2)	5						AGCTCCTGTCCATCTGAGCAA	0.592			NA											9	9					0	0	0.004482	0	0
C4orf50	389197	broad.mit.edu	37	4	5961151	5961151	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:5961151A>T	uc003git.1	-	7	872	c.782T>A	c.(781-783)ATT>AAT	p.I261N		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	261										pancreas(2)|breast(1)	3						ATTGCTGCAAATGCTTTGTCT	0.488			NA											13	39					0	0	0.001855	0	0
ZNF518B	85460	broad.mit.edu	37	4	10446546	10446546	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:10446546C>A	uc003gmn.2	-	3	1894	c.1407G>T	c.(1405-1407)TTG>TTT	p.L469F		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	469					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						TATGTGGATACAAATTATTTT	0.333			NA											5	22					0.00116845	0.00129404	0.001168	1	0
CPEB2	132864	broad.mit.edu	37	4	15009984	15009984	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:15009984C>A	uc003gni.1	+	3	743	c.656C>A	c.(655-657)CCA>CAA	p.P219Q	CPEB2_uc003gnj.1_Intron|CPEB2_uc003gnk.1_Missense_Mutation_p.P219Q|CPEB2_uc003gnl.1_Intron|CPEB2_uc003gnm.1_Intron|CPEB2_uc003gnn.1_Intron	NM_182485	NP_872291	Q7Z5Q1	CPEB2_HUMAN	cytoplasmic polyadenylation element binding	219					regulation of translation	cytoplasm	nucleotide binding|RNA binding			skin(1)	1						TTGCAGTTGCCAGCTTGGGGC	0.443			NA											6	24					2.7689e-08	3.94231e-08	0.001984	1	0
PACRGL	133015	broad.mit.edu	37	4	20728923	20728923	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:20728923A>T	uc010iek.2	+	9	1097	c.706A>T	c.(706-708)ATC>TTC	p.I236F	PACRGL_uc003gpu.2_RNA|PACRGL_uc003gpz.2_Missense_Mutation_p.I209F|PACRGL_uc011bxm.1_3'UTR|PACRGL_uc003gqa.2_Missense_Mutation_p.I111F|PACRGL_uc003gpx.3_RNA|PACRGL_uc003gpv.2_Missense_Mutation_p.I209F|PACRGL_uc003gpw.2_RNA|PACRGL_uc011bxn.1_Missense_Mutation_p.I111F|PACRGL_uc003gpy.2_Missense_Mutation_p.I156F	NM_145048	NP_659485	Q8N7B6	PACRL_HUMAN	PARK2 co-regulated-like isoform 1	236							binding				0						CCTTAGCATCATCAAATCTAA	0.378			NA											16	55					0	0	0.004007	0	0
ARAP2	116984	broad.mit.edu	37	4	36195269	36195269	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:36195269T>A	uc003gsq.1	-	7	1826	c.1488A>T	c.(1486-1488)GGA>GGT	p.G496G	ARAP2_uc003gsr.1_Silent_p.G496G	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	496	PH 1.				regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						ACATGCGTTTTCTGCAAAACA	0.259			NA											17	10					0	0	0.006122	0	0
ARAP2	116984	broad.mit.edu	37	4	36230838	36230838	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:36230838T>A	uc003gsq.1	-	2	609	c.271A>T	c.(271-273)AAG>TAG	p.K91*	ARAP2_uc003gsr.1_Nonsense_Mutation_p.K91*	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	91					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						TGGTAATCCTTTGAAGGGTCA	0.363			NA											14	42					0	0	0.00245	0	0
PTTG2	10744	broad.mit.edu	37	4	37962214	37962214	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:37962214A>G	uc011bye.1	+	1	159	c.159A>G	c.(157-159)CCA>CCG	p.P53P	TBC1D1_uc003gtb.2_Intron|TBC1D1_uc011byd.1_Intron|TBC1D1_uc010ifd.2_Intron	NM_006607	NP_006598	Q9NZH5	PTTG2_HUMAN	pituitary tumor-transforming 2	53					chromosome organization|DNA metabolic process	cytoplasm|nucleus	SH3 domain binding				0						ACGATGCTCCATCAGCCTTAC	0.433			NA											16	38					0	0	0.003163	0	0
N4BP2	55728	broad.mit.edu	37	4	40104284	40104284	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:40104284G>T	uc003guy.3	+	4	1157	c.819G>T	c.(817-819)GAG>GAT	p.E273D	N4BP2_uc010ifq.2_Missense_Mutation_p.E193D|N4BP2_uc010ifr.2_Missense_Mutation_p.E193D	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	273						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						TAGAATCTGAGTGCGTTGAGG	0.433			NA											21	36					2.37509e-13	3.95849e-13	0.010504	1	0
GABRG1	2565	broad.mit.edu	37	4	46067421	46067421	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:46067421G>A	uc003gxb.2	-	4	654	c.502C>T	c.(502-504)CTT>TTT	p.L168F		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	168	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		CAAATTCGAAGCAGACGATTA	0.333			NA											4	26					0	0	0.009096	0	0
GABRG1	2565	broad.mit.edu	37	4	46099325	46099325	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:46099325A>T	uc003gxb.2	-	2	298	c.146T>A	c.(145-147)GTG>GAG	p.V49E		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	49	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		GGTTTTGTTCACCGTTAAATC	0.348			NA											26	99					0	0	0.005443	0	0
GABRA4	2557	broad.mit.edu	37	4	46930604	46930604	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:46930604G>T	uc003gxg.2	-	9	1442	c.1303C>A	c.(1303-1305)CCA>ACA	p.P435T		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	435	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CGGCTGAATGGGTTTGGACTG	0.463	Ovarian(6;283 369 8234 12290 33402)		NA											21	65					2.27525e-19	4.17253e-19	0.003954	1	0
TXK	7294	broad.mit.edu	37	4	48069685	48069685	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:48069685C>A	uc003gxx.3	-	15	1639	c.1553G>T	c.(1552-1554)CGG>CTG	p.R518L	TXK_uc010igj.2_RNA|TXK_uc011bzj.1_Missense_Mutation_p.R205L	NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	518	Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						TGTGACAGCCCGCAGCAGCTC	0.443			NA											19	100					8.10497e-08	1.13217e-07	0.010504	1	0
LRRC66	339977	broad.mit.edu	37	4	52861910	52861910	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:52861910G>T	uc003gzi.2	-	4	1291	c.1278C>A	c.(1276-1278)TAC>TAA	p.Y426*		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	426						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CCATGTCATCGTAGAAGCCCT	0.537			NA											13	67					4.3838e-07	5.8727e-07	0.001855	1	0
PDGFRA	5156	broad.mit.edu	37	4	55151608	55151608	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:55151608C>A	uc003han.3	+	17	2725	c.2394C>A	c.(2392-2394)TTC>TTA	p.F798L	PDGFRA_uc003haa.2_Missense_Mutation_p.F558L	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	798	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	TGTTGAGCTTCACCTATCAAG	0.393	Pancreas(151;208 1913 7310 23853 37092)		NA	Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			15	26					1.15088e-07	1.58036e-07	0.004007	1	0
PDGFRA	5156	broad.mit.edu	37	4	55155249	55155249	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:55155249G>T	uc003han.3	+	21	3179	c.2848G>T	c.(2848-2850)GTG>TTG	p.V950L	PDGFRA_uc003haa.2_Missense_Mutation_p.V710L	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	950	Protein kinase.|Cytoplasmic (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity			soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	GAGTGAGATTGTGGAGAATCT	0.488	Pancreas(151;208 1913 7310 23853 37092)		NA	Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			10	28					3.86212e-05	4.67636e-05	0.008291	1	0
KIT	3815	broad.mit.edu	37	4	55561731	55561731	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:55561731C>T	uc010igr.2	+	2	208	c.121C>T	c.(121-123)CCA>TCA	p.P41S	KIT_uc010igs.2_Missense_Mutation_p.P41S	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	41	Extracellular (Potential).|Ig-like C2-type 1.				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	ATCCATCCATCCAGGAAAATC	0.483			1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				16	18					0	0	0.003163	0	0
KDR	3791	broad.mit.edu	37	4	55987331	55987331	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:55987331G>T	uc003has.2	-	2	396	c.94C>A	c.(94-96)CCC>ACC	p.P32T	KDR_uc003hat.1_Missense_Mutation_p.P32T|KDR_uc011bzx.1_Missense_Mutation_p.P32T	NM_002253	NP_002244	P35968	VGFR2_HUMAN	kinase insert domain receptor precursor	32	Extracellular (Potential).				angiogenesis|cell differentiation|interspecies interaction between organisms|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of focal adhesion assembly|positive regulation of positive chemotaxis|regulation of cell shape	integral to plasma membrane	ATP binding|growth factor binding|Hsp90 protein binding|integrin binding|receptor signaling protein tyrosine kinase activity|vascular endothelial growth factor receptor activity			lung(16)|soft_tissue(4)|central_nervous_system(4)|large_intestine(2)|stomach(2)|skin(2)|ovary(2)|kidney(1)	33	all_cancers(7;0.0255)|all_lung(4;0.00175)|Lung NSC(11;0.00384)|all_epithelial(27;0.034)|Glioma(25;0.08)|all_neural(26;0.101)		Epithelial(7;0.189)		Sorafenib(DB00398)|Sunitinib(DB01268)	CTGAGCCTGGGCAGATCAAGA	0.348			NA	Mis		NSCLC|angiosarcoma				Familial_Infantile_Hemangioma	TSP Lung(20;0.16)			3	39					0.00909568	0.00964006	0.009096	1	0
UGT2B4	7363	broad.mit.edu	37	4	70361312	70361312	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:70361312T>A	uc003hek.3	-	1	315	c.268A>T	c.(268-270)ATC>TTC	p.I90F	UGT2B4_uc011cap.1_Intron|UGT2B4_uc003hel.3_Missense_Mutation_p.I90F	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	90					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						AGCTGCTTGATAATATCCTCA	0.358			NA											3	17					0	0	0.004672	0	0
CSN2	1447	broad.mit.edu	37	4	70823204	70823204	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:70823204G>T	uc003hes.3	-	5	476	c.463C>A	c.(463-465)CAG>AAG	p.Q155K	CSN2_uc003het.3_Missense_Mutation_p.Q154K	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	155					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						GGAATAGGCTGAGGGACCTGC	0.537			NA											9	26					1.76689e-08	2.52626e-08	0.006214	1	0
CSN2	1447	broad.mit.edu	37	4	70825776	70825777	+	Missense_Mutation	DNP	TG	TG	CT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:70825776_70825777TG>CT	uc003hes.3	-	2	85_86	c.72_73CA>AG	c.(70-75)AGCAGT>AGAGGT	p.24_25SS>RG	CSN2_uc003het.3_Missense_Mutation_p.24_25SS>RG	NM_001891	NP_001882	P05814	CASB_HUMAN	casein beta precursor	24_25					calcium ion transport	extracellular region	calcium ion binding|enzyme inhibitor activity|transporter activity				0						CTTACCTCACTGCTTGAAAGGC	0.322			NA											4	13					0	0	0.004672	0	0
PROL1	58503	broad.mit.edu	37	4	71275244	71275244	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:71275244C>A	uc003hfi.2	+	3	373	c.199C>A	c.(199-201)CCA>ACA	p.P67T		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	67	Pro-rich.				regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TCCCTTTGTCCCAGGGCGAGT	0.488			NA											27	73					2.44723e-14	4.19384e-14	0.004656	1	0
NPFFR2	10886	broad.mit.edu	37	4	72994393	72994393	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:72994393G>A	uc003hgg.2	+	2	489	c.391G>A	c.(391-393)GAT>AAT	p.D131N	NPFFR2_uc010iig.1_Intron|NPFFR2_uc003hgi.2_Missense_Mutation_p.D32N|NPFFR2_uc003hgh.2_Missense_Mutation_p.D29N	NM_004885	NP_004876	Q9Y5X5	NPFF2_HUMAN	neuropeptide FF receptor 2 isoform 1	131	Extracellular (Potential).				detection of abiotic stimulus	actin cytoskeleton|integral to plasma membrane	neuropeptide receptor activity			ovary(2)|central_nervous_system(1)	3			Lung(101;0.0935)|LUSC - Lung squamous cell carcinoma(112;0.138)			TCTGTACTCAGATATTAATAT	0.373			NA											5	24					0	0	0.000602	0	0
AREG	374	broad.mit.edu	37	4	75311105	75311105	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:75311105C>G	uc011cbl.1	+	1	253	c.43C>G	c.(43-45)CTC>GTC	p.L15V		NM_001657	NP_001648	P15514	AREG_HUMAN	amphiregulin preproprotein	15					cell proliferation|cell-cell signaling|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|positive regulation of DNA replication	cell surface|extracellular space|integral to membrane	cytokine activity|growth factor activity				0			Lung(101;0.196)			GGTGCTGTCGCTCTTGATACT	0.622			NA											3	6					0	0	0.001168	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661953	77661953	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:77661953G>T	uc011cbx.1	+	5	3580	c.2627G>T	c.(2626-2628)CGT>CTT	p.R876L	SHROOM3_uc011cbz.1_Missense_Mutation_p.R700L|SHROOM3_uc003hkf.1_Missense_Mutation_p.R751L|SHROOM3_uc003hkg.2_Missense_Mutation_p.R654L	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	876					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GACAGCGGCCGTGGCCCCCAG	0.692			NA											3	20					0.004672	0.00503002	0.004672	1	0
BMP2K	55589	broad.mit.edu	37	4	79831904	79831904	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:79831904A>T	uc003hlk.2	+	16	2369	c.2203A>T	c.(2203-2205)AAG>TAG	p.K735*	PAQR3_uc003hlm.2_Intron|PAQR3_uc003hln.2_Intron|uc010ijm.1_5'Flank	NM_198892	NP_942595	Q9NSY1	BMP2K_HUMAN	BMP-2 inducible kinase isoform a	735						nucleus	ATP binding|protein serine/threonine kinase activity			lung(1)	1						TCAAGTGCAAAAGGGGAATGA	0.438			NA											7	34					0	0	0.00308	0	0
ENOPH1	58478	broad.mit.edu	37	4	83378077	83378077	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:83378077G>T	uc003hmv.2	+	5	789	c.532G>T	c.(532-534)GGT>TGT	p.G178C	ENOPH1_uc003hmw.2_Missense_Mutation_p.G90C|ENOPH1_uc003hmx.2_Missense_Mutation_p.G32C	NM_021204	NP_067027	Q9UHY7	ENOPH_HUMAN	enolase-phosphatase 1	178					L-methionine salvage from methylthioadenosine	cytoplasm|nucleus	2,3-diketo-5-methylthiopentyl-1-phosphate enolase activity|2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase activity|acireductone synthase activity|magnesium ion binding|phosphoglycolate phosphatase activity				0						GCTTGTTGATGGTCACTTTGA	0.408			NA											5	25					0.000602214	0.000676645	0.000602	1	0
DMP1	1758	broad.mit.edu	37	4	88584385	88584385	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:88584385G>A	uc003hqv.2	+	6	1559	c.1455G>A	c.(1453-1455)GAG>GAA	p.E485E	DMP1_uc003hqw.2_Silent_p.E469E	NM_004407	NP_004398	Q13316	DMP1_HUMAN	dentin matrix acidic phosphoprotein 1 isoform 1	485					biomineral tissue development|ossification	cytoplasm|nucleus|proteinaceous extracellular matrix	calcium ion binding|integrin binding			pancreas(1)|skin(1)	2		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.227)		OV - Ovarian serous cystadenocarcinoma(123;0.000516)		AAAACATTGAGATAGAGAGCC	0.463			NA											22	110					0	0	0.010504	0	0
Unknown	0	broad.mit.edu	37	4	88814755	88814755	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:88814755C>A	uc010iko.1	+	4	1382	c.1382C>A	c.(1381-1383)CCC>CAC	p.P461H						SubName: Full=Heat shock protein 90kDa alpha (Cytosolic), class B member 1, isoform CRA_a; SubName: Full=cDNA, FLJ92550, Homo sapiens heat shock 90kDa protein 1, beta (HSPCB), mRNA;												NA						GTGTCTTCACCCTGCTGCATT	0.468			NA											10	40					2.17888e-05	2.68607e-05	0.006214	1	0
MMRN1	22915	broad.mit.edu	37	4	90816678	90816678	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:90816678C>A	uc003hst.2	+	1	627	c.556C>A	c.(556-558)CGG>AGG	p.R186R	MMRN1_uc010iku.2_Silent_p.R152R	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	186	Cell attachment site (Potential).				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		ATACCTCAGCCGGGGTGACAG	0.333			NA											8	27					1.06961e-07	1.48315e-07	0.00308	1	0
MMRN1	22915	broad.mit.edu	37	4	90874223	90874223	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:90874223C>A	uc003hst.2	+	8	3412	c.3341C>A	c.(3340-3342)CCT>CAT	p.P1114H	MMRN1_uc010iku.2_Missense_Mutation_p.P417H|MMRN1_uc011cds.1_Missense_Mutation_p.P856H	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	1114	C1q.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		ATGACTATACCTGGTCCTATC	0.368			NA											12	45					2.27111e-07	3.08624e-07	0.001368	1	0
PDHA2	5161	broad.mit.edu	37	4	96762193	96762193	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:96762193A>T	uc003htr.3	+	1	955	c.892A>T	c.(892-894)AGT>TGT	p.S298C		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	298					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	TCCTGGAGTCAGTTATCGTAC	0.428			NA											24	33					0	0	0.003954	0	0
ADH1A	124	broad.mit.edu	37	4	100208112	100208112	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:100208112G>T	uc003hur.1	-	3	225	c.154C>A	c.(154-156)CAC>AAC	p.H52N	uc003hum.1_RNA|ADH1A_uc011ceg.1_Missense_Mutation_p.H52N|ADH1A_uc010ilf.1_5'Flank|ADH1A_uc010ilg.1_Missense_Mutation_p.H52N	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	52					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	CTAACCACGTGGTCATCTGTG	0.473			NA											29	63					2.65835e-16	4.68795e-16	0.007291	1	0
ADH1B	125	broad.mit.edu	37	4	100237443	100237443	+	Silent	SNP	C	C	A	rs146657145		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:100237443C>A	uc003hus.3	-	4	360	c.276G>T	c.(274-276)CCG>CCT	p.P92P	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Silent_p.P52P|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Silent_p.P52P	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	92					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GAGTAAAGAGCGGGATGACTT	0.373			NA											10	25					2.17888e-05	2.68607e-05	0.006214	1	0
NHEDC1	150159	broad.mit.edu	37	4	103866435	103866435	+	Missense_Mutation	SNP	C	C	A	rs4504256		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:103866435C>A	uc003hww.2	-	6	690	c.568G>T	c.(568-570)GGT>TGT	p.G190C	NHEDC1_uc003hwu.2_Missense_Mutation_p.G190C|NHEDC1_uc010ilm.2_Intron|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Intron	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	190	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		AGGCATGGACCTACAGCCAAT	0.388			NA											28	81					9.39395e-14	1.57803e-13	0.00632	1	0
SGMS2	166929	broad.mit.edu	37	4	108817003	108817003	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:108817003A>T	uc003hyl.3	+	3	849	c.294A>T	c.(292-294)ACA>ACT	p.T98T	uc003hym.1_Intron|SGMS2_uc003hyn.2_Silent_p.T98T|SGMS2_uc003hyo.2_Silent_p.T98T	NM_001136258	NP_001129730	Q8NHU3	SMS2_HUMAN	sphingomyelin synthase 2	98	Helical; (Potential).				sphingomyelin biosynthetic process	integral to Golgi membrane|integral to plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			lung(1)	1				OV - Ovarian serous cystadenocarcinoma(123;2.95e-05)	Choline(DB00122)	TCATGATCACAGTTGTACATG	0.448			NA											15	35					0	0	0.003163	0	0
EGF	1950	broad.mit.edu	37	4	110897316	110897316	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:110897316G>T	uc003hzy.3	+	13	2430	c.1978G>T	c.(1978-1980)GAT>TAT	p.D660Y	EGF_uc011cfu.1_Missense_Mutation_p.D618Y|EGF_uc011cfv.1_Missense_Mutation_p.D660Y	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	660	LDL-receptor class B 9.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GTACTGGTGCGATGCCAAGCA	0.483			NA											9	42					0.000274275	0.000314197	0.004482	1	0
C4orf32	132720	broad.mit.edu	37	4	113108033	113108033	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:113108033G>T	uc003iah.2	+	2	522	c.338G>T	c.(337-339)GGC>GTC	p.G113V	C4orf32_uc003iai.2_RNA	NM_152400	NP_689613	Q8N8J7	CD032_HUMAN	chromosome 4 open reading frame 32	113	Helical; (Potential).					integral to membrane					0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.00198)		TGGTTCCTTGGCCTGCAAGCC	0.393			NA											20	77					8.00594e-06	1.0089e-05	0.007413	1	0
ANK2	287	broad.mit.edu	37	4	113970948	113970948	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:113970948A>G	uc003ibe.3	+	1	164	c.64A>G	c.(64-66)AGG>GGG	p.R22G	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Missense_Mutation_p.R22G|ANK2_uc003ibc.2_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.R22G	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	22					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CAGTAGTCAGAGGAGAAAAAG	0.328			NA											5	13					0	0	0.000602	0	0
ANK2	287	broad.mit.edu	37	4	114275488	114275488	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:114275488C>A	uc003ibe.3	+	38	5814	c.5714C>A	c.(5713-5715)TCG>TAG	p.S1905*	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Nonsense_Mutation_p.S1920*	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	1872	Repeat-rich region.|Repeat A.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCACCTGTTTCGCCTTCAGGC	0.493			NA											16	26					1.3612e-06	1.79244e-06	0.003163	1	0
ANK2	287	broad.mit.edu	37	4	114276613	114276613	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:114276613C>A	uc003ibe.3	+	38	6939	c.6839C>A	c.(6838-6840)CCC>CAC	p.P2280H	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_5'Flank|ANK2_uc011cgb.1_Missense_Mutation_p.P2295H	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2247					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		AAAGAGCATCCCACGACCAAA	0.468			NA											11	33					0.000673444	0.00075369	0.008291	1	0
NDST4	64579	broad.mit.edu	37	4	115792057	115792057	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:115792057C>A	uc003ibu.2	-	7	2265	c.1586G>T	c.(1585-1587)GGG>GTG	p.G529V	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	529	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGTATATAACCCTAGGCGGTC	0.388			NA											8	30					5.4927e-09	8.0151e-09	0.004482	1	0
SYNPO2	171024	broad.mit.edu	37	4	119948138	119948138	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:119948138A>T	uc003icm.3	+	3	810	c.614A>T	c.(613-615)CAG>CTG	p.Q205L	SYNPO2_uc010ina.2_Missense_Mutation_p.Q205L|SYNPO2_uc010inb.2_Missense_Mutation_p.Q205L|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.Q133L	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	205						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						TCCCTTTCACAGGAGAGACAT	0.537			NA											9	21					0	0	0.004482	0	0
KIAA1109	84162	broad.mit.edu	37	4	123161088	123161088	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:123161088A>T	uc003ieh.2	+	27	4296	c.4251A>T	c.(4249-4251)AAA>AAT	p.K1417N	KIAA1109_uc003iei.1_Missense_Mutation_p.K1170N|KIAA1109_uc010ins.1_Missense_Mutation_p.K760N|KIAA1109_uc003iek.2_Missense_Mutation_p.K36N	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	1417	Poly-Lys.				regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CGGGTAGAAAAAAGAAGAAAA	0.453			NA											9	12					0	0	0.004482	0	0
KIAA1109	84162	broad.mit.edu	37	4	123237904	123237904	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:123237904A>T	uc003ieh.2	+	60	10602	c.10557A>T	c.(10555-10557)CGA>CGT	p.R3519R	KIAA1109_uc003iel.1_Silent_p.R1454R	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3519					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						CAGATTATCGAAGACAGGCAG	0.398			NA											20	39					0	0	0.002299	0	0
KIAA1109	84162	broad.mit.edu	37	4	123246455	123246455	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:123246455A>G	uc003ieh.2	+	63	11020	c.10975A>G	c.(10975-10977)ACT>GCT	p.T3659A	KIAA1109_uc003iel.1_Missense_Mutation_p.T1594A|KIAA1109_uc003iem.2_Missense_Mutation_p.T29A	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3659					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ACCTAGAGTAACTTTTAATAT	0.323			NA											11	36					0	0	0.010729	0	0
FAT4	79633	broad.mit.edu	37	4	126411837	126411837	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:126411837T>C	uc003ifj.3	+	17	13860	c.13860T>C	c.(13858-13860)TAT>TAC	p.Y4620Y	FAT4_uc011cgp.1_Silent_p.Y2861Y|FAT4_uc003ifi.1_Silent_p.Y2097Y	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4620	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TAGAGCACTATGACATTGACA	0.488			NA											12	49					0	0	0.001368	0	0
PCDH10	57575	broad.mit.edu	37	4	134072215	134072215	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:134072215C>A	uc003iha.2	+	1	1746	c.920C>A	c.(919-921)ACT>AAT	p.T307N	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.T307N	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	307	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		TCGCCGCGCACTGGCAGACTG	0.647			NA											8	48					1.58986e-06	2.08065e-06	0.008291	1	0
PCDH10	57575	broad.mit.edu	37	4	134073551	134073551	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:134073551G>A	uc003iha.2	+	1	3082	c.2256G>A	c.(2254-2256)CTG>CTA	p.L752L	PCDH10_uc003igz.2_Silent_p.L752L	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	752	Cys-rich.|Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		ATACTTGTCTGGCCAGCGATT	0.592			NA											11	34					0	0	0.010729	0	0
PABPC4L	132430	broad.mit.edu	37	4	135122082	135122082	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:135122082G>T	uc010ioe.2	-	2	350	c.93C>A	c.(91-93)AGC>AGA	p.S31R		NM_001114734	NP_001108206			poly(A) binding protein, cytoplasmic 4-like												0						GCCCCACAGTGCTGAACTTCC	0.572			NA											4	2					0.00909568	0.00964006	0.009096	1	0
TBC1D9	23158	broad.mit.edu	37	4	141598060	141598060	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:141598060G>T	uc010ioj.2	-	6	1319	c.1047C>A	c.(1045-1047)ATC>ATA	p.I349I		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	349	GRAM 2.					intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CACGGAGCGGGATAATGAGGC	0.358			NA											10	44					0.000442599	0.000502282	0.006214	1	0
SMARCA5	8467	broad.mit.edu	37	4	144442691	144442691	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:144442691A>T	uc003ijg.2	+	3	824	c.362A>T	c.(361-363)AAA>ATA	p.K121I		NM_003601	NP_003592	O60264	SMCA5_HUMAN	SWI/SNF-related matrix-associated	121					CenH3-containing nucleosome assembly at centromere|nucleosome positioning|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	condensed chromosome|nucleolus|nucleoplasm|NURF complex|RSF complex	ATP binding|ATPase activity|DNA binding|helicase activity|nucleosome binding|protein binding			skin(1)	1	all_hematologic(180;0.158)					TTGAAGATGAAACCAGGGCGC	0.383			NA											9	25					0	0	0.006214	0	0
GYPE	2996	broad.mit.edu	37	4	144797935	144797935	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:144797935G>T	uc003ijj.2	-	3	266	c.210C>A	c.(208-210)ATC>ATA	p.I70I	GYPE_uc010ion.2_Intron|GYPE_uc003ijk.3_Silent_p.I70I	NM_198682	NP_941391	P15421	GLPE_HUMAN	glycophorin E precursor	70	Helical; (Potential).					integral to plasma membrane					0	all_hematologic(180;0.158)					AAATTAAGATGATCATTCCAA	0.383			NA											3	18					0.004672	0.00503002	0.004672	1	0
GYPA	2993	broad.mit.edu	37	4	145039884	145039884	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:145039884T>A	uc003ijo.3	-	4	370	c.254A>T	c.(253-255)CAT>CTT	p.H85L	GYPA_uc003ijn.2_Missense_Mutation_p.H85L|GYPA_uc011cia.1_RNA|GYPA_uc011cib.1_Missense_Mutation_p.H52L|GYPA_uc003ijp.3_Missense_Mutation_p.H53L|GYPA_uc010ioq.2_Intron|GYPA_uc010ior.2_Missense_Mutation_p.H20L|GYPA_uc010ios.1_Intron	NM_002099	NP_002090	P02724	GLPA_HUMAN	glycophorin A precursor	85	Extracellular.				interspecies interaction between organisms	membrane fraction	receptor activity			central_nervous_system(2)	2	all_hematologic(180;0.15)					AGAGAAATGATGGGCAAGTTG	0.313			NA											11	48					0	0	0.001855	0	0
ZNF827	152485	broad.mit.edu	37	4	146806953	146806953	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:146806953C>A	uc003ikn.2	-	4	1672	c.1624G>T	c.(1624-1626)GAC>TAC	p.D542Y	ZNF827_uc003ikm.2_Missense_Mutation_p.D542Y|ZNF827_uc010iox.2_Missense_Mutation_p.D192Y	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	542					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					GCGGGCCTGTCGGCAGCATTC	0.572			NA											13	39					4.93089e-13	8.17806e-13	0.00245	1	0
FBXW7	55294	broad.mit.edu	37	4	153268138	153268138	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:153268138G>A	uc003ims.2	-	4	819	c.670C>T	c.(670-672)CGA>TGA	p.R224*	FBXW7_uc011cii.1_Nonsense_Mutation_p.R224*|FBXW7_uc003imt.2_Nonsense_Mutation_p.R224*|FBXW7_uc011cih.1_Nonsense_Mutation_p.R48*|FBXW7_uc003imq.2_Nonsense_Mutation_p.R144*|FBXW7_uc003imr.2_Nonsense_Mutation_p.R106*	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	224					interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding	p.R224*(3)		haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GATGTAATTCGGCGTCGTTGT	0.448			NA	Mis|N|D|F		colorectal|endometrial|T-ALL								17	64					0	0	0.006122	0	0
SFRP2	6423	broad.mit.edu	37	4	154707014	154707014	+	Splice_Site	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:154707014A>T	uc003inv.1	-	2	824	c.583_splice	c.e2+1	p.A195_splice		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor						brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				TGTATTACTTACCAAAATCAT	0.318			NA											3	15					0	0	0.004672	0	0
FGB	2244	broad.mit.edu	37	4	155487640	155487640	+	Splice_Site	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:155487640G>A	uc003ioa.3	+	3	346	c.307_splice	c.e3-1	p.G103_splice	FGB_uc010ipu.1_Splice_Site|FGB_uc003iob.3_Splice_Site_p.G100_splice|FGB_uc010ipv.2_Intron|FGB_uc010ipw.2_Splice_Site_p.G100_splice|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein						platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TTTGTTTTTAGGGGGTGTTGT	0.388	NSCLC(106;1133 1613 21870 46110 52656)		NA											6	39					0	0	0.001984	0	0
LRAT	9227	broad.mit.edu	37	4	155666013	155666013	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:155666013G>C	uc003iom.1	+	1	862	c.535G>C	c.(535-537)GAC>CAC	p.D179H	uc003iol.2_Intron|LRAT_uc003ion.1_Missense_Mutation_p.D179H	NM_004744	NP_004735	O95237	LRAT_HUMAN	lecithin retinol acyltransferase	179	Cytoplasmic (By similarity).				response to stimulus|retinoid metabolic process|steroid metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|multivesicular body|perinuclear region of cytoplasm|rough endoplasmic reticulum	phosphatidylcholine-retinol O-acyltransferase activity			central_nervous_system(1)	1	all_hematologic(180;0.215)	Renal(120;0.0458)			Vitamin A(DB00162)	TCCCCAGTCCGACAAGGTATG	0.577			NA											15	49					0	0	0.008871	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156651182	156651182	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:156651182A>T	uc003iov.2	+	11	2408	c.1872A>T	c.(1870-1872)AGA>AGT	p.R624S	GUCY1A3_uc003iow.2_Missense_Mutation_p.R624S|GUCY1A3_uc010iqd.2_Missense_Mutation_p.R623S|GUCY1A3_uc003iox.2_Missense_Mutation_p.R624S|GUCY1A3_uc003ioz.2_Missense_Mutation_p.R389S|GUCY1A3_uc003ioy.2_Missense_Mutation_p.R624S|GUCY1A3_uc010iqe.2_Missense_Mutation_p.R389S|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.R624S	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	624					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		ATATTTTCAGATTACTCAAAG	0.363			NA											3	26					0	0	0.004672	0	0
GLRB	2743	broad.mit.edu	37	4	158091864	158091864	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:158091864G>A	uc003ipj.2	+	10	1680	c.1478G>A	c.(1477-1479)TGG>TAG	p.W493*		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	493	Helical; (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	GTTATATATTGGTCTATATAT	0.338			NA											3	32					0	0	0.004672	0	0
RAPGEF2	9693	broad.mit.edu	37	4	160253760	160253760	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:160253760A>T	uc003iqg.3	+	11	1873	c.1563A>T	c.(1561-1563)AAA>AAT	p.K521N		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	521					cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		TGAACAAAAAAAGTAAAGCCA	0.408			NA											5	27					0	0	0.000602	0	0
FSTL5	56884	broad.mit.edu	37	4	162307033	162307033	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:162307033C>A	uc003iqh.2	-	16	2846	c.2410G>T	c.(2410-2412)GGC>TGC	p.G804C	FSTL5_uc003iqi.2_Missense_Mutation_p.G803C|FSTL5_uc010iqv.2_Missense_Mutation_p.G794C|uc010iqu.1_RNA	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	804						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CCAAACAAGCCACTGTCCTGG	0.443			NA											14	72					9.31168e-06	1.16912e-05	0.001855	1	0
MARCH1	55016	broad.mit.edu	37	4	164534510	164534510	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:164534510G>T	uc003iqs.1	-	5	1175	c.198C>A	c.(196-198)AGC>AGA	p.S66R	MARCH1_uc003iqr.1_Missense_Mutation_p.S49R	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	66	Responsible for low stability (By similarity).				antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				ACCTTGACTGGCTCCTGGGAG	0.413			NA											7	69					2.7689e-08	3.94231e-08	0.001984	1	0
CPE	1363	broad.mit.edu	37	4	166405746	166405746	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:166405746C>A	uc003irg.3	+	5	1240	c.963C>A	c.(961-963)AGC>AGA	p.S321R		NM_001873	NP_001864	P16870	CBPE_HUMAN	carboxypeptidase E preproprotein	321					cardiac left ventricle morphogenesis|neuropeptide signaling pathway|protein modification process	extracellular region|nucleus|plasma membrane	metallocarboxypeptidase activity|protein binding|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0962)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.137)	Glucagon recombinant(DB00040)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CTTGGTACAGCGTACCTGGAG	0.453			NA											47	159					5.34276e-22	9.92643e-22	0.00361	1	0
TLL1	7092	broad.mit.edu	37	4	166929094	166929094	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:166929094G>T	uc003irh.1	+	7	1459	c.812_splice	c.e7-1	p.G271_splice	TLL1_uc011cjn.1_Splice_Site_p.G271_splice|TLL1_uc011cjo.1_Splice_Site_p.G95_splice	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor						cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTGGTTCTTAGGTCAAGAGTA	0.403			NA											12	35					5.50884e-06	6.94735e-06	0.001368	1	0
PALLD	23022	broad.mit.edu	37	4	169846183	169846183	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:169846183G>C	uc011cjx.1	+	20	3523	c.3312G>C	c.(3310-3312)AAG>AAC	p.K1104N	CBR4_uc011cjy.1_Intron|PALLD_uc003iru.2_Missense_Mutation_p.K1087N|PALLD_uc003irv.2_Missense_Mutation_p.K705N|PALLD_uc003irw.2_Missense_Mutation_p.K589N|PALLD_uc003irx.2_Missense_Mutation_p.K313N	NM_016081	NP_057165	Q8WX93	PALLD_HUMAN	palladin isoform 2	1311	Ig-like C2-type 5.|Interaction with EZR.				cytoskeleton organization	actin filament|focal adhesion|lamellipodium|nucleus|ruffle|sarcomere	actin binding|muscle alpha-actinin binding			ovary(1)	1		Prostate(90;0.00996)|Renal(120;0.0203)|Melanoma(52;0.144)		GBM - Glioblastoma multiforme(119;0.204)		TGTCAGCCAAGAATGAAGCAG	0.463	Esophageal Squamous(109;1482 1532 18347 40239 51172)		NA							Pancreatic_Cancer_Familial_Clustering_of				8	39					0	0	0.004482	0	0
CLCN3	1182	broad.mit.edu	37	4	170613336	170613336	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:170613336C>G	uc003isi.2	+	7	1310	c.801C>G	c.(799-801)ATC>ATG	p.I267M	CLCN3_uc003ish.2_Missense_Mutation_p.I267M|CLCN3_uc011cjz.1_Missense_Mutation_p.I250M|CLCN3_uc011cka.1_Missense_Mutation_p.I267M|CLCN3_uc003isj.1_Missense_Mutation_p.I240M	NM_001829	NP_001820	P51790	CLCN3_HUMAN	chloride channel 3 isoform b	267	Helical; (By similarity).				endosomal lumen acidification	cell surface|early endosome membrane|Golgi membrane|integral to membrane|late endosome membrane|transport vesicle membrane	antiporter activity|ATP binding|PDZ domain binding|protein heterodimerization activity|protein homodimerization activity|voltage-gated chloride channel activity			breast(2)|ovary(1)	3		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0233)|LUSC - Lung squamous cell carcinoma(193;0.131)		TTAAAACCATCACATTAGTCC	0.388			NA											19	114					0	0	0.007413	0	0
ASB5	140458	broad.mit.edu	37	4	177143474	177143474	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:177143474G>T	uc003iuq.1	-	3	390	c.374C>A	c.(373-375)GCA>GAA	p.A125E	ASB5_uc003iup.1_Missense_Mutation_p.A72E	NM_080874	NP_543150	Q8WWX0	ASB5_HUMAN	ankyrin repeat and SOCS box-containing protein	125	ANK 2.				intracellular signal transduction					skin(2)	2		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.13e-20)|Epithelial(43;9.94e-18)|OV - Ovarian serous cystadenocarcinoma(60;2e-09)|GBM - Glioblastoma multiforme(59;0.000254)|STAD - Stomach adenocarcinoma(60;0.000653)|LUSC - Lung squamous cell carcinoma(193;0.0393)		ATTAGCTCCTGCTTCCAGCAG	0.418			NA											20	36					5.35267e-07	7.15935e-07	0.007413	1	0
VEGFC	7424	broad.mit.edu	37	4	177608561	177608561	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:177608561C>T	uc003ius.1	-	6	1355	c.925G>A	c.(925-927)GAA>AAA	p.E309K		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	309	4 X 16 AA repeats of C-X(10)-C-X-C- X(1,3)-C.|2.				angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		CTGTCTAGTTCTTTGTGGGGT	0.507			NA											39	49					0	0	0.00623	0	0
C4orf41	60684	broad.mit.edu	37	4	184612552	184612552	+	Silent	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:184612552A>C	uc003ivx.2	+	19	2153	c.1977A>C	c.(1975-1977)CTA>CTC	p.L659L	C4orf41_uc003ivw.2_Silent_p.L659L|C4orf41_uc010isc.2_Silent_p.L3L|C4orf41_uc003ivy.2_Silent_p.L265L	NM_021942	NP_068761	Q7Z392	CD041_HUMAN	hypothetical protein LOC60684 isoform a	659											0		all_lung(41;4.4e-14)|Lung NSC(41;1.03e-13)|Colorectal(36;0.00139)|all_hematologic(60;0.00756)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.202)		all cancers(43;1.39e-26)|Epithelial(43;2.42e-22)|OV - Ovarian serous cystadenocarcinoma(60;6.85e-10)|GBM - Glioblastoma multiforme(59;6.71e-06)|Colorectal(24;9.67e-06)|STAD - Stomach adenocarcinoma(60;2.36e-05)|COAD - Colon adenocarcinoma(29;7.07e-05)|LUSC - Lung squamous cell carcinoma(40;0.00984)|READ - Rectum adenocarcinoma(43;0.171)		AGATGTGCCTAGTTCCTGGCA	0.323			NA											7	26					0	0	0.001984	0	0
FAM149A	25854	broad.mit.edu	37	4	187086567	187086567	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:187086567C>G	uc003iyt.3	+	11	1692	c.1113C>G	c.(1111-1113)GTC>GTG	p.V371V	FAM149A_uc011cla.1_Silent_p.V371V|FAM149A_uc003iyu.3_Silent_p.V371V|FAM149A_uc010isl.2_Silent_p.V371V|FAM149A_uc011clb.1_Silent_p.V371V	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	662										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		CCCCGCTAGTCACGGAGACCA	0.532			NA											9	40					0	0	0.008291	0	0
KLKB1	3818	broad.mit.edu	37	4	187172752	187172752	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:187172752G>A	uc003iyy.2	+	9	1051	c.980G>A	c.(979-981)CGC>CAC	p.R327H	KLKB1_uc011clc.1_Missense_Mutation_p.R125H|KLKB1_uc011cld.1_Missense_Mutation_p.R289H	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	327	Apple 4.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		AAGATGATTCGCTGTCAGTTT	0.353			NA											7	41					0	0	0.00308	0	0
FAT1	2195	broad.mit.edu	37	4	187517714	187517714	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:187517714C>A	uc003izf.2	-	25	13168	c.12980G>T	c.(12979-12981)AGC>ATC	p.S4327I	FAT1_uc010isn.2_5'Flank|FAT1_uc003ize.2_Missense_Mutation_p.S218I	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	4327	Cytoplasmic (Potential).				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AAAGTCCCAGCTAGGCTTCTG	0.512	Colon(197;1040 2055 4143 4984 49344)		NA								HNSCC(5;0.00058)			15	28					4.7546e-09	6.98602e-09	0.004007	1	0
FAT1	2195	broad.mit.edu	37	4	187627857	187627857	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:187627857G>A	uc003izf.2	-	2	3313	c.3125C>T	c.(3124-3126)ACA>ATA	p.T1042I	FAT1_uc010iso.1_Missense_Mutation_p.T1042I	NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1042	Extracellular (Potential).|Cadherin 9.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						TTCTTTCACTGTCCCCTTTTC	0.478	Colon(197;1040 2055 4143 4984 49344)		NA								HNSCC(5;0.00058)			14	78					0	0	0.00245	0	0
TRIML1	339976	broad.mit.edu	37	4	189067976	189067976	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:189067976C>T	uc003izm.1	+	6	972	c.857C>T	c.(856-858)ACG>ATG	p.T286M	TRIML1_uc003izn.1_Missense_Mutation_p.T10M	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	286	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		CCTCTTGCAGCGGAGATAACG	0.468	Melanoma(31;213 1036 16579 23968 32372)		NA											36	117					0	0	0.005524	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190903699	190903699	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr4:190903699C>A	uc011clg.1	-	4	1284	c.1281G>T	c.(1279-1281)ACG>ACT	p.T427T		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	428					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		CTCCCTCGGCCGTGGCATCCT	0.532			NA											65	90					2.15133e-10	3.29483e-10	0.00361	1	0
ADAMTS16	170690	broad.mit.edu	37	5	5303493	5303493	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:5303493A>G	uc003jdl.2	+	19	3040	c.2902A>G	c.(2902-2904)AGC>GGC	p.S968G	ADAMTS16_uc003jdk.1_Missense_Mutation_p.S968G	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	968	TSP type-1 3.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						AGTCCCGGCCAGCCTGTGCCC	0.697			NA											10	31					0	0	0.006214	0	0
KIAA0947	23379	broad.mit.edu	37	5	5461238	5461238	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:5461238A>G	uc003jdm.3	+	13	2013	c.1791A>G	c.(1789-1791)GAA>GAG	p.E597E		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	597										ovary(1)|central_nervous_system(1)	2						AGGAAAAAGAAGATACTCAAG	0.398			NA											19	227					0	0	0.008871	0	0
ADCY2	108	broad.mit.edu	37	5	7414860	7414860	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:7414860G>T	uc003jdz.1	+	2	452	c.385G>T	c.(385-387)GGC>TGC	p.G129C		NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	129					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						GTGTTTTGGAGGCACCGTCTC	0.443			NA											46	79					1.61572e-30	3.10365e-30	0.010771	1	0
ADCY2	108	broad.mit.edu	37	5	7784551	7784551	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:7784551C>T	uc003jdz.1	+	19	2525	c.2458C>T	c.(2458-2460)CTG>TTG	p.L820L	ADCY2_uc011cmo.1_Silent_p.L640L|ADCY2_uc010itm.1_Silent_p.L16L	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	820	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						ACTGCTTGTTCTGGGTAGACA	0.373			NA											10	109					0	0	0.008291	0	0
ADCY2	108	broad.mit.edu	37	5	7789875	7789875	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:7789875G>A	uc003jdz.1	+	20	2657	c.2590G>A	c.(2590-2592)GTG>ATG	p.V864M	ADCY2_uc011cmo.1_Missense_Mutation_p.V684M|ADCY2_uc010itm.1_Missense_Mutation_p.V60M	NM_020546	NP_065433	Q08462	ADCY2_HUMAN	adenylate cyclase 2	864	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	cytoplasm|dendrite|integral to membrane|plasma membrane	ATP binding|metal ion binding			ovary(5)|pancreas(1)|skin(1)	7						TCCCGCGCACGTGGCTGAGCA	0.587			NA											20	99					0	0	0.007413	0	0
SEMA5A	9037	broad.mit.edu	37	5	9066568	9066568	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:9066568C>A	uc003jek.2	-	17	2976	c.2264G>T	c.(2263-2265)TGT>TTT	p.C755F		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	755	TSP type-1 4.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GTCGCTAGAACAGTACCGCAT	0.537			NA											44	293					7.88023e-25	1.49513e-24	0.00361	1	0
SEMA5A	9037	broad.mit.edu	37	5	9136667	9136667	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:9136667C>T	uc003jek.2	-	13	2260	c.1548G>A	c.(1546-1548)CTG>CTA	p.L516L		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	516	Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						GGCTCTCCTCCAGGCTTGTGC	0.552			NA											23	111					0	0	0.002299	0	0
DNAH5	1767	broad.mit.edu	37	5	13752338	13752338	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:13752338T>C	uc003jfd.2	-	64	10975	c.10933A>G	c.(10933-10935)AGG>GGG	p.R3645G	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3645	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGCAAAGGCCTTCCAAGAGAA	0.408			NA							Kartagener_syndrome				14	143					0	0	0.004007	0	0
FAM105A	54491	broad.mit.edu	37	5	14610259	14610259	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:14610259T>C	uc003jfj.2	+	8	1020	c.907T>C	c.(907-909)TTT>CTT	p.F303L		NM_019018	NP_061891	Q9NUU6	F105A_HUMAN	hypothetical protein LOC54491	303										ovary(1)	1	Lung NSC(4;0.00592)					GATTGATATGTTTATACTTGG	0.448			NA											21	112					0	0	0.00278	0	0
FBXL7	23194	broad.mit.edu	37	5	15928016	15928016	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:15928016C>T	uc003jfn.1	+	3	626	c.145C>T	c.(145-147)CGC>TGC	p.R49C		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	49					ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						CCTGAGCATGCGCACACTGAG	0.567			NA											19	184					0	0	0.012319	0	0
FBXL7	23194	broad.mit.edu	37	5	15928503	15928503	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:15928503G>T	uc003jfn.1	+	3	1113	c.632G>T	c.(631-633)TGC>TTC	p.C211F		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	211	LRR 2.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCCCAGTGCTGCCCCGAACTG	0.582			NA											9	86					5.4927e-09	8.0151e-09	0.004482	1	0
MARCH11	441061	broad.mit.edu	37	5	16177928	16177928	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:16177928C>T	uc003jfo.2	-	2	813	c.600G>A	c.(598-600)CTG>CTA	p.L200L	uc003jfp.2_5'Flank	NM_001102562	NP_001096032	A6NNE9	MARHB_HUMAN	membrane-associated ring finger (C3HC4) 11	200	RING-CH-type.					cytoplasmic vesicle membrane|integral to membrane	ligase activity|zinc ion binding				0						TCCATTTTAGCAGGCACAGCT	0.438			NA											31	78					0	0	0.002836	0	0
BASP1	10409	broad.mit.edu	37	5	17275863	17275863	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:17275863G>T	uc003jfx.2	+	2	717	c.538G>T	c.(538-540)GCC>TCC	p.A180S		NM_006317	NP_006308	P80723	BASP1_HUMAN	brain abundant, membrane attached signal protein	180					glomerular visceral epithelial cell differentiation|negative regulation of transcription, DNA-dependent	cytoplasm|cytoskeleton|growth cone|nuclear speck|plasma membrane	protein domain specific binding|transcription corepressor activity|transcription regulatory region DNA binding				0						CTCGGAGGCTGCCCCCTCTTC	0.667			NA											6	53					5.9392e-07	7.92515e-07	0.001168	1	0
CDH18	1016	broad.mit.edu	37	5	19612661	19612661	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:19612661A>T	uc003jgc.2	-	5	1070	c.693T>A	c.(691-693)CAT>CAA	p.H231Q	CDH18_uc003jgd.2_Missense_Mutation_p.H231Q|CDH18_uc011cnm.1_Missense_Mutation_p.H231Q	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	231	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CTACGGAGTAATGTTCTCTGG	0.393			NA											11	81					0	0	0.001368	0	0
CDH12	1010	broad.mit.edu	37	5	21765189	21765189	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:21765189G>T	uc010iuc.2	-	9	1871	c.1413C>A	c.(1411-1413)AGC>AGA	p.S471R	CDH12_uc011cno.1_Missense_Mutation_p.S431R|CDH12_uc003jgk.2_Missense_Mutation_p.S471R|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	471	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TATTGACTTTGCTGGTCAATA	0.328			NA								HNSCC(59;0.17)			19	39					6.49762e-13	1.07138e-12	0.006122	1	0
CDH10	1008	broad.mit.edu	37	5	24498512	24498512	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:24498512C>A	uc003jgr.1	-	9	1842	c.1510G>T	c.(1510-1512)GGG>TGG	p.G504W	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	504	Cadherin 5.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CTTACCTGCCCTGGTCTGGCA	0.388			NA								HNSCC(23;0.051)			34	24					8.73648e-17	1.54548e-16	0.004289	1	0
CDH10	1008	broad.mit.edu	37	5	24535843	24535843	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:24535843C>G	uc003jgr.1	-	4	947	c.615G>C	c.(613-615)GGG>GGC	p.G205G	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	205	Cadherin 2.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AATAGGGCTGCCCTTGAAGTA	0.443			NA								HNSCC(23;0.051)			14	64					0	0	0.00245	0	0
CDH10	1008	broad.mit.edu	37	5	24537582	24537582	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:24537582C>A	uc003jgr.1	-	3	765	c.433G>T	c.(433-435)GAG>TAG	p.E145*	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	145	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		ATCACAAACTCTGACTCTGGC	0.423			NA								HNSCC(23;0.051)			24	181					7.92952e-12	1.26337e-11	0.003954	1	0
CDH9	1007	broad.mit.edu	37	5	26881700	26881700	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:26881700G>T	uc003jgs.1	-	12	2084	c.1915C>A	c.(1915-1917)CAA>AAA	p.Q639K	CDH9_uc011cnv.1_Missense_Mutation_p.Q232K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	639	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTTTTCTTTGCCTCTTCAAT	0.393	Melanoma(8;187 585 15745 40864 52829)		NA											32	40					2.61193e-14	4.46709e-14	0.009535	1	0
MTMR12	54545	broad.mit.edu	37	5	32229899	32229899	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:32229899G>A	uc003jhq.2	-	16	2399	c.2229C>T	c.(2227-2229)GAC>GAT	p.D743D	MTMR12_uc010iuk.2_Silent_p.D689D|MTMR12_uc010iul.2_Silent_p.D633D	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	743						cytoplasm	phosphatase activity			ovary(1)	1						CATCCCCTAGGTCCACGAACT	0.507			NA											18	87					0	0	0.006122	0	0
MTMR12	54545	broad.mit.edu	37	5	32243643	32243643	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:32243643A>T	uc003jhq.2	-	11	1254	c.1084T>A	c.(1084-1086)TGG>AGG	p.W362R	MTMR12_uc010iuk.2_Missense_Mutation_p.W362R|MTMR12_uc010iul.2_Missense_Mutation_p.W362R	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	362	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						ATGTCAAGCCAGCTGCTACTT	0.333			NA											13	64					0	0	0.001368	0	0
MTMR12	54545	broad.mit.edu	37	5	32263282	32263282	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:32263282C>A	uc003jhq.2	-	7	820	c.650G>T	c.(649-651)CGG>CTG	p.R217L	MTMR12_uc010iuk.2_Missense_Mutation_p.R217L|MTMR12_uc010iul.2_Missense_Mutation_p.R217L	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	217	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						GCCTTTGGTCCGTTCCAGTTC	0.383			NA											25	157					2.79863e-10	4.27848e-10	0.004656	1	0
MTMR12	54545	broad.mit.edu	37	5	32263287	32263287	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:32263287C>A	uc003jhq.2	-	7	815	c.645G>T	c.(643-645)CTG>CTT	p.L215L	MTMR12_uc010iuk.2_Silent_p.L215L|MTMR12_uc010iul.2_Silent_p.L215L	NM_001040446	NP_001035536	Q9C0I1	MTMRC_HUMAN	myotubularin related protein 12	215	Myotubularin phosphatase.					cytoplasm	phosphatase activity			ovary(1)	1						TGGTCCGTTCCAGTTCCCAAC	0.393			NA											26	153					2.12542e-12	3.4709e-12	0.00632	1	0
NPR3	4883	broad.mit.edu	37	5	32739067	32739067	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:32739067T>A	uc003jhv.2	+	3	1208	c.990T>A	c.(988-990)CCT>CCA	p.P330P	NPR3_uc010iuo.2_Silent_p.P114P|NPR3_uc011cnz.1_Silent_p.P114P|NPR3_uc003jhu.2_Silent_p.P330P	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	330	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	CAGTGAAACCTGAGTTTGAGA	0.448			NA											19	119					0	0	0.006122	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33616005	33616005	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:33616005A>T	uc003jia.1	-	15	2479	c.2316T>A	c.(2314-2316)TTT>TTA	p.F772L	ADAMTS12_uc010iuq.1_Missense_Mutation_p.F687L	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	772	Spacer 1.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						TGTCATACTGAAAGACAGTCC	0.478			NA								HNSCC(64;0.19)			11	125					0	0	0.008291	0	0
C1QTNF3	114899	broad.mit.edu	37	5	34035752	34035752	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:34035752C>A	uc003jin.2	-	2	283	c.196G>T	c.(196-198)GGA>TGA	p.G66*	C1QTNF3_uc003jio.2_Nonsense_Mutation_p.G139*	NM_030945	NP_112207	Q9BXJ4	C1QT3_HUMAN	C1q and tumor necrosis factor related protein 3	66	Collagen-like.					collagen					0	all_lung(31;0.0207)					TCATCCTTACCTGGAATGCCA	0.522			NA											35	28					8.73648e-17	1.54548e-16	0.004289	1	0
SPEF2	79925	broad.mit.edu	37	5	35753794	35753794	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:35753794C>A	uc003jjo.2	+	24	3510	c.3399C>A	c.(3397-3399)GAC>GAA	p.D1133E	SPEF2_uc003jjp.1_Missense_Mutation_p.D619E	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1133					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGCGGCTTGACATCATTAATG	0.507			NA											34	214					4.4194e-11	6.92441e-11	0.002836	1	0
UGT3A1	133688	broad.mit.edu	37	5	35957310	35957310	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:35957310A>C	uc003jjv.1	-	5	1212	c.1055T>G	c.(1054-1056)CTT>CGT	p.L352R	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.L352R|UGT3A1_uc011cor.1_Missense_Mutation_p.L318R	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	352	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACTCTGAGGAAGCCAGTCCAC	0.512			NA											4	65					0	0	0.000602	0	0
NIPBL	25836	broad.mit.edu	37	5	36962328	36962328	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:36962328C>T	uc003jkl.3	+	6	1061	c.562C>T	c.(562-564)CCA>TCA	p.P188S	NIPBL_uc003jkk.3_Missense_Mutation_p.P188S|NIPBL_uc003jkm.1_Missense_Mutation_p.P67S	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	188					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGGATACATGCCATATTCCCA	0.453			NA											40	283					0	0	0.009718	0	0
NIPBL	25836	broad.mit.edu	37	5	37006617	37006617	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:37006617G>C	uc003jkl.3	+	17	4513	c.4014G>C	c.(4012-4014)CAG>CAC	p.Q1338H	NIPBL_uc003jkk.3_Missense_Mutation_p.Q1338H	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1338					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			GAGTTATACAGTACACTAAAT	0.338			NA											3	36					0	0	0.004672	0	0
OSMR	9180	broad.mit.edu	37	5	38933124	38933124	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:38933124C>G	uc003jln.1	+	18	2885	c.2518C>G	c.(2518-2520)CTC>GTC	p.L840V	OSMR_uc011cpj.1_Missense_Mutation_p.L44V	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	840	Cytoplasmic (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CTACCTTTATCTCCTTCCAAC	0.468			NA											115	116					0	0	0.00361	0	0
DAB2	1601	broad.mit.edu	37	5	39376927	39376927	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:39376927C>A	uc003jlx.2	-	12	2493	c.1962G>T	c.(1960-1962)ATG>ATT	p.M654I	DAB2_uc003jlw.2_Missense_Mutation_p.M633I	NM_001343	NP_001334	P98082	DAB2_HUMAN	disabled homolog 2	654	Required for interaction with MYO6 (By similarity).				cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of protein binding|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway, planar cell polarity pathway	clathrin coated vesicle membrane|coated pit	protein C-terminus binding			kidney(2)|skin(1)	3	all_lung(31;0.000197)		Epithelial(62;0.137)			AATCCTTAAACATTTCTTTCA	0.527			NA									OREG0016586	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	81					4.36969e-10	6.60896e-10	0.001855	1	0
PLCXD3	345557	broad.mit.edu	37	5	41381964	41381964	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:41381964C>T	uc003jmm.1	-	2	878	c.776G>A	c.(775-777)GGG>GAG	p.G259E		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	259					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						ACTTGCCACCCCTTTGACCAC	0.353			NA											13	122					0	0	0.001368	0	0
PAIP1	10605	broad.mit.edu	37	5	43548014	43548014	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:43548014T>G	uc003job.2	-	3	684	c.437A>C	c.(436-438)GAA>GCA	p.E146A	PAIP1_uc003joa.2_Missense_Mutation_p.E67A|PAIP1_uc010ivp.2_Missense_Mutation_p.E67A|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.E34A	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	146					mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					CTCATAGGATTCCTACGGATC	0.363			NA											6	33					0	0	0.001168	0	0
HCN1	348980	broad.mit.edu	37	5	45262699	45262699	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:45262699G>C	uc003jok.2	-	8	2022	c.1997C>G	c.(1996-1998)CCG>CGG	p.P666R		NM_021072	NP_066550	O60741	HCN1_HUMAN	hyperpolarization activated cyclic	666	Cytoplasmic (Potential).					integral to membrane	cAMP binding|sodium channel activity|voltage-gated potassium channel activity			ovary(1)	1						TGTGTACACCGGTGGAGATTG	0.577			NA											9	91					0	0	0.006214	0	0
GPBP1	65056	broad.mit.edu	37	5	56542933	56542933	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:56542933A>G	uc003jrh.3	+	8	1969	c.695A>G	c.(694-696)AAT>AGT	p.N232S	GPBP1_uc010iwg.2_Missense_Mutation_p.N252S|GPBP1_uc003jri.3_Missense_Mutation_p.N61S|GPBP1_uc003jrj.3_Missense_Mutation_p.N239S|GPBP1_uc003jrk.3_Missense_Mutation_p.N239S|GPBP1_uc003jrl.3_RNA	NM_022913	NP_075064	Q86WP2	GPBP1_HUMAN	GC-rich promoter binding protein 1 isoform 1	232					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			large_intestine(1)|central_nervous_system(1)	2		Lung NSC(810;0.000861)|Prostate(74;0.0305)|Breast(144;0.222)		OV - Ovarian serous cystadenocarcinoma(10;7.64e-39)		ACAAAAGAAAATAAAGTTGGA	0.348			NA											9	30					0	0	0.001368	0	0
BDP1	55814	broad.mit.edu	37	5	70785389	70785389	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:70785389G>T	uc003kbp.1	+	10	1635	c.1372G>T	c.(1372-1374)GAC>TAC	p.D458Y	BDP1_uc003kbn.1_Missense_Mutation_p.D458Y|BDP1_uc003kbo.2_Missense_Mutation_p.D458Y	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	458	Required for phosphorylation by CSNK2A1.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		ATTAGAAGTAGACCTAAATCA	0.428			NA											11	17					1.08611e-07	1.49384e-07	0.010729	1	0
UTP15	84135	broad.mit.edu	37	5	72875896	72875896	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:72875896G>T	uc003kcw.1	+	13	1757	c.1534G>T	c.(1534-1536)GAG>TAG	p.E512*	UTP15_uc011cso.1_Nonsense_Mutation_p.E493*|UTP15_uc011csp.1_Nonsense_Mutation_p.E322*|UTP15_uc010ize.1_Nonsense_Mutation_p.E512*	NM_032175	NP_115551	Q8TED0	UTP15_HUMAN	UTP15, U3 small nucleolar ribonucleoprotein,	512					rRNA processing	cytoplasm|nucleolus					0		Lung NSC(167;0.00405)|Ovarian(174;0.0129)		OV - Ovarian serous cystadenocarcinoma(47;7.76e-55)		TGGATTTCCAGAGAATAAGAA	0.383			NA											4	45					3.59834e-05	4.39136e-05	0.001168	1	0
SERINC5	256987	broad.mit.edu	37	5	79498704	79498704	+	Splice_Site	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:79498704C>A	uc003kgj.2	-	2	324	c.195_splice	c.e2+1	p.H65_splice	SERINC5_uc003kgk.2_Splice_Site_p.H65_splice|SERINC5_uc003kgl.2_Splice_Site|SERINC5_uc003kgm.2_Splice_Site_p.H65_splice|SERINC5_uc011ctj.1_Splice_Site_p.H65_splice	NM_178276	NP_840060	Q86VE9	SERC5_HUMAN	developmentally regulated protein TPO1						phosphatidylserine metabolic process|phospholipid biosynthetic process|positive regulation of transferase activity	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		Lung NSC(167;0.00328)|all_lung(232;0.00356)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;2.93e-46)|Epithelial(54;5.59e-40)|all cancers(79;1.89e-34)		GACAAACTTACGTGCTCTTTC	0.493			NA											4	12					0.00909568	0.00964006	0.009096	1	0
VCAN	1462	broad.mit.edu	37	5	82841407	82841407	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:82841407C>A	uc003kii.3	+	9	9673	c.9317C>A	c.(9316-9318)CCT>CAT	p.P3106H	VCAN_uc003kij.3_Missense_Mutation_p.P2119H|VCAN_uc010jau.2_Missense_Mutation_p.P1352H|VCAN_uc003kik.3_Missense_Mutation_p.P365H|VCAN_uc003kil.3_Missense_Mutation_p.P1770H	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3106	EGF-like 1.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		ACCTGTTATCCTACTGAAACT	0.468			NA											32	91					1.80694e-10	2.7774e-10	0.009535	1	0
VCAN	1462	broad.mit.edu	37	5	82841424	82841424	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:82841424G>T	uc003kii.3	+	9	9690	c.9334G>T	c.(9334-9336)GTA>TTA	p.V3112L	VCAN_uc003kij.3_Missense_Mutation_p.V2125L|VCAN_uc010jau.2_Missense_Mutation_p.V1358L|VCAN_uc003kik.3_Missense_Mutation_p.V371L|VCAN_uc003kil.3_Missense_Mutation_p.V1776L	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	3112	EGF-like 1.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AACTTCCTACGTATGCACCTG	0.463			NA											33	77					6.70999e-13	1.10533e-12	0.004289	1	0
HAPLN1	1404	broad.mit.edu	37	5	82937337	82937337	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:82937337T>A	uc003kim.2	-	4	1114	c.1043A>T	c.(1042-1044)TAC>TTC	p.Y348F	HAPLN1_uc003kin.2_Missense_Mutation_p.Y348F	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	348	Link 2.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		TCTGAAGCAGTAGACACCATA	0.448			NA											24	109					0	0	0.005443	0	0
EDIL3	10085	broad.mit.edu	37	5	83549934	83549934	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:83549934G>T	uc003kio.1	-	2	583	c.164C>A	c.(163-165)ACA>AAA	p.T55K	EDIL3_uc003kip.1_Missense_Mutation_p.T55K	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	55	EGF-like 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GTTGGGGTCTGTGAAGCCATC	0.403			NA											3	20					0.00024832	0.000286393	0.009096	1	0
GPR98	84059	broad.mit.edu	37	5	89933730	89933731	+	Nonsense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:89933730_89933731GG>TT	uc003kju.2	+	11	2301_2302	c.2205_2206GG>TT	c.(2203-2208)CCGGAA>CCTTAA	p.E736*	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	736	Calx-beta 5.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATGACATACCGGAAATGAATGA	0.351			NA											8	30					0	0	0.004672	0	0
MCTP1	79772	broad.mit.edu	37	5	94353173	94353173	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:94353173C>G	uc003kkx.2	-	2	736	c.736G>C	c.(736-738)GCT>CCT	p.A246P	MCTP1_uc003kkv.2_Missense_Mutation_p.A25P|MCTP1_uc003kkw.2_Missense_Mutation_p.A25P|MCTP1_uc003kkz.2_Intron	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	246					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		CTGGTTCCAGCAGTGTTTATT	0.383			NA											15	22					0	0	0.00245	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147663	100147663	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:100147663C>A	uc003knk.2	-	5	1296	c.968G>T	c.(967-969)AGG>ATG	p.R323M		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	323	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		GGAAAAGTACCTATATTTTAA	0.353			NA											6	10					2.0095e-06	2.62175e-06	0.001984	1	0
SRFBP1	153443	broad.mit.edu	37	5	121356024	121356024	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:121356024G>T	uc003kst.1	+	6	666	c.594G>T	c.(592-594)GTG>GTT	p.V198V		NM_152546	NP_689759	Q8NEF9	SRFB1_HUMAN	serum response factor binding protein 1	198					regulation of transcription, DNA-dependent|transcription, DNA-dependent	perinuclear region of cytoplasm					0		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000227)|Epithelial(69;0.000365)|all cancers(49;0.00517)		CTAAAGCAGTGACTATTGCAA	0.383			NA											4	24					0.00024832	0.000286393	0.009096	1	0
CEP120	153241	broad.mit.edu	37	5	122717864	122717864	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:122717864C>A	uc003ktk.2	-	15	2126	c.2044G>T	c.(2044-2046)GCT>TCT	p.A682S	CEP120_uc011cwq.1_Missense_Mutation_p.A491S|CEP120_uc010jcz.1_Missense_Mutation_p.A656S	NM_153223	NP_694955	Q8N960	CE120_HUMAN	coiled-coil domain containing 100	682	Potential.					centrosome				ovary(1)	1						TCTGCAAGAGCCTGCATATGA	0.368			NA											13	24					8.60227e-14	1.44648e-13	0.004007	1	0
MEGF10	84466	broad.mit.edu	37	5	126771134	126771134	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:126771134G>T	uc003kuh.3	+	17	2419	c.2057G>T	c.(2056-2058)AGA>ATA	p.R686I	MEGF10_uc003kui.3_Missense_Mutation_p.R686I	NM_032446	NP_115822	Q96KG7	MEG10_HUMAN	multiple EGF-like-domains 10 precursor	686	Extracellular (Potential).|EGF-like 12.|Necessary for interaction with AP2M1, self-assembly and formation of the irregular, mosaic-like adhesion pattern.				cell adhesion|phagocytosis	basolateral plasma membrane|cell projection|integral to membrane|phagocytic cup				ovary(4)	4		Prostate(80;0.165)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0657)|Epithelial(69;0.123)		CCCATTGACAGATCTTGTCAG	0.423			NA											9	10					1.12685e-05	1.40753e-05	0.004482	1	0
FBN2	2201	broad.mit.edu	37	5	127637170	127637170	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:127637170C>G	uc003kuu.2	-	47	6389	c.5950G>C	c.(5950-5952)GTG>CTG	p.V1984L		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1984	EGF-like 33; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TTTCTGCACACCTGACCAAAA	0.368			NA											17	18					0	0	0.010504	0	0
FBN2	2201	broad.mit.edu	37	5	127685063	127685063	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:127685063C>A	uc003kuu.2	-	23	3404	c.2965G>T	c.(2965-2967)GAT>TAT	p.D989Y	FBN2_uc003kuv.2_Missense_Mutation_p.D956Y	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	989	EGF-like 14; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CCAGTCCCATCCAACGTAAGG	0.453			NA											9	10					1.12685e-05	1.40753e-05	0.004482	1	0
KDM3B	51780	broad.mit.edu	37	5	137708510	137708510	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:137708510A>T	uc003lcy.1	+	2	540	c.340A>T	c.(340-342)ATT>TTT	p.I114F	KDM3B_uc010jew.1_5'UTR	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	114					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						TCGAGTCTCCATTGCACAATG	0.498			NA											11	12					0	0	0.001368	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140794562	140794563	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:140794562_140794563GG>TT	uc003lkl.1	+	1	1820_1821	c.1820_1821GG>TT	c.(1819-1821)TGG>TTT	p.W607F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.W607F|PCDHGB7_uc003lkm.2_5'Flank|PCDHGB7_uc003lkn.1_5'Flank	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	607	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGAACGCCTGGCTGTCCTACC	0.708			NA											27	32					0	0	0.004672	0	0
PPP2R2B	5521	broad.mit.edu	37	5	146030164	146030164	+	Missense_Mutation	SNP	C	C	A	rs143485788	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:146030164C>A	uc003loe.2	-	5	1096	c.571G>T	c.(571-573)GCT>TCT	p.A191S	PPP2R2B_uc010jgm.2_Missense_Mutation_p.A180S|PPP2R2B_uc003log.3_Missense_Mutation_p.A191S|PPP2R2B_uc003lof.3_Missense_Mutation_p.A191S|PPP2R2B_uc003loi.3_Missense_Mutation_p.A194S|PPP2R2B_uc003loh.3_Missense_Mutation_p.A191S|PPP2R2B_uc003loj.3_Missense_Mutation_p.A171S|PPP2R2B_uc003lok.3_Missense_Mutation_p.A180S|PPP2R2B_uc011dbu.1_Missense_Mutation_p.A197S|PPP2R2B_uc011dbv.1_Missense_Mutation_p.A249S	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	191	WD 3.				apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			AGGTCATCAGCGGACATGTAG	0.423			NA											8	17					0.000157383	0.000182879	0.00308	1	0
SAP30L	79685	broad.mit.edu	37	5	153835567	153835567	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:153835567G>T	uc003lvk.2	+	4	1179	c.531G>T	c.(529-531)GAG>GAT	p.E177D	SAP30L_uc003lvm.3_RNA|SAP30L_uc011ddc.1_Missense_Mutation_p.E136D|SAP30L_uc011ddd.1_Missense_Mutation_p.E131D	NM_024632	NP_078908	Q9HAJ7	SP30L_HUMAN	SAP30-like isoform 1	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|metal ion binding				0	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			AGAAATCGGAGGGTGGCAAGC	0.433			NA											16	33					3.45872e-05	4.2515e-05	0.004007	1	0
KIF4B	285643	broad.mit.edu	37	5	154394958	154394958	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:154394958T>A	uc010jih.1	+	1	1699	c.1539T>A	c.(1537-1539)ACT>ACA	p.T513T		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	513	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CTTTTACCACTCAGCATGCTC	0.498			NA											11	33					0	0	0.008291	0	0
HAVCR2	84868	broad.mit.edu	37	5	156533651	156533651	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:156533651C>A	uc003lwk.1	-	2	525	c.381G>T	c.(379-381)TTG>TTT	p.L127F	HAVCR2_uc003lwl.2_Missense_Mutation_p.L127F	NM_032782	NP_116171	Q8TDQ0	HAVR2_HUMAN	T cell immunoglobulin mucin 3 precursor	127	Extracellular (Potential).					integral to membrane					0	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.0999)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GTTTGATGACCAACTTCAGGT	0.408			NA											6	17					0.00116845	0.00129404	0.001168	1	0
GABRA6	2559	broad.mit.edu	37	5	161113970	161113970	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:161113970T>C	uc003lyu.2	+	3	524	c.186T>C	c.(184-186)ATT>ATC	p.I62I	GABRA6_uc003lyv.2_5'Flank	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	62	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	AAACAGACATTTATGTGACCA	0.458			NA								TCGA Ovarian(5;0.080)			3	53					0	0	0.004672	0	0
GABRG2	2566	broad.mit.edu	37	5	161576309	161576309	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:161576309A>G	uc003lyz.3	+	8	1476	c.1118A>G	c.(1117-1119)AAG>AGG	p.K373R	GABRG2_uc010jjc.2_Missense_Mutation_p.K413R|GABRG2_uc003lyy.3_Missense_Mutation_p.K373R|GABRG2_uc011dej.1_Missense_Mutation_p.K278R	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	373	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		GATAAAAAGAAGAAAAACCCT	0.388			NA											6	22					0	0	0.001984	0	0
ODZ2	57451	broad.mit.edu	37	5	167674058	167674058	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:167674058C>A	uc010jjd.2	+	27	6087	c.6087C>A	c.(6085-6087)GTC>GTA	p.V2029V	ODZ2_uc003lzr.3_Silent_p.V1799V|ODZ2_uc003lzt.3_Silent_p.V1402V|ODZ2_uc010jje.2_Silent_p.V1293V	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		GTACCGCCGTCACCTTCGGGT	0.542			NA											17	33					9.16793e-09	1.32869e-08	0.00499	1	0
FBLL1	345630	broad.mit.edu	37	5	167957216	167957216	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:167957216G>A	uc011dep.1	+	1	635	c.422G>A	c.(421-423)CGC>CAC	p.R141H		NR_024356				RecName: Full=rRNA/tRNA 2'-O-methyltransferase fibrillarin-like protein 1;          EC=2.1.1.-;												0						CTCAAGTACCGCATGCTCATC	0.662			NA											5	22					0	0	0.000602	0	0
PANK3	79646	broad.mit.edu	37	5	167995915	167995915	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:167995915T>C	uc003lzz.1	-	2	417	c.117A>G	c.(115-117)CAA>CAG	p.Q39Q		NM_024594	NP_078870	Q9H999	PANK3_HUMAN	pantothenate kinase 3	39					coenzyme A biosynthetic process	cytoplasm|nucleus	ATP binding|pantothenate kinase activity			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0441)|all_lung(126;0.0909)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0989)|OV - Ovarian serous cystadenocarcinoma(192;0.147)|Epithelial(171;0.188)		CAACTTCTTCTTGCTCTTCCT	0.423			NA											16	28					0	0	0.003163	0	0
SLIT3	6586	broad.mit.edu	37	5	168201290	168201290	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:168201290C>T	uc003mab.2	-	13	1665	c.1245G>A	c.(1243-1245)CTG>CTA	p.L415L	SLIT3_uc010jjg.2_Silent_p.L415L|SLIT3_uc010jji.2_Silent_p.L415L|SLIT3_uc003mac.1_Silent_p.L212L	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	415	LRR 11.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			TGATGGTCTGCAGCTTGTTGT	0.572	Ovarian(29;311 847 10864 17279 24903)		NA											48	97					0	0	0.00361	0	0
SLIT3	6586	broad.mit.edu	37	5	168310291	168310292	+	Missense_Mutation	DNP	CC	CC	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:168310291_168310292CC>AA	uc003mab.2	-	5	883_884	c.463_464GG>TT	c.(463-465)GGC>TTC	p.G155F	SLIT3_uc010jjg.2_Missense_Mutation_p.G155F|SLIT3_uc010jji.2_Missense_Mutation_p.G155F	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	155	LRR 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATCGGTGATGCCGCGGAACGCC	0.505	Ovarian(29;311 847 10864 17279 24903)		NA											11	21					0	0	0.004672	0	0
DOCK2	1794	broad.mit.edu	37	5	169507218	169507218	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:169507218G>A	uc003maf.2	+	50	5298	c.5218G>A	c.(5218-5220)GCC>ACC	p.A1740T	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.A1232T|DOCK2_uc003mah.2_Missense_Mutation_p.A296T	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1740					actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GGAGCATGCGGCCATCCCCCT	0.557			NA											10	29					0	0	0.006214	0	0
GABRP	2568	broad.mit.edu	37	5	170222293	170222293	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:170222293G>T	uc003mau.2	+	5	520	c.322G>T	c.(322-324)GAT>TAT	p.D108Y	GABRP_uc011dev.1_Missense_Mutation_p.D108Y	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	108	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTTCACTCTGGATGCCCGCCT	0.572			NA											36	64					3.86903e-22	7.19622e-22	0.002836	1	0
GABRP	2568	broad.mit.edu	37	5	170235603	170235603	+	Splice_Site	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:170235603G>A	uc003mau.2	+	8	878	c.680_splice	c.e8-1	p.G227_splice	GABRP_uc011dev.1_Splice_Site_p.G227_splice	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi							cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TACCCTTTCAGGAAATTACAC	0.403			NA											8	28					0	0	0.004482	0	0
STK10	6793	broad.mit.edu	37	5	171481639	171481639	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:171481639G>T	uc003mbo.1	-	17	2886	c.2586C>A	c.(2584-2586)CAC>CAA	p.H862Q		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	862	Gln-rich.|Potential.						ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TCTGGTTCTCGTGTTTCTGCT	0.652			NA											25	86					4.72057e-08	6.64869e-08	0.003954	1	0
SH3PXD2B	285590	broad.mit.edu	37	5	171765999	171765999	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:171765999C>A	uc003mbr.2	-	13	2281	c.2110G>T	c.(2110-2112)GAG>TAG	p.E704*		NM_001017995	NP_001017995	A1X283	SPD2B_HUMAN	SH3 and PX domains 2B	704					adipose tissue development|bone development|cell communication|cell differentiation|eye development|heart development|podosome assembly	cell junction|cell projection|cytoplasm|podosome	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-5-phosphate binding|SH2 domain binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.011)|all_lung(126;0.0175)	Medulloblastoma(196;0.0207)|all_neural(177;0.0625)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CCAGGCCCCTCTCCTGGGAGG	0.642			NA											8	20					1.06961e-07	1.48315e-07	0.00308	1	0
RPL26L1	51121	broad.mit.edu	37	5	172395553	172395553	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:172395553G>T	uc003mcc.2	+	3	302	c.260G>T	c.(259-261)CGT>CTT	p.R87L		NM_016093	NP_057177	Q9UNX3	RL26L_HUMAN	ribosomal protein L26-like 1	87					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0	Renal(175;0.000159)|Lung NSC(126;0.00344)|all_lung(126;0.00594)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CGGGTGCAGCGTGAGAAGGCC	0.502			NA											20	90					8.34094e-07	1.10433e-06	0.008871	1	0
UNC5A	90249	broad.mit.edu	37	5	176289768	176289768	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:176289768C>T	uc003mey.2	+	2	406	c.214C>T	c.(214-216)CAG>TAG	p.Q72*	UNC5A_uc003mex.1_Nonsense_Mutation_p.Q72*|UNC5A_uc010jkg.1_5'UTR	NM_133369	NP_588610	Q6ZN44	UNC5A_HUMAN	netrin receptor Unc5h1 precursor	72	Ig-like.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane|plasma membrane				skin(1)	1	all_cancers(89;0.000119)|Renal(175;0.000269)|Lung NSC(126;0.00696)|all_lung(126;0.0115)	Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GCCCGCCACGCAGATCTTCTT	0.637			NA											40	89					0	0	0.011902	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178580565	178580565	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:178580565A>G	uc003mjw.2	-	9	1442	c.1442T>C	c.(1441-1443)CTC>CCC	p.L481P	ADAMTS2_uc011dgm.1_Missense_Mutation_p.L481P	NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	481	Disintegrin.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CAGTCCCGGGAGCTGGGGCAG	0.667			NA											4	17					0	0	0.009096	0	0
MAML1	9794	broad.mit.edu	37	5	179192625	179192625	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:179192625G>T	uc003mkm.2	+	2	877	c.614G>T	c.(613-615)AGT>ATT	p.S205I	MAML1_uc003mkn.1_Missense_Mutation_p.S205I	NM_014757	NP_055572	Q92585	MAML1_HUMAN	mastermind-like 1	205					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	peptide antigen binding|protein kinase binding|transcription coactivator activity			lung(4)|ovary(2)	6	all_cancers(89;0.000197)|all_epithelial(37;6.7e-05)|Renal(175;0.000159)|Lung NSC(126;0.00121)|all_lung(126;0.00218)	all_cancers(40;0.0308)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			AGTAACCCCAGTGAGTCATTT	0.537			NA											8	25					7.48243e-07	9.9376e-07	0.006214	1	0
LTC4S	4056	broad.mit.edu	37	5	179221117	179221117	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:179221117C>A	uc003mko.2	+	1	132	c.36C>A	c.(34-36)ACC>ACA	p.T12T	MAML1_uc003mkn.1_3'UTR	NM_145867	NP_665874	Q16873	LTC4S_HUMAN	leukotriene C4 synthase	12	Helical.				hormone biosynthetic process|leukotriene biosynthetic process|leukotriene production involved in inflammatory response|prostanoid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome|nuclear outer membrane	enzyme activator activity|glutathione peroxidase activity|leukotriene-C4 synthase activity|lipid binding				0	all_cancers(89;0.000201)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0525)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		Glutathione(DB00143)	CTGCTGTCACCCTCCTGGGAG	0.622			NA											11	29					9.70103e-10	1.45558e-09	0.008291	1	0
FLT4	2324	broad.mit.edu	37	5	180038481	180038481	+	Splice_Site	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:180038481T>A	uc003mma.3	-	27	3617	c.3538_splice	c.e27-1	p.E1180_splice	FLT4_uc003mlz.3_Splice_Site_p.E1180_splice	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2						positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CTCTTCCTCCTGGCGGGAACA	0.488	Colon(97;1075 1466 27033 27547 35871)		NA							Congenital_Hereditary_Lymphedema				8	29					0	0	0.004482	0	0
MGAT1	4245	broad.mit.edu	37	5	180219260	180219260	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:180219260C>A	uc003mmg.3	-	2	1207	c.712G>T	c.(712-714)GTC>TTC	p.V238F	MGAT1_uc010jlf.2_Missense_Mutation_p.V238F|MGAT1_uc010jlg.2_Missense_Mutation_p.V238F|MGAT1_uc003mmh.3_Missense_Mutation_p.V238F|MGAT1_uc010jlh.2_Missense_Mutation_p.V238F|MGAT1_uc003mmi.3_Missense_Mutation_p.V238F	NM_002406	NP_002397	P26572	MGAT1_HUMAN	mannosyl (alpha-1,3-)-glycoprotein	238	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(1)	1	all_cancers(89;1.11e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.0027)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00356)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CAGGCCGAGACGCACCACAGG	0.647			NA											16	44					3.41278e-10	5.20335e-10	0.00499	1	0
GMDS	2762	broad.mit.edu	37	6	1961137	1961137	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:1961137C>A	uc003mtq.2	-	5	599	c.409G>T	c.(409-411)GAT>TAT	p.D137Y		NM_001500	NP_001491	O60547	GMDS_HUMAN	GDP-mannose 4,6-dehydratase	137					'de novo' GDP-L-fucose biosynthetic process|GDP-mannose metabolic process|leukocyte cell-cell adhesion		coenzyme binding|GDP-mannose 4,6-dehydratase activity			central_nervous_system(1)	1	Ovarian(93;0.0733)	all_cancers(2;7.64e-19)|all_epithelial(2;3.05e-16)|Colorectal(2;0.00414)|all_hematologic(90;0.00997)|all_lung(73;0.0141)|Lung NSC(90;0.0802)		Epithelial(2;7.61e-06)|all cancers(2;0.000111)|STAD - Stomach adenocarcinoma(2;0.000231)|Colorectal(2;0.00445)|COAD - Colon adenocarcinoma(2;0.0125)|OV - Ovarian serous cystadenocarcinoma(45;0.0563)		TTAACTGCATCTAGAAGTCGT	0.478			NA											27	36					1.26454e-06	1.67294e-06	0.005443	1	0
TUBB2A	7280	broad.mit.edu	37	6	3155958	3155958	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:3155958C>A	uc003mvc.2	-	3	264	c.178G>T	c.(178-180)GTA>TTA	p.V60L	TUBB2A_uc003mvb.2_Missense_Mutation_p.V53L|TUBB2A_uc003mvd.2_Intron	NM_001069	NP_001060	Q13885	TBB2A_HUMAN	tubulin, beta 2	60					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			skin(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.0895)				GCCCGAGGTACATATTTGTTA	0.527			NA											7	38					1.06961e-07	1.48315e-07	0.00308	1	0
F13A1	2162	broad.mit.edu	37	6	6305730	6305730	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:6305730C>A	uc003mwv.2	-	3	296	c.173G>T	c.(172-174)TGG>TTG	p.W58L	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	58					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	GTTAGTGTCCCATCTCTCCTT	0.403			NA											10	36					0.000442599	0.000502282	0.006214	1	0
GCM2	9247	broad.mit.edu	37	6	10874559	10874559	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:10874559G>T	uc003mzn.3	-	5	1262	c.1190C>A	c.(1189-1191)CCT>CAT	p.P397H	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	397					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				TTTCATAGCAGGGGGCTGGTA	0.547			NA											38	91					3.62531e-18	6.53555e-18	0.004289	1	0
C6orf105	84830	broad.mit.edu	37	6	11723638	11723638	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:11723638T>A	uc003nab.2	-	5	890	c.602A>T	c.(601-603)TAC>TTC	p.Y201F	C6orf105_uc003naa.2_RNA|C6orf105_uc011dip.1_Missense_Mutation_p.Y219F	NM_032744	NP_116133	Q96IZ2	CF105_HUMAN	hypothetical protein LOC84830 isoform 2	201	Helical; (Potential).					integral to membrane					0	Ovarian(93;0.0848)|Breast(50;0.0871)	all_hematologic(90;0.135)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.193)			GATGAAGACGTAGCTGAGAGA	0.493			NA											33	153					0	0	0.002836	0	0
SLC17A4	10050	broad.mit.edu	37	6	25762211	25762211	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:25762211C>G	uc003nfe.2	+	2	140	c.21C>G	c.(19-21)GTC>GTG	p.V7V	SLC17A4_uc011djx.1_Silent_p.V7V|SLC17A4_uc003nff.1_5'UTR|SLC17A4_uc003nfg.2_5'UTR	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	7					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						GACCAGATGTCAAGGCTACAG	0.403			NA											7	21					0	0	0.004482	0	0
PGBD1	84547	broad.mit.edu	37	6	28251657	28251657	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:28251657G>T	uc003nky.2	+	2	437	c.67G>T	c.(67-69)GAT>TAT	p.D23Y	PGBD1_uc003nkz.2_Missense_Mutation_p.D23Y	NM_032507	NP_115896	Q96JS3	PGBD1_HUMAN	piggyBac transposable element derived 1	23					viral reproduction	membrane|nucleus	scavenger receptor activity|sequence-specific DNA binding transcription factor activity			ovary(4)	4						GAAGGAGGAAGATCCCACCTG	0.537			NA											14	117					1.5842e-08	2.2862e-08	0.001855	1	0
SCAND3	114821	broad.mit.edu	37	6	28543261	28543261	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:28543261C>A	uc003nlo.2	-	3	1839	c.1221G>T	c.(1219-1221)CGG>CGT	p.R407R		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	407	Integrase catalytic.				DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACTTTAATGACCGCAAAAAAG	0.383			NA											5	40					0.000602214	0.000676645	0.000602	1	0
HLA-J	3137	broad.mit.edu	37	6	29976208	29976208	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:29976208G>C	uc003rtl.3	+	2	473	c.111G>C	c.(109-111)AAG>AAC	p.K37N	HLA-G_uc011dmb.1_Intron|NCRNA00171_uc011dme.1_Intron|HLA-J_uc003nou.3_RNA|HLA-J_uc003nov.3_RNA					Homo sapiens major histocompatibility complex, class I, J (pseudogene), mRNA (cDNA clone IMAGE:4694038).												0						TGCAGCACAAGGGGCTGCCCA	0.587			NA											9	37					0	0	0.004482	0	0
TRIM26	7726	broad.mit.edu	37	6	30166684	30166684	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:30166684C>A	uc003npr.2	-	3	406	c.197G>T	c.(196-198)CGA>CTA	p.R66L	TRIM26_uc003nps.2_Missense_Mutation_p.R66L|TRIM26_uc010jry.2_5'UTR|TRIM26_uc003npt.2_Missense_Mutation_p.R66L|TRIM26_uc003npu.1_Missense_Mutation_p.R66L	NM_003449	NP_003440	Q12899	TRI26_HUMAN	tripartite motif-containing 26	66							DNA binding|zinc ion binding			ovary(2)|lung(1)	3						CCACACGGGTCGGATGTTCTC	0.632			NA											19	29					5.03518e-11	7.86025e-11	0.007413	1	0
ATF6B	1388	broad.mit.edu	37	6	32087620	32087620	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:32087620G>A	uc003nzn.2	-	9	980	c.947C>T	c.(946-948)TCC>TTC	p.S316F	TNXB_uc010jts.1_5'Flank|ATF6B_uc003nzm.1_5'Flank|ATF6B_uc003nzo.2_Missense_Mutation_p.S313F|ATF6B_uc003nzp.1_Missense_Mutation_p.S5F	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	316	Cytoplasmic (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AGGCGGGCAGGAGTTTCCAGG	0.577			NA											15	53					0	0	0.004007	0	0
NOTCH4	4855	broad.mit.edu	37	6	32183075	32183075	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:32183075A>T	uc003obb.2	-	12	2088	c.1949T>A	c.(1948-1950)CTC>CAC	p.L650H	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	650	EGF-like 16.|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ATCAGGACAGAGGCAGTTGGC	0.602			NA											4	16					0	0	0.009096	0	0
RING1	6015	broad.mit.edu	37	6	33179254	33179254	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:33179254G>T	uc003odk.2	+	5	969	c.775G>T	c.(775-777)GGT>TGT	p.G259C	RING1_uc011dqx.1_Missense_Mutation_p.G259C|RING1_uc003odl.2_Missense_Mutation_p.G230C	NM_002931	NP_002922	Q06587	RING1_HUMAN	ring finger protein 1	259	Gly-rich.|Necessary for interaction with CBX2 (By similarity).				histone H2A monoubiquitination|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear speck|PcG protein complex	protein binding|zinc ion binding			ovary(1)|skin(1)	2						CCCAGAGCCAGGTGGAGAAAT	0.677			NA											3	11					0.004672	0.00503002	0.004672	1	0
C6orf106	64771	broad.mit.edu	37	6	34614553	34614553	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:34614553C>A	uc003ojr.2	-	3	581	c.336G>T	c.(334-336)GGG>GGT	p.G112G	C6orf106_uc003ojs.2_Intron	NM_024294	NP_077270	Q9H6K1	CF106_HUMAN	chromosome 6 open reading frame 106 isoform a	112										skin(2)|ovary(1)	3						TAAGACAAACCCCTGGAGGCC	0.468			NA											17	111					3.52763e-06	4.5192e-06	0.00499	1	0
SCUBE3	222663	broad.mit.edu	37	6	35210811	35210811	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:35210811G>T	uc003okf.1	+	15	1713	c.1707G>T	c.(1705-1707)CTG>CTT	p.L569L	SCUBE3_uc003okg.1_Silent_p.L568L|SCUBE3_uc003okh.1_Silent_p.L456L	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	569					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						GCTGTGGGCTGCCCTGCCTCC	0.622			NA											10	56					6.40141e-05	7.65288e-05	0.010729	1	0
BTBD9	114781	broad.mit.edu	37	6	38560523	38560523	+	Nonsense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:38560523T>A	uc003ooa.3	-	5	1219	c.643A>T	c.(643-645)AAG>TAG	p.K215*	BTBD9_uc003ony.3_Nonsense_Mutation_p.K147*|BTBD9_uc010jwv.2_Nonsense_Mutation_p.K147*|BTBD9_uc010jww.2_RNA|BTBD9_uc010jwx.2_Nonsense_Mutation_p.K215*	NM_052893	NP_443125	Q96Q07	BTBD9_HUMAN	BTB (POZ) domain containing 9 isoform a	215	BACK.				cell adhesion						0						TGATTCTCCTTTGAATTGTGC	0.428			NA											6	34					0	0	0.001168	0	0
SLC29A1	2030	broad.mit.edu	37	6	44197352	44197352	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:44197352C>T	uc003owu.1	+	4	467	c.138C>T	c.(136-138)TCC>TCT	p.S46S	SLC29A1_uc011dvp.1_Silent_p.S65S|SLC29A1_uc003owv.1_Silent_p.S46S|SLC29A1_uc003oww.1_Silent_p.S125S|SLC29A1_uc011dvq.1_Silent_p.S88S|SLC29A1_uc003owx.1_Silent_p.S46S|SLC29A1_uc003owy.1_Silent_p.S46S|SLC29A1_uc003owz.1_Silent_p.S46S	NM_004955	NP_004946	Q99808	S29A1_HUMAN	equilibrative nucleoside transporter 1	46	Extracellular (Potential).				nucleobase, nucleoside and nucleotide metabolic process	apical plasma membrane|basolateral plasma membrane|integral to plasma membrane|membrane fraction	nucleoside transmembrane transporter activity|protein binding			large_intestine(2)|skin(1)	3	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)		Troglitazone(DB00197)	TGGACATGTCCCAGAATGTGT	0.448			NA											7	51					0	0	0.001984	0	0
PLA2G7	7941	broad.mit.edu	37	6	46672422	46672422	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:46672422C>G	uc010jzf.2	-	12	1470	c.1201G>C	c.(1201-1203)GAT>CAT	p.D401H		NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	401					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			TGATCAAAATCTTTATGAAGT	0.343			NA											4	25					0	0	0.001168	0	0
PLA2G7	7941	broad.mit.edu	37	6	46672424	46672424	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:46672424T>G	uc010jzf.2	-	12	1468	c.1199A>C	c.(1198-1200)AAA>ACA	p.K400T		NM_005084	NP_005075	Q13093	PAFA_HUMAN	phospholipase A2, group VII	400					inflammatory response|lipid catabolic process	extracellular space	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding				0			Lung(136;0.192)			ATCAAAATCTTTATGAAGTCC	0.338			NA											4	25					0	0	0.001168	0	0
GPR111	222611	broad.mit.edu	37	6	47649714	47649714	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:47649714C>A	uc010jzj.1	+	6	1420	c.1419C>A	c.(1417-1419)AGC>AGA	p.S473R	GPR111_uc010jzk.1_Missense_Mutation_p.S405R|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	473	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TAGTCTGGAGCCAAGTGACAA	0.453			NA											25	50					1.1804e-14	2.04554e-14	0.003954	1	0
C6orf138	442213	broad.mit.edu	37	6	47847003	47847003	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:47847003G>A	uc011dwm.1	-	3	1611	c.1526C>T	c.(1525-1527)CCC>CTC	p.P509L	C6orf138_uc011dwn.1_Missense_Mutation_p.P273L	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	526						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						GTACTCTAGGGGCTCATAGAC	0.473			NA											7	9					0	0	0.001984	0	0
DEFB113	245927	broad.mit.edu	37	6	49936501	49936501	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:49936501G>A	uc011dwq.1	-	2	138	c.138C>T	c.(136-138)TGC>TGT	p.C46C		NM_001037729	NP_001032818	Q30KQ7	DB113_HUMAN	beta-defensin 113 precursor	46					defense response to bacterium	extracellular region					0	Lung NSC(77;0.042)					CCCAGCTGTTGCATTCCGGCT	0.403			NA											4	18					0	0	0.009096	0	0
DEFB110	245913	broad.mit.edu	37	6	49986759	49986759	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:49986759C>A	uc003pac.2	-	2	181	c.135G>T	c.(133-135)CAG>CAT	p.Q45H	DEFB110_uc011dwr.1_Intron	NM_001037497	NP_001032586	Q30KQ9	DB110_HUMAN	beta-defensin 110 isoform a	45					defense response to bacterium	extracellular region				ovary(1)	1	Lung NSC(77;0.042)					TTTCATGACACTGATTTTTAC	0.403			NA											27	41					4.7796e-09	7.01669e-09	0.004656	1	0
TFAP2B	7021	broad.mit.edu	37	6	50807921	50807921	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:50807921T>G	uc003pag.2	+	6	1159	c.993T>G	c.(991-993)TTT>TTG	p.F331L		NM_003221	NP_003212	Q92481	AP2B_HUMAN	transcription factor AP-2 beta	331					nervous system development|positive regulation of transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity				0	Lung NSC(77;0.156)					AAACGGAGTTTCCCGCCAAAG	0.478	Pancreas(116;1373 2332 5475 10752)		NA											31	122					0	0	0.009535	0	0
PKHD1	5314	broad.mit.edu	37	6	51524559	51524559	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:51524559T>A	uc003pah.1	-	61	10641	c.10365A>T	c.(10363-10365)TCA>TCT	p.S3455S		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3455	Extracellular (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					AAGTAGACACTGACCCAGAAG	0.403			NA											6	42					0	0	0.001168	0	0
IL17A	3605	broad.mit.edu	37	6	52052579	52052579	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:52052579G>T	uc003pak.1	+	2	251	c.206G>T	c.(205-207)CGA>CTA	p.R69L		NM_002190	NP_002181	Q16552	IL17_HUMAN	interleukin 17A precursor	69					apoptosis|cell-cell signaling|fibroblast activation|immune response|inflammatory response|positive regulation of interleukin-23 production|positive regulation of osteoclast differentiation|positive regulation of transcription from RNA polymerase II promoter|protein glycosylation	extracellular space	cytokine activity				0	Lung NSC(77;0.116)					TACTACAACCGATCCACCTCA	0.448			NA											19	88					4.63292e-17	8.2644e-17	0.008871	1	0
GSTA1	2938	broad.mit.edu	37	6	52657700	52657700	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:52657700A>C	uc003paz.2	-	6	612	c.500T>G	c.(499-501)GTC>GGC	p.V167G		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	167	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	AAGCTCCTCGACGTAGTAGAG	0.532			NA											5	130					0	0	0.006214	0	0
GSTA1	2938	broad.mit.edu	37	6	52657702	52657702	+	Nonsense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:52657702G>C	uc003paz.2	-	6	610	c.498C>G	c.(496-498)TAC>TAG	p.Y166*		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	166	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	GCTCCTCGACGTAGTAGAGAA	0.527			NA											22	102					0	0	0.012319	0	0
GSTA1	2938	broad.mit.edu	37	6	52657705	52657705	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:52657705G>T	uc003paz.2	-	6	607	c.495C>A	c.(493-495)TAC>TAA	p.Y165*		NM_145740	NP_665683	P08263	GSTA1_HUMAN	glutathione S-transferase alpha 1	165	GST C-terminal.				glutathione metabolic process|xenobiotic metabolic process	cytosol	glutathione transferase activity			ovary(1)	1	Lung NSC(77;0.118)				Amsacrine(DB00276)|Busulfan(DB01008)|Glutathione(DB00143)	CCTCGACGTAGTAGAGAAGTT	0.527			NA											5	124					0.000442599	0.000502282	0.006214	1	0
ICK	22858	broad.mit.edu	37	6	52871145	52871145	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:52871145A>G	uc003pbh.2	-	14	2202	c.1712T>C	c.(1711-1713)GTA>GCA	p.V571A	ICK_uc003pbi.2_Missense_Mutation_p.V571A	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	571					intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TGCTAGGTGTACCCTCTGCAT	0.338			NA											4	56					0	0	0.009096	0	0
GFRAL	389400	broad.mit.edu	37	6	55198732	55198732	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:55198732C>G	uc003pcm.1	+	3	392	c.306C>G	c.(304-306)ATC>ATG	p.I102M		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	102	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AAAAATGTATCAATAAATCAG	0.284			NA											21	71					0	0	0.002299	0	0
LGSN	51557	broad.mit.edu	37	6	63990329	63990329	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:63990329A>T	uc003peh.2	-	4	1161	c.1127T>A	c.(1126-1128)CTG>CAG	p.L376Q	LGSN_uc003pei.2_3'UTR	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	376					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	ACTCTTCTTCAGGTCTTTCCT	0.458			NA											21	63					0	0	0.012319	0	0
BAI3	577	broad.mit.edu	37	6	70064178	70064178	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:70064178A>G	uc003pev.3	+	27	3961	c.3513A>G	c.(3511-3513)GCA>GCG	p.A1171A	BAI3_uc010kak.2_Silent_p.A1171A|BAI3_uc011dxx.1_Silent_p.A377A	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1171	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CCATCAATGCAGATTCTTCGA	0.388			NA											15	61					0	0	0.007413	0	0
COL19A1	1310	broad.mit.edu	37	6	70890247	70890247	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:70890247C>A	uc003pfc.1	+	43	2828	c.2711C>A	c.(2710-2712)CCG>CAG	p.P904Q		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	904	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CCAGGGGAACCGGTGAGTTGG	0.448			NA											21	25					1.28384e-07	1.7601e-07	0.012319	1	0
COL9A1	1297	broad.mit.edu	37	6	71004241	71004241	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:71004241C>T	uc003pfg.3	-	5	484	c.325G>A	c.(325-327)GAA>AAA	p.E109K		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	109	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GAGTATTCTTCAGGCAGTCCA	0.393			NA											18	59					0	0	0.007413	0	0
COL9A1	1297	broad.mit.edu	37	6	71009794	71009794	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:71009794T>A	uc003pfg.3	-	4	410	c.251A>T	c.(250-252)CAG>CTG	p.Q84L		NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	84	Nonhelical region (NC4).|TSP N-terminal.				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GTAAGCCACCTGCAATGTAGC	0.363			NA											11	33					0	0	0.010729	0	0
SMAP1	60682	broad.mit.edu	37	6	71566579	71566579	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:71566579A>G	uc003pfr.2	+	9	1055	c.807A>G	c.(805-807)CCA>CCG	p.P269P	SMAP1_uc003pfs.2_Silent_p.P242P|SMAP1_uc010kao.2_Silent_p.P242P|SMAP1_uc010kap.2_Silent_p.P259P	NM_001044305	NP_001037770	Q8IYB5	SMAP1_HUMAN	stromal membrane-associated GTPase-activating	269					regulation of ARF GTPase activity	plasma membrane	ARF GTPase activator activity|zinc ion binding				0						CCTCTGCACCAGCAGCTGCAA	0.393			NA											7	27					0	0	0.004482	0	0
B3GAT2	135152	broad.mit.edu	37	6	71603926	71603926	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:71603926C>A	uc003pfv.2	-	2	1297	c.641G>T	c.(640-642)GGG>GTG	p.G214V	B3GAT2_uc011dxz.1_RNA|B3GAT2_uc003pfw.2_Missense_Mutation_p.G214V	NM_080742	NP_542780	Q9NPZ5	B3GA2_HUMAN	beta-1,3-glucuronyltransferase 2	214	Lumenal (Potential).				carbohydrate biosynthetic process	Golgi membrane|integral to membrane	galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity|metal ion binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						GTAGCGCCGCCCACCAACCAG	0.547			NA											33	44					4.4194e-11	6.92441e-11	0.002836	1	0
C6orf150	115004	broad.mit.edu	37	6	74150094	74150094	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:74150094C>A	uc003pgx.1	-	3	1091	c.952G>T	c.(952-954)GTG>TTG	p.V318L		NM_138441	NP_612450	Q8N884	M21D1_HUMAN	hypothetical protein LOC115004	318											0						GTTATATCCACAGATATTTTT	0.413			NA											20	19					5.03518e-11	7.86025e-11	0.007413	1	0
COL12A1	1303	broad.mit.edu	37	6	75865471	75865471	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:75865471T>A	uc003phs.2	-	16	3516	c.3350A>T	c.(3349-3351)TAT>TTT	p.Y1117F	COL12A1_uc003pht.2_Intron	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1117	Fibronectin type-III 8.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TGTGACTTTATAACCCTTCAC	0.498			NA											22	83					0	0	0.00278	0	0
IBTK	25998	broad.mit.edu	37	6	82910357	82910357	+	Silent	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:82910357T>G	uc003pjl.1	-	20	3386	c.2859A>C	c.(2857-2859)GTA>GTC	p.V953V	IBTK_uc011dyu.1_5'UTR|IBTK_uc011dyv.1_Silent_p.V953V|IBTK_uc011dyw.1_Silent_p.V752V|IBTK_uc010kbi.1_Silent_p.V647V|IBTK_uc003pjm.2_Silent_p.V953V	NM_015525	NP_056340	Q9P2D0	IBTK_HUMAN	inhibitor of Bruton's tyrosine kinase	953					negative regulation of protein phosphorylation|release of sequestered calcium ion into cytosol	cytoplasm|membrane|nucleus	protein kinase binding|protein tyrosine kinase inhibitor activity			ovary(2)|central_nervous_system(2)	4		all_cancers(76;3.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.0037)		BRCA - Breast invasive adenocarcinoma(397;0.0901)		CTCCATCTTCTACTTCCAAAT	0.269			NA											5	19					0	0	0.000602	0	0
CYB5R4	51167	broad.mit.edu	37	6	84634200	84634200	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:84634200G>C	uc003pkf.2	+	10	835	c.703G>C	c.(703-705)GAG>CAG	p.E235Q		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	235	CS.				cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		GCGGGTTGTTGAGAGTGTGGG	0.328	Esophageal Squamous(86;1289 1332 25971 40349 52675)		NA											9	34					0	0	0.006214	0	0
C6orf162	57150	broad.mit.edu	37	6	88049924	88049924	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:88049924G>T	uc003plp.1	+	4	315	c.226G>T	c.(226-228)GAC>TAC	p.D76Y	C6orf164_uc003plr.2_Intron|C6orf162_uc003plq.1_Missense_Mutation_p.D76Y	NM_001042493	NP_001035958	Q96KF7	CF162_HUMAN	hypothetical protein LOC57150	76						integral to membrane					0		all_cancers(76;3.81e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.3e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0164)		GAATAAAAAGGACCTCTATGA	0.393			NA											12	22					1.61879e-10	2.4927e-10	0.001368	1	0
PM20D2	135293	broad.mit.edu	37	6	89859008	89859008	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:89859008G>A	uc003pmz.2	+	2	585	c.490G>A	c.(490-492)GAA>AAA	p.E164K		NM_001010853	NP_001010853	Q8IYS1	P20D2_HUMAN	aminoacylase 1-like 2	164							hydrolase activity				0		all_cancers(76;9.47e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;0.000114)		BRCA - Breast invasive adenocarcinoma(108;0.00813)		AACCCCTGCAGAAGAAGATGG	0.403			NA											23	67					0	0	0.012319	0	0
GABRR2	2570	broad.mit.edu	37	6	89977760	89977760	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:89977760G>T	uc003pnb.2	-	5	651	c.643C>A	c.(643-645)CAG>AAG	p.Q215K	GABRR2_uc011dzx.1_Missense_Mutation_p.Q91K	NM_002043	NP_002034	P28476	GBRR2_HUMAN	gamma-aminobutyric acid (GABA) receptor, rho 2	215	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity				0		all_cancers(76;1.67e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.49e-10)|all_hematologic(105;7.77e-07)|all_epithelial(107;2.51e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0158)		GAACAGGTCTGGGAGTCCAGG	0.453			NA											3	8					0.004672	0.00503002	0.004672	1	0
RRAGD	58528	broad.mit.edu	37	6	90089038	90089038	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:90089038A>T	uc003pnd.3	-	4	947	c.664T>A	c.(664-666)TAT>AAT	p.Y222N	RRAGD_uc010kcc.2_Missense_Mutation_p.Y71N	NM_021244	NP_067067	Q9NQL2	RRAGD_HUMAN	Ras-related GTP binding D	222					cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade	lysosome|nucleus	GTP binding|protein heterodimerization activity			ovary(2)|central_nervous_system(1)	3		all_cancers(76;7.01e-07)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00139)		BRCA - Breast invasive adenocarcinoma(108;0.0144)		GAATGATCATATATGCTTGTC	0.373			NA											5	19					0	0	0.000602	0	0
LYRM2	57226	broad.mit.edu	37	6	90347478	90347478	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:90347478T>C	uc003pnm.2	-	2	208	c.169A>G	c.(169-171)AAA>GAA	p.K57E	LYRM2_uc010kce.1_RNA|LYRM2_uc003png.2_RNA|LYRM2_uc010kcf.1_RNA|LYRM2_uc010kcg.2_RNA|LYRM2_uc003pnl.3_RNA	NM_020466	NP_065199	Q9NU23	LYRM2_HUMAN	LYR motif containing 2	57											0		all_cancers(76;2.76e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;3.72e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0131)		GTGGCACTTTTGTTTCTTCTG	0.373			NA											35	124					0	0	0.006999	0	0
BACH2	60468	broad.mit.edu	37	6	90660542	90660542	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:90660542C>A	uc011eab.1	-	7	2092	c.1283G>T	c.(1282-1284)CGG>CTG	p.R428L	BACH2_uc003pnw.2_Missense_Mutation_p.R428L|BACH2_uc010kch.2_Missense_Mutation_p.R428L	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	428						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		CACGCTCCTCCGGTCCAGCTC	0.602			NA											10	51					9.70103e-10	1.45558e-09	0.008291	1	0
MANEA	79694	broad.mit.edu	37	6	96054232	96054232	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:96054232G>T	uc003poo.1	+	5	1480	c.1340G>T	c.(1339-1341)AGT>ATT	p.S447I		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	447	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		GAAAAATACAGTAAGGAAAGA	0.358			NA											7	17					0.00307968	0.00336253	0.00308	1	0
C6orf167	253714	broad.mit.edu	37	6	97677230	97677230	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:97677230C>A	uc003ppb.2	-	14	1845	c.1579G>T	c.(1579-1581)GGT>TGT	p.G527C	C6orf167_uc011eaf.1_Missense_Mutation_p.G487C	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	527					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		TTCTGTAGACCAACTTCAGTT	0.318			NA											6	11					0.00116845	0.00129404	0.001168	1	0
PRDM13	59336	broad.mit.edu	37	6	100056737	100056737	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:100056737C>A	uc003pqg.1	+	2	526	c.265C>A	c.(265-267)CCC>ACC	p.P89T		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	89	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		TGCAGACTTACCCGGAGGACA	0.582			NA											10	15					0.000978159	0.00109184	0.010729	1	0
SIM1	6492	broad.mit.edu	37	6	100838856	100838856	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:100838856G>T	uc003pqj.3	-	11	1889	c.1682C>A	c.(1681-1683)CCC>CAC	p.P561H	SIM1_uc010kcu.2_Missense_Mutation_p.P561H	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	561	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AATTTTGCTGGGTTCATGTGG	0.468			NA											6	60					3.59834e-05	4.39136e-05	0.001168	1	0
ASCC3	10973	broad.mit.edu	37	6	101073156	101073156	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:101073156C>A	uc003pqk.2	-	30	5026	c.4697G>T	c.(4696-4698)CGT>CTT	p.R1566L		NM_006828	NP_006819	Q8N3C0	HELC1_HUMAN	activating signal cointegrator 1 complex subunit	1566	Helicase C-terminal 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|microtubule cytoskeleton	ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(5)|skin(1)	6		all_cancers(76;1.45e-07)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(87;0.00149)|Hepatocellular(1;0.0893)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0539)|all cancers(137;0.103)|GBM - Glioblastoma multiforme(226;0.199)		ACGAGTTTGACGTCTTGATGA	0.398			NA											11	24					2.80697e-09	4.15305e-09	0.010729	1	0
PRDM1	639	broad.mit.edu	37	6	106543577	106543577	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:106543577C>T	uc003prd.2	+	3	613	c.379C>T	c.(379-381)CCT>TCT	p.P127S		NM_001198	NP_001189	O75626	PRDM1_HUMAN	PR domain containing 1, with ZNF domain isoform	127	SET.				negative regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(54)|ovary(1)|skin(1)	56	Breast(9;0.022)	all_cancers(87;2.2e-31)|all_epithelial(87;2.03e-21)|Acute lymphoblastic leukemia(125;4.99e-11)|all_lung(197;7.55e-09)|all_hematologic(75;5.82e-08)|Lung NSC(302;1.28e-06)|Colorectal(196;0.0112)|Ovarian(999;0.0365)		all cancers(137;1.83e-46)|Epithelial(106;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(136;1.99e-20)|GBM - Glioblastoma multiforme(226;3.72e-11)|BRCA - Breast invasive adenocarcinoma(108;1.38e-05)		TGACACAGTTCCTAAGAACGC	0.393			NA	D|N|Mis|F|S		DLBCL								5	18					0	0	0.000602	0	0
PDSS2	57107	broad.mit.edu	37	6	107595379	107595379	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:107595379G>A	uc003prt.2	-	3	774	c.484C>T	c.(484-486)CAT>TAT	p.H162Y	PDSS2_uc011eak.1_Missense_Mutation_p.H26Y|PDSS2_uc011eal.1_Missense_Mutation_p.H162Y|PDSS2_uc003pru.2_Missense_Mutation_p.H162Y|PDSS2_uc003prv.2_Missense_Mutation_p.H162Y	NM_020381	NP_065114	Q86YH6	DLP1_HUMAN	prenyl diphosphate synthase, subunit 2	162					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	protein heterodimerization activity			ovary(2)	2	Breast(9;0.0127)	all_cancers(87;3.63e-05)|Acute lymphoblastic leukemia(125;2.86e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.0108)|Colorectal(196;0.156)|Lung NSC(302;0.211)	BRCA - Breast invasive adenocarcinoma(8;0.0101)|all cancers(7;0.243)	BRCA - Breast invasive adenocarcinoma(108;0.112)|OV - Ovarian serous cystadenocarcinoma(136;0.173)|all cancers(137;0.191)		ATCCCACGATGTACAAGGAGA	0.348			NA											11	21					0	0	0.008291	0	0
SCML4	256380	broad.mit.edu	37	6	108070974	108070974	+	Missense_Mutation	SNP	G	G	T	rs112676572		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:108070974G>T	uc010kdf.2	-	3	451	c.200C>A	c.(199-201)CCG>CAG	p.P67Q	SCML4_uc003prz.3_Missense_Mutation_p.P9Q|SCML4_uc011eam.1_Missense_Mutation_p.P67Q|SCML4_uc003psa.3_Missense_Mutation_p.P38Q	NM_198081	NP_932347	Q8N228	SCML4_HUMAN	sex comb on midleg-like 4	67					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		all_cancers(87;3.26e-06)|Acute lymphoblastic leukemia(125;3.08e-08)|all_hematologic(75;1.15e-06)|all_epithelial(87;0.00142)|Colorectal(196;0.0316)		BRCA - Breast invasive adenocarcinoma(108;0.01)|Epithelial(106;0.0509)|all cancers(137;0.0586)|OV - Ovarian serous cystadenocarcinoma(136;0.0758)		GGTACTCCGCGGAGGTGAGAG	0.582			NA											9	30					1.76689e-08	2.52626e-08	0.006214	1	0
SEC63	11231	broad.mit.edu	37	6	108214792	108214792	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:108214792G>C	uc003psc.3	-	16	1837	c.1568C>G	c.(1567-1569)ACT>AGT	p.T523S	SEC63_uc003psb.3_Missense_Mutation_p.T383S	NM_007214	NP_009145	Q9UGP8	SEC63_HUMAN	SEC63-like protein	523	SEC63 1.|Cytoplasmic (Potential).				protein folding|protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	heat shock protein binding|receptor activity|unfolded protein binding			ovary(1)|skin(1)	2		all_cancers(87;5.35e-06)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.00225)|Colorectal(196;0.0294)		BRCA - Breast invasive adenocarcinoma(108;0.0079)|Epithelial(106;0.0356)|all cancers(137;0.0525)|OV - Ovarian serous cystadenocarcinoma(136;0.054)		TGATTTAGCAGTTTTCTTGGG	0.378			NA											16	106					0	0	0.003163	0	0
ARMC2	84071	broad.mit.edu	37	6	109274530	109274530	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:109274530G>T	uc003pss.3	+	13	2065	c.1891G>T	c.(1891-1893)GTG>TTG	p.V631L	ARMC2_uc011eao.1_Missense_Mutation_p.V466L	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	631	ARM 9.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		CCCGGGGATAGTGGGCCTGCT	0.642			NA											6	19					5.18039e-06	6.58689e-06	0.00308	1	0
ZBTB24	9841	broad.mit.edu	37	6	109787142	109787142	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:109787142T>C	uc003ptl.1	-	7	2174	c.2006A>G	c.(2005-2007)CAG>CGG	p.Q669R	MICAL1_uc011eaq.1_5'UTR|ZBTB24_uc011ear.1_RNA|ZBTB24_uc010kds.1_Missense_Mutation_p.Q613R|ZBTB24_uc010kdt.1_RNA	NM_014797	NP_055612	O43167	ZBT24_HUMAN	zinc finger and BTB domain containing 24 isoform	669					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0154)|all cancers(137;0.0216)|OV - Ovarian serous cystadenocarcinoma(136;0.0242)|BRCA - Breast invasive adenocarcinoma(108;0.059)		CTGCAGGTGCTGAGCTGGATC	0.557			NA											12	49					0	0	0.001368	0	0
GSTM2P1	442245	broad.mit.edu	37	6	111368114	111368114	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:111368114A>T	uc003puq.2	-	1	644	c.509T>A	c.(508-510)CTG>CAG	p.L170Q		NR_002932				Homo sapiens chromosome 1 truncated glutathione S-transferase M1 mRNA, complete cds.												0						CACAGGTCTCAGGAGGAAGCA	0.547			NA											33	38					0	0	0.010818	0	0
FYN	2534	broad.mit.edu	37	6	111983136	111983136	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:111983136C>A	uc003pvj.2	-	13	1760	c.1420G>T	c.(1420-1422)GAG>TAG	p.E474*	FYN_uc003pvi.2_Nonsense_Mutation_p.E419*|FYN_uc003pvk.2_Nonsense_Mutation_p.E474*|FYN_uc003pvh.2_Nonsense_Mutation_p.E471*	NM_002037	NP_002028	P06241	FYN_HUMAN	protein-tyrosine kinase fyn isoform a	474	Protein kinase.				axon guidance|calcium ion transport|feeding behavior|interspecies interaction between organisms|intracellular protein kinase cascade|learning|leukocyte migration|platelet activation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|viral reproduction	cytosol|endosome|plasma membrane	ATP binding|glycoprotein binding|identical protein binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity			lung(5)|central_nervous_system(1)|skin(1)	7		all_cancers(87;1.37e-05)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|all_epithelial(87;0.00125)|Colorectal(196;0.0211)		all cancers(137;0.0451)|OV - Ovarian serous cystadenocarcinoma(136;0.0476)|Epithelial(106;0.102)	Dasatinib(DB01254)	TCCAGCACCTCCCGGTTGTTC	0.607			NA											13	75					0.00136819	0.00151231	0.001368	1	0
LAMA4	3910	broad.mit.edu	37	6	112462121	112462121	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:112462121C>A	uc003pvu.2	-	22	3126	c.2817G>T	c.(2815-2817)GTG>GTT	p.V939V	LAMA4_uc003pvv.2_Silent_p.V932V|LAMA4_uc003pvt.2_Silent_p.V932V	NM_001105206	NP_001098676	Q16363	LAMA4_HUMAN	laminin, alpha 4 isoform 1 precursor	939	Laminin G-like 1.				cell adhesion|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	extracellular matrix structural constituent|receptor binding			ovary(4)|breast(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	9		all_cancers(87;0.000196)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0335)|OV - Ovarian serous cystadenocarcinoma(136;0.0578)|Epithelial(106;0.0748)|BRCA - Breast invasive adenocarcinoma(108;0.242)		CATGTTTTCCCACCCTATTGA	0.343			NA											13	35					0.00136819	0.00151231	0.001368	1	0
GPRC6A	222545	broad.mit.edu	37	6	117113850	117113850	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:117113850C>A	uc003pxj.1	-	6	2258	c.2236G>T	c.(2236-2238)GAG>TAG	p.E746*	GPRC6A_uc003pxk.1_Nonsense_Mutation_p.E571*|GPRC6A_uc003pxl.1_Nonsense_Mutation_p.E675*	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	746	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		ATGGATCCCTCCTCACACTCC	0.468			NA											9	11					1.76689e-08	2.52626e-08	0.006214	1	0
ASF1A	25842	broad.mit.edu	37	6	119222019	119222019	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:119222019C>A	uc011ebn.1	+	2	535	c.198C>A	c.(196-198)CCC>CCA	p.P66P		NM_014034	NP_054753	Q9Y294	ASF1A_HUMAN	ASF1 anti-silencing function 1 homolog A	66	Interaction with histone H3, CHAF1B, and HIRA.				chromatin modification|DNA repair|loss of chromatin silencing|nucleosome assembly|transcription, DNA-dependent	chromatin remodeling complex	chromatin binding|histone binding				0		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0633)|OV - Ovarian serous cystadenocarcinoma(136;0.188)		GTCCTGTTCCCGCAGGAAGGC	0.348			NA											28	108					4.74835e-14	8.05609e-14	0.010818	1	0
C6orf170	221322	broad.mit.edu	37	6	121638700	121638701	+	Nonsense_Mutation	DNP	CC	CC	AA			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CC	CC	-	-	CC	CC	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:121638700_121638701CC>AA	uc003pyo.1	-	3	503_504	c.435_436GG>TT	c.(433-438)AAGGAG>AATTAG	p.145_146KE>N*	C6orf170_uc003pyq.1_RNA	NM_152730	NP_689943	Q96NH3	BROMI_HUMAN	hypothetical protein LOC221322	145_146					multicellular organismal development	cilium|cytoplasm	Rab GTPase activator activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(226;0.00521)		TGGCTTTTCTCCTTTTGGATTT	0.361			NA											5	54					0	0	0.004672	0	0
LAMA2	3908	broad.mit.edu	37	6	129486760	129486760	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:129486760T>A	uc003qbn.2	+	9	1351	c.1246T>A	c.(1246-1248)TGC>AGC	p.C416S	LAMA2_uc003qbo.2_Missense_Mutation_p.C416S	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	416	Laminin EGF-like 3.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		GCCATGTCATTGCGATCCAAT	0.383			NA											5	22					0	0	0.001168	0	0
LAMA2	3908	broad.mit.edu	37	6	129634139	129634139	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:129634139G>T	uc003qbn.2	+	23	3413	c.3308G>T	c.(3307-3309)TGC>TTC	p.C1103F	LAMA2_uc003qbo.2_Missense_Mutation_p.C1103F	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1103	Laminin EGF-like 12.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TACCCTCGCTGCAATCTCTGT	0.468			NA											15	54					1.3612e-06	1.79244e-06	0.003163	1	0
SAMD3	154075	broad.mit.edu	37	6	130505706	130505706	+	Nonsense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:130505706A>T	uc003qbv.2	-	7	772	c.446T>A	c.(445-447)TTA>TAA	p.L149*	SAMD3_uc003qbx.2_Nonsense_Mutation_p.L149*|SAMD3_uc003qbw.2_Nonsense_Mutation_p.L149*|SAMD3_uc010kfg.1_Nonsense_Mutation_p.L149*|SAMD3_uc003qby.2_Nonsense_Mutation_p.L149*|SAMD3_uc003qbz.1_Nonsense_Mutation_p.L108*	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	149										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		AAACTCTGGTAAAACATAGGA	0.398			NA											6	30					0	0	0.001984	0	0
TAAR1	134864	broad.mit.edu	37	6	132966951	132966951	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:132966951G>T	uc003qdm.1	-	1	192	c.192C>A	c.(190-192)TCC>TCA	p.S64S		NM_138327	NP_612200	Q96RJ0	TAAR1_HUMAN	trace amine associated receptor 1	64	Helical; Name=2; (Potential).					plasma membrane					0	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00616)|GBM - Glioblastoma multiforme(226;0.0154)	Amphetamine(DB00182)	CAGTGGCCATGGAATGAATGA	0.418			NA											12	52					2.80697e-09	4.15305e-09	0.010729	1	0
ALDH8A1	64577	broad.mit.edu	37	6	135239893	135239893	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:135239893G>A	uc003qew.2	-	7	1177	c.1124C>T	c.(1123-1125)CCC>CTC	p.P375L	ALDH8A1_uc003qex.2_Missense_Mutation_p.P321L|ALDH8A1_uc010kgh.2_Missense_Mutation_p.P153L|ALDH8A1_uc011ecx.1_Missense_Mutation_p.P325L	NM_022568	NP_072090	Q9H2A2	AL8A1_HUMAN	aldehyde dehydrogenase 8A1 isoform 1	375					retinal metabolic process	cytoplasm	retinal dehydrogenase activity			ovary(2)|pancreas(1)|skin(1)	4	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.00401)|GBM - Glioblastoma multiforme(68;0.0058)		TATCACCGTGGGAAGCATAAA	0.512			NA											22	75					0	0	0.010504	0	0
BCLAF1	9774	broad.mit.edu	37	6	136589325	136589325	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:136589325C>A	uc003qgx.1	-	10	2625	c.2372G>T	c.(2371-2373)GGA>GTA	p.G791V	BCLAF1_uc011edb.1_Missense_Mutation_p.G119V|BCLAF1_uc003qgw.1_Missense_Mutation_p.G618V|BCLAF1_uc003qgy.1_Missense_Mutation_p.G789V|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.G789V	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	791					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TCGGCTAACTCCTGCAAAGCC	0.378	Colon(142;1534 1789 5427 7063 28491)		NA											9	99					1.3612e-06	1.79244e-06	0.003163	1	0
BCLAF1	9774	broad.mit.edu	37	6	136597197	136597197	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:136597197G>C	uc003qgx.1	-	5	1719	c.1466C>G	c.(1465-1467)ACA>AGA	p.T489R	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.T487R|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.T487R	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	489					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TTTCTTTACTGTTATTCTTTC	0.368	Colon(142;1534 1789 5427 7063 28491)		NA											14	106					0	0	0.001855	0	0
BCLAF1	9774	broad.mit.edu	37	6	136597469	136597469	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:136597469T>A	uc003qgx.1	-	5	1447	c.1194A>T	c.(1192-1194)GAA>GAT	p.E398D	BCLAF1_uc003qgw.1_Intron|BCLAF1_uc003qgy.1_Missense_Mutation_p.E396D|BCLAF1_uc011edc.1_Intron|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.E396D	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	398					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		TGTCATCCCCTTCTGAATCAT	0.443	Colon(142;1534 1789 5427 7063 28491)		NA											37	230					0	0	0.007835	0	0
IL22RA2	116379	broad.mit.edu	37	6	137468906	137468906	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:137468906A>T	uc003qhl.2	-	6	896	c.595T>A	c.(595-597)TAT>AAT	p.Y199N	IL22RA2_uc003qhm.2_Missense_Mutation_p.Y167N|IL22RA2_uc003qhn.2_Intron	NM_052962	NP_443194	Q969J5	I22R2_HUMAN	interleukin 22-binding protein isoform 1	199	Fibronectin type-III 3.				regulation of tyrosine phosphorylation of Stat3 protein	extracellular space	interleukin-22 receptor activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000313)|OV - Ovarian serous cystadenocarcinoma(155;0.00407)		AGTAGTTCATAGTAATCTTCT	0.274			NA											10	55					0	0	0.006214	0	0
GPR126	57211	broad.mit.edu	37	6	142741181	142741181	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:142741181G>T	uc010khc.2	+	22	3670	c.3259G>T	c.(3259-3261)GCC>TCC	p.A1087S	GPR126_uc010khd.2_Missense_Mutation_p.A1059S|GPR126_uc010khe.2_Missense_Mutation_p.A1087S|GPR126_uc010khf.2_Missense_Mutation_p.A1059S|GPR126_uc011edv.1_Missense_Mutation_p.A147S	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	1087	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		TGCATTCTTTGCCTGGGGACC	0.433			NA											23	103					3.8784e-16	6.81829e-16	0.012319	1	0
HIVEP2	3097	broad.mit.edu	37	6	143080981	143080981	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:143080981C>A	uc003qjd.2	-	9	7187	c.6444G>T	c.(6442-6444)AGG>AGT	p.R2148S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	2148	10 X 4 AA tandem repeats of S-P-[RGMKC]- [RK].|10.|Arg-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		GGTATAAAGCCCTTCTGGGAG	0.453	Esophageal Squamous(107;843 1510 13293 16805 42198)		NA											21	26					5.26018e-13	8.69874e-13	0.012319	1	0
LTV1	84946	broad.mit.edu	37	6	144179062	144179062	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:144179062G>A	uc003qjs.2	+	6	820	c.713G>A	c.(712-714)AGT>AAT	p.S238N	LTV1_uc003qju.1_Missense_Mutation_p.S23N|C6orf94_uc010khj.2_5'UTR	NM_032860	NP_116249	Q96GA3	LTV1_HUMAN	LTV1 homolog	238										ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(155;2.72e-06)|GBM - Glioblastoma multiforme(68;0.0372)		GAAACAAAGAGTCGCTTCACG	0.468			NA											4	29					0	0	0.009096	0	0
FBXO30	84085	broad.mit.edu	37	6	146126176	146126176	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:146126176C>A	uc003qla.2	-	2	1565	c.1366G>T	c.(1366-1368)GTT>TTT	p.V456F	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	456							ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		TGAGTCCCAACGTCAATGTGA	0.433			NA											11	76					3.07112e-06	3.94924e-06	0.010729	1	0
SHPRH	257218	broad.mit.edu	37	6	146271525	146271525	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:146271525T>G	uc003qlf.2	-	4	1256	c.857A>C	c.(856-858)CAA>CCA	p.Q286P	SHPRH_uc003qld.2_Missense_Mutation_p.Q286P|SHPRH_uc003qle.2_Missense_Mutation_p.Q286P|SHPRH_uc003qlg.1_5'UTR|SHPRH_uc003qlj.1_Missense_Mutation_p.Q175P|SHPRH_uc003qlk.1_Missense_Mutation_p.Q286P	NM_001042683	NP_001036148	Q149N8	SHPRH_HUMAN	SNF2 histone linker PHD RING helicase isoform a	286					DNA repair|nucleosome assembly	nucleosome|nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)|kidney(1)|central_nervous_system(1)	3		Ovarian(120;0.0365)		OV - Ovarian serous cystadenocarcinoma(155;1.47e-07)|GBM - Glioblastoma multiforme(68;0.0124)		CTGCGTTTCTTGCTGATGTGT	0.473			NA											29	80					0	0	0.007291	0	0
GRM1	2911	broad.mit.edu	37	6	146351134	146351134	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:146351134G>T	uc010khw.1	+	2	951	c.481G>T	c.(481-483)GGT>TGT	p.G161C	GRM1_uc010khu.1_Missense_Mutation_p.G161C|GRM1_uc010khv.1_Missense_Mutation_p.G161C|GRM1_uc003qll.2_Missense_Mutation_p.G161C|GRM1_uc011edz.1_Missense_Mutation_p.G161C|GRM1_uc011eea.1_Missense_Mutation_p.G161C	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	161	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GGGAGTGATCGGTCCCGGCTC	0.572			NA											19	30					1.01871e-10	1.57581e-10	0.008871	1	0
GRM1	2911	broad.mit.edu	37	6	146480667	146480667	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:146480667C>A	uc010khw.1	+	3	1354	c.884C>A	c.(883-885)ACA>AAA	p.T295K	GRM1_uc010khu.1_Missense_Mutation_p.T295K|GRM1_uc010khv.1_Missense_Mutation_p.T295K|GRM1_uc003qll.2_Missense_Mutation_p.T295K|GRM1_uc011edz.1_Missense_Mutation_p.T295K|GRM1_uc011eea.1_Missense_Mutation_p.T295K	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	295	Extracellular (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	GAAGGCATGACAGTGCGAGGA	0.498			NA											24	37					6.12954e-19	1.11446e-18	0.004656	1	0
GRM1	2911	broad.mit.edu	37	6	146720058	146720058	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:146720058G>T	uc010khw.1	+	8	2353	c.1883G>T	c.(1882-1884)CGG>CTG	p.R628L	GRM1_uc010khv.1_Missense_Mutation_p.R628L|GRM1_uc003qll.2_Missense_Mutation_p.R628L|GRM1_uc011edz.1_Missense_Mutation_p.R628L|GRM1_uc011eea.1_Missense_Mutation_p.R628L	NM_000838	NP_000829	Q13255	GRM1_HUMAN	glutamate receptor, metabotropic 1 isoform alpha	628	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			lung(8)|ovary(4)|central_nervous_system(3)|large_intestine(2)|breast(2)	19		Ovarian(120;0.0387)		OV - Ovarian serous cystadenocarcinoma(155;5.35e-08)|GBM - Glioblastoma multiforme(68;0.00762)	Acamprosate(DB00659)|L-Glutamic Acid(DB00142)	TCCTCCAGTCGGGAGCTCTGC	0.507			NA											36	110					1.22384e-17	2.19464e-17	0.002836	1	0
STXBP5	134957	broad.mit.edu	37	6	147685201	147685201	+	Silent	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:147685201A>C	uc003qlz.2	+	25	3141	c.2980A>C	c.(2980-2982)AGA>CGA	p.R994R	STXBP5_uc010khz.1_Silent_p.R958R|STXBP5_uc003qlx.2_RNA|STXBP5_uc003qly.2_Silent_p.R649R	NM_001127715	NP_001121187	Q5T5C0	STXB5_HUMAN	syntaxin binding protein 5 (tomosyn) isoform b	994					exocytosis|positive regulation of exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|nicotinic acetylcholine-gated receptor-channel complex|synaptic vesicle	syntaxin-1 binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.77e-09)|GBM - Glioblastoma multiforme(68;0.0694)		GCGGATAGCCAGAACGTTCTG	0.363			NA											13	74					0	0	0.004007	0	0
SYNE1	23345	broad.mit.edu	37	6	152668215	152668215	+	Silent	SNP	C	C	A	rs144596829	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:152668215C>A	uc010kiw.2	-	73	12659	c.12057G>T	c.(12055-12057)GCG>GCT	p.A4019A	SYNE1_uc003qot.3_Silent_p.A3948A|SYNE1_uc003qou.3_Silent_p.A4019A|SYNE1_uc010kja.1_Silent_p.A724A	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	4019	Spectrin 10.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TGCTGCAGATCGCTGAGTAGC	0.488			NA								HNSCC(10;0.0054)			9	26					0.000673444	0.00075369	0.008291	1	0
NOX3	50508	broad.mit.edu	37	6	155750056	155750056	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:155750056G>T	uc003qqm.2	-	9	1120	c.1017C>A	c.(1015-1017)ACC>ACA	p.T339T		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	339	Extracellular (Potential).|FAD-binding FR-type.						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		CAGAGGTAAGGGTGAAGGGGT	0.582			NA											11	60					6.40141e-05	7.65288e-05	0.010729	1	0
FNDC1	84624	broad.mit.edu	37	6	159654268	159654268	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:159654268C>G	uc010kjv.2	+	11	2924	c.2724C>G	c.(2722-2724)GAC>GAG	p.D908E	FNDC1_uc010kjw.1_Missense_Mutation_p.D793E	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	908						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		GCTGGGAGGACTTAAGGAGAA	0.607			NA											16	11					0	0	0.003163	0	0
MAP3K4	4216	broad.mit.edu	37	6	161470144	161470144	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:161470144G>T	uc003qtn.2	+	3	982	c.840G>T	c.(838-840)CAG>CAT	p.Q280H	MAP3K4_uc010kkc.1_Missense_Mutation_p.Q280H|MAP3K4_uc003qto.2_Missense_Mutation_p.Q280H|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Translation_Start_Site	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	280					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		TTAACGACCAGGACTTCTTTT	0.428			NA											4	34					2.56e-06	3.32214e-06	0.009096	1	0
AGPAT4	56895	broad.mit.edu	37	6	161560499	161560499	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:161560499C>T	uc003qtr.1	-	8	1224	c.997G>A	c.(997-999)GGG>AGG	p.G333R	AGPAT4_uc003qts.1_Missense_Mutation_p.G193R|AGPAT4_uc011egb.1_Missense_Mutation_p.G171R	NM_020133	NP_064518	Q9NRZ5	PLCD_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 4	333					phospholipid biosynthetic process	integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity|protein binding				0		Breast(66;0.000289)|Ovarian(120;0.0266)|Prostate(117;0.0285)		OV - Ovarian serous cystadenocarcinoma(65;2.23e-17)|BRCA - Breast invasive adenocarcinoma(81;3.58e-05)		AGGGAAGACCCGCTCCTGATC	0.637			NA											25	95					0	0	0.00333	0	0
C6orf118	168090	broad.mit.edu	37	6	165715190	165715190	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:165715190G>T	uc003qum.3	-	2	657	c.621C>A	c.(619-621)GCC>GCA	p.A207A	C6orf118_uc011egi.1_RNA	NM_144980	NP_659417	Q5T5N4	CF118_HUMAN	hypothetical protein LOC168090	207											0		Breast(66;6.27e-05)|Ovarian(120;0.0228)|Prostate(117;0.0906)|all_neural(5;0.157)		OV - Ovarian serous cystadenocarcinoma(33;3.23e-18)|BRCA - Breast invasive adenocarcinoma(81;3.11e-06)|GBM - Glioblastoma multiforme(31;0.000313)		TGGTGGCTCCGGCCAGGTAGG	0.602			NA											12	49					1.08611e-07	1.49384e-07	0.010729	1	0
TCP10L2	401285	broad.mit.edu	37	6	167592025	167592025	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:167592025G>C	uc010kkp.2	+	5	783	c.652G>C	c.(652-654)GGA>CGA	p.G218R		NM_001145121	NP_001138593	B9ZVM9	B9ZVM9_HUMAN	t-complex 10-like 2	218											0						GTCTGAAGACGGAAAGGTGAC	0.507			NA											7	90					0	0	0.006214	0	0
HEATR2	54919	broad.mit.edu	37	7	803466	803466	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:803466G>T	uc010krz.1	+	8	1658	c.1638G>T	c.(1636-1638)CTG>CTT	p.L546L	HEATR2_uc003siz.2_Silent_p.L414L|HEATR2_uc003sja.2_Silent_p.L4L	NM_017802	NP_060272	Q86Y56	HEAT2_HUMAN	HEAT repeat containing 2	546							protein binding			skin(1)	1		Ovarian(82;0.0112)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0182)|Epithelial(4;5.48e-17)|OV - Ovarian serous cystadenocarcinoma(56;1.95e-16)|all cancers(6;2.98e-14)		TGGACTCACTGGCCATGGTGG	0.602			NA											13	78					1.05317e-09	1.57466e-09	0.00245	1	0
EIF3B	8662	broad.mit.edu	37	7	2416670	2416670	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:2416670G>T	uc003slx.2	+	15	2197	c.2114G>T	c.(2113-2115)CGG>CTG	p.R705L	EIF3B_uc003sly.2_Missense_Mutation_p.R705L|EIF3B_uc003sma.2_Missense_Mutation_p.R433L|EIF3B_uc003smb.2_RNA	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	705					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		CTGCTGTGGCGGCCCCGGCCT	0.632			NA											8	25					1.12685e-05	1.40753e-05	0.004482	1	0
EIF3B	8662	broad.mit.edu	37	7	2418366	2418366	+	Nonsense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:2418366C>T	uc003slx.2	+	16	2280	c.2197C>T	c.(2197-2199)CAG>TAG	p.Q733*	EIF3B_uc003sly.2_Nonsense_Mutation_p.Q733*|EIF3B_uc003sma.2_Nonsense_Mutation_p.Q461*|EIF3B_uc003smb.2_RNA	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	733					regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		GATCTTTGAACAGAAGGATCG	0.438			NA											11	11					0	0	0.008291	0	0
CHST12	55501	broad.mit.edu	37	7	2473087	2473087	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:2473087C>T	uc003smc.2	+	2	948	c.813C>T	c.(811-813)GCC>GCT	p.A271A	CHST12_uc003smd.2_Silent_p.A271A	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	271	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		GCAAGTTCGCCGTGCCCATGC	0.647			NA											19	68					0	0	0.007413	0	0
SDK1	221935	broad.mit.edu	37	7	4249736	4249736	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:4249736G>T	uc003smx.2	+	38	5620	c.5481G>T	c.(5479-5481)GCG>GCT	p.A1827A	SDK1_uc010kso.2_Silent_p.A1083A|SDK1_uc003smy.2_Silent_p.A314A	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1827	Fibronectin type-III 12.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGCCTGCGGCGGCCAACGGCA	0.637			NA											26	51					3.01185e-09	4.44843e-09	0.003954	1	0
RSPH10B2	728194	broad.mit.edu	37	7	5966163	5966163	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:5966163A>G	uc003sph.1	-	21	2720	c.2449T>C	c.(2449-2451)TTG>CTG	p.L817L	RSPH10B2_uc003spg.1_3'UTR|RSPH10B2_uc010ktd.1_Silent_p.L817L	NM_173565	NP_775836	B2RC85	R10B2_HUMAN	radial spoke head 10 homolog B	817										ovary(1)|pancreas(1)|skin(1)	3						TCCTCTCTCAAGATGAAGATG	0.463			NA											30	123					0	0	0.002836	0	0
CYTH3	9265	broad.mit.edu	37	7	6217528	6217528	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:6217528T>A	uc003spt.2	-	5	398	c.294A>T	c.(292-294)CCA>CCT	p.P98P		NM_004227	NP_004218	O43739	CYH3_HUMAN	cytohesin 3	98	SEC7.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|membrane fraction|plasma membrane	1-phosphatidylinositol binding|ARF guanyl-nucleotide exchange factor activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity				0						CGACGTCTTCTGGGGAACTCT	0.443			NA											43	52					0	0	0.00874	0	0
C7orf26	79034	broad.mit.edu	37	7	6639514	6639514	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:6639514A>T	uc003sqo.1	+	4	635	c.635A>T	c.(634-636)GAG>GTG	p.E212V	C7orf26_uc003sqp.1_Missense_Mutation_p.E193V|C7orf26_uc003sqq.1_Missense_Mutation_p.E13V	NM_024067	NP_076972	Q96N11	CG026_HUMAN	hypothetical protein LOC79034	212										ovary(1)	1		Ovarian(82;0.232)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)		TGGATTTTTGAGGACCCAAGG	0.468			NA											72	104					0	0	0.00361	0	0
DGKB	1607	broad.mit.edu	37	7	14775792	14775792	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:14775792A>G	uc003ssz.2	-	4	383	c.196T>C	c.(196-198)TTC>CTC	p.F66L	DGKB_uc011jxt.1_Missense_Mutation_p.F59L|DGKB_uc003sta.2_Missense_Mutation_p.F66L|DGKB_uc011jxu.1_Missense_Mutation_p.F66L|DGKB_uc011jxv.1_Missense_Mutation_p.F66L	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	66					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	GTCTTCATGAATAGTTTGAAA	0.338			NA											3	18					0	0	0.009096	0	0
FERD3L	222894	broad.mit.edu	37	7	19184587	19184587	+	Nonsense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:19184587G>C	uc003suo.1	-	1	458	c.399C>G	c.(397-399)TAC>TAG	p.Y133*	uc003sun.1_RNA	NM_152898	NP_690862	Q96RJ6	FER3L_HUMAN	nephew of atonal 3	133	Helix-loop-helix motif.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			large_intestine(1)	1						GCCTTTTCTCGTAAGCAAACG	0.587			NA											7	32					0	0	0.00308	0	0
DNAH11	8701	broad.mit.edu	37	7	21723444	21723444	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:21723444C>G	uc003svc.2	+	33	5555	c.5524C>G	c.(5524-5526)CAC>GAC	p.H1842D		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	1842	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TCAACTTCGTCACCGATGGGA	0.443			NA							Kartagener_syndrome				17	155					0	0	0.004007	0	0
CCDC126	90693	broad.mit.edu	37	7	23651099	23651099	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:23651099A>T	uc003swl.2	+	3	622	c.165A>T	c.(163-165)AGA>AGT	p.R55S	CCDC126_uc003swm.2_Missense_Mutation_p.R55S|CCDC126_uc003swn.2_Missense_Mutation_p.R55S	NM_138771	NP_620126	Q96EE4	CC126_HUMAN	coiled-coil domain containing 126 precursor	55						extracellular region				ovary(1)|skin(1)	2						TAAGCAAAAGATATGTTAAAG	0.383			NA											11	30					0	0	0.010729	0	0
HOXA1	3198	broad.mit.edu	37	7	27135176	27135176	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:27135176A>T	uc003sye.2	-	1	450	c.356T>A	c.(355-357)GTA>GAA	p.V119E	HOXA1_uc003syd.2_Intron|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	119						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						CCCACCACTTACGTCTGCTTC	0.567			NA											36	24					0	0	0.004289	0	0
WIPF3	644150	broad.mit.edu	37	7	29915475	29915475	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:29915475G>A	uc003taj.1	+	2	120	c.120G>A	c.(118-120)AGG>AGA	p.R40R		NM_001080529	NP_001073998	A6NGB9	WIPF3_HUMAN	WAS/WASL interacting protein family, member 3	40										ovary(1)	1						GCTTGCGAAGGGCAGATCCGA	0.527			NA											5	42					0	0	0.000602	0	0
FAM188B	84182	broad.mit.edu	37	7	30825406	30825406	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:30825406C>T	uc003tbt.2	+	4	538	c.461C>T	c.(460-462)TCA>TTA	p.S154L	FAM188B_uc010kwe.2_Missense_Mutation_p.S125L	NM_032222	NP_115598	Q4G0A6	F188B_HUMAN	hypothetical protein LOC84182	154											0						AATTTTGTATCATCTAAAAGG	0.428			NA											16	75					0	0	0.003163	0	0
ELMO1	9844	broad.mit.edu	37	7	37354510	37354510	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:37354510G>T	uc003tfk.1	-	4	443	c.136C>A	c.(136-138)CAT>AAT	p.H46N	ELMO1_uc010kxg.1_Missense_Mutation_p.H46N	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	46					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						AAATATTCATGGTTGGCAAGA	0.328			NA											10	6					7.48243e-07	9.9376e-07	0.006214	1	0
INHBA	3624	broad.mit.edu	37	7	41739856	41739856	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:41739856C>T	uc003thq.2	-	1	352	c.117G>A	c.(115-117)GCG>GCA	p.A39A	LOC285954_uc003tht.3_Intron|INHBA_uc003thr.2_Silent_p.A39A|LOC285954_uc003ths.2_Intron	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	39					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						GGGCGGCCAGCGCACAGGACG	0.577			NA								TSP Lung(11;0.080)			105	129					0	0	0.00361	0	0
AEBP1	165	broad.mit.edu	37	7	44146316	44146316	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:44146316C>T	uc003tkb.2	+	2	730	c.425C>T	c.(424-426)CCC>CTC	p.P142L		NM_001129	NP_001120	Q8IUX7	AEBP1_HUMAN	adipocyte enhancer binding protein 1 precursor	142	Pro-rich.				cell adhesion|muscle organ development|proteolysis|skeletal system development	cytoplasm|extracellular space|nucleus	DNA binding|metallocarboxypeptidase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACCAAGAAGCCCAAGGAGAAG	0.632			NA											5	29					0	0	0.000602	0	0
OGDH	4967	broad.mit.edu	37	7	44664004	44664004	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:44664004A>C	uc003tln.2	+	2	171	c.62A>C	c.(61-63)AAG>ACG	p.K21T	OGDH_uc003tlm.2_Missense_Mutation_p.K21T|OGDH_uc011kbx.1_Missense_Mutation_p.K21T|OGDH_uc011kby.1_Missense_Mutation_p.K21T|OGDH_uc003tlp.2_Missense_Mutation_p.K21T|OGDH_uc011kbz.1_5'UTR	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	21					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	CAGACTGTTAAGACATTTTCA	0.438			NA											77	36					0	0	0.00361	0	0
TNS3	64759	broad.mit.edu	37	7	47467916	47467916	+	Nonsense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:47467916G>C	uc003tnv.2	-	9	750	c.383C>G	c.(382-384)TCA>TGA	p.S128*	TNS3_uc003tnw.2_Nonsense_Mutation_p.S128*|TNS3_uc010kyo.1_Nonsense_Mutation_p.S128*	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	128	Phosphatase tensin-type.					focal adhesion	protein binding			ovary(4)	4						CTACCTGGCTGAGACGTTGGT	0.527			NA											9	28					0	0	0.004482	0	0
PKD1L1	168507	broad.mit.edu	37	7	47933617	47933617	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:47933617C>A	uc003tny.1	-	15	2311	c.2311G>T	c.(2311-2313)GTG>TTG	p.V771L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	771	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCCAGGCCCACACAGTAGTTG	0.587			NA											29	11					1.06647e-15	1.86523e-15	0.003755	1	0
VWC2	375567	broad.mit.edu	37	7	49842402	49842402	+	Nonsense_Mutation	SNP	C	C	A	rs147623371		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:49842402C>A	uc003tot.1	+	3	1348	c.792C>A	c.(790-792)TAC>TAA	p.Y264*		NM_198570	NP_940972	Q2TAL6	VWC2_HUMAN	von Willebrand factor C domain containing 2	264	VWFC 2.				negative regulation of BMP signaling pathway|positive regulation of neuron differentiation	basement membrane|extracellular space					0						ACCCTGTGTACGAGCCTGATC	0.572			NA											10	74					4.68919e-08	6.60997e-08	0.008291	1	0
EGFR	1956	broad.mit.edu	37	7	55266471	55266471	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:55266471C>A	uc003tqk.2	+	23	3009	c.2763C>A	c.(2761-2763)AGC>AGA	p.S921R	EGFR_uc010kzg.1_Missense_Mutation_p.S876R|EGFR_uc011kco.1_Missense_Mutation_p.S868R	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	921	Cytoplasmic (Potential).|Protein kinase.				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.S921R(1)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TCCCTGCCAGCGAGATCTCCT	0.512			8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			14	94					7.93312e-07	1.05115e-06	0.00245	1	0
FKBP9L	360132	broad.mit.edu	37	7	55755566	55755566	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:55755566C>G	uc010kzl.2	-	4	427	c.327G>C	c.(325-327)GTG>GTC	p.V109V	FKBP9L_uc010kzk.2_5'UTR|FKBP9L_uc003tqt.2_5'UTR|FKBP9L_uc011kcs.1_5'UTR	NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						CCATCCCCAACACAACTTGCC	0.512			NA											21	84					0	0	0.00278	0	0
FKBP9L	360132	broad.mit.edu	37	7	55766717	55766717	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:55766717C>A	uc010kzl.2	-	2	167	c.67G>T	c.(67-69)GGG>TGG	p.G23W		NR_003949				SubName: Full=cDNA, FLJ79189, highly similar to FK506-binding protein 9 (EC 5.2.1.8);												0						TCTCCATACCCCAGGTGAGGG	0.517			NA											12	16					1.08611e-07	1.49384e-07	0.010729	1	0
ZNF716	441234	broad.mit.edu	37	7	57528796	57528796	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:57528796A>T	uc011kdi.1	+	4	741	c.629A>T	c.(628-630)GAG>GTG	p.E210V		NM_001159279	NP_001152751			zinc finger protein 716											ovary(2)	2						CATACTAGGGAGAAGTCTTAC	0.353			NA											10	11					0	0	0.006214	0	0
ZNF679	168417	broad.mit.edu	37	7	63727040	63727040	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:63727040G>T	uc003tsx.2	+	5	1298	c.1029G>T	c.(1027-1029)AAG>AAT	p.K343N		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	343	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						AGAAACATAAGATAATTCATA	0.403			NA											8	19					0.000157383	0.000182879	0.00308	1	0
ZNF273	10793	broad.mit.edu	37	7	64388439	64388439	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:64388439C>A	uc003tto.2	+	4	809	c.733C>A	c.(733-735)CAG>AAG	p.Q245K	ZNF273_uc003ttl.2_Missense_Mutation_p.Q180K|ZNF273_uc003ttn.2_Missense_Mutation_p.Q180K	NM_021148	NP_066971	Q14593	ZN273_HUMAN	zinc finger protein 273	245	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(55;0.0295)|all_lung(88;0.0691)				AGCCTTTAACCAGTTCTCAAA	0.353	Ovarian(154;605 895 6696 7659 15316 19321 21716 23848 32322 36932)		NA											12	73					3.07112e-06	3.94924e-06	0.010729	1	0
WBSCR17	64409	broad.mit.edu	37	7	71135054	71135054	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:71135054C>A	uc003tvy.2	+	8	1364	c.1364C>A	c.(1363-1365)CCA>CAA	p.P455Q	WBSCR17_uc003tvz.2_Missense_Mutation_p.P154Q	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	455	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CATGTTTACCCAGAAATGAGA	0.428			NA											58	128					6.60958e-23	1.24295e-22	0.00361	1	0
NCF1	653361	broad.mit.edu	37	7	74191693	74191693	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:74191693T>A	uc003ubb.2	+	2	223	c.153T>A	c.(151-153)CAT>CAA	p.H51Q	NCF1_uc010lbs.1_Missense_Mutation_p.H51Q|NCF1_uc011kfh.1_Missense_Mutation_p.H51Q	NM_000265	NP_000256	P14598	NCF1_HUMAN	neutrophil cytosolic factor 1	51	PX.				cell communication|cellular defense response|innate immune response|protein targeting to membrane|respiratory burst|superoxide anion generation	cytosol|NADPH oxidase complex|soluble fraction	electron carrier activity|GTP binding|GTPase activity|phosphatidylinositol binding|SH3 domain binding|superoxide-generating NADPH oxidase activity			skin(1)	1						ACGAGTTCCATGTGAGTGTGG	0.587			NA											9	22					0	0	0.008291	0	0
DTX2	113878	broad.mit.edu	37	7	76112351	76112351	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:76112351C>T	uc003uff.3	+	5	1351	c.795C>T	c.(793-795)AAC>AAT	p.N265N	DTX2_uc011kgk.1_Silent_p.N174N|DTX2_uc003ufg.3_Silent_p.N265N|DTX2_uc003ufh.3_Silent_p.N265N|DTX2_uc003ufj.3_Silent_p.N265N	NM_020892	NP_065943	Q86UW9	DTX2_HUMAN	deltex 2 isoform a	265					Notch signaling pathway	cytoplasm|nucleus	protein binding|zinc ion binding			ovary(1)|skin(1)	2						ACACCACCAACGCCTGGGGCG	0.672			NA											12	176					0	0	0.001368	0	0
MAGI2	9863	broad.mit.edu	37	7	79082430	79082430	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:79082430C>G	uc003ugx.2	-	1	461	c.207G>C	c.(205-207)GTG>GTC	p.V69V	MAGI2_uc003ugy.2_Silent_p.V69V|uc010lea.1_5'Flank	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	69	PDZ 1.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GGGTCTCGTTCACCTCCAGCA	0.622			NA											18	48					0	0	0.007413	0	0
MAGI2	9863	broad.mit.edu	37	7	79082635	79082635	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:79082635A>G	uc003ugx.2	-	1	256	c.2T>C	c.(1-3)ATG>ACG	p.M1T	MAGI2_uc003ugy.2_Missense_Mutation_p.M1T|uc010lea.1_5'Flank	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	1						cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GCTTTTGGACATGGCAGTGGG	0.587			NA											11	95					0	0	0.001368	0	0
HGF	3082	broad.mit.edu	37	7	81386553	81386553	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:81386553C>A	uc003uhl.2	-	4	599	c.434G>T	c.(433-435)AGT>ATT	p.S145I	HGF_uc003uhm.2_Missense_Mutation_p.S145I|HGF_uc003uhn.1_Missense_Mutation_p.S145I|HGF_uc003uho.1_Missense_Mutation_p.S145I|HGF_uc003uhp.2_Missense_Mutation_p.S145I	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	145	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TTTGATGCCACTCTTAGTGAT	0.378			NA											22	48					2.98393e-07	4.05166e-07	0.00278	1	0
HGF	3082	broad.mit.edu	37	7	81386583	81386583	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:81386583C>A	uc003uhl.2	-	4	569	c.404G>T	c.(403-405)AGC>ATC	p.S135I	HGF_uc003uhm.2_Missense_Mutation_p.S135I|HGF_uc003uhn.1_Missense_Mutation_p.S135I|HGF_uc003uho.1_Missense_Mutation_p.S135I|HGF_uc003uhp.2_Missense_Mutation_p.S135I	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	135	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TCCCTTGTAGCTGCGTCCTTT	0.363			NA											6	62					1.12685e-05	1.40753e-05	0.004482	1	0
HGF	3082	broad.mit.edu	37	7	81388113	81388113	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:81388113C>A	uc003uhl.2	-	3	427	c.262G>T	c.(262-264)GTT>TTT	p.V88F	HGF_uc003uhm.2_Missense_Mutation_p.V88F|HGF_uc003uhn.1_Missense_Mutation_p.V88F|HGF_uc003uho.1_Missense_Mutation_p.V88F|HGF_uc003uhp.2_Missense_Mutation_p.V88F	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	88	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TTATCAAAAACAAAAGCCCTG	0.338			NA											22	32					9.62636e-23	1.80031e-22	0.002299	1	0
CACNA2D1	781	broad.mit.edu	37	7	81596490	81596490	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:81596490T>A	uc003uhr.1	-	31	2753	c.2497A>T	c.(2497-2499)AGT>TGT	p.S833C	CACNA2D1_uc011kgy.1_Missense_Mutation_p.S45C	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	845	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CTTACGTCACTGTTTCTTTTG	0.303			NA											3	22					0	0	0.009096	0	0
PCLO	27445	broad.mit.edu	37	7	82545187	82545187	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:82545187C>G	uc003uhx.2	-	7	12404	c.12115G>C	c.(12115-12117)GAT>CAT	p.D4039H	PCLO_uc003uhv.2_Missense_Mutation_p.D4039H|PCLO_uc010lec.2_Missense_Mutation_p.D1004H	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3970					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GTATGGTGATCAATATCTGCA	0.403			NA											31	61					0	0	0.007291	0	0
SEMA3E	9723	broad.mit.edu	37	7	83036427	83036427	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:83036427C>A	uc003uhy.1	-	7	1265	c.799G>T	c.(799-801)GGG>TGG	p.G267W		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	267	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				CAGAGTCGCCCGACCCTGGTG	0.393			NA											18	46					1.15919e-05	1.44686e-05	0.008871	1	0
CROT	54677	broad.mit.edu	37	7	87021880	87021880	+	Splice_Site	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:87021880A>T	uc003uit.2	+	15	1671	c.1426_splice	c.e15-2	p.L476_splice	CROT_uc003uiu.2_Splice_Site_p.L504_splice	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase						fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	TTTTTAATACAGCTTCGTGAG	0.343			NA											20	113					0	0	0.010504	0	0
ABCB4	5244	broad.mit.edu	37	7	87037415	87037415	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:87037415A>G	uc003uiv.1	-	25	3293	c.3217T>C	c.(3217-3219)TGT>CGT	p.C1073R	ABCB4_uc003uiw.1_Missense_Mutation_p.C1073R|ABCB4_uc003uix.1_Missense_Mutation_p.C1026R	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1073	ABC transporter 2.|Cytoplasmic (By similarity).|ATP 2 (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CTCTTCCCACAGCCACTGCTG	0.572			NA											26	73					0	0	0.003954	0	0
ADAM22	53616	broad.mit.edu	37	7	87737540	87737540	+	Nonsense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:87737540C>G	uc003ujn.2	+	5	519	c.440C>G	c.(439-441)TCA>TGA	p.S147*	ADAM22_uc003uji.1_Nonsense_Mutation_p.S146*|ADAM22_uc003ujj.1_Nonsense_Mutation_p.S147*|ADAM22_uc003ujk.1_Nonsense_Mutation_p.S147*|ADAM22_uc003ujl.1_Nonsense_Mutation_p.S147*|ADAM22_uc003ujm.2_Nonsense_Mutation_p.S147*|ADAM22_uc003ujo.2_Nonsense_Mutation_p.S147*|ADAM22_uc003ujp.1_Nonsense_Mutation_p.S199*	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	147					cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			AACCCTGACTCATTTGTTGCA	0.363			NA											5	41					0	0	0.001168	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963430	88963430	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:88963430C>A	uc011khi.1	+	4	1672	c.1134C>A	c.(1132-1134)GCC>GCA	p.A378A		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	378						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ATAGTGATGCCAGGATATCTG	0.393			NA								HNSCC(36;0.09)			14	29					6.31663e-08	8.85996e-08	0.003163	1	0
AKAP9	10142	broad.mit.edu	37	7	91631164	91631164	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:91631164G>T	uc003ulg.2	+	8	2158	c.1933G>T	c.(1933-1935)GAA>TAA	p.E645*	AKAP9_uc003ule.2_Nonsense_Mutation_p.E657*|AKAP9_uc003ulf.2_Nonsense_Mutation_p.E645*|AKAP9_uc003uli.2_Nonsense_Mutation_p.E270*	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	657	Glu-rich.|Potential.				G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			GGAAGATTTAGAAATTGAACA	0.333			NA	T	BRAF	papillary thyroid								19	25					5.03518e-11	7.86025e-11	0.007413	1	0
SAMD9	54809	broad.mit.edu	37	7	92732038	92732038	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:92732038G>A	uc003umf.2	-	3	3629	c.3373C>T	c.(3373-3375)CAA>TAA	p.Q1125*	SAMD9_uc003umg.2_Nonsense_Mutation_p.Q1125*	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1125						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TTGTAGACTTGACCCAGTGTA	0.358			NA											40	92					0	0	0.009718	0	0
SAMD9L	219285	broad.mit.edu	37	7	92764098	92764098	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:92764098A>G	uc003umh.1	-	5	2403	c.1187T>C	c.(1186-1188)CTA>CCA	p.L396P	SAMD9L_uc003umj.1_Missense_Mutation_p.L396P|SAMD9L_uc003umi.1_Missense_Mutation_p.L396P|SAMD9L_uc010lfb.1_Missense_Mutation_p.L396P|SAMD9L_uc003umk.1_Missense_Mutation_p.L396P|SAMD9L_uc010lfc.1_Missense_Mutation_p.L396P|SAMD9L_uc010lfd.1_Missense_Mutation_p.L396P|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	396										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			AACCAGCTTTAGTCCTTCACT	0.363			NA											29	142					0	0	0.007291	0	0
COL1A2	1278	broad.mit.edu	37	7	94043556	94043556	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:94043556C>T	uc003ung.1	+	29	2159	c.1688C>T	c.(1687-1689)CCC>CTC	p.P563L	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	563					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	CCCTCAGGTCCCGCTGGTGAA	0.433			NA								HNSCC(75;0.22)			5	36					0	0	0.001984	0	0
COL1A2	1278	broad.mit.edu	37	7	94057735	94057735	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:94057735C>A	uc003ung.1	+	50	4128	c.3657C>A	c.(3655-3657)AGC>AGA	p.S1219R	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	1219	Fibrillar collagen NC1.				axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGTATAGGAGCTCCAAGGACA	0.463			NA								HNSCC(75;0.22)			23	45					9.95505e-16	1.7447e-15	0.002299	1	0
CYP3A43	64816	broad.mit.edu	37	7	99454461	99454461	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:99454461A>T	uc003urx.1	+	9	907	c.804A>T	c.(802-804)CGA>CGT	p.R268R	CYP3A43_uc003ury.1_Silent_p.R268R|CYP3A43_uc003urz.1_Silent_p.R268R|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Silent_p.R158R|CYP3A43_uc003usb.1_Silent_p.R128R	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	268			Missing (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	TCCAGCATCGAGTAGATTTCT	0.428			NA											50	89					0	0	0.00361	0	0
MOSPD3	64598	broad.mit.edu	37	7	100210495	100210495	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:100210495C>A	uc003uvq.2	+	2	283	c.81C>A	c.(79-81)CCC>CCA	p.P27P	MOSPD3_uc003uvr.2_Silent_p.P27P|MOSPD3_uc003uvs.2_Silent_p.P27P|MOSPD3_uc003uvt.2_Silent_p.P27P	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	27						integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					ccccTCCTCCCTTGGGACCCG	0.557			NA											21	50					3.51602e-12	5.67099e-12	0.008871	1	0
MUC17	140453	broad.mit.edu	37	7	100663478	100663478	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:100663478C>A	uc003uxp.1	+	1	115	c.62C>A	c.(61-63)CCA>CAA	p.P21Q	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	21						extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CTCTTGCCCCCACAAGCTGCT	0.667			NA											10	23					0.00185496	0.00204768	0.001855	1	0
MUC17	140453	broad.mit.edu	37	7	100684764	100684764	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:100684764A>G	uc003uxp.1	+	3	10120	c.10067A>G	c.(10066-10068)GAG>GGG	p.E3356G	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3356	Extracellular (Potential).|54.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTCAGTTCTGAGGCTAGCACC	0.483			NA											87	520					0	0	0.00361	0	0
SLC26A5	375611	broad.mit.edu	37	7	103048298	103048298	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:103048298C>T	uc003vbz.2	-	8	1124	c.888G>A	c.(886-888)GCG>GCA	p.A296A	SLC26A5_uc003vbt.1_Silent_p.A296A|SLC26A5_uc003vbu.1_Silent_p.A296A|SLC26A5_uc003vbv.1_Silent_p.A296A|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Silent_p.A296A|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	296	Helical; Name=7; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						GGTGACTTACCGCAAAGAACT	0.438			NA											5	74					0	0	0.001168	0	0
RELN	5649	broad.mit.edu	37	7	103206745	103206745	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:103206745T>C	uc003vca.2	-	33	5022	c.4862A>G	c.(4861-4863)TAT>TGT	p.Y1621C	RELN_uc010liz.2_Missense_Mutation_p.Y1621C	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1621					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TTGGATTCGATACCAGTTGGC	0.388	NSCLC(146;835 1944 15585 22231 52158)		NA											11	44					0	0	0.008291	0	0
LHFPL3	375612	broad.mit.edu	37	7	103969353	103969353	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:103969353C>T	uc003vce.2	+	1	250	c.126C>T	c.(124-126)ATC>ATT	p.I42I	LHFPL3_uc003vcf.2_Silent_p.I42I	NM_199000	NP_945351	Q86UP9	LHPL3_HUMAN	lipoma HMGIC fusion partner-like 3	28	Helical; (Potential).					integral to membrane					0						TGTGGGCCATCTTCACCATCT	0.567			NA											10	25					0	0	0.008291	0	0
SLC26A3	1811	broad.mit.edu	37	7	107432291	107432292	+	Nonsense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:107432291_107432292GG>TT	uc003ver.2	-	4	576_577	c.365_366CC>AA	c.(364-366)TCC>TAA	p.S122*	SLC26A3_uc003ves.2_Nonsense_Mutation_p.S87*	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	122					excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						ATATGTGTCTGGAAGTGCCGAA	0.401			NA											24	61					0	0	0.004672	0	0
NRCAM	4897	broad.mit.edu	37	7	107823173	107823173	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:107823173C>A	uc003vfb.2	-	23	2967	c.2496G>T	c.(2494-2496)GAG>GAT	p.E832D	NRCAM_uc003vfc.2_Missense_Mutation_p.E816D|NRCAM_uc011kmk.1_Missense_Mutation_p.E827D|NRCAM_uc003vfd.2_Missense_Mutation_p.E808D|NRCAM_uc003vfe.2_Missense_Mutation_p.E808D	NM_001037132	NP_001032209	Q92823	NRCAM_HUMAN	neuronal cell adhesion molecule isoform A	832	Fibronectin type-III 2.|Extracellular (Potential).				angiogenesis|axon guidance|axonal fasciculation|cell-cell adhesion|central nervous system development|clustering of voltage-gated sodium channels|neuron migration|positive regulation of neuron differentiation|regulation of axon extension|synapse assembly	external side of plasma membrane|integral to plasma membrane	ankyrin binding			ovary(3)|breast(2)	5						CTACAGCTGGCTCGGGGGCAA	0.483			NA											20	42					1.96292e-10	3.00899e-10	0.010504	1	0
IFRD1	3475	broad.mit.edu	37	7	112098960	112098960	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:112098960C>G	uc003vgh.2	+	6	897	c.454C>G	c.(454-456)CTT>GTT	p.L152V	IFRD1_uc011kmn.1_Missense_Mutation_p.L102V|IFRD1_uc003vgj.2_Missense_Mutation_p.L152V|IFRD1_uc011kmo.1_Intron|IFRD1_uc011kmp.1_Missense_Mutation_p.L102V	NM_001007245	NP_001007246	O00458	IFRD1_HUMAN	interferon-related developmental regulator 1	152					multicellular organismal development|myoblast cell fate determination		binding			kidney(1)|central_nervous_system(1)	2						AGCATCTGTTCTTTGTATTCA	0.408			NA											11	34					0	0	0.001855	0	0
GPR85	54329	broad.mit.edu	37	7	112724719	112724719	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:112724719C>A	uc010ljv.2	-	2	575	c.58G>T	c.(58-60)GCC>TCC	p.A20S	GPR85_uc003vgp.1_Missense_Mutation_p.A20S|GPR85_uc003vgq.2_Missense_Mutation_p.A20S|GPR85_uc010ljw.1_Missense_Mutation_p.A20S	NM_001146266	NP_001139738	P60893	GPR85_HUMAN	G protein-coupled receptor 85	20	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)	2						TTCAGAAAGGCTGTTAGAGGC	0.453			NA											12	45					0.00136819	0.00151231	0.001368	1	0
PPP1R3A	5506	broad.mit.edu	37	7	113518730	113518730	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:113518730C>A	uc010ljy.1	-	4	2448	c.2417G>T	c.(2416-2418)CGT>CTT	p.R806L		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	806					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AATACCTAAACGTGATTCCTT	0.373			NA											19	61					3.99206e-14	6.7865e-14	0.007413	1	0
C7orf58	79974	broad.mit.edu	37	7	120911434	120911435	+	Missense_Mutation	DNP	GG	GG	TT			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	GG	GG	-	-	GG	GG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:120911434_120911435GG>TT	uc003vjq.3	+	22	3265_3266	c.2818_2819GG>TT	c.(2818-2820)GGG>TTG	p.G940L		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	940						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TATAACAATGGGGCGTTACAAA	0.347			NA											42	43					0	0	0.004672	0	0
TAS2R16	50833	broad.mit.edu	37	7	122634999	122634999	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:122634999G>T	uc003vkl.1	-	1	756	c.690C>A	c.(688-690)GCC>GCA	p.A230A		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	230	Helical; Name=6; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						TAAATAAGACGGCAAGGGACC	0.433			NA											12	112					0.000978159	0.00109184	0.010729	1	0
HYAL4	23553	broad.mit.edu	37	7	123514871	123514871	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:123514871T>A	uc003vlc.2	+	4	1649	c.1011T>A	c.(1009-1011)GTT>GTA	p.V337V	HYAL4_uc011knz.1_Silent_p.V337V	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	337	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						CAGGCATTGTTATTTGGGGAG	0.358			NA											4	49					0	0	0.001168	0	0
GRM8	2918	broad.mit.edu	37	7	126882944	126882944	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:126882944C>G	uc003vlr.2	-	1	626	c.315G>C	c.(313-315)ACG>ACC	p.T105T	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.T105T|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	105	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	CCCTAGAGCACGTGTCGAGGA	0.483			NA								HNSCC(24;0.065)			10	52					0	0	0.006214	0	0
OPN1SW	611	broad.mit.edu	37	7	128415650	128415650	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:128415650C>G	uc003vnt.3	-	1	195	c.195G>C	c.(193-195)TTG>TTC	p.L65F		NM_001708	NP_001699	P03999	OPSB_HUMAN	opsin 1 (cone pigments), short-wave-sensitive	65	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0						GGGGCTGCCGCAACTTTTTGT	0.552			NA											38	86					0	0	0.005524	0	0
FLNC	2318	broad.mit.edu	37	7	128482971	128482971	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:128482971C>G	uc003vnz.3	+	16	2722	c.2513C>G	c.(2512-2514)GCG>GGG	p.A838G	FLNC_uc003voa.3_Missense_Mutation_p.A838G	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	838	Filamin 6.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CCACCAGGGGCGGGCCGCTAC	0.592			NA											15	34					0	0	0.00499	0	0
FLNC	2318	broad.mit.edu	37	7	128490526	128490526	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:128490526G>T	uc003vnz.3	+	32	5596	c.5387G>T	c.(5386-5388)GGG>GTG	p.G1796V	FLNC_uc003voa.3_Missense_Mutation_p.G1763V	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1796	Filamin 16.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GTGCAGAAAGGGGAGCTCACA	0.498			NA											40	73					1.07121e-22	1.99677e-22	0.006999	1	0
SMO	6608	broad.mit.edu	37	7	128846355	128846355	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:128846355C>A	uc003vor.2	+	6	1471	c.1191C>A	c.(1189-1191)TAC>TAA	p.Y397*	SMO_uc003vos.2_Nonsense_Mutation_p.Y72*	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	397	Extracellular (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						ACAAGAACTACCGATACCGTG	0.602			NA	Mis		skin basal cell 								30	160					2.36697e-06	3.07399e-06	0.007291	1	0
SMO	6608	broad.mit.edu	37	7	128849169	128849169	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:128849169C>A	uc003vor.2	+	8	1677	c.1397C>A	c.(1396-1398)ACC>AAC	p.T466N	SMO_uc003vos.2_Missense_Mutation_p.T141N	NM_005631	NP_005622	Q99835	SMO_HUMAN	smoothened precursor	466	Helical; Name=6; (Potential).				adenohypophysis development|axon extension involved in axon guidance|canonical Wnt receptor signaling pathway|cardioblast differentiation|central nervous system neuron differentiation|cerebellar cortex morphogenesis|ciliary receptor clustering involved in smoothened signaling pathway|determination of left/right symmetry|dorsal/ventral neural tube patterning|embryonic camera-type eye development|embryonic digestive tract morphogenesis|embryonic neurocranium morphogenesis|embryonic viscerocranium morphogenesis|exocrine pancreas development|facial nerve development|floor plate formation|gonad development|heart morphogenesis|muscle cell fate commitment|negative regulation of apoptosis|neural crest cell migration|neuron fate commitment|neuron projection regeneration|odontogenesis of dentine-containing tooth|osteoblast differentiation|otolith morphogenesis|positive regulation of epithelial cell proliferation|positive regulation of mesenchymal cell proliferation|positive regulation of neuroblast proliferation|positive regulation of smoothened signaling pathway|semicircular canal morphogenesis|smoothened signaling pathway involved in regulation of cerebellar granule cell precursor cell proliferation|smoothened signaling pathway involved in ventral spinal cord patterning|spermatogenesis|vasculogenesis	cilium|cytoplasm|integral to membrane|neuronal cell body|plasma membrane	G-protein coupled receptor activity|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			skin(19)|large_intestine(10)|central_nervous_system(3)|upper_aerodigestive_tract(2)|biliary_tract(1)|lung(1)|liver(1)	37						GTGCTCATTACCTTCAGCTGC	0.592			NA	Mis		skin basal cell 								29	54					5.45727e-16	9.58405e-16	0.008361	1	0
PLXNA4	91584	broad.mit.edu	37	7	131878928	131878928	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:131878928C>G	uc003vra.3	-	14	2978	c.2749G>C	c.(2749-2751)GAG>CAG	p.E917Q		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	917	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCCCCCATCTCACACACGATC	0.592			NA											39	60					0	0	0.004878	0	0
PLXNA4	91584	broad.mit.edu	37	7	132193255	132193255	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:132193255C>A	uc003vra.3	-	2	427	c.198G>T	c.(196-198)GGG>GGT	p.G66G	PLXNA4_uc003vrc.2_Silent_p.G66G|PLXNA4_uc003vrb.2_Silent_p.G66G	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	66	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GATTGACGGCCCCCAAGTAAA	0.572			NA											34	51					9.8876e-21	1.83303e-20	0.004878	1	0
EXOC4	60412	broad.mit.edu	37	7	133622741	133622741	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:133622741G>A	uc003vrk.2	+	14	2160	c.2125G>A	c.(2125-2127)GCC>ACC	p.A709T	EXOC4_uc011kpo.1_Missense_Mutation_p.A608T|EXOC4_uc003vrl.2_Missense_Mutation_p.A319T|EXOC4_uc011kpp.1_Missense_Mutation_p.A241T|EXOC4_uc011kpq.1_5'UTR	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	709					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				TGACCTCAAAGCCTTGGCCAA	0.463			NA											35	65					0	0	0.003755	0	0
AKR1B10	57016	broad.mit.edu	37	7	134215442	134215442	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:134215442A>G	uc003vrr.2	+	2	434	c.114A>G	c.(112-114)GCA>GCG	p.A38A		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	38					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						CCATTGATGCAGGATATCGGC	0.428			NA											15	106					0	0	0.003163	0	0
CALD1	800	broad.mit.edu	37	7	134617956	134617956	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:134617956A>G	uc003vrz.2	+	5	895	c.436A>G	c.(436-438)ACT>GCT	p.T146A	CALD1_uc003vry.2_Missense_Mutation_p.T146A|CALD1_uc003vsa.2_Missense_Mutation_p.T146A|CALD1_uc003vsb.2_Missense_Mutation_p.T146A|CALD1_uc010lmm.2_Missense_Mutation_p.T146A|CALD1_uc011kpt.1_5'UTR|CALD1_uc003vsc.2_Missense_Mutation_p.T140A|CALD1_uc003vsd.2_Missense_Mutation_p.T140A|CALD1_uc011kpu.1_Missense_Mutation_p.T151A|CALD1_uc011kpv.1_Missense_Mutation_p.T10A|CALD1_uc003vse.2_Missense_Mutation_p.T10A	NM_033138	NP_149129	Q05682	CALD1_HUMAN	caldesmon 1 isoform 1	146	Myosin and calmodulin-binding (By similarity).				cellular component movement|muscle contraction	cytosol|focal adhesion|myofibril	actin binding|calmodulin binding|myosin binding|tropomyosin binding				0						AGAAAATGAAACTACCGAGAA	0.458			NA											8	19					0	0	0.006214	0	0
NUP205	23165	broad.mit.edu	37	7	135309933	135309933	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:135309933G>C	uc003vsw.2	+	32	4532	c.4501G>C	c.(4501-4503)GAT>CAT	p.D1501H	NUP205_uc003vsx.2_RNA	NM_015135	NP_055950	Q92621	NU205_HUMAN	nucleoporin 205kDa	1501					carbohydrate metabolic process|glucose transport|mRNA transport|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear pore	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6						GGCTCTACTTGATAGAATTGT	0.413			NA											18	99					0	0	0.00499	0	0
DGKI	9162	broad.mit.edu	37	7	137080404	137080404	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:137080404G>T	uc003vtt.2	-	33	3022	c.3021C>A	c.(3019-3021)AAC>AAA	p.N1007K	DGKI_uc003vtu.2_Missense_Mutation_p.N676K	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	1007	ANK 2.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ACACAGCCCGGTTCCGCTGGC	0.562			NA											15	72					7.05477e-17	1.2532e-16	0.00499	1	0
TRIM24	8805	broad.mit.edu	37	7	138239468	138239468	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:138239468G>T	uc003vuc.2	+	9	1502	c.1287G>T	c.(1285-1287)GAG>GAT	p.E429D	TRIM24_uc003vub.2_Missense_Mutation_p.E429D	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	429					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						AGGATAAAGAGAGCCAGCCAC	0.373	Pancreas(179;936 2074 16128 47811 50326)|Colon(136;168 1735 9344 12243 52014)		NA											40	60					1.96642e-18	3.55251e-18	0.006999	1	0
BRAF	673	broad.mit.edu	37	7	140476711	140476711	+	Splice_Site	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:140476711C>T	uc003vwc.3	-	13	1755	c.1694_splice	c.e13+1	p.D565_splice		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf						activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	ATGGAACTTACTCCATGCCCT	0.363	Colon(40;35 892 2973 5743 27438)		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				13	69					0	0	0.001855	0	0
TAS2R5	54429	broad.mit.edu	37	7	141490554	141490554	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:141490554G>T	uc003vwr.1	+	1	538	c.393G>T	c.(391-393)CTG>CTT	p.L131L		NM_018980	NP_061853	Q9NYW4	TA2R5_HUMAN	taste receptor T2R5	131	Helical; Name=4; (Potential).				chemosensory behavior|sensory perception of taste		taste receptor activity				0	Melanoma(164;0.0171)					GGTGCCTTCTGGGCTACTTTA	0.463			NA											18	44					3.51602e-12	5.67099e-12	0.008871	1	0
MGAM	8972	broad.mit.edu	37	7	141795484	141795484	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:141795484C>A	uc003vwy.2	+	41	4944	c.4890C>A	c.(4888-4890)GGC>GGA	p.G1630G		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1630	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACACGGAGGGCGTCACTGTTG	0.483			NA											56	194					3.7469e-33	7.23011e-33	0.00361	1	0
EPHB6	2051	broad.mit.edu	37	7	142561061	142561061	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:142561061G>T	uc011kst.1	+	5	863	c.76G>T	c.(76-78)GTG>TTG	p.V26L	EPHB6_uc011ksu.1_Missense_Mutation_p.V26L|EPHB6_uc003wbs.2_5'UTR|EPHB6_uc003wbt.2_5'UTR|EPHB6_uc003wbu.2_5'UTR	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	26						extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GCTGCTCCTGGTGTCTTCAGT	0.567			NA											3	51					0.004672	0.00503002	0.004672	1	0
KEL	3792	broad.mit.edu	37	7	142651292	142651292	+	Missense_Mutation	SNP	C	C	G	rs61729059		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:142651292C>G	uc003wcb.2	-	8	1113	c.903G>C	c.(901-903)ATG>ATC	p.M301I		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	301	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					CGATAGTGACCATCTGGAAGA	0.552			NA											12	26					0	0	0.010729	0	0
FAM131B	9715	broad.mit.edu	37	7	143053913	143053913	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:143053913T>A	uc003wct.2	-	6	2435	c.729A>T	c.(727-729)GGA>GGT	p.G243G	FAM131B_uc010loz.2_Silent_p.G211G|FAM131B_uc003wcu.3_Silent_p.G243G|FAM131B_uc010lpa.2_Silent_p.G271G	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	243											0	Melanoma(164;0.205)					GAGCAGAGTATCCTGAAGCTG	0.602			NA											23	96					0	0	0.012319	0	0
FAM131B	9715	broad.mit.edu	37	7	143053924	143053924	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:143053924G>T	uc003wct.2	-	6	2424	c.718C>A	c.(718-720)CCA>ACA	p.P240T	FAM131B_uc010loz.2_Missense_Mutation_p.P208T|FAM131B_uc003wcu.3_Missense_Mutation_p.P240T|FAM131B_uc010lpa.2_Missense_Mutation_p.P268T	NM_014690	NP_055505	Q86XD5	F131B_HUMAN	hypothetical protein LOC9715 isoform b	240											0	Melanoma(164;0.205)					CCTGAAGCTGGTTGGGAAGGT	0.602			NA											43	71					6.4771e-29	1.23999e-28	0.010771	1	0
OR6B1	135946	broad.mit.edu	37	7	143701304	143701304	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:143701304G>T	uc003wdt.1	+	1	215	c.215G>T	c.(214-216)TGG>TTG	p.W72L		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TTGGAGACCTGGTACATCTCT	0.448			NA											23	105					1.96895e-08	2.81278e-08	0.00278	1	0
TPK1	27010	broad.mit.edu	37	7	144345917	144345917	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:144345917C>G	uc003weq.2	-	5	344	c.241G>C	c.(241-243)GAA>CAA	p.E81Q	TPK1_uc003weo.2_Missense_Mutation_p.E76Q|TPK1_uc003wep.2_RNA|TPK1_uc003wer.2_Missense_Mutation_p.E81Q|TPK1_uc003wes.2_RNA	NM_022445	NP_071890	Q9H3S4	TPK1_HUMAN	thiamin pyrophosphokinase 1 isoform a	81					thiamine diphosphate biosynthetic process	cytosol	ATP binding|kinase activity|thiamine diphosphokinase activity			ovary(2)	2					Thiamine(DB00152)	GCATAGTATTCTCTGACTTCA	0.308	Ovarian(45;88 1034 2073 5829 28455)		NA											15	128					0	0	0.003163	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147869463	147869463	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:147869463C>T	uc003weu.1	+	18	3419	c.2903C>T	c.(2902-2904)ACC>ATC	p.T968I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	968	EGF-like 2.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGCCATTGCACCAGCTATGGA	0.493			NA								HNSCC(39;0.1)			18	94					0	0	0.008871	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080953	148080953	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:148080953C>A	uc003weu.1	+	22	4204	c.3688C>A	c.(3688-3690)CCC>ACC	p.P1230T	CNTNAP2_uc003wev.1_Missense_Mutation_p.P7T	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1230	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			CGCCACCGACCCCTGGCACCT	0.448			NA								HNSCC(39;0.1)			9	32					0.000442599	0.000502282	0.006214	1	0
ZNF467	168544	broad.mit.edu	37	7	149462026	149462026	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:149462026C>G	uc003wgd.2	-	5	1706	c.1565G>C	c.(1564-1566)CGC>CCC	p.R522P	ZNF467_uc003wgc.2_Intron	NM_207336	NP_997219	Q7Z7K2	ZN467_HUMAN	zinc finger protein 467	522	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GCTGAAGCTGCGGGCGCAGAC	0.701			NA											5	52					0	0	0.000602	0	0
SSPO	23145	broad.mit.edu	37	7	149477177	149477177	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:149477177A>T	uc010lpk.2	+	11	1354	c.1354A>T	c.(1354-1356)AGG>TGG	p.R452W	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	452					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GGCCTGTGCCAGGCGGCACAT	0.657			NA											4	9					0	0	0.009096	0	0
SSPO	23145	broad.mit.edu	37	7	149490413	149490413	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:149490413C>A	uc010lpk.2	+	40	5889	c.5889C>A	c.(5887-5889)CCC>CCA	p.P1963P		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	1963	TSP type-1 3.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			AGACGGAGCCCTGTGAGGGGT	0.532			NA											11	43					9.05144e-12	1.44077e-11	0.001855	1	0
SSPO	23145	broad.mit.edu	37	7	149493717	149493717	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:149493717G>T	uc010lpk.2	+	46	6713	c.6713G>T	c.(6712-6714)GGA>GTA	p.G2238V		NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	2238	LDL-receptor class A 8.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCAGGGGTTGGACTCCGCTGT	0.657			NA											17	21					1.02788e-11	1.63461e-11	0.00499	1	0
REPIN1	29803	broad.mit.edu	37	7	150069097	150069097	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:150069097G>T	uc010lpq.1	+	4	1256	c.767G>T	c.(766-768)CGC>CTC	p.R256L	REPIN1_uc003whd.2_Missense_Mutation_p.R245L|REPIN1_uc010lpr.1_Missense_Mutation_p.R313L|REPIN1_uc003whc.2_Missense_Mutation_p.R256L|REPIN1_uc003whe.2_Missense_Mutation_p.R256L	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	256	C2H2-type 6.				DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			GCTCACCGCCGCGTGCACACG	0.602			NA											9	51					0.00621372	0.00666455	0.006214	1	0
ZNF775	285971	broad.mit.edu	37	7	150094380	150094380	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:150094380G>T	uc003whf.1	+	3	936	c.811G>T	c.(811-813)GGC>TGC	p.G271C		NM_173680	NP_775951	Q96BV0	ZN775_HUMAN	zinc finger protein 775	271					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.0173)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		cgcggtctccggccccgaggg	0.353			NA											8	5					5.18039e-06	6.58689e-06	0.00308	1	0
GIMAP4	55303	broad.mit.edu	37	7	150267034	150267034	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:150267034A>T	uc003whl.2	+	2	127	c.45A>T	c.(43-45)CCA>CCT	p.P15P	GIMAP4_uc011kuu.1_5'UTR|GIMAP4_uc011kuv.1_Silent_p.P15P	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	15							GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCAGCACACCAGGGGCCAGTT	0.557			NA											16	51					0	0	0.007413	0	0
NOS3	4846	broad.mit.edu	37	7	150698406	150698406	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:150698406T>A	uc003wif.2	+	11	1617	c.1321T>A	c.(1321-1323)TGC>AGC	p.C441S	NOS3_uc011kuy.1_Missense_Mutation_p.C235S|NOS3_uc011kuz.1_Missense_Mutation_p.C441S|NOS3_uc011kva.1_Missense_Mutation_p.C441S|NOS3_uc011kvb.1_Missense_Mutation_p.C441S	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	441	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CAGGGGGGGCTGCCCTGCAGA	0.617			NA											57	67					0	0	0.00361	0	0
ACCN3	9311	broad.mit.edu	37	7	150746083	150746083	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:150746083C>A	uc003win.2	+	1	479	c.111C>A	c.(109-111)AGC>AGA	p.S37R	ACCN3_uc003wio.2_Missense_Mutation_p.S37R|ACCN3_uc003wip.2_Missense_Mutation_p.S37R|ACCN3_uc003wiq.2_RNA	NM_004769	NP_004760	Q9UHC3	ACCN3_HUMAN	amiloride-sensitive cation channel 3 isoform a	37	Cytoplasmic (Potential).				sensory perception|signal transduction	cytoplasm|integral to plasma membrane	ligand-gated sodium channel activity			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GGCCAGGCAGCCTGAGCCTGC	0.697			NA											10	53					3.86212e-05	4.67636e-05	0.008291	1	0
SLC4A2	6522	broad.mit.edu	37	7	150764060	150764060	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:150764060G>T	uc003wit.3	+	7	1202	c.946G>T	c.(946-948)GCC>TCC	p.A316S	SLC4A2_uc011kve.1_Missense_Mutation_p.A307S|SLC4A2_uc003wiu.3_Missense_Mutation_p.A302S	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	316	Cytoplasmic (Potential).|Pro-rich.				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CCGACCCCGGGCCCCCCACAA	0.632			NA											13	87					3.27435e-08	4.64253e-08	0.00245	1	0
DLGAP2	9228	broad.mit.edu	37	8	1497162	1497162	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:1497162G>T	uc003wpl.2	+	2	400	c.303G>T	c.(301-303)GCG>GCT	p.A101A	DLGAP2_uc003wpm.2_Silent_p.A101A	NM_004745	NP_004736	Q9P1A6	DLGP2_HUMAN	discs large-associated protein 2	180					neuron-neuron synaptic transmission	cell junction|neurofilament|postsynaptic density|postsynaptic membrane	protein binding				0		Ovarian(12;0.0271)|Hepatocellular(245;0.0838)|Colorectal(14;0.0846)		BRCA - Breast invasive adenocarcinoma(11;0.000169)|READ - Rectum adenocarcinoma(644;0.171)		TGGCCCACGCGGGCGCCAAGA	0.672			NA											5	11					1.23904e-05	1.53974e-05	0.000602	1	0
MYOM2	9172	broad.mit.edu	37	8	2077162	2077162	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:2077162C>G	uc003wpx.3	+	32	3880	c.3742C>G	c.(3742-3744)CGA>GGA	p.R1248G	MYOM2_uc011kwi.1_Missense_Mutation_p.R673G	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1248					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AGAAGGAATACGACTTCAGTG	0.453			NA											8	18					0	0	0.004482	0	0
CSMD1	64478	broad.mit.edu	37	8	2857553	2857553	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:2857553G>C	uc011kwk.1	-	53	8523	c.8133C>G	c.(8131-8133)TTC>TTG	p.F2711L	CSMD1_uc011kwj.1_Missense_Mutation_p.F2040L|CSMD1_uc010lrg.2_Missense_Mutation_p.F721L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2711	Extracellular (Potential).|Sushi 18.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCACAAGCCGGAAACCAGGAT	0.532			NA											19	72					0	0	0.012319	0	0
CSMD1	64478	broad.mit.edu	37	8	2875998	2875998	+	Splice_Site	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:2875998C>A	uc011kwk.1	-	52	8422	c.8032_splice	c.e52+1	p.A2678_splice	CSMD1_uc011kwj.1_Splice_Site_p.A2007_splice|CSMD1_uc010lrg.2_Intron	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor							integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GATGAATTTACCCAGACATCG	0.438			NA											30	97					1.39806e-14	2.41289e-14	0.008361	1	0
HR	55806	broad.mit.edu	37	8	21978634	21978634	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:21978634A>G	uc003xas.2	-	10	2976	c.2311T>C	c.(2311-2313)TTG>CTG	p.L771L	HR_uc003xat.2_Silent_p.L771L	NM_005144	NP_005135	O43593	HAIR_HUMAN	hairless protein isoform a	771							DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|ovary(1)	2		Breast(100;0.000162)|Acute lymphoblastic leukemia(644;0.0775)|Prostate(55;0.116)		KIRC - Kidney renal clear cell carcinoma(542;1.19e-05)|BRCA - Breast invasive adenocarcinoma(99;3.56e-05)|Colorectal(74;0.00191)|COAD - Colon adenocarcinoma(73;0.0615)|READ - Rectum adenocarcinoma(644;0.1)		TCATGGCCCAAGCAGAGTTTG	0.652			NA											15	61					0	0	0.003163	0	0
PEBP4	157310	broad.mit.edu	37	8	22570953	22570953	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:22570953G>T	uc003xcn.1	-	7	706	c.614C>A	c.(613-615)ACC>AAC	p.T205N		NM_144962	NP_659399	Q96S96	PEBP4_HUMAN	phosphatidylethanolamine-binding protein 4	205						lysosome				ovary(1)|large_intestine(1)|breast(1)|skin(1)	4		Prostate(55;0.0453)|Breast(100;0.103)		Colorectal(74;0.0434)|COAD - Colon adenocarcinoma(73;0.124)		AGCCTGGAGGGTTGGTGAGTC	0.572			NA											10	18					1.08611e-07	1.49384e-07	0.010729	1	0
ESCO2	157570	broad.mit.edu	37	8	27634552	27634552	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:27634552G>T	uc003xgg.2	+	3	810	c.727G>T	c.(727-729)GAT>TAT	p.D243Y	ESCO2_uc010luy.1_RNA|ESCO2_uc003xgh.2_Missense_Mutation_p.D243Y	NM_001017420	NP_001017420	Q56NI9	ESCO2_HUMAN	establishment of cohesion 1 homolog 2	243					cell cycle|post-translational protein acetylation|regulation of DNA replication	chromatin|nucleus	acyltransferase activity|metal ion binding			central_nervous_system(1)	1		Ovarian(32;0.000953)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0204)|KIRC - Kidney renal clear cell carcinoma(542;0.0955)|Kidney(114;0.115)|Colorectal(74;0.132)		AGTCATTGAAGATTCTGATGT	0.388			NA							SC_Phocomelia_syndrome				4	30					0.00024832	0.000286393	0.009096	1	0
ZNF703	80139	broad.mit.edu	37	8	37556059	37556059	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:37556059C>G	uc003xjy.1	+	2	1837	c.1640C>G	c.(1639-1641)CCC>CGC	p.P547R		NM_025069	NP_079345	Q9H7S9	ZN703_HUMAN	zinc finger protein 703	547					adherens junction assembly|mammary gland epithelial cell differentiation|negative regulation of homotypic cell-cell adhesion|negative regulation of transcription, DNA-dependent|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of mammary gland epithelial cell proliferation|regulation of canonical Wnt receptor signaling pathway|regulation of cell cycle|regulation of transforming growth factor beta receptor signaling pathway|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|protein binding|zinc ion binding			breast(1)|pancreas(1)	2			BRCA - Breast invasive adenocarcinoma(5;7.93e-25)|LUSC - Lung squamous cell carcinoma(8;1.05e-09)			CGGTACCACCCCTATGGCAAG	0.512			NA											3	9					0	0	0.004672	0	0
C8orf86	389649	broad.mit.edu	37	8	38369939	38369939	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:38369939C>A	uc003xlx.1	-	3	663	c.638G>T	c.(637-639)GGG>GTG	p.G213V		NM_207412	NP_997295	Q6ZUL3	CH086_HUMAN	hypothetical protein LOC389649	213											0						cacctgtgccccagaaagcac	0.169			NA											9	26					0.000274275	0.000314197	0.004482	1	0
ADAM32	203102	broad.mit.edu	37	8	39044509	39044509	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:39044509G>T	uc003xmt.3	+	11	1242	c.997G>T	c.(997-999)GAC>TAC	p.D333Y	ADAM32_uc011lch.1_Intron|ADAM32_uc003xmu.3_Intron	NM_145004	NP_659441	Q8TC27	ADA32_HUMAN	a disintegrin and metalloprotease domain 32	333	Peptidase M12B.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3		all_cancers(7;3e-05)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00771)|Breast(189;0.0503)	LUSC - Lung squamous cell carcinoma(45;6.2e-07)|Colorectal(1;0.00699)|READ - Rectum adenocarcinoma(1;0.146)			ATCATATGACGACCCAAAGAA	0.348			NA											9	25					5.4927e-09	8.0151e-09	0.004482	1	0
SLC20A2	6575	broad.mit.edu	37	8	42294897	42294897	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:42294897C>A	uc010lxl.2	-	8	1827	c.1133G>T	c.(1132-1134)CGG>CTG	p.R378L	SLC20A2_uc010lxm.2_Missense_Mutation_p.R378L|SLC20A2_uc003xpe.2_Missense_Mutation_p.R378L|SLC20A2_uc011lcu.1_Missense_Mutation_p.R180L	NM_006749	NP_006740	Q08357	S20A2_HUMAN	solute carrier family 20, member 2	378	Cytoplasmic (Potential).				interspecies interaction between organisms	integral to plasma membrane|membrane fraction	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity|sodium:phosphate symporter activity			ovary(2)	2	all_lung(13;8.33e-12)|Lung NSC(13;1.41e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.211)	all_lung(54;0.00671)|Lung NSC(58;0.0184)|Esophageal squamous(32;0.131)|Hepatocellular(245;0.133)|Renal(179;0.151)	BRCA - Breast invasive adenocarcinoma(8;5.73e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00419)|Lung(22;0.0302)|LUSC - Lung squamous cell carcinoma(45;0.0869)			GCGCAGCAGCCGGTAGTTGCT	0.597			NA											30	78					8.4185e-14	1.42261e-13	0.012213	1	0
KIAA0146	23514	broad.mit.edu	37	8	48614372	48614372	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:48614372C>T	uc003xqd.2	+	13	1872	c.1863C>T	c.(1861-1863)CCC>CCT	p.P621P	KIAA0146_uc011ldb.1_Silent_p.P621P|KIAA0146_uc010lxs.2_Silent_p.P96P|KIAA0146_uc011ldc.1_Silent_p.P551P|KIAA0146_uc011ldd.1_Silent_p.P561P|KIAA0146_uc003xqe.2_Silent_p.P96P|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Silent_p.P310P|KIAA0146_uc010lxt.2_Silent_p.P310P|KIAA0146_uc011ldf.1_Silent_p.P126P|KIAA0146_uc011ldg.1_Silent_p.P111P|KIAA0146_uc010lxv.1_Silent_p.P115P	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	621											0		Lung NSC(58;0.175)				ACGAAGACCCCATTTATAAGC	0.413			NA											31	123					0	0	0.010818	0	0
RB1CC1	9821	broad.mit.edu	37	8	53555277	53555277	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:53555277T>C	uc003xre.3	-	17	4641	c.4083A>G	c.(4081-4083)CAA>CAG	p.Q1361Q	RB1CC1_uc003xrf.3_Silent_p.Q1361Q	NM_014781	NP_055596	Q8TDY2	RBCC1_HUMAN	Rb1-inducible coiled coil protein 1 isoform 1	1361	Potential.				autophagy|cell cycle|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding			ovary(8)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	11		all_cancers(86;0.137)|all_epithelial(80;0.00494)|Lung NSC(129;0.011)|all_lung(136;0.023)				TATCCCGTTCTTGTTGCTGCA	0.274	GBM(180;1701 2102 13475 42023 52570)		NA											12	18					0	0	0.001368	0	0
CHD7	55636	broad.mit.edu	37	8	61766937	61766937	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:61766937G>A	uc003xue.2	+	32	7268	c.6791G>A	c.(6790-6792)AGA>AAA	p.R2264K		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2264					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			GCTGTCTCTAGAGGGAAGAAT	0.413			NA											3	30					0	0	0.004672	0	0
VCPIP1	80124	broad.mit.edu	37	8	67578701	67578701	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:67578701C>A	uc003xwn.2	-	1	752	c.493G>T	c.(493-495)GAC>TAC	p.D165Y	SGK3_uc003xwp.2_5'Flank|C8orf44_uc003xwo.1_5'Flank	NM_025054	NP_079330	Q96JH7	VCIP1_HUMAN	valosin containing protein (p97)/p47 complex	165					protein ubiquitination	endoplasmic reticulum|Golgi stack	ubiquitin-specific protease activity			lung(2)|ovary(2)|central_nervous_system(1)|breast(1)|skin(1)|kidney(1)	8		Lung NSC(129;0.142)|all_lung(136;0.227)	Epithelial(68;0.000771)|OV - Ovarian serous cystadenocarcinoma(28;0.00248)|all cancers(69;0.00296)|BRCA - Breast invasive adenocarcinoma(89;0.149)			AAGGCGCGGTCACCCAGTAAG	0.552	NSCLC(179;265 2915 6144 43644)		NA											21	74					1.9806e-07	2.71096e-07	0.002299	1	0
PRDM14	63978	broad.mit.edu	37	8	70981464	70981464	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:70981464G>T	uc003xym.2	-	2	834	c.632C>A	c.(631-633)CCC>CAC	p.P211H		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	211					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CTCCAGGCTGGGAGTGACCCC	0.592	NSCLC(129;99 1813 5906 40656 46114)		NA											50	39					1.22102e-19	2.24403e-19	0.00361	1	0
PI15	51050	broad.mit.edu	37	8	75737725	75737725	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:75737725G>C	uc003yal.2	+	2	420	c.241G>C	c.(241-243)GTG>CTG	p.V81L	uc003yak.1_Intron|PI15_uc003yam.2_Missense_Mutation_p.V81L	NM_015886	NP_056970	O43692	PI15_HUMAN	protease inhibitor 15 preproprotein	81						extracellular region	peptidase inhibitor activity			central_nervous_system(2)|ovary(1)	3	Breast(64;0.137)		BRCA - Breast invasive adenocarcinoma(89;0.104)|Epithelial(68;0.118)			TCGGGGCAAAGTGTTCCCACC	0.388			NA											6	27					0	0	0.001168	0	0
ZFHX4	79776	broad.mit.edu	37	8	77617528	77617528	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:77617528C>T	uc003yav.2	+	2	1592	c.1205C>T	c.(1204-1206)CCA>CTA	p.P402L	ZFHX4_uc003yat.1_Missense_Mutation_p.P402L|ZFHX4_uc003yau.1_Missense_Mutation_p.P402L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P402L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	402						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACCCAAATGCCAAAGGCTGAA	0.527			NA								HNSCC(33;0.089)			11	12					0	0	0.008291	0	0
PEX2	5828	broad.mit.edu	37	8	77895554	77895554	+	Silent	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:77895554T>G	uc003yax.2	-	4	1319	c.861A>C	c.(859-861)GTA>GTC	p.V287V	PEX2_uc003yay.2_Silent_p.V287V|PEX2_uc003yaz.2_Silent_p.V287V	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	287					peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						GCAGACTGTGTACTTCTGTGC	0.383			NA											21	96					0	0	0.00278	0	0
PEX2	5828	broad.mit.edu	37	8	77895675	77895675	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:77895675C>A	uc003yax.2	-	4	1198	c.740G>T	c.(739-741)TGT>TTT	p.C247F	PEX2_uc003yay.2_Missense_Mutation_p.C247F|PEX2_uc003yaz.2_Missense_Mutation_p.C247F	NM_000318	NP_000309	P28328	PEX2_HUMAN	peroxin 2	247	RING-type.				peroxisome organization	integral to peroxisomal membrane	protein binding|zinc ion binding			ovary(1)	1						CCACTCTCCACATAGAGCGCA	0.428			NA											7	45					0.00198382	0.00217721	0.001984	1	0
PSKH2	85481	broad.mit.edu	37	8	87076652	87076652	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:87076652G>C	uc011lfy.1	-	2	394	c.394C>G	c.(394-396)CAA>GAA	p.Q132E		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	132	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			ATGTAAACTTGATCCTCAGTC	0.542			NA											16	38					0	0	0.004007	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885086	88885086	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:88885086G>T	uc003ydz.2	-	1	1211	c.1114C>A	c.(1114-1116)CTC>ATC	p.L372I		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	372										ovary(1)	1						AAGCCCCCGAGGCGAGAAGAG	0.592			NA											9	39					2.17888e-05	2.68607e-05	0.006214	1	0
MMP16	4325	broad.mit.edu	37	8	89068387	89068387	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:89068387C>A	uc003yeb.3	-	8	1624	c.1342G>T	c.(1342-1344)GTC>TTC	p.V448F		NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	448	Extracellular (Potential).|Hemopexin-like 3.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						GTTTTCCCGACGTCCTCCCAC	0.413			NA											10	32					2.17888e-05	2.68607e-05	0.006214	1	0
MMP16	4325	broad.mit.edu	37	8	89086929	89086929	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:89086929C>G	uc003yeb.3	-	7	1408	c.1126G>C	c.(1126-1128)GGA>CGA	p.G376R	MMP16_uc003yec.2_Missense_Mutation_p.G376R	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	376	Extracellular (Potential).|Hemopexin-like 1.				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						ATTGGGTATCCATCCATCACC	0.463			NA											13	63					0	0	0.001368	0	0
SLC26A7	115111	broad.mit.edu	37	8	92375762	92375762	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:92375762A>T	uc003yex.2	+	14	1762	c.1484A>T	c.(1483-1485)GAC>GTC	p.D495V	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Missense_Mutation_p.D495V|SLC26A7_uc003yfa.2_Missense_Mutation_p.D495V	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	495	STAS.|Cytoplasmic (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			ACAGAAATGGACAGTGTAAGT	0.249			NA											7	22					0	0	0.00308	0	0
RBM12B	389677	broad.mit.edu	37	8	94746596	94746596	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:94746596C>A	uc003yfz.2	-	3	2236	c.2043G>T	c.(2041-2043)GAG>GAT	p.E681D		NM_203390	NP_976324	Q8IXT5	RB12B_HUMAN	RNA binding motif protein 12B	681							nucleotide binding|RNA binding				0	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			GCCTAAAGTCCTCCTCTGGGG	0.617			NA											42	75					6.68952e-21	1.2415e-20	0.013114	1	0
DPY19L4	286148	broad.mit.edu	37	8	95792642	95792642	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:95792642A>T	uc003ygx.2	+	15	1755	c.1631A>T	c.(1630-1632)GAG>GTG	p.E544V		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	544						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					TTATGGAAAGAGGtaaaaaaa	0.294			NA											5	15					0	0	0.000602	0	0
PTDSS1	9791	broad.mit.edu	37	8	97307406	97307406	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:97307406G>T	uc003yht.1	+	5	624	c.522G>T	c.(520-522)TGG>TGT	p.W174C	PTDSS1_uc003yhu.1_Missense_Mutation_p.W28C	NM_014754	NP_055569	P48651	PTSS1_HUMAN	phosphatidylserine synthase 1	174	Helical; (Potential).				phosphatidylserine biosynthetic process	integral to membrane	transferase activity			ovary(1)	1	Breast(36;6.18e-05)				Phosphatidylserine(DB00144)	GACATTTCTGGGGCTGGGCCA	0.468			NA											5	38					0.000602214	0.000676645	0.000602	1	0
SDC2	6383	broad.mit.edu	37	8	97605770	97605770	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:97605770A>T	uc003yhv.1	+	2	741	c.123A>T	c.(121-123)TCA>TCT	p.S41S	SDC2_uc011lgu.1_Silent_p.S12S	NM_002998	NP_002989	P34741	SDC2_HUMAN	syndecan 2 precursor	41	Extracellular (Potential).					integral to plasma membrane	cytoskeletal protein binding|PDZ domain binding			ovary(2)	2	Breast(36;3.41e-05)				Sargramostim(DB00020)	AAGAAGCTTCAGGAGTGTATC	0.488			NA											8	28					0	0	0.00308	0	0
RIMS2	9699	broad.mit.edu	37	8	104898412	104898412	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:104898412G>A	uc003yls.2	+	2	1160	c.919G>A	c.(919-921)GAT>AAT	p.D307N	RIMS2_uc003ylp.2_Missense_Mutation_p.D529N|RIMS2_uc003ylw.2_Missense_Mutation_p.D337N|RIMS2_uc003ylq.2_Missense_Mutation_p.D337N|RIMS2_uc003ylr.2_Missense_Mutation_p.D337N	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	560					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TACAAGTTGTGATGATGTTGA	0.363			NA								HNSCC(12;0.0054)			5	15					0	0	0.004482	0	0
RIMS2	9699	broad.mit.edu	37	8	105161047	105161047	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:105161047G>T	uc003yls.2	+	23	3600	c.3359G>T	c.(3358-3360)AGT>ATT	p.S1120I	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Missense_Mutation_p.S1109I|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			TCACGGAAAAGTCGCAGTGCT	0.453			NA								HNSCC(12;0.0054)			31	40					9.93527e-08	1.38556e-07	0.002836	1	0
TM7SF4	81501	broad.mit.edu	37	8	105361495	105361495	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:105361495G>T	uc003ylx.1	+	2	764	c.715G>T	c.(715-717)GGT>TGT	p.G239C		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	239					osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GGGCCCTTGTGGTTGGAAGTA	0.502			NA											32	29					6.04164e-23	1.13867e-22	0.010818	1	0
ZFPM2	23414	broad.mit.edu	37	8	106813771	106813771	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:106813771T>A	uc003ymd.2	+	8	1484	c.1461T>A	c.(1459-1461)AAT>AAA	p.N487K	ZFPM2_uc011lhs.1_Missense_Mutation_p.N218K	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	487					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TTCAGCCTAATATTGGGCCTT	0.438			NA											49	50					0	0	0.013114	0	0
ZFPM2	23414	broad.mit.edu	37	8	106813782	106813782	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:106813782C>A	uc003ymd.2	+	8	1495	c.1472C>A	c.(1471-1473)TCT>TAT	p.S491Y	ZFPM2_uc011lhs.1_Missense_Mutation_p.S222Y	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	491					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			ATTGGGCCTTCTTTCCCTGTG	0.443			NA											17	90					3.32936e-07	4.48132e-07	0.006122	1	0
PKHD1L1	93035	broad.mit.edu	37	8	110457187	110457187	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:110457187C>T	uc003yne.2	+	38	5193	c.5089C>T	c.(5089-5091)CAT>TAT	p.H1697Y		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1697	IPT/TIG 9.|Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CCTTATGGGTCATTTCCCATG	0.438			NA								HNSCC(38;0.096)			53	77					0	0	0.00361	0	0
CSMD3	114788	broad.mit.edu	37	8	113293519	113293519	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:113293519G>T	uc003ynu.2	-	59	9551	c.9392C>A	c.(9391-9393)ACA>AAA	p.T3131K	CSMD3_uc003yns.2_Missense_Mutation_p.T2333K|CSMD3_uc003ynt.2_Missense_Mutation_p.T3091K|CSMD3_uc011lhx.1_Missense_Mutation_p.T2962K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3131	Extracellular (Potential).|Sushi 23.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGAAAATGTTGTGCCATCAAT	0.413			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			12	14					0.00010058	0.000118575	0.001368	1	0
CSMD3	114788	broad.mit.edu	37	8	113293559	113293559	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:113293559C>A	uc003ynu.2	-	59	9511	c.9352G>T	c.(9352-9354)GGA>TGA	p.G3118*	CSMD3_uc003yns.2_Nonsense_Mutation_p.G2320*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.G3078*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.G2949*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3118	Extracellular (Potential).|Sushi 23.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GCTGTGGTTCCTGGGTTACCA	0.373			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			6	9					0.000157383	0.000182879	0.00308	1	0
CSMD3	114788	broad.mit.edu	37	8	113504867	113504867	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:113504867C>A	uc003ynu.2	-	31	5288	c.5129G>T	c.(5128-5130)GGC>GTC	p.G1710V	CSMD3_uc003yns.2_Missense_Mutation_p.G982V|CSMD3_uc003ynt.2_Missense_Mutation_p.G1670V|CSMD3_uc011lhx.1_Missense_Mutation_p.G1606V	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1710	Extracellular (Potential).|Sushi 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AAGTCTGGTGCCATTCATTAT	0.338			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			14	51					2.32078e-09	3.44872e-09	0.003163	1	0
CSMD3	114788	broad.mit.edu	37	8	113569024	113569024	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:113569024C>A	uc003ynu.2	-	25	4361	c.4202G>T	c.(4201-4203)AGG>ATG	p.R1401M	CSMD3_uc003yns.2_Missense_Mutation_p.R673M|CSMD3_uc003ynt.2_Missense_Mutation_p.R1361M|CSMD3_uc011lhx.1_Missense_Mutation_p.R1297M	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1401	Extracellular (Potential).|Sushi 7.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GTCCCATGCCCTTCTCTCCCC	0.428			NA								HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			19	27					2.89027e-11	4.53689e-11	0.002299	1	0
TRPS1	7227	broad.mit.edu	37	8	116599565	116599565	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:116599565C>T	uc003ynz.2	-	4	2783	c.2324G>A	c.(2323-2325)GGG>GAG	p.G775E	TRPS1_uc011lhy.1_Missense_Mutation_p.G779E|TRPS1_uc003yny.2_Missense_Mutation_p.G788E|TRPS1_uc010mcy.2_Missense_Mutation_p.G775E	NM_014112	NP_054831	Q9UHF7	TRPS1_HUMAN	zinc finger transcription factor TRPS1	775	Mediates interaction with GLI3.				negative regulation of transcription from RNA polymerase II promoter|NLS-bearing substrate import into nucleus|regulation of chondrocyte differentiation|skeletal system development|transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|pancreas(1)|lung(1)|kidney(1)	7	all_cancers(13;5.44e-23)|all_epithelial(1;2.14e-27)|Lung NSC(37;2.55e-05)|Ovarian(258;0.0219)		Epithelial(1;9.78e-37)|all cancers(1;3.14e-31)|BRCA - Breast invasive adenocarcinoma(1;2.56e-12)			CTCTTTGAGCCCGTCCTTCTC	0.507			NA							Langer-Giedion_syndrome				128	154					0	0	0.00361	0	0
DEPDC6	64798	broad.mit.edu	37	8	121021350	121021350	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:121021350C>T	uc003yow.3	+	8	1266	c.1079C>T	c.(1078-1080)CCT>CTT	p.P360L	DEPDC6_uc011lid.1_Missense_Mutation_p.P259L	NM_022783	NP_073620	Q8TB45	DPTOR_HUMAN	DEP domain containing 6	360	PDZ.				intracellular signal transduction|negative regulation of cell size|negative regulation of protein kinase activity|negative regulation of TOR signaling cascade|regulation of apoptosis	intracellular	protein binding				0	Lung NSC(37;9.35e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			CCCAGTGGCCCTGCAGCCGCA	0.507			NA											27	32					0	0	0.003954	0	0
COL14A1	7373	broad.mit.edu	37	8	121239003	121239003	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:121239003G>T	uc003yox.2	+	16	2267	c.2002G>T	c.(2002-2004)GAG>TAG	p.E668*	COL14A1_uc003yoy.2_Nonsense_Mutation_p.E346*	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	668	Fibronectin type-III 5.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			GAAGACTGAGGAGGTGAGTTT	0.448			NA											6	28					0.00116845	0.00129404	0.001168	1	0
CYP11B2	1585	broad.mit.edu	37	8	143999226	143999226	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:143999226C>T	uc003yxk.1	-	1	34	c.31G>A	c.(31-33)GTG>ATG	p.V11M		NM_000498	NP_000489	P19099	C11B2_HUMAN	cytochrome P450, family 11, subfamily B,	11					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|potassium ion homeostasis|regulation of blood volume by renal aldosterone|sodium ion homeostasis|xenobiotic metabolic process		corticosterone 18-monooxygenase activity|electron carrier activity|steroid 11-beta-monooxygenase activity				0	all_cancers(97;5.56e-11)|all_epithelial(106;2.49e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Candesartan(DB00796)|Metyrapone(DB01011)	GGCGCTGCCACGCACACCTCT	0.612			NA							Familial_Hyperaldosteronism_type_I				50	59					0	0	0.00361	0	0
EEF1D	1936	broad.mit.edu	37	8	144662227	144662227	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:144662227C>A	uc011lki.1	-	7	1031	c.762G>T	c.(760-762)GTG>GTT	p.V254V	NAPRT1_uc003yym.3_5'Flank|NAPRT1_uc003yyn.3_5'Flank|NAPRT1_uc011lkh.1_5'Flank|NAPRT1_uc003yyo.3_5'Flank|EEF1D_uc003yyp.1_Silent_p.V596V|EEF1D_uc003yyq.1_Silent_p.V670V|EEF1D_uc011lkj.1_Silent_p.V619V|EEF1D_uc003yyr.2_Silent_p.V620V|EEF1D_uc003yyt.2_Silent_p.V620V|EEF1D_uc011lkk.1_Silent_p.V254V|EEF1D_uc003yys.2_Silent_p.V254V|EEF1D_uc003yyv.2_Silent_p.V230V|EEF1D_uc003yyu.2_Silent_p.V254V|EEF1D_uc011lkl.1_Silent_p.V235V	NM_001130057	NP_001123529	P29692	EF1D_HUMAN	eukaryotic translation elongation factor 1 delta	254					positive regulation of I-kappaB kinase/NF-kappaB cascade	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|signal transducer activity|translation elongation factor activity			ovary(1)|kidney(1)|skin(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.239)			AGTCTGTCCCCACCTTGTCGT	0.632			NA											17	24					1.5739e-10	2.42797e-10	0.004007	1	0
CPSF1	29894	broad.mit.edu	37	8	145622131	145622131	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:145622131T>C	uc003zcj.2	-	24	2681	c.2606A>G	c.(2605-2607)CAA>CGA	p.Q869R		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	869					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			AAGCAGCTCTTGGTCCACATG	0.498	NSCLC(133;1088 1848 27708 34777 35269)		NA											11	12					0	0	0.001368	0	0
TMED10P1	286102	broad.mit.edu	37	8	146220657	146220657	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:146220657G>C	uc003zey.2	+	1	407	c.386G>C	c.(385-387)GGA>GCA	p.G129A	ZNF252_uc003zew.3_Intron|ZNF252_uc011llo.1_Intron	NR_002807				Homo sapiens mRNA for Tmp21-II putative transcribed pseudogene.												0						ATGAAGCATGGAGTGGAGGTG	0.418			NA											6	34					0	0	0.001168	0	0
DMRT2	10655	broad.mit.edu	37	9	1057240	1057240	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:1057240G>A	uc003zha.2	+	4	1853	c.1653G>A	c.(1651-1653)AGG>AGA	p.R551R	DMRT2_uc003zgx.3_Silent_p.R318R|DMRT2_uc010mgz.2_Silent_p.R318R|DMRT2_uc003zgy.3_Silent_p.R395R|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Silent_p.R551R	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	551					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		TTCTTAAGAGGCCTTCATCTG	0.398			NA											15	37					0	0	0.004007	0	0
INSL4	3641	broad.mit.edu	37	9	5233662	5233662	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:5233662T>C	uc003ziy.2	+	2	310	c.205T>C	c.(205-207)TCA>CCA	p.S69P		NM_002195	NP_002186	Q14641	INSL4_HUMAN	insulin-like 4 precursor	69					cell proliferation|cell-cell signaling|female pregnancy|multicellular organismal development|signal transduction	extracellular space|soluble fraction	hormone activity|insulin-like growth factor receptor binding				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.14)		AGAAATGGTGTCAACCTCCAA	0.403			NA											14	21					0	0	0.001855	0	0
RLN2	6019	broad.mit.edu	37	9	5300235	5300235	+	Missense_Mutation	SNP	C	C	A	rs61738985	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:5300235C>A	uc003zja.1	-	2	421	c.421G>T	c.(421-423)GCA>TCA	p.A141S	RLN2_uc003ziz.1_3'UTR	NM_134441	NP_604390	P04090	REL2_HUMAN	relaxin 2 isoform 1 preproprotein	141					female pregnancy	extracellular region	hormone activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.0201)|Lung(218;0.0987)		CTGCTGTCTGCGGCTTCACTT	0.368			NA											13	80					7.03913e-09	1.02453e-08	0.001368	1	0
PTPRD	5789	broad.mit.edu	37	9	8521291	8521291	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:8521291T>C	uc003zkk.2	-	19	1658	c.947A>G	c.(946-948)CAG>CGG	p.Q316R	PTPRD_uc003zkp.2_Missense_Mutation_p.Q316R|PTPRD_uc003zkq.2_Missense_Mutation_p.Q316R|PTPRD_uc003zkr.2_Missense_Mutation_p.Q310R|PTPRD_uc003zks.2_Missense_Mutation_p.Q306R|PTPRD_uc003zkl.2_Missense_Mutation_p.Q316R|PTPRD_uc003zkm.2_Missense_Mutation_p.Q303R|PTPRD_uc003zkn.2_Missense_Mutation_p.Q316R|PTPRD_uc003zko.2_Missense_Mutation_p.Q313R	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	316	Extracellular (Potential).|Ig-like C2-type 3.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GACAGTGATCTGTGCTATTGC	0.418			NA								TSP Lung(15;0.13)			10	41					0	0	0.006214	0	0
C9orf93	203238	broad.mit.edu	37	9	15971664	15971664	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:15971664G>A	uc003zmd.2	+	26	4126	c.3811G>A	c.(3811-3813)GAC>AAC	p.D1271N	C9orf93_uc003zme.2_Missense_Mutation_p.D1186N|C9orf93_uc011lmu.1_Missense_Mutation_p.D1279N	NM_173550	NP_775821	Q6TFL3	CI093_HUMAN	hypothetical protein LOC203238	1271											0				GBM - Glioblastoma multiforme(50;4.84e-07)		TCTTCCTGCTGACACAACTGG	0.368			NA											18	113					0	0	0.007413	0	0
IFNA7	3444	broad.mit.edu	37	9	21201913	21201913	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:21201913G>A	uc003zop.1	-	1	292	c.252C>T	c.(250-252)ATC>ATT	p.I84I	IFNA14_uc003zoo.1_Intron	NM_021057	NP_066401	P01567	IFNA7_HUMAN	interferon, alpha 7 precursor	84					blood coagulation|cell-cell signaling|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0				GBM - Glioblastoma multiforme(5;4.75e-197)|Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		AGGTCTGCTGGATCATCTCAT	0.478			NA											22	148					0	0	0.003954	0	0
IFNK	56832	broad.mit.edu	37	9	27524686	27524686	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:27524686C>A	uc003zqp.2	+	1	375	c.352C>A	c.(352-354)CTT>ATT	p.L118I	MOBKL2B_uc003zqn.2_Intron	NM_020124	NP_064509	Q9P0W0	IFNK_HUMAN	interferon kappa precursor	118	Potential.				cytokine-mediated signaling pathway|defense response|natural killer cell activation|negative regulation of cell proliferation|positive regulation of innate immune response|regulation of transcription, DNA-dependent|response to virus	extracellular space	cytokine activity|interferon-alpha/beta receptor binding				0		all_neural(11;7.9e-11)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.000158)		CCAAATAGGACTTGATCAGCA	0.408			NA											17	146					1.01871e-10	1.57581e-10	0.008871	1	0
C9orf72	203228	broad.mit.edu	37	9	27548256	27548256	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:27548256C>A	uc003zqq.2	-	11	1521	c.1424G>T	c.(1423-1425)CGA>CTA	p.R475L		NM_018325	NP_060795	Q96LT7	CI072_HUMAN	hypothetical protein LOC203228 isoform a	475										ovary(3)|central_nervous_system(1)	4		all_neural(11;7.57e-10)		LUSC - Lung squamous cell carcinoma(38;0.0001)|Lung(218;0.00016)		TAGAACATCTCGTTCTTGCAC	0.403			NA											23	21					1.10513e-12	1.81519e-12	0.002299	1	0
LINGO2	158038	broad.mit.edu	37	9	27949889	27949889	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:27949889G>T	uc003zqu.1	-	2	975	c.781C>A	c.(781-783)CTG>ATG	p.L261M	LINGO2_uc010mjf.1_Missense_Mutation_p.L261M|LINGO2_uc003zqv.1_Missense_Mutation_p.L261M	NM_152570	NP_689783	Q7L985	LIGO2_HUMAN	leucine rich repeat and Ig domain containing 2	261	LRR 9.|Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	Melanoma(11;0.242)	all_neural(11;2.78e-09)		UCEC - Uterine corpus endometrioid carcinoma (5;0.0818)|GBM - Glioblastoma multiforme(2;1.31e-34)|all cancers(2;2.37e-25)|Lung(2;7.48e-08)|LUSC - Lung squamous cell carcinoma(38;5.09e-07)|KIRC - Kidney renal clear cell carcinoma(2;0.0465)|Kidney(2;0.0604)		ACAGTAGACAGATTGGTGTTG	0.463			NA											26	183					1.42536e-11	2.26458e-11	0.004656	1	0
NFX1	4799	broad.mit.edu	37	9	33364755	33364755	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:33364755G>A	uc003zsq.2	+	21	3083	c.3022G>A	c.(3022-3024)GTG>ATG	p.V1008M	SUGT1P1_uc010mjq.1_Intron|NFX1_uc003zsp.1_Missense_Mutation_p.V1008M|NFX1_uc010mjr.1_Missense_Mutation_p.V1009M|NFX1_uc003zsr.2_Missense_Mutation_p.V1009M	NM_002504	NP_002495	Q12986	NFX1_HUMAN	nuclear transcription factor, X-box binding 1	1008	R3H.				inflammatory response|interspecies interaction between organisms|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	DNA binding|ligase activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(29;0.00506)	GBM - Glioblastoma multiforme(74;0.224)		GGAAACCCTCGTGGAGGCCGT	0.423			NA											4	29					0	0	0.001168	0	0
VCP	7415	broad.mit.edu	37	9	35065277	35065277	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:35065277G>A	uc003zvy.2	-	5	936	c.547C>T	c.(547-549)CAC>TAC	p.H183Y	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_5'UTR|VCP_uc010mki.1_Missense_Mutation_p.H138Y	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	183					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			CCTTCGCAGTGGATCACTGTG	0.473			NA											19	42					0	0	0.007413	0	0
RECK	8434	broad.mit.edu	37	9	36117143	36117143	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:36117143G>T	uc003zyv.2	+	17	2308	c.2222G>T	c.(2221-2223)GGA>GTA	p.G741V	RECK_uc003zyw.2_Missense_Mutation_p.G613V|RECK_uc003zyx.2_RNA	NM_021111	NP_066934	O95980	RECK_HUMAN	RECK protein precursor	741	Kazal-like 2.					anchored to membrane|peripheral to membrane of membrane fraction|plasma membrane	metalloendopeptidase inhibitor activity|serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)	3			LUSC - Lung squamous cell carcinoma(32;0.112)|STAD - Stomach adenocarcinoma(86;0.228)			TACCAAAGAGGAAAAAGCCTC	0.438			NA											7	28					5.18039e-06	6.58689e-06	0.00308	1	0
MELK	9833	broad.mit.edu	37	9	36633107	36633107	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:36633107A>T	uc003zzn.2	+	10	882	c.744A>T	c.(742-744)CCA>CCT	p.P248P	MELK_uc011lpm.1_Silent_p.P117P|MELK_uc011lpn.1_Silent_p.P248P|MELK_uc011lpo.1_Silent_p.P54P|MELK_uc010mll.2_Silent_p.P216P|MELK_uc011lpp.1_Silent_p.P200P|MELK_uc010mlm.2_Silent_p.P177P|MELK_uc011lpq.1_Silent_p.P54P|MELK_uc011lpr.1_Silent_p.P177P|MELK_uc011lps.1_Silent_p.P168P	NM_014791	NP_055606	Q14680	MELK_HUMAN	maternal embryonic leucine zipper kinase	248	Protein kinase.					cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6		Acute lymphoblastic leukemia(2;1.09e-08)|all_hematologic(2;8.15e-06)	STAD - Stomach adenocarcinoma(86;0.228)			AGGTGGACCCAAAGAAACGGA	0.363	Ovarian(82;980 1317 7225 14391 18624)		NA											19	42					0	0	0.006122	0	0
TRPM3	80036	broad.mit.edu	37	9	73255569	73255569	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:73255569A>T	uc004aid.2	-	10	1597	c.1353T>A	c.(1351-1353)AAT>AAA	p.N451K	TRPM3_uc004ahu.2_Missense_Mutation_p.N281K|TRPM3_uc004ahv.2_Missense_Mutation_p.N281K|TRPM3_uc004ahw.2_Missense_Mutation_p.N323K|TRPM3_uc004ahx.2_Missense_Mutation_p.N298K|TRPM3_uc004ahy.2_Missense_Mutation_p.N323K|TRPM3_uc004ahz.2_Missense_Mutation_p.N298K|TRPM3_uc004aia.2_Missense_Mutation_p.N298K|TRPM3_uc004aib.2_Missense_Mutation_p.N298K|TRPM3_uc004aic.2_Missense_Mutation_p.N451K|TRPM3_uc010mor.2_Missense_Mutation_p.N451K	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	476	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GGGCCGAGGCATTGGCTCCTG	0.522			NA									OREG0019249	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	11					0	0	0.004672	0	0
TRPM3	80036	broad.mit.edu	37	9	73442800	73442800	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:73442800T>C	uc004aid.2	-	6	1180	c.936A>G	c.(934-936)CAA>CAG	p.Q312Q	TRPM3_uc004ahu.2_Silent_p.Q142Q|TRPM3_uc004ahv.2_Silent_p.Q142Q|TRPM3_uc004ahw.2_Silent_p.Q159Q|TRPM3_uc004ahx.2_Silent_p.Q159Q|TRPM3_uc004ahy.2_Silent_p.Q159Q|TRPM3_uc004ahz.2_Silent_p.Q159Q|TRPM3_uc004aia.2_Silent_p.Q159Q|TRPM3_uc004aib.2_Silent_p.Q159Q|TRPM3_uc004aic.2_Silent_p.Q312Q|TRPM3_uc010mor.2_Silent_p.Q312Q|TRPM3_uc004aie.2_Silent_p.Q159Q|TRPM3_uc004aif.2_Silent_p.Q159Q|TRPM3_uc004aig.2_Silent_p.Q159Q|TRPM3_uc004aii.2_Silent_p.Q314Q	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	312	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						GCTTTTCCAGTTGTCTTCGAA	0.448			NA											20	71					0	0	0.010504	0	0
PRUNE2	158471	broad.mit.edu	37	9	79325548	79325548	+	Missense_Mutation	SNP	T	T	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:79325548T>G	uc010mpk.2	-	8	1766	c.1642A>C	c.(1642-1644)AAT>CAT	p.N548H		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	548					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						GATGAATAATTAGACATGTTG	0.502			NA											8	11					0	0	0.00308	0	0
FOXB2	442425	broad.mit.edu	37	9	79635203	79635203	+	Silent	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:79635203G>C	uc004ako.1	+	1	633	c.633G>C	c.(631-633)CCG>CCC	p.P211P		NM_001013735	NP_001013757	Q5VYV0	FOXB2_HUMAN	forkhead box B2	211					brain development|embryo development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						CTCAGCAGCCGTCTCACCCCG	0.502			NA											3	6					0	0	0.004672	0	0
FLJ46321	389763	broad.mit.edu	37	9	84607054	84607054	+	Missense_Mutation	SNP	A	A	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:84607054A>C	uc004amn.2	+	4	1716	c.1669A>C	c.(1669-1671)AGT>CGT	p.S557R		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	557						integral to membrane					0						GTCCTTGCCTAGTACCCAACC	0.512			NA											21	57					0	0	0.00278	0	0
C9orf79	286234	broad.mit.edu	37	9	90500556	90500556	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:90500556G>A	uc004app.3	+	4	1189	c.1154G>A	c.(1153-1155)CGG>CAG	p.R385Q	C9orf79_uc004apo.1_Missense_Mutation_p.R197Q	NM_178828	NP_849150	Q6ZUB1	CI079_HUMAN	chromosome 9 open reading frame 79	385						integral to membrane				ovary(3)	3						GAAAGAAAACGGGCCGACCAC	0.572			NA											10	44					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	9	90744806	90744806	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:90744806C>T	uc011lti.1	-	4	3175	c.3146G>A	c.(3145-3147)AGT>AAT	p.S1049N	uc004apx.1_5'Flank					SubName: Full=cDNA FLJ59639;												NA						AGCTTCAGCACTGCTGCCGTA	0.463			NA											27	62					0	0	0.009535	0	0
ZNF484	83744	broad.mit.edu	37	9	95608877	95608877	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:95608877T>C	uc004asu.1	-	5	2341	c.2192A>G	c.(2191-2193)CAG>CGG	p.Q731R	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.Q733R|ZNF484_uc010mrb.1_Missense_Mutation_p.Q695R|ZNF484_uc004asv.1_Missense_Mutation_p.Q695R	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	731	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGTGACTTCTGGATGAAGGA	0.378			NA											11	33					0	0	0.008291	0	0
BAAT	570	broad.mit.edu	37	9	104133520	104133520	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:104133520C>A	uc010mtd.2	-	2	276	c.167G>T	c.(166-168)GGT>GTT	p.G56V	BAAT_uc004bbd.3_Missense_Mutation_p.G56V	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	56					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	GTCCACCTCACCGAATTCATT	0.463			NA											13	37					2.68362e-12	4.34905e-12	0.001368	1	0
GRIN3A	116443	broad.mit.edu	37	9	104448970	104448970	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:104448970G>T	uc004bbp.1	-	2	1813	c.1212C>A	c.(1210-1212)ACC>ACA	p.T404T	GRIN3A_uc004bbq.1_Silent_p.T404T	NM_133445	NP_597702	Q8TCU5	NMD3A_HUMAN	glutamate receptor, ionotropic,	404	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|neuron projection|neuronal cell body|outer membrane-bounded periplasmic space|postsynaptic density|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|glycine binding|identical protein binding|N-methyl-D-aspartate selective glutamate receptor activity|protein phosphatase 2A binding			ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7		Acute lymphoblastic leukemia(62;0.0568)			Acamprosate(DB00659)|Chloroprocaine(DB01161)|Dextromethorphan(DB00514)|Ethanol(DB00898)|Ethopropazine(DB00392)|Felbamate(DB00949)|Ketamine(DB01221)|L-Glutamic Acid(DB00142)|Memantine(DB01043)|Meperidine(DB00454)|Methadone(DB00333)|Orphenadrine(DB01173)|Procaine(DB00721)|Riluzole(DB00740)	GTTGGATCATGGTGGCTGTGG	0.468			NA											19	30					2.35188e-11	3.71235e-11	0.006122	1	0
SVEP1	79987	broad.mit.edu	37	9	113169173	113169173	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:113169173C>A	uc010mtz.2	-	38	9044	c.8707G>T	c.(8707-8709)GAA>TAA	p.E2903*	SVEP1_uc010mty.2_Nonsense_Mutation_p.E829*	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2903	Sushi 25.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TCCAGGCCTTCCGTCACCCCA	0.552			NA											12	43					1.08611e-07	1.49384e-07	0.010729	1	0
SVEP1	79987	broad.mit.edu	37	9	113217973	113217973	+	Silent	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:113217973A>G	uc010mtz.2	-	22	4021	c.3684T>C	c.(3682-3684)TGT>TGC	p.C1228C	SVEP1_uc010mua.1_Silent_p.C1228C	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1228	EGF-like 1.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						TGTCTGTTTCACACTTTAAGC	0.403			NA											5	11					0	0	0.000602	0	0
BSPRY	54836	broad.mit.edu	37	9	116132008	116132008	+	Silent	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:116132008C>T	uc004bhg.3	+	6	843	c.795C>T	c.(793-795)GGC>GGT	p.G265G	BSPRY_uc010muw.2_3'UTR	NM_017688	NP_060158	Q5W0U4	BSPRY_HUMAN	B-box and SPRY domain containing	265	B30.2/SPRY.				calcium ion transport	cytoplasm|membrane	zinc ion binding			breast(1)	1						GTGCAGATGGCCCGGAGCGCT	0.557			NA											14	37					0	0	0.00245	0	0
LHX6	26468	broad.mit.edu	37	9	124976256	124976256	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:124976256G>T	uc010mvw.2	-	6	898	c.789C>A	c.(787-789)ATC>ATA	p.I263I	LHX6_uc004blx.3_Silent_p.I292I|LHX6_uc004bly.3_Silent_p.I292I	NM_014368	NP_055183	Q9UPM6	LHX6_HUMAN	LIM homeobox protein 6 isoform 1	263	Homeobox.				cell maturation|cerebral cortex GABAergic interneuron migration|cerebral cortex radially oriented cell migration|cerebral cortex tangential migration	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GTCCCACCTGGATGACTCTCC	0.716			NA											4	13					0.00024832	0.000286393	0.009096	1	0
TOR1B	27348	broad.mit.edu	37	9	132569606	132569606	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:132569606G>C	uc004byk.1	+	3	665	c.605G>C	c.(604-606)GGA>GCA	p.G202A		NM_014506	NP_055321	O14657	TOR1B_HUMAN	torsin family 1, member B (torsin B) precursor	202					chaperone mediated protein folding requiring cofactor|response to unfolded protein	endoplasmic reticulum lumen	ATP binding|nucleoside-triphosphatase activity|unfolded protein binding				0		Ovarian(14;0.0586)				CAGGTTGACGGAGTGTCTTAC	0.473			NA											34	94					0	0	0.003755	0	0
C9orf171	389799	broad.mit.edu	37	9	135357749	135357749	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:135357749C>T	uc004cbn.2	+	2	296	c.248C>T	c.(247-249)GCG>GTG	p.A83V	C9orf171_uc004cbo.2_Intron	NM_207417	NP_997300	Q6ZQR2	CI171_HUMAN	hypothetical protein LOC389799	83										ovary(4)|large_intestine(1)	5						GACTCCTCAGCGGTGCAGAAA	0.493			NA											14	25					0	0	0.003163	0	0
C9orf98	158067	broad.mit.edu	37	9	135739083	135739083	+	Missense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:135739083G>C	uc004cbu.1	-	4	858	c.302C>G	c.(301-303)ACC>AGC	p.T101S	C9orf98_uc010mzx.1_RNA|C9orf98_uc004cbv.1_5'UTR	NM_152572	NP_689785	Q96MA6	KAD8_HUMAN	putative adenylate kinase-like protein C9orf98	101						cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity				0				OV - Ovarian serous cystadenocarcinoma(145;4.89e-06)|Epithelial(140;0.00016)		TCTGGCTTCGGTGGCCGTATA	0.542			NA											8	29					0	0	0.004482	0	0
DBH	1621	broad.mit.edu	37	9	136501680	136501680	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:136501680T>C	uc004cel.2	+	1	196	c.187T>C	c.(187-189)TGG>CGG	p.W63R		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	63	DOMON.|Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	GGAGCTCTCATGGAATGTCAG	0.652			NA											3	14					0	0	0.009096	0	0
COL5A1	1289	broad.mit.edu	37	9	137660255	137660255	+	Splice_Site	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:137660255G>T	uc004cfe.2	+	25	2615	c.2233_splice	c.e25-1	p.G745_splice		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein						axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		GTTTGTTCTAGGGTCCCTTGG	0.597			NA											24	45					1.64293e-13	2.7436e-13	0.00333	1	0
FCN2	2220	broad.mit.edu	37	9	137779182	137779182	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:137779182C>G	uc004cfg.1	+	8	873	c.863C>G	c.(862-864)GCA>GGA	p.A288G	FCN2_uc004cfh.1_Missense_Mutation_p.A250G	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	288	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		GGCAGCTTTGCAAATGGCATC	0.517			NA											11	30					0	0	0.008291	0	0
ABCA2	20	broad.mit.edu	37	9	139911094	139911094	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:139911094C>A	uc011mem.1	-	19	3000	c.2852G>T	c.(2851-2853)TGG>TTG	p.W951L	ABCA2_uc011mel.1_Missense_Mutation_p.W952L|ABCA2_uc004ckl.1_Missense_Mutation_p.W882L|ABCA2_uc004ckm.1_Missense_Mutation_p.W982L|ABCA2_uc004ckn.1_RNA	NM_001606	NP_001597	Q9BZC7	ABCA2_HUMAN	ATP-binding cassette, sub-family A, member 2	951					cholesterol homeostasis|lipid metabolic process|regulation of intracellular cholesterol transport|regulation of transcription from RNA polymerase II promoter|response to drug|response to steroid hormone stimulus	ATP-binding cassette (ABC) transporter complex|cytoplasmic membrane-bounded vesicle|endosome|integral to membrane|microtubule organizing center	ATP binding|ATPase activity, coupled to transmembrane movement of substances				0	all_cancers(76;0.16)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GGTGCGTGCCCACGGCCAGCT	0.672			NA											8	23					0.000157383	0.000182879	0.00308	1	0
EHMT1	79813	broad.mit.edu	37	9	140671225	140671225	+	Silent	SNP	G	G	A	rs139206060		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:140671225G>A	uc011mfc.1	+	12	1984	c.1947G>A	c.(1945-1947)TCG>TCA	p.S649S	EHMT1_uc004coa.2_Silent_p.S649S|EHMT1_uc004cob.1_Silent_p.S618S	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	649					DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		ACACCACCTCGACCGTGACAC	0.627			NA											8	34					0	0	0.00308	0	0
MXRA5	25878	broad.mit.edu	37	X	3241306	3241306	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:3241306G>A	uc004crg.3	-	5	2577	c.2420C>T	c.(2419-2421)ACC>ATC	p.T807I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	807						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AGGACTTGTGGTTTTAATCAA	0.478			NA											20	33					0	0	0.012319	0	0
CLCN4	1183	broad.mit.edu	37	X	10176261	10176261	+	Silent	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:10176261C>G	uc004csy.3	+	9	1450	c.1020C>G	c.(1018-1020)GTC>GTG	p.V340V	CLCN4_uc011mid.1_Silent_p.V246V	NM_001830	NP_001821	P51793	CLCN4_HUMAN	chloride channel 4	340	Helical; (By similarity).					early endosome membrane|integral to membrane|late endosome membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)	5						TGCTTGGGGTCTTCGGGGGCT	0.577	Melanoma(74;1050 1296 1576 30544 38374)		NA											48	62					0	0	0.00361	0	0
GRPR	2925	broad.mit.edu	37	X	16170424	16170424	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:16170424G>T	uc004cxj.2	+	3	1464	c.811G>T	c.(811-813)GGC>TGC	p.G271C		NM_005314	NP_005305	P30550	GRPR_HUMAN	gastrin-releasing peptide receptor	271	Helical; Name=6; (Potential).				cell proliferation	integral to plasma membrane	bombesin receptor activity			ovary(3)|lung(1)	4	Hepatocellular(33;0.183)					GGTGTTTGTGGGCCTGTTCGC	0.532			NA											40	39					1.96642e-18	3.55251e-18	0.006999	1	0
BEND2	139105	broad.mit.edu	37	X	18189297	18189297	+	Missense_Mutation	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:18189297A>T	uc004cyj.3	-	13	2163	c.2009T>A	c.(2008-2010)ATA>AAA	p.I670K	BEND2_uc010nfb.2_Missense_Mutation_p.I579K	NM_153346	NP_699177	Q8NDZ0	BEND2_HUMAN	BEN domain containing 2	670	BEN 2.									ovary(3)|kidney(1)|central_nervous_system(1)	5						TGGCATCCGTATATTTCTCCA	0.363			NA											14	54					0	0	0.001855	0	0
SCML2	10389	broad.mit.edu	37	X	18276333	18276333	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:18276333G>A	uc004cyl.2	-	10	1261	c.1104C>T	c.(1102-1104)GGC>GGT	p.G368G	SCML2_uc004cyk.3_RNA|SCML2_uc010nfd.1_Silent_p.G368G|SCML2_uc011miz.1_Silent_p.G302G|SCML2_uc010nfc.2_Silent_p.G104G	NM_006089	NP_006080	Q9UQR0	SCML2_HUMAN	sex comb on midleg-like 2	368					anatomical structure morphogenesis	PcG protein complex	DNA binding|sequence-specific DNA binding transcription factor activity				0	Hepatocellular(33;0.183)					CCAGATGAGGGCCAAAGTTTC	0.463	Esophageal Squamous(100;1252 1965 19021 35517)		NA											16	53					0	0	0.003163	0	0
MAGEB18	286514	broad.mit.edu	37	X	26157881	26157881	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:26157881C>A	uc004dbq.1	+	2	966	c.779C>A	c.(778-780)CCC>CAC	p.P260H		NM_173699	NP_775970	Q96M61	MAGBI_HUMAN	melanoma antigen family B, 18	260	MAGE.						protein binding			central_nervous_system(1)	1						CAGCAAGTGCCCAACAGTGAT	0.488			NA											11	30					1.08611e-07	1.49384e-07	0.010729	1	0
MAGEB4	4115	broad.mit.edu	37	X	30261205	30261205	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:30261205G>A	uc004dcb.2	+	1	1037	c.953G>A	c.(952-954)CGG>CAG	p.R318Q	MAGEB1_uc004dcc.2_5'Flank|MAGEB1_uc004dcd.2_5'Flank	NM_002367	NP_002358	O15481	MAGB4_HUMAN	melanoma antigen family B, 4	318										ovary(1)	1						GCTGGAGCCCGGCCCAGAGTT	0.532			NA											12	17					0	0	0.010729	0	0
FAM47B	170062	broad.mit.edu	37	X	34961513	34961513	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:34961513C>A	uc004ddi.1	+	1	583	c.565C>A	c.(565-567)CCG>ACG	p.P189T		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	189	Pro-rich.									ovary(3)|breast(1)	4						GGAATCCTGCCCGCGGCCTCC	0.647			NA											11	19					1.58986e-06	2.08065e-06	0.008291	1	0
FAM47B	170062	broad.mit.edu	37	X	34962866	34962866	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:34962866G>T	uc004ddi.1	+	1	1936	c.1918G>T	c.(1918-1920)GAT>TAT	p.D640Y		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	640										ovary(3)|breast(1)	4						AGACGTCACAGATGCATCAAA	0.383			NA											25	24					9.86323e-18	1.77434e-17	0.003954	1	0
CXorf22	170063	broad.mit.edu	37	X	35971832	35971832	+	Missense_Mutation	SNP	C	C	G	rs137975595	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:35971832C>G	uc004ddj.2	+	7	1229	c.1170C>G	c.(1168-1170)ATC>ATG	p.I390M	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	390										large_intestine(1)|lung(1)|ovary(1)	3						ATAAAACCATCAAAAGTAAGT	0.294			NA											5	13					0	0	0.000602	0	0
CXorf22	170063	broad.mit.edu	37	X	36007542	36007542	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:36007542G>T	uc004ddj.2	+	16	2879	c.2820G>T	c.(2818-2820)GCG>GCT	p.A940A	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	940										large_intestine(1)|lung(1)|ovary(1)	3						AAGGAAACGCGTTGAAGCTAA	0.373			NA											8	14					1.12685e-05	1.40753e-05	0.004482	1	0
ZNF157	7712	broad.mit.edu	37	X	47269737	47269737	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:47269737C>A	uc004dhr.1	+	2	204	c.135C>A	c.(133-135)GAC>GAA	p.D45E		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	45	KRAB.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						ACAGACTGGACCCTGCTCAGA	0.527			NA											24	42					5.35356e-11	8.33429e-11	0.00278	1	0
ZNF41	7592	broad.mit.edu	37	X	47308150	47308150	+	Nonsense_Mutation	SNP	G	G	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:47308150G>C	uc004dhs.3	-	4	1212	c.1145C>G	c.(1144-1146)TCA>TGA	p.S382*	ZNF41_uc004dhu.3_Nonsense_Mutation_p.S374*|ZNF41_uc004dht.3_Nonsense_Mutation_p.S254*|ZNF41_uc004dhv.3_Nonsense_Mutation_p.S350*|ZNF41_uc004dhw.3_Nonsense_Mutation_p.S342*|ZNF41_uc004dhy.3_Nonsense_Mutation_p.S340*|ZNF41_uc004dhx.3_Nonsense_Mutation_p.S340*|ZNF41_uc011mlm.1_Nonsense_Mutation_p.S254*	NM_153380	NP_700359	P51814	ZNF41_HUMAN	zinc finger protein 41	382	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3		all_lung(315;0.000129)				AATGAGGTTTGATTTGAGGGT	0.413			NA											23	53					0	0	0.00278	0	0
ARAF	369	broad.mit.edu	37	X	47424443	47424443	+	Silent	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:47424443T>C	uc011mlq.1	+	5	496	c.363T>C	c.(361-363)CAT>CAC	p.H121H	ARAF_uc011mln.1_RNA|ARAF_uc011mlo.1_Missense_Mutation_p.M1T|ARAF_uc011mlp.1_Silent_p.H121H|ARAF_uc004dic.1_5'Flank	NM_001654	NP_001645	P10398	ARAF_HUMAN	v-raf murine sarcoma 3611 viral oncogene	121	Phorbol-ester/DAG-type.				intracellular signal transduction|negative regulation of apoptosis|positive regulation of peptidyl-serine phosphorylation		ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity			large_intestine(3)|lung(2)|ovary(1)|skin(1)	7					Adenosine triphosphate(DB00171)	TTCTGTTCCATGGCTTCCGTT	0.522			NA											14	47					0	0	0.00499	0	0
FAM120C	54954	broad.mit.edu	37	X	54161386	54161386	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:54161386G>A	uc004dsz.3	-	7	1577	c.1494C>T	c.(1492-1494)TCC>TCT	p.S498S	FAM120C_uc011moh.1_Silent_p.S498S	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	498										ovary(1)|central_nervous_system(1)	2						AAGAGTCATAGGAGACAGCCC	0.512			NA											4	11					0	0	0.009096	0	0
SLC16A2	6567	broad.mit.edu	37	X	73641730	73641730	+	Silent	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:73641730C>A	uc004ebt.2	+	1	646	c.480C>A	c.(478-480)CGC>CGA	p.R160R		NM_006517	NP_006508	P36021	MOT8_HUMAN	solute carrier family 16, member 2	86	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			breast(2)|ovary(1)	3					Pyruvic acid(DB00119)	TAGAGACCCGCGGCACCGCGC	0.632			NA											11	14					6.40141e-05	7.65288e-05	0.010729	1	0
KIAA2022	340533	broad.mit.edu	37	X	73961331	73961331	+	Missense_Mutation	SNP	C	C	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:73961331C>T	uc004eby.2	-	3	3678	c.3061G>A	c.(3061-3063)GAT>AAT	p.D1021N		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1021					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCAGTGATATCATCATCGCCA	0.478			NA											18	49					0	0	0.007413	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74644564	74644564	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:74644564G>T	uc004ecg.2	-	8	1137	c.659C>A	c.(658-660)GCC>GAC	p.A220D	ZDHHC15_uc004ech.2_Missense_Mutation_p.A211D|ZDHHC15_uc011mqo.1_RNA	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	220	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(2)	2						AAACATGCAGGCCACAAAGAG	0.383			NA											4	4					0.00909568	0.00964006	0.009096	1	0
ATRX	546	broad.mit.edu	37	X	76939494	76939494	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:76939494T>A	uc004ecp.3	-	9	1486	c.1254A>T	c.(1252-1254)CGA>CGT	p.R418R	ATRX_uc004ecq.3_Silent_p.R380R|ATRX_uc004eco.3_Silent_p.R203R|ATRX_uc004ecr.2_Silent_p.R379R|ATRX_uc010nlx.1_Silent_p.R418R|ATRX_uc010nly.1_Silent_p.R363R	NM_000489	NP_000480	P46100	ATRX_HUMAN	transcriptional regulator ATRX isoform 1	418					DNA methylation|DNA recombination|DNA repair|regulation of transcription, DNA-dependent	nuclear heterochromatin	ATP binding|chromo shadow domain binding|DNA binding|DNA helicase activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(14)|pancreas(12)|lung(1)|breast(1)|skin(1)|kidney(1)	30					Phosphatidylserine(DB00144)	CATCCATCGCTCGAAACTCGG	0.373			NA	Mis|F|N		Pancreatic neuroendocrine tumors		ATR-X (alpha thalassemia/mental retardation) syndrome						59	87					0	0	0.00361	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77913726	77913726	+	Silent	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:77913726G>T	uc004edc.1	-	2	488	c.192C>A	c.(190-192)CTC>CTA	p.L64L		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	64	Pro-rich.						nucleic acid binding|zinc ion binding			ovary(1)	1						TGTGCTCTGGGAGCTTCTGGG	0.587			NA											6	15					8.12818e-05	9.60912e-05	0.001984	1	0
BRWD3	254065	broad.mit.edu	37	X	79999660	79999660	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:79999660C>A	uc004edt.2	-	8	947	c.684G>T	c.(682-684)ATG>ATT	p.M228I	BRWD3_uc004edo.2_5'UTR|BRWD3_uc004edp.2_Missense_Mutation_p.M57I|BRWD3_uc004edq.2_5'UTR|BRWD3_uc010nmj.1_5'UTR|BRWD3_uc004edr.2_5'UTR|BRWD3_uc004eds.2_5'UTR|BRWD3_uc004edu.2_5'UTR|BRWD3_uc004edv.2_5'UTR|BRWD3_uc004edw.2_5'UTR|BRWD3_uc004edx.2_5'UTR|BRWD3_uc004edy.2_5'UTR|BRWD3_uc004edz.2_5'UTR|BRWD3_uc004eea.2_5'UTR|BRWD3_uc004eeb.2_Intron	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	228	WD 3.									ovary(4)	4						AGTTAACAGCCATGTCAGAAA	0.438			NA											18	32					1.45105e-14	2.49928e-14	0.006122	1	0
Unknown	0	broad.mit.edu	37	X	80185344	80185344	+	Silent	SNP	A	A	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:80185344A>T	uc004eec.1	+	1	417	c.243A>T	c.(241-243)ACA>ACT	p.T81T						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;												NA						AAATCAAGACAGGGTACAAGC	0.507			NA											5	35					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	X	80185699	80185699	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:80185699G>T	uc004eec.1	+	1	772	c.598G>T	c.(598-600)GCT>TCT	p.A200S						SubName: Full=cDNA FLJ16670 fis, clone THYMU3001133, highly similar to Voltage-dependent anion-selective channel protein 1; SubName: Full=Voltage-dependent anion channel 1, isoform CRA_a;												NA						CTGCTTCTCGGCTAAAGTGAA	0.498			NA											20	43					3.51602e-12	5.67099e-12	0.008871	1	0
SATL1	340562	broad.mit.edu	37	X	84349161	84349161	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:84349161C>A	uc011mqx.1	-	4	1849	c.1849G>T	c.(1849-1851)GAC>TAC	p.D617Y	SATL1_uc004een.2_Missense_Mutation_p.D617Y	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	430	N-acetyltransferase.						N-acetyltransferase activity			breast(2)	2						ACATAAAAGTCCTCTAGGTAA	0.353			NA											5	31					5.9392e-07	7.92515e-07	0.001168	1	0
ZNF711	7552	broad.mit.edu	37	X	84520185	84520185	+	Silent	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:84520185T>A	uc004eeo.2	+	6	1187	c.840T>A	c.(838-840)CTT>CTA	p.L280L	ZNF711_uc004eep.2_Silent_p.L280L|ZNF711_uc004eeq.2_Silent_p.L280L|ZNF711_uc011mqy.1_5'UTR	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	280					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						CTGGAGTGCTTGACCAGAGCC	0.398			NA											4	20					0	0	0.000602	0	0
POF1B	79983	broad.mit.edu	37	X	84585958	84585958	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:84585958C>A	uc004eer.2	-	7	997	c.851G>T	c.(850-852)GGA>GTA	p.G284V	POF1B_uc004ees.2_Missense_Mutation_p.G284V	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	284							actin binding				0						ACAGTACCTTCCTCCAATTCT	0.358			NA											4	26					0.00909568	0.00964006	0.009096	1	0
KLHL4	56062	broad.mit.edu	37	X	86880684	86880684	+	Missense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:86880684G>A	uc004efb.2	+	6	1394	c.1212G>A	c.(1210-1212)ATG>ATA	p.M404I	KLHL4_uc004efa.2_Missense_Mutation_p.M404I	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	404						cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TGGAAGCTATGAAGTATCATC	0.443			NA											7	28					0	0	0.00308	0	0
TGIF2LX	90316	broad.mit.edu	37	X	89177226	89177226	+	Nonsense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:89177226G>T	uc004efe.2	+	2	191	c.142G>T	c.(142-144)GAG>TAG	p.E48*		NM_138960	NP_620410	Q8IUE1	TF2LX_HUMAN	TGFB-induced factor homeobox 2-like, X-linked	48	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TGCCTTACCAGAGCACAAGAA	0.517			NA											4	30					0.00909568	0.00964006	0.009096	1	0
PCDH11X	27328	broad.mit.edu	37	X	91873836	91873836	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:91873836G>T	uc004efk.1	+	7	4786	c.3941G>T	c.(3940-3942)AGT>ATT	p.S1314I	PCDH11X_uc004efl.1_Missense_Mutation_p.S1304I|PCDH11X_uc004efo.1_Missense_Mutation_p.S1277I|PCDH11X_uc010nmv.1_3'UTR|PCDH11X_uc004efm.1_Missense_Mutation_p.S1306I|PCDH11X_uc004efn.1_Missense_Mutation_p.S1296I	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	1314	Cytoplasmic (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CTTCATCCCAGTGATGATTCA	0.483	NSCLC(38;925 1092 2571 38200 45895)		NA											15	101					2.98522e-18	5.38733e-18	0.003163	1	0
ARL13A	392509	broad.mit.edu	37	X	100243431	100243431	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:100243431T>A	uc004ego.2	+	8	925	c.809T>A	c.(808-810)ATG>AAG	p.M270K	ARL13A_uc011mrf.1_Missense_Mutation_p.M270K|ARL13A_uc010nng.2_Intron	NM_001012990	NP_001013008	Q5H913	AR13A_HUMAN	ADP-ribosylation factor-like 13 isoform a	270							GTP binding			ovary(1)	1						GATGAACCCATGAAAGAAGGT	0.398			NA											4	3					0	0	0.009096	0	0
COL4A5	1287	broad.mit.edu	37	X	107929351	107929351	+	Missense_Mutation	SNP	G	G	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:107929351G>T	uc004enz.1	+	47	4509	c.4307G>T	c.(4306-4308)GGA>GTA	p.G1436V	COL4A5_uc011mso.1_Missense_Mutation_p.G1433V|COL4A5_uc011msp.1_Missense_Mutation_p.G112V	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1430	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GGTCTGCCAGGACAGCCAGGT	0.547			NA							Alport_syndrome_with_Diffuse_Leiomyomatosis				6	15					3.59834e-05	4.39136e-05	0.001168	1	0
IRS4	8471	broad.mit.edu	37	X	107976275	107976275	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:107976275G>A	uc004eoc.2	-	1	3333	c.3300C>T	c.(3298-3300)GTC>GTT	p.V1100V		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1100	Ala-rich.					plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GAAAAGCAGAGACAGCGGCTC	0.572			NA											8	90					0	0	0.00245	0	0
IRS4	8471	broad.mit.edu	37	X	107976299	107976299	+	Silent	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:107976299G>A	uc004eoc.2	-	1	3309	c.3276C>T	c.(3274-3276)TTC>TTT	p.F1092F		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1092						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						CTGCTGCAAAGAAACTTTGAG	0.582			NA											5	84					0	0	0.00245	0	0
IRS4	8471	broad.mit.edu	37	X	107976307	107976307	+	Nonsense_Mutation	SNP	G	G	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:107976307G>A	uc004eoc.2	-	1	3301	c.3268C>T	c.(3268-3270)CAA>TAA	p.Q1090*		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	1090						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						AAGAAACTTTGAGAACGGCTT	0.567			NA											5	86					0	0	0.001368	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698695	111698695	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:111698695C>A	uc004epo.1	+	3	1180	c.739C>A	c.(739-741)CCC>ACC	p.P247T		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	247							nucleic acid binding|zinc ion binding			ovary(1)	1						CCTCTTTAGCCCCACAGATCC	0.552			NA											37	63					3.76114e-14	6.41961e-14	0.004289	1	0
HTR2C	3358	broad.mit.edu	37	X	113965977	113965977	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:113965977C>A	uc004epu.1	+	4	1038	c.310C>A	c.(310-312)CTA>ATA	p.L104I	HTR2C_uc010nqc.1_Missense_Mutation_p.L104I|HTR2C_uc004epv.1_Missense_Mutation_p.L104I	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	104	Helical; Name=2; (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	GCTAGTGGGACTACTTGTCAT	0.388			NA											16	16					1.33834e-09	1.99227e-09	0.007413	1	0
GPR112	139378	broad.mit.edu	37	X	135426568	135426568	+	Missense_Mutation	SNP	A	A	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:135426568A>G	uc004ezu.1	+	6	994	c.703A>G	c.(703-705)ACA>GCA	p.T235A	GPR112_uc010nsb.1_Missense_Mutation_p.T30A|GPR112_uc010nsc.1_Missense_Mutation_p.T2A	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	235	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TGAAAATATGACAATTCAAGA	0.318			NA											5	11					0	0	0.000602	0	0
FGF13	2258	broad.mit.edu	37	X	137717645	137717645	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:137717645C>A	uc004fam.2	-	4	1236	c.574G>T	c.(574-576)GCT>TCT	p.A192S	FGF13_uc004fan.2_Missense_Mutation_p.A139S|FGF13_uc011mwi.1_Missense_Mutation_p.A173S|FGF13_uc004faq.2_Missense_Mutation_p.A202S|FGF13_uc004far.2_Missense_Mutation_p.A173S|FGF13_uc011mwj.1_Missense_Mutation_p.A202S|FGF13_uc011mwk.1_Missense_Mutation_p.A146S	NM_004114	NP_004105	Q92913	FGF13_HUMAN	fibroblast growth factor 13 isoform 1	192					cell-cell signaling|MAPKKK cascade|nervous system development	cytoplasm|nucleus	growth factor activity|protein kinase activator activity			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(192;0.000127)					AGAAAATGAGCTGCAGGCTTG	0.378			NA											18	28					1.55795e-14	2.67526e-14	0.012319	1	0
MCF2	4168	broad.mit.edu	37	X	138684576	138684576	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:138684576C>A	uc004fau.2	-	16	2119	c.1825G>T	c.(1825-1827)GCA>TCA	p.A609S	MCF2_uc004fav.2_Missense_Mutation_p.A625S|MCF2_uc011mwl.1_Missense_Mutation_p.A586S|MCF2_uc010nsh.1_Missense_Mutation_p.A609S|MCF2_uc011mwm.1_Missense_Mutation_p.A570S|MCF2_uc011mwn.1_Missense_Mutation_p.A754S|MCF2_uc004faw.2_Missense_Mutation_p.A669S|MCF2_uc011mwo.1_Missense_Mutation_p.A685S	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	609	DH.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					TGGAAAAATGCGCATTCTGAA	0.294			NA											21	51					2.37509e-13	3.95849e-13	0.010504	1	0
CXorf66	347487	broad.mit.edu	37	X	139047602	139047602	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:139047602C>A	uc004fbb.2	-	1	76	c.54G>T	c.(52-54)ATG>ATT	p.M18I		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	18						integral to membrane					0						GGTTTGTAGTCATGCAATTAT	0.318			NA											14	37					0.00244969	0.00268503	0.00245	1	0
UBE2NL	389898	broad.mit.edu	37	X	142967330	142967330	+	Nonsense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:142967330C>A	uc004fca.2	+	1	158	c.128C>A	c.(127-129)TCA>TAA	p.S43*		NM_001012989	NP_001013007	Q5JXB2	UE2NL_HUMAN	ubiquitin-conjugating enzyme E2N-like	43							acid-amino acid ligase activity				0	Acute lymphoblastic leukemia(192;6.56e-05)					GCTGGGGAATCAAAGGATTCC	0.463			NA											31	38					8.16721e-17	1.44778e-16	0.010818	1	0
PASD1	139135	broad.mit.edu	37	X	150773156	150773156	+	Missense_Mutation	SNP	T	T	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:150773156T>A	uc004fev.3	+	3	399	c.67T>A	c.(67-69)TGG>AGG	p.W23R		NM_173493	NP_775764	Q8IV76	PASD1_HUMAN	PAS domain containing 1	23						nucleus	signal transducer activity			ovary(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					GAAATTAAACTGGATTCCATC	0.333			NA											4	5					0	0	0.009096	0	0
L1CAM	3897	broad.mit.edu	37	X	153133866	153133866	+	Missense_Mutation	SNP	C	C	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:153133866C>A	uc004fjb.2	-	13	1702	c.1594G>T	c.(1594-1596)GGT>TGT	p.G532C	L1CAM_uc004fjc.2_Missense_Mutation_p.G532C|L1CAM_uc010nuo.2_Missense_Mutation_p.G527C|L1CAM_uc004fjd.1_Missense_Mutation_p.G346C	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	532	Ig-like C2-type 6.|Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					ACCCTGGAACCTTTCTTCTCG	0.612			NA											37	71					3.54561e-26	6.7649e-26	0.009718	1	0
PLXNA3	55558	broad.mit.edu	37	X	153694733	153694733	+	Missense_Mutation	SNP	C	C	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:153694733C>G	uc004flm.2	+	16	2987	c.2814C>G	c.(2812-2814)GAC>GAG	p.D938E		NM_017514	NP_059984	P51805	PLXA3_HUMAN	plexin A3 precursor	938	IPT/TIG 2.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	transmembrane receptor activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CAACGTTTGACCAAGTGAGTC	0.672			NA											34	82					0	0	0.003755	0	0
F8	2157	broad.mit.edu	37	X	154132669	154132669	+	Missense_Mutation	SNP	T	T	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:154132669T>C	uc004fmt.2	-	17	5888	c.5717A>G	c.(5716-5718)AAA>AGA	p.K1906R	F8_uc010nvi.1_Missense_Mutation_p.K65R	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1906	F5/8 type A 3.|Plastocyanin-like 6.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GTACCAGCTTTTGGTCTCATC	0.448			NA											51	68					0	0	0.00361	0	0
IL23R	149233	broad.mit.edu	37	1	67724433	67724434	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:67724433_67724434insA	uc001ddo.2	+	11	1597_1598	c.1512_1513insA	c.(1510-1515)ATTACTfs	p.I504fs	IL23R_uc009waz.2_Frame_Shift_Ins_p.I301fs|IL23R_uc010opi.1_RNA|IL23R_uc010opj.1_Frame_Shift_Ins_p.I102fs|IL23R_uc010opk.1_3'UTR|IL23R_uc010opl.1_Frame_Shift_Ins_p.I86fs|IL23R_uc010opm.1_RNA|IL23R_uc001ddq.2_Frame_Shift_Ins_p.I250fs|IL23R_uc010opn.1_Frame_Shift_Ins_p.I349fs|IL23R_uc001ddr.2_RNA|IL23R_uc010ops.1_Frame_Shift_Ins_p.I301fs|IL23R_uc010opt.1_Frame_Shift_Ins_p.I145fs|IL23R_uc010opu.1_Frame_Shift_Ins_p.I200fs|IL23R_uc010opv.1_Frame_Shift_Ins_p.I262fs|IL23R_uc010opw.1_Frame_Shift_Ins_p.I139fs|IL23R_uc010opx.1_Frame_Shift_Ins_p.I145fs|IL23R_uc010opy.1_Frame_Shift_Ins_p.I271fs|IL23R_uc010opz.1_Frame_Shift_Ins_p.I145fs|IL23R_uc010oqa.1_Frame_Shift_Ins_p.I145fs|IL23R_uc010oqb.1_Frame_Shift_Ins_p.I333fs|IL23R_uc010oqc.1_Frame_Shift_Ins_p.I220fs|IL23R_uc010oqd.1_Frame_Shift_Ins_p.I139fs|IL23R_uc010oqe.1_Frame_Shift_Ins_p.I102fs|IL23R_uc010oqf.1_Frame_Shift_Ins_p.I102fs|IL23R_uc010oqg.1_Frame_Shift_Ins_p.I102fs|IL23R_uc010oqh.1_Frame_Shift_Ins_p.I145fs|IL23R_uc001dds.2_Frame_Shift_Ins_p.I249fs|IL23R_uc001ddt.2_Frame_Shift_Ins_p.I102fs	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	504_505	Cytoplasmic (Potential).				inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						ATAATGAAATTACTTCCTTAAC	0.347			NA											13	28	---	---	---	---	NA	NA	NA	NA	NA
ASH1L	55870	broad.mit.edu	37	1	155451048	155451048	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:155451048delG	uc009wqq.2	-	3	2093	c.1613delC	c.(1612-1614)TCTfs	p.S538fs	ASH1L_uc001fkt.2_Frame_Shift_Del_p.S538fs|ASH1L_uc009wqr.1_Frame_Shift_Del_p.S538fs	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	538					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			AGATACATCAGAAGCACCTCC	0.438			NA											8	73	---	---	---	---	NA	NA	NA	NA	NA
TNR	7143	broad.mit.edu	37	1	175355240	175355240	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:175355240delG	uc001gkp.1	-	6	1786	c.1705delC	c.(1705-1707)CGAfs	p.R569fs	TNR_uc009wwu.1_Frame_Shift_Del_p.R569fs	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	569	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					ACCTCGTATCGGGAGCCAGGC	0.627			NA											19	72	---	---	---	---	NA	NA	NA	NA	NA
OR2M5	127059	broad.mit.edu	37	1	248308469	248308469	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:248308469delC	uc010pze.1	+	1	20	c.20delC	c.(19-21)ACCfs	p.T7fs		NM_001004690	NP_001004690	A3KFT3	OR2M5_HUMAN	olfactory receptor, family 2, subfamily M,	7	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|kidney(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0388)			GAGAATCAGACCTTCAACTCT	0.428			NA											50	201	---	---	---	---	NA	NA	NA	NA	NA
SH3BP5L	80851	broad.mit.edu	37	1	249106309	249106309	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr1:249106309delG	uc001iew.1	-	7	1524	c.972delC	c.(970-972)CCCfs	p.P324fs	SH3BP5L_uc010pzp.1_Frame_Shift_Del_p.P217fs|SH3BP5L_uc010pzq.1_Frame_Shift_Del_p.P292fs|SH3BP5L_uc001iev.1_Frame_Shift_Del_p.P205fs	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	324											0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			GGGCGGGGCCGGGCCCCAGGC	0.711			NA											8	36	---	---	---	---	NA	NA	NA	NA	NA
PHRF1	57661	broad.mit.edu	37	11	608054	608064	+	Frame_Shift_Del	DEL	CAGCCCGAAGG	CAGCCCGAAGG	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CAGCCCGAAGG	CAGCCCGAAGG	-	-	CAGCCCGAAGG	CAGCCCGAAGG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:608054_608064delCAGCCCGAAGG	uc001lqe.2	+	14	2729_2739	c.2598_2608delCAGCCCGAAGG	c.(2596-2610)AACAGCCCGAAGGCCfs	p.N866fs	PHRF1_uc010qwc.1_Frame_Shift_Del_p.N865fs|PHRF1_uc010qwd.1_Frame_Shift_Del_p.N864fs|PHRF1_uc010qwe.1_Frame_Shift_Del_p.N862fs|PHRF1_uc009ybz.1_Frame_Shift_Del_p.N656fs|PHRF1_uc009yca.1_RNA	NM_020901	NP_065952	Q9P1Y6	PHRF1_HUMAN	PHD and ring finger domains 1	866_870							RNA polymerase binding|zinc ion binding				0						TCTCCATCAACAGCCCGAAGGCCCAGACGGT	0.673			NA											13	84	---	---	---	---	NA	NA	NA	NA	NA
ASCL3	56676	broad.mit.edu	37	11	8959302	8959303	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:8959302_8959303insT	uc001mhd.1	-	2	466_467	c.406_407insA	c.(406-408)AGAfs	p.R136fs		NM_020646	NP_065697	Q9NQ33	ASCL3_HUMAN	ASCL3	135	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleolus	DNA binding				0				Epithelial(150;1.48e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0228)		GATCGCAGCTCTGAGGGTTTCC	0.49			NA											10	39	---	---	---	---	NA	NA	NA	NA	NA
METT5D1	196074	broad.mit.edu	37	11	28318438	28318438	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:28318438delC	uc001msh.2	+	6	1193	c.738delC	c.(736-738)TACfs	p.Y246fs	METT5D1_uc001msg.2_Frame_Shift_Del_p.Y246fs|METT5D1_uc001mse.2_Frame_Shift_Del_p.P232fs|METT5D1_uc001msi.2_Frame_Shift_Del_p.Y43fs	NM_001113528	NP_001107000	A6NJ78	MET15_HUMAN	methyltransferase 5 domain containing 1 isoform	246							methyltransferase activity				0						GCAGCATCTACCCCATCACCA	0.448			NA											19	87	---	---	---	---	NA	NA	NA	NA	NA
OR4C15	81309	broad.mit.edu	37	11	55322642	55322642	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55322642delG	uc010rig.1	+	1	860	c.860delG	c.(859-861)TGGfs	p.W287fs		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GAAGGGCGCTGGAAAGCTCTC	0.438			NA								HNSCC(20;0.049)			48	92	---	---	---	---	NA	NA	NA	NA	NA
OR4C16	219428	broad.mit.edu	37	11	55339859	55339859	+	Frame_Shift_Del	DEL	A	A	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55339859delA	uc010rih.1	+	1	256	c.256delA	c.(256-258)AAGfs	p.K86fs		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	86	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.K86*(1)		ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				TGCCCTTTTGAAGAAGACAAC	0.433			NA											50	188	---	---	---	---	NA	NA	NA	NA	NA
OR8H2	390151	broad.mit.edu	37	11	55872601	55872602	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	TG	TG	-	-	TG	TG	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:55872601_55872602delTG	uc010riy.1	+	1	83_84	c.83_84delTG	c.(82-84)CTGfs	p.L28fs		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					CAGATGGCTCTGTTTATGCTAT	0.431			NA								HNSCC(53;0.14)			67	116	---	---	---	---	NA	NA	NA	NA	NA
FOSL1	8061	broad.mit.edu	37	11	65664461	65664461	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:65664461delG	uc001ogg.1	-	2	303	c.116delC	c.(115-117)CCAfs	p.P39fs	FOSL1_uc010ros.1_Intron	NM_005438	NP_005429	P15407	FOSL1_HUMAN	FOS-like antigen 1	39					cellular defense response|chemotaxis|positive regulation of cell proliferation|response to virus|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				READ - Rectum adenocarcinoma(159;0.168)		GTTGATGCTTGGCACCAGGTG	0.557			NA											16	50	---	---	---	---	NA	NA	NA	NA	NA
CATSPER1	117144	broad.mit.edu	37	11	65788097	65788098	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:65788097_65788098insA	uc001ogt.2	-	7	2066_2067	c.1928_1929insT	c.(1927-1929)GGCfs	p.G643fs		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	643	Extracellular (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						TGTACCAGGCGCCTAGGGGGAG	0.594			NA											8	35	---	---	---	---	NA	NA	NA	NA	NA
CRTAM	56253	broad.mit.edu	37	11	122742061	122742061	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr11:122742061delC	uc001pyj.2	+	10	1136	c.1136delC	c.(1135-1137)TCAfs	p.S379fs	CRTAM_uc001pyk.2_Frame_Shift_Del_p.S180fs	NM_019604	NP_062550	O95727	CRTAM_HUMAN	class-I MHC-restricted T cell associated	379	Cytoplasmic (Potential).				cell recognition|detection of tumor cell|positive regulation of cytokine secretion|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target	integral to membrane|plasma membrane	receptor binding			ovary(1)	1		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.28e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		GTACAACATTCAAAATTAGAA	0.413			NA											25	44	---	---	---	---	NA	NA	NA	NA	NA
CAPZA3	93661	broad.mit.edu	37	12	18891436	18891436	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:18891436delG	uc001rdy.2	+	1	392	c.234delG	c.(232-234)ATGfs	p.M78fs	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	78					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				ACAATGTAATGGGCGACTACC	0.423			NA											16	55	---	---	---	---	NA	NA	NA	NA	NA
NTS	4922	broad.mit.edu	37	12	86268206	86268207	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr12:86268206_86268207insA	uc001tag.2	+	1	132_133	c.25_26insA	c.(25-27)CTTfs	p.L9fs		NM_006183	NP_006174	P30990	NEUT_HUMAN	neurotensin/neuromedin N preproprotein	9					regulation of blood vessel size|signal transduction	extracellular region|soluble fraction|transport vesicle	neuropeptide hormone activity				0						GAAAATCCAGCTTGTATGCATG	0.446			NA											27	61	---	---	---	---	NA	NA	NA	NA	NA
KLHL1	57626	broad.mit.edu	37	13	70681505	70681505	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr13:70681505delC	uc001vip.2	-	1	1121	c.327delG	c.(325-327)GGGfs	p.G109fs	KLHL1_uc010thm.1_Frame_Shift_Del_p.G109fs|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	109					actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		GAGTGCCCTGCCCAGGAGCCC	0.488			NA											17	50	---	---	---	---	NA	NA	NA	NA	NA
OR4K5	79317	broad.mit.edu	37	14	20389492	20389493	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20389492_20389493insA	uc010tkw.1	+	1	727_728	c.727_728insA	c.(727-729)CATfs	p.H243fs		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		GCTGGCTTCCCATATTGCAGTA	0.401			NA											35	145	---	---	---	---	NA	NA	NA	NA	NA
OR4K1	79544	broad.mit.edu	37	14	20404324	20404324	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:20404324delC	uc001vwj.1	+	1	499	c.499delC	c.(499-501)CCAfs	p.P167fs		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		AGTGGACCTGCCATTCTGTGG	0.458			NA											20	84	---	---	---	---	NA	NA	NA	NA	NA
CYP46A1	10858	broad.mit.edu	37	14	100182233	100182233	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:100182233delC	uc001ygo.2	+	8	780	c.780delC	c.(778-780)CGCfs	p.R260fs	CYP46A1_uc001ygp.2_Frame_Shift_Del_p.R107fs	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	260					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				GGGTCCAGCGCCGCCGGGAAG	0.647			NA											10	28	---	---	---	---	NA	NA	NA	NA	NA
EVL	51466	broad.mit.edu	37	14	100551124	100551125	+	Frame_Shift_Del	DEL	AT	AT	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	AT	AT	-	-	AT	AT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr14:100551124_100551125delAT	uc001ygt.2	+	2	345_346	c.106_107delAT	c.(106-108)ATCfs	p.I36fs	EVL_uc001ygv.2_Frame_Shift_Del_p.I42fs|EVL_uc001ygu.2_Frame_Shift_Del_p.I38fs|EVL_uc010avu.2_5'UTR	NM_016337	NP_057421	Q9UI08	EVL_HUMAN	Enah/Vasp-like	36	WH1.				actin polymerization or depolymerization|axon guidance|cell surface receptor linked signaling pathway|organ morphogenesis	cytoskeleton|cytosol|focal adhesion|lamellipodium	actin binding|profilin binding|SH3 domain binding			large_intestine(2)|ovary(1)	3		Melanoma(154;0.152)				ATTCAGCCGGATCAACATCTAC	0.51			NA											20	62	---	---	---	---	NA	NA	NA	NA	NA
LRRC57	255252	broad.mit.edu	37	15	42840305	42840306	+	Frame_Shift_Del	DEL	CA	CA	-	rs150825131		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	CA	CA	-	-	CA	CA	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr15:42840305_42840306delCA	uc001zqd.1	-	2	589_590	c.221_222delTG	c.(220-222)CTGfs	p.L74fs	HAUS2_uc001zqe.2_5'Flank|HAUS2_uc010udi.1_5'Flank|HAUS2_uc001zqf.2_5'Flank|LRRC57_uc001zqc.2_Frame_Shift_Del_p.L74fs	NM_153260	NP_694992	Q8N9N7	LRC57_HUMAN	leucine rich repeat containing 57	74	LRR 2.										0		all_cancers(109;1.99e-12)|all_epithelial(112;5.11e-11)|Lung NSC(122;4.53e-07)|all_lung(180;1.64e-06)|Melanoma(134;0.0262)		GBM - Glioblastoma multiforme(94;6.87e-07)		GAGCCATACTCAGTTTGTTGTT	0.465			NA											10	51	---	---	---	---	NA	NA	NA	NA	NA
HYDIN	54768	broad.mit.edu	37	16	70977826	70977826	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr16:70977826delC	uc002ezr.2	-	42	6683	c.6555delG	c.(6553-6555)GGGfs	p.G2185fs		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2186										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGTGGATGGGCCCCGGGGGGA	0.388			NA											11	17	---	---	---	---	NA	NA	NA	NA	NA
GAA	2548	broad.mit.edu	37	17	78083808	78083808	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr17:78083808delG	uc002jxo.2	+	10	1573	c.1391delG	c.(1390-1392)AGGfs	p.R464fs	GAA_uc002jxp.2_Frame_Shift_Del_p.R464fs|GAA_uc002jxq.2_Frame_Shift_Del_p.R464fs	NM_001079803	NP_001073271	P10253	LYAG_HUMAN	acid alpha-glucosidase preproprotein	464					cardiac muscle contraction|diaphragm contraction|glycogen catabolic process|lysosome organization|tongue morphogenesis|vacuolar sequestering|ventricular cardiac muscle tissue morphogenesis	lysosomal membrane	carbohydrate binding|maltose alpha-glucosidase activity			ovary(1)	1	all_neural(118;0.117)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.139)		Acarbose(DB00284)	GGTCTGCGGAGGGGGGTTTTC	0.657			NA											16	86	---	---	---	---	NA	NA	NA	NA	NA
CEP76	79959	broad.mit.edu	37	18	12697226	12697227	+	Frame_Shift_Ins	INS	-	-	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:12697226_12697227insC	uc002kri.2	-	5	857_858	c.701_702insG	c.(700-702)GGTfs	p.G234fs	PSMG2_uc002krg.2_Intron|CEP76_uc002krh.3_Frame_Shift_Ins_p.G56fs|CEP76_uc010wzz.1_Frame_Shift_Ins_p.G159fs|CEP76_uc010xaa.1_Frame_Shift_Ins_p.G56fs	NM_024899	NP_079175	Q8TAP6	CEP76_HUMAN	centrosomal protein 76kDa	234					G2/M transition of mitotic cell cycle|regulation of centriole replication	centriole|cytosol	protein binding				0						CCATACCTACACCCATAAGTTC	0.342			NA											19	20	---	---	---	---	NA	NA	NA	NA	NA
ZNF236	7776	broad.mit.edu	37	18	74583718	74583718	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr18:74583718delC	uc002lmi.2	+	5	796	c.598delC	c.(598-600)CCGfs	p.P200fs	ZNF236_uc002lmj.2_RNA|ZNF236_uc002lmk.1_Frame_Shift_Del_p.P200fs	NM_007345	NP_031371	Q9UL36	ZN236_HUMAN	zinc finger protein 236	200	C2H2-type 6.				cellular response to glucose stimulus	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)	4		Prostate(75;0.0405)|Esophageal squamous(42;0.129)|Melanoma(33;0.132)		OV - Ovarian serous cystadenocarcinoma(15;4.36e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0686)		GTATTCGTGTCCGCACTGTGG	0.408			NA											20	53	---	---	---	---	NA	NA	NA	NA	NA
SHANK1	50944	broad.mit.edu	37	19	51175344	51175344	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:51175344delG	uc002psx.1	-	21	2624	c.2605delC	c.(2605-2607)CAGfs	p.Q869fs	SHANK1_uc002psw.1_Frame_Shift_Del_p.Q253fs	NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	869					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		TAACTTGGCTGGGCACGGTGG	0.562			NA											11	8	---	---	---	---	NA	NA	NA	NA	NA
ZNF534	147658	broad.mit.edu	37	19	52941322	52941322	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:52941322delC	uc002pzk.2	+	4	709	c.648delC	c.(646-648)AACfs	p.N216fs	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Frame_Shift_Del_p.N203fs	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	216	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCCTTACTAACCGTCAAGTAA	0.388			NA											13	44	---	---	---	---	NA	NA	NA	NA	NA
LILRB5	10990	broad.mit.edu	37	19	54758761	54758762	+	Frame_Shift_Ins	INS	-	-	G	rs149797743	byFrequency	TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:54758761_54758762insG	uc002qex.2	-	6	1202_1203	c.1091_1092insC	c.(1090-1092)CCGfs	p.P364fs	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Frame_Shift_Ins_p.P355fs|LILRB5_uc002qey.2_Frame_Shift_Ins_p.P364fs|LILRB5_uc002qez.2_Frame_Shift_Ins_p.P264fs|LILRB5_uc002qfa.1_Frame_Shift_Ins_p.P254fs|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	364	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		TTAGACACAGCGGGGGATGGGC	0.55			NA											12	43	---	---	---	---	NA	NA	NA	NA	NA
BRSK1	84446	broad.mit.edu	37	19	55815133	55815133	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr19:55815133delG	uc002qkg.2	+	12	1502	c.1225delG	c.(1225-1227)GGGfs	p.G409fs	BRSK1_uc002qkf.2_Frame_Shift_Del_p.G425fs|BRSK1_uc002qkh.2_Frame_Shift_Del_p.G104fs	NM_032430	NP_115806	Q8TDC3	BRSK1_HUMAN	BR serine/threonine kinase 1	409					establishment of cell polarity|G2/M transition DNA damage checkpoint|neuron differentiation|response to UV	cell junction|cytoplasm|nucleus	magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|stomach(1)|lung(1)|breast(1)|skin(1)	6		Renal(1328;0.245)	BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.0474)		CACCGATGCCGGGGGTGGTGG	0.662			NA											13	37	---	---	---	---	NA	NA	NA	NA	NA
PXDN	7837	broad.mit.edu	37	2	1667450	1667451	+	Frame_Shift_Ins	INS	-	-	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:1667450_1667451insC	uc002qxa.2	-	12	1557_1558	c.1493_1494insG	c.(1492-1494)GGCfs	p.G498fs	PXDN_uc002qxb.1_Frame_Shift_Ins_p.G498fs	NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	498	Ig-like C2-type 3.				extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		ATTCGTACTGGCCCTGGTCGTG	0.619			NA											8	102	---	---	---	---	NA	NA	NA	NA	NA
NRXN1	9378	broad.mit.edu	37	2	50724570	50724571	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:50724570_50724571insT	uc010fbq.2	-	14	4376_4377	c.2899_2900insA	c.(2899-2901)ATGfs	p.M967fs	NRXN1_uc002rxb.3_Frame_Shift_Ins_p.M599fs|NRXN1_uc002rxe.3_Frame_Shift_Ins_p.M927fs|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			AAAAAGATGCATAGAAGTGTAG	0.396			NA											11	28	---	---	---	---	NA	NA	NA	NA	NA
CNTNAP5	129684	broad.mit.edu	37	2	125530420	125530421	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:125530420_125530421insT	uc002tno.2	+	17	2939_2940	c.2575_2576insT	c.(2575-2577)GTGfs	p.V859fs	CNTNAP5_uc010flu.2_Frame_Shift_Ins_p.V860fs	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	859	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding	p.V859A(1)		ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GAATGGTCCTGTGGAGCTTGTA	0.51			NA											16	75	---	---	---	---	NA	NA	NA	NA	NA
ARHGAP15	55843	broad.mit.edu	37	2	143973977	143973978	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:143973977_143973978insA	uc002tvm.3	+	4	410_411	c.259_260insA	c.(259-261)CAAfs	p.Q87fs	ARHGAP15_uc010zbl.1_Frame_Shift_Ins_p.Q87fs	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	87	PH.				regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		AGGTTATCTGCAAAAAGCTAAA	0.312			NA											17	78	---	---	---	---	NA	NA	NA	NA	NA
ZEB2	9839	broad.mit.edu	37	2	145187395	145187395	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:145187395delC	uc002tvu.2	-	3	752	c.272delG	c.(271-273)GGTfs	p.G91fs	ZEB2_uc002tvv.2_Frame_Shift_Del_p.G86fs|ZEB2_uc010zbm.1_Frame_Shift_Del_p.G86fs|ZEB2_uc010fnp.2_Frame_Shift_Del_p.G86fs|ZEB2_uc010fnq.1_Frame_Shift_Del_p.G120fs|ZEB2_uc002tvw.2_Frame_Shift_Del_p.G86fs	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	91						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		TTCCACTCCACCCTCCCTTAT	0.517	Melanoma(33;1235 1264 5755 16332)		NA											15	79	---	---	---	---	NA	NA	NA	NA	NA
XIRP2	129446	broad.mit.edu	37	2	168102600	168102600	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:168102600delG	uc002udx.2	+	8	4716	c.4698delG	c.(4696-4698)CAGfs	p.Q1566fs	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Frame_Shift_Del_p.Q1391fs|XIRP2_uc010fpq.2_Frame_Shift_Del_p.Q1344fs|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_5'Flank	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	1391					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						AAGTTATCCAGGCTCCTGGAA	0.353			NA											16	31	---	---	---	---	NA	NA	NA	NA	NA
CCDC108	255101	broad.mit.edu	37	2	219900384	219900384	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr2:219900384delG	uc002vjl.1	-	5	444	c.360delC	c.(358-360)CCCfs	p.P120fs	CCDC108_uc010zkp.1_Frame_Shift_Del_p.P109fs|CCDC108_uc010zkq.1_Frame_Shift_Del_p.P55fs|CCDC108_uc002vjn.2_Frame_Shift_Del_p.P55fs	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	120						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TGGAGCTTGCGGGCTGTTCAG	0.567			NA											14	27	---	---	---	---	NA	NA	NA	NA	NA
EPB41L1	2036	broad.mit.edu	37	20	34809839	34809840	+	Frame_Shift_Ins	INS	-	-	G			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr20:34809839_34809840insG	uc002xfb.2	+	20	2664_2665	c.2493_2494insG	c.(2491-2496)ACTGGGfs	p.T831fs	EPB41L1_uc002xeu.2_Frame_Shift_Ins_p.T729fs|EPB41L1_uc002xev.2_Frame_Shift_Ins_p.T830fs|EPB41L1_uc002xew.2_Frame_Shift_Ins_p.T722fs|EPB41L1_uc002xex.2_Frame_Shift_Ins_p.T651fs|EPB41L1_uc002xey.2_Frame_Shift_Ins_p.T581fs|EPB41L1_uc002xez.2_Frame_Shift_Ins_p.T729fs|EPB41L1_uc010gfq.2_Frame_Shift_Ins_p.T929fs	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	831_832	Carboxyl-terminal (CTD).				cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					TCATCATTACTGGGGATGAAGA	0.54			NA											49	67	---	---	---	---	NA	NA	NA	NA	NA
MN1	4330	broad.mit.edu	37	22	28194910	28194912	+	In_Frame_Del	DEL	TGT	TGT	-	rs45520238		TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	TGT	TGT	-	-	TGT	TGT	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:28194910_28194912delTGT	uc003adj.2	-	1	2575_2577	c.1620_1622delACA	c.(1618-1623)CAACAG>CAG	p.540_541QQ>Q		NM_002430	NP_002421	Q10571	MN1_HUMAN	meningioma  1	540_541	Poly-Gln.						binding			central_nervous_system(3)|lung(3)|large_intestine(1)|breast(1)|skin(1)|ovary(1)	10						ttgctgttgctgttgctgctgct	0.394			NA	T	ETV6	AML|meningioma								3	3	---	---	---	---	NA	NA	NA	NA	NA
MCHR1	2847	broad.mit.edu	37	22	41077634	41077634	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr22:41077634delC	uc003ayz.2	+	2	1239	c.971delC	c.(970-972)ACCfs	p.T324fs	MCHR1_uc003aza.2_Frame_Shift_Del_p.T213fs|uc003azb.1_RNA	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	324	Helical; Name=6; (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						AAGAGGGTGACCCGCACAGCC	0.627			NA											7	22	---	---	---	---	NA	NA	NA	NA	NA
C3orf20	84077	broad.mit.edu	37	3	14770100	14770100	+	Frame_Shift_Del	DEL	A	A	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	A	A	-	-	A	A	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:14770100delA	uc003byy.2	+	12	2249	c.1845delA	c.(1843-1845)TCAfs	p.S615fs	C3orf20_uc003byz.2_Frame_Shift_Del_p.S493fs|C3orf20_uc003bza.2_Frame_Shift_Del_p.S493fs|C3orf20_uc003bzb.1_Frame_Shift_Del_p.S116fs	NM_032137	NP_115513	Q8ND61	CC020_HUMAN	hypothetical protein LOC84077	615						cytoplasm|integral to membrane				ovary(3)|skin(1)	4						TGGAATCCTCAATTGCAGAGA	0.502			NA											7	34	---	---	---	---	NA	NA	NA	NA	NA
KLHL18	23276	broad.mit.edu	37	3	47382105	47382105	+	Frame_Shift_Del	DEL	G	G	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	G	G	-	-	G	G	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:47382105delG	uc003crd.2	+	8	1291	c.1165delG	c.(1165-1167)GGGfs	p.G389fs	KLHL18_uc011bav.1_Frame_Shift_Del_p.G277fs	NM_025010	NP_079286	O94889	KLH18_HUMAN	kelch-like 18	389	Kelch 3.										0		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00645)|Kidney(197;0.00741)		CTACGTCTGTGGGGGCTACGA	0.577			NA											21	95	---	---	---	---	NA	NA	NA	NA	NA
SEMA5B	54437	broad.mit.edu	37	3	122641169	122641170	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr3:122641169_122641170insT	uc003efz.1	-	11	1701_1702	c.1397_1398insA	c.(1396-1398)CAGfs	p.Q466fs	SEMA5B_uc011bju.1_Frame_Shift_Ins_p.Q408fs|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Frame_Shift_Ins_p.Q466fs|SEMA5B_uc010hro.1_Frame_Shift_Ins_p.Q408fs|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	466	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		GCACGCTGTCCTGGGTGACACA	0.649			NA											10	18	---	---	---	---	NA	NA	NA	NA	NA
FAM173B	134145	broad.mit.edu	37	5	10239355	10239356	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:10239355_10239356insA	uc003jeo.2	-	2	158_159	c.129_130insT	c.(127-132)CTTGTGfs	p.L43fs	FAM173B_uc003jep.2_RNA|FAM173B_uc010itr.2_Frame_Shift_Ins_p.L43fs	NM_199133	NP_954584	Q6P4H8	F173B_HUMAN	hypothetical protein LOC134145	43_44	Helical; (Potential).					integral to membrane				kidney(1)|central_nervous_system(1)	2						GTGCCACCCACAAGCCCAGTAA	0.48			NA											23	254	---	---	---	---	NA	NA	NA	NA	NA
ROPN1L	83853	broad.mit.edu	37	5	10461430	10461431	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:10461430_10461431insT	uc003jex.3	+	4	823_824	c.552_553insT	c.(550-555)CCCTTGfs	p.P184fs		NM_031916	NP_114122	Q96C74	ROP1L_HUMAN	ropporin 1-like	184_185					ciliary or flagellar motility|signal transduction	cytoplasm|motile cilium	cAMP-dependent protein kinase regulator activity|protein binding			ovary(1)	1						ATGTGTCTCCCTTGGAGACGGA	0.505			NA											53	291	---	---	---	---	NA	NA	NA	NA	NA
DNAH5	1767	broad.mit.edu	37	5	13701425	13701426	+	Frame_Shift_Ins	INS	-	-	A			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:13701425_13701426insA	uc003jfd.2	-	77	13500_13501	c.13458_13459insT	c.(13456-13461)TTTAACfs	p.F4486fs	DNAH5_uc003jfc.2_Frame_Shift_Ins_p.F654fs	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4486_4487					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CCCTGGGGGTTAAAAAAACCCG	0.426			NA							Kartagener_syndrome				18	206	---	---	---	---	NA	NA	NA	NA	NA
GPR150	285601	broad.mit.edu	37	5	94956920	94956920	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr5:94956920delC	uc003kle.1	+	1	941	c.941delC	c.(940-942)GCCfs	p.A314fs		NM_199243	NP_954713	Q8NGU9	GP150_HUMAN	G protein-coupled receptor 150	314	Helical; Name=6; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(142;0.000462)|all_epithelial(76;2.44e-06)|all_lung(232;0.0318)|Lung NSC(167;0.041)|Ovarian(225;0.051)		all cancers(79;1.82e-16)		TACTTTGCCGCCCGGCTGGCG	0.741			NA											3	3	---	---	---	---	NA	NA	NA	NA	NA
TUBB2B	347733	broad.mit.edu	37	6	3225019	3225020	+	Frame_Shift_Ins	INS	-	-	C			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:3225019_3225020insC	uc003mvg.2	-	4	1494_1495	c.1303_1304insG	c.(1303-1305)GAGfs	p.E435fs	TUBB2B_uc010jnj.2_Frame_Shift_Ins_p.E398fs|TUBB2B_uc010jnk.2_Frame_Shift_Ins_p.E363fs|TUBB2B_uc003mvh.2_Frame_Shift_Ins_p.E408fs|uc011dhu.1_RNA	NM_178012	NP_821080	Q9BVA1	TBB2B_HUMAN	tubulin, beta 2B	435					'de novo' posttranslational protein folding|microtubule-based movement|neuron migration|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			large_intestine(1)	1	Ovarian(93;0.0386)	all_hematologic(90;0.108)				CTCCTCGAACTCCCCTTGTTCG	0.653			NA											11	57	---	---	---	---	NA	NA	NA	NA	NA
TTK	7272	broad.mit.edu	37	6	80715639	80715639	+	Frame_Shift_Del	DEL	T	T	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr6:80715639delT	uc003pjc.2	+	2	153	c.79delT	c.(79-81)TTTfs	p.F27fs	TTK_uc003pjb.3_Frame_Shift_Del_p.F27fs	NM_003318	NP_003309	P33981	TTK_HUMAN	TTK protein kinase	27					mitotic cell cycle spindle assembly checkpoint|mitotic spindle organization|positive regulation of cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation	spindle	ATP binding|identical protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(4)|stomach(2)|lung(2)|large_intestine(2)|pancreas(1)	11		all_cancers(76;0.00177)|Acute lymphoblastic leukemia(125;1.24e-05)|all_hematologic(105;0.00223)|all_epithelial(107;0.2)		BRCA - Breast invasive adenocarcinoma(397;0.0321)		TAAAAATAAGTTTAAAAATGA	0.303			NA											24	23	---	---	---	---	NA	NA	NA	NA	NA
CCDC126	90693	broad.mit.edu	37	7	23651005	23651005	+	Frame_Shift_Del	DEL	T	T	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	T	T	-	-	T	T	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:23651005delT	uc003swl.2	+	3	528	c.71delT	c.(70-72)ATTfs	p.I24fs	CCDC126_uc003swm.2_Frame_Shift_Del_p.I24fs|CCDC126_uc003swn.2_Frame_Shift_Del_p.I24fs	NM_138771	NP_620126	Q96EE4	CC126_HUMAN	coiled-coil domain containing 126 precursor	24						extracellular region				ovary(1)|skin(1)	2						TTTGGACTCATTTGGGGATTG	0.338			NA											7	47	---	---	---	---	NA	NA	NA	NA	NA
ZKSCAN5	23660	broad.mit.edu	37	7	99123799	99123800	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:99123799_99123800insT	uc003uqv.2	+	6	1260_1261	c.1136_1137insT	c.(1135-1137)TGTfs	p.C379fs	ZKSCAN5_uc010lfx.2_Frame_Shift_Ins_p.C379fs|ZKSCAN5_uc003uqw.2_Frame_Shift_Ins_p.C379fs|ZKSCAN5_uc003uqx.2_Frame_Shift_Ins_p.C306fs|ZKSCAN5_uc003uqy.2_Frame_Shift_Ins_p.C115fs	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	379	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					TGCGGAGAATGTGGGAAGAGCT	0.535			NA											9	130	---	---	---	---	NA	NA	NA	NA	NA
CHRM2	1129	broad.mit.edu	37	7	136701006	136701007	+	Frame_Shift_Ins	INS	-	-	T			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	-	-	-	-	-	-	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr7:136701006_136701007insT	uc003vtf.1	+	4	2017_2018	c.1394_1395insT	c.(1393-1395)ACAfs	p.T465fs	CHRM2_uc003vtg.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vtj.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vtk.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vtl.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vtm.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vti.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vto.1_Frame_Shift_Ins_p.T465fs|CHRM2_uc003vtn.1_Frame_Shift_Ins_p.T465fs|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	465	Cytoplasmic (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	ATAGGCGCTACAAGGTAAAATA	0.406			NA											30	51	---	---	---	---	NA	NA	NA	NA	NA
CSMD1	64478	broad.mit.edu	37	8	2949144	2949144	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr8:2949144delC	uc011kwk.1	-	48	7572	c.7182delG	c.(7180-7182)GGGfs	p.G2394fs	CSMD1_uc011kwj.1_Frame_Shift_Del_p.G1723fs|CSMD1_uc010lrg.2_Frame_Shift_Del_p.G462fs	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2394	CUB 14.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CAGTATGATTCCCACTTAAGA	0.408			NA											6	13	---	---	---	---	NA	NA	NA	NA	NA
C9orf172	389813	broad.mit.edu	37	9	139740876	139740876	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chr9:139740876delC	uc011meh.1	+	1	2010	c.2010delC	c.(2008-2010)TGCfs	p.C670fs	PHPT1_uc004cjp.2_5'Flank|PHPT1_uc011mei.1_5'Flank|PHPT1_uc004cjq.3_5'Flank	NM_001080482	NP_001073951	C9J069	CI172_HUMAN	chromosome 9 open reading frame 172	670											0						ATGCGCGCTGCCGGCGCACCG	0.577			NA											10	24	---	---	---	---	NA	NA	NA	NA	NA
PIM2	11040	broad.mit.edu	37	X	48772296	48772296	+	Splice_Site	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:48772296delC	uc004dls.2	-	4	897	c.595_splice	c.e4+1	p.G199_splice		NM_006875	NP_006866	Q9P1W9	PIM2_HUMAN	serine/threonine protein kinase pim-2						anti-apoptosis|cell proliferation|male meiosis|positive regulation of autophagy|positive regulation of I-kappaB kinase/NF-kappaB cascade|response to virus		ATP binding|protein serine/threonine kinase activity			lung(3)|stomach(1)	4						AGAAGCCTTACCATCAAAGTC	0.488			NA											8	29	---	---	---	---	NA	NA	NA	NA	NA
PCDH19	57526	broad.mit.edu	37	X	99657667	99657667	+	Frame_Shift_Del	DEL	C	C	-			TCGA-95-7039-01A-11D-1945-08	TCGA-95-7039-10A-01D-1946-08	C	C	-	-	C	C	Unknown	Untested	Somatic	Unspecified	WXS	none	NA	NA	Illumina HiSeq	2d834605-102b-4b3a-a2fa-b26525c77acf	fd2074ee-309f-48f9-a122-92a5bb8ee1f2	g.chrX:99657667delC	uc010nmz.2	-	3	4147	c.2471delG	c.(2470-2472)GGCfs	p.G824fs	PCDH19_uc004efw.3_Frame_Shift_Del_p.G777fs|PCDH19_uc004efx.3_Frame_Shift_Del_p.G777fs	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	824	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						GCGGCGGCAGCCCAGGGGCAG	0.547			NA											11	8	---	---	---	---	NA	NA	NA	NA	NA
